Pregenerated sensors for UBE2CBP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032415Ensembl transcript IDs: ENSMUST00000034986.14, ENSMUST00000121189.3
Found 100 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTTGTTCACCCCAGCAGGTTGTGCTCACAGAGCAAACTGCTGGCTTaGGCTGGGTTCCGAGCTGGAGAGCTGTCCGCTGGTAGACCAGAA | + |
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Preference number: 1 (lower is better) Translates to: LVHPSRLCSQSKLLA*AGFRAGELSAGRPE Trigger: TTCTGGTCTACCAGCGGACAGCTCTCCAGCTCGGAACCCAGCCCAAGCCAGCAGTTTGCTCTGTGAGCACAACCTGCTGGGGTGAACAAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034986.14 ENSMUST00000121189.3 |
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| 3UTR GCA 90 bp | CAGTCCCCATTCTGCAGCTTAGTTCTTGTTCACCCCAGCAGGTTGTaGTCACAGAGCAAACTGCTGGCTTGGGCTGGGTTCCGAGCTGGA | + |
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Preference number: 1 (lower is better) Translates to: QSPFCSLVLVHPSRL*SQSKLLAWAGFRAG Trigger: TCCAGCTCGGAACCCAGCCCAAGCCAGCAGTTTGCTCTGTGAGCACAACCTGCTGGGGTGAACAAGAACTAAGCTGCAGAATGGGGACTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
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| 3UTR GCA 90 bp | AGCCAGAGCCAGCTTCCAAGGAACTTTCCAACAGCGGGAACTTCCTaGTACAACTGGAACTTCTCAGAGGTTCGATCACCAAACTGTCTG | + |
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Preference number: 1 (lower is better) Translates to: SQSQLPRNFPTAGTS*YNWNFSEVRSPNCL Trigger: CAGACAGTTTGGTGATCGAACCTCTGAGAAGTTCCAGTTGTAGCAGGAAGTTCCCGCTGTTGGAAAGTTCCTTGGAAGCTGGCTCTGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| 3UTR CCA 90 bp | CTCCACCAGGCACTGGGCAATAATGCTCTGAAGGAACTGAGACCTTaGTATGTTAGGAAAACTTCCCTCAGATGGCCGGATAATTACCTC | + |
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Preference number: 1 (lower is better) Translates to: LHQALGNNALKELRP*YVRKTSLRWPDNYL Trigger: GAGGTAATTATCCGGCCATCTGAGGGAAGTTTTCCTAACATACCAAGGTCTCAGTTCCTTCAGAGCATTATTGCCCAGTGCCTGGTGGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| 3UTR TCA 90 bp | CCTGCTACAACTGGAACTTCTCAGAGGTTCGATCACCAAACTGTCTaGGTTCAAAACCCAGAGCAAGATGTACACTTTGCCATCCTGACC | + |
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Preference number: 1 (lower is better) Translates to: PATTGTSQRFDHQTV*VQNPEQDVHFAILT Trigger: GGTCAGGATGGCAAAGTGTACATCTTGCTCTGGGTTTTGAACTCAGACAGTTTGGTGATCGAACCTCTGAGAAGTTCCAGTTGTAGCAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| 3UTR CCA 90 bp | CAGCTTCCAAGGAACTTTCCAACAGCGGGAACTTCCTGCTACAACTaGAACTTCTCAGAGGTTCGATCACCAAACTGTCTGAGTTCAAAA | + |
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Preference number: 1 (lower is better) Translates to: QLPRNFPTAGTSCYN*NFSEVRSPNCLSSK Trigger: TTTTGAACTCAGACAGTTTGGTGATCGAACCTCTGAGAAGTTCCAGTTGTAGCAGGAAGTTCCCGCTGTTGGAAAGTTCCTTGGAAGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| 3UTR CCA 90 bp | TTCCAGGTGGTGCTGACACAGCACAGATTTGAATATTCCTCTCTGTaGGAAGTAGAGGTGCAACTTCTATACTTAACCTGCTACTACAAC | + |
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Preference number: 1 (lower is better) Translates to: FQVVLTQHRFEYSSL*EVEVQLLYLTCYYN Trigger: GTTGTAGTAGCAGGTTAAGTATAGAAGTTGCACCTCTACTTCCCACAGAGAGGAATATTCAAATCTGTGCTGTGTCAGCACCACCTGGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
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| 3UTR TCA 90 bp | CCATTAGCTAATATGCTTCCAGGTGGTGCTGACACAGCACAGATTTaGATATTCCTCTCTGTGGGAAGTAGAGGTGCAACTTCTATACTT | + |
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Preference number: 1 (lower is better) Translates to: PLANMLPGGADTAQI*IFLSVGSRGATSIL Trigger: AAGTATAGAAGTTGCACCTCTACTTCCCACAGAGAGGAATATTCAAATCTGTGCTGTGTCAGCACCACCTGGAAGCATATTAGCTAATGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
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| 3UTR-3UTR TCA 90 bp | GAGCTGGAGAGCTGTCCGCTGGTAGACCAGAAAGCCGCAGCTTCAACAGTTACAGCTGGTAGAGGACTTTaGTGGCATTCCAGGCAGAGC | + |
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Preference number: 2 (lower is better) Translates to: ELESCPLVDQKAAASTVTAGRGL*WHSRQS Trigger: GCTCTGCCTGGAATGCCATCAAAGTCCTCTACCAGC...TGTAACTGTTGAAGCTGCGGCTTTCTGGTCTACCAGCGGACAGCTCTCCAGCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| 3UTR-3UTR GCA 90 bp | TCCCCAGTGAAGTTCCTCGCTGCGTTCACACAGGACAGATGGGCTTCCATTAGCCACCCCAGCAGGTTGTaGTCACAGAGCAAACTGCTG | + |
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Preference number: 2 (lower is better) Translates to: SPVKFLAAFTQDRWASISHPSRL*SQSKLL Trigger: CAGCAGTTTGCTCTGTGAGCACAACCTGCTGGGGTG...GCTAATGGAAGCCCATCTGTCCTGTGTGAACGCAGCGAGGAACTTCACTGGGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
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| 3UTR-3UTR CCA 90 bp | GGAACTTTCCAACAGCGGGAACTTCCTGCTACAACTGGAACTTCTCAGAGGTTCACTGCTGGCTTGGGCTaGGTTCCGAGCTGGAGAGCT | + |
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Preference number: 2 (lower is better) Translates to: GTFQQRELPATTGTSQRFTAGLG*VPSWRA Trigger: AGCTCTCCAGCTCGGAACCCAGCCCAAGCCAGCAGT...GAACCTCTGAGAAGTTCCAGTTGTAGCAGGAAGTTCCCGCTGTTGGAAAGTTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| 3UTR-3UTR CCA 90 bp | CCCAGCAGGTTGTGCTCACAGAGCAAACTGCTGGCTTGGGCTGGGTTCCGAGCTACTTCCTGCTACAACTaGAACTTCTCAGAGGTTCGA | + |
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Preference number: 2 (lower is better) Translates to: PSRLCSQSKLLAWAGFRATSCYN*NFSEVR Trigger: TCGAACCTCTGAGAAGTTCCAGTTGTAGCAGGAAGT...AGCTCGGAACCCAGCCCAAGCCAGCAGTTTGCTCTGTGAGCACAACCTGCTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| 3UTR-3UTR CCA 90 bp | TTCCAGGTGGTGCTGACACAGCACAGATTTGAATATTCCTCTCTGTGGGAAGTAACTGCTGGCTTGGGCTaGGTTCCGAGCTGGAGAGCT | + |
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Preference number: 2 (lower is better) Translates to: FQVVLTQHRFEYSSLWEVTAGLG*VPSWRA Trigger: AGCTCTCCAGCTCGGAACCCAGCCCAAGCCAGCAGT...TACTTCCCACAGAGAGGAATATTCAAATCTGTGCTGTGTCAGCACCACCTGGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
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| 3UTR-3UTR CCA 90 bp | ATGGCATTCCAGGCAGAGCCAGAGCCAGCTTCCAAGGAACTTTCCAACAGCGGGTTGTTTCTGATGACATaGTCTCTCCCAACGTTACCT | + |
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Preference number: 2 (lower is better) Translates to: MAFQAEPEPASKELSNSGLFLMT*SLPTLP Trigger: AGGTAACGTTGGGAGAGACCATGTCATCAGAAACAA...CCCGCTGTTGGAAAGTTCCTTGGAAGCTGGCTCTGGCTCTGCCTGGAATGCCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| 3UTR-3UTR GCA 90 bp | CACCCCAGCAGGTTGTGCTCACAGAGCAAACTGCTGGCTTGGGCTGGGTTCCGATTTGCTTTTGGTTCCTaGTCCAAATCACTTTTCAAA | + |
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Preference number: 2 (lower is better) Translates to: HPSRLCSQSKLLAWAGFRFAFGS*SKSLFK Trigger: TTTGAAAAGTGATTTGGAGCAGGAACCAAAAGCAAA...TCGGAACCCAGCCCAAGCCAGCAGTTTGCTCTGTGAGCACAACCTGCTGGGGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| 3UTR-3UTR CCA 90 bp | AACTGGAACTTCTCAGAGGTTCGATCACCAAACTGTCTGAGTTCAAAACCCAGACACAGAGCAAACTGCTaGCTTGGGCTGGGTTCCGAG | + |
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Preference number: 2 (lower is better) Translates to: NWNFSEVRSPNCLSSKPRHRANC*LGLGSE Trigger: CTCGGAACCCAGCCCAAGCCAGCAGTTTGCTCTGTG...TCTGGGTTTTGAACTCAGACAGTTTGGTGATCGAACCTCTGAGAAGTTCCAGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| 3UTR-3UTR TCA 90 bp | TTCCGAGCTGGAGAGCTGTCCGCTGGTAGACCAGAAAGCCGCAGCTTCAACAGTTGCAACGCTTACAAATaGCTTTGGTATTTGCTTTTG | + |
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Preference number: 2 (lower is better) Translates to: FRAGELSAGRPESRSFNSCNAYK*LWYLLL Trigger: CAAAAGCAAATACCAAAGTCATTTGTAAGCGTTGCA...ACTGTTGAAGCTGCGGCTTTCTGGTCTACCAGCGGACAGCTCTCCAGCTCGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| 3UTR-3UTR CCA 90 bp | GAAAAACTGGAAATTTCAGCACAGTCCCCATTCTGCAGCTTAGTTCTTGTTCACAGCAAACTGCTGGCTTaGGCTGGGTTCCGAGCTGGA | + |
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Preference number: 2 (lower is better) Translates to: EKLEISAQSPFCSLVLVHSKLLA*AGFRAG Trigger: TCCAGCTCGGAACCCAGCCCAAGCCAGCAGTTTGCT...GTGAACAAGAACTAAGCTGCAGAATGGGGACTGTGCTGAAATTTCCAGTTTTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
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| 3UTR-3UTR GCA 90 bp | GATTTAGAGTGGTTAACATTCAGCTCCCCAGTGAAGTTCCTCGCTGCGTTCACAGCACAGTCCCCATTCTaGAGCTTAGTTCTTGTTCAC | + |
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Preference number: 2 (lower is better) Translates to: DLEWLTFSSPVKFLAAFTAQSPF*SLVLVH Trigger: GTGAACAAGAACTAAGCTGCAGAATGGGGACTGTGC...TGTGAACGCAGCGAGGAACTTCACTGGGGAGCTGAATGTTAACCACTCTAAATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
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| 3UTR-3UTR CCA 90 bp | GGAGAGCTCCACCAGGCACTGGGCAATAATGCTCTGAAGGAACTGAGACCTTGGTTTGGTATTTGCTTTTaGTTCCTGCTCCAAATCACT | + |
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Preference number: 2 (lower is better) Translates to: GELHQALGNNALKELRPWFGICF*FLLQIT Trigger: AGTGATTTGGAGCAGGAACCAAAAGCAAATACCAAA...CCAAGGTCTCAGTTCCTTCAGAGCATTATTGCCCAGTGCCTGGTGGAGCTCTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| 3UTR-3UTR GCA 90 bp | TCAACAGTTACATCTTCAAAAAGGCCACTCTTTATTCCTGCTTTTGATACAGGGGCTCACAGAGCAAACTaGTGGCTTGGGCTGGGTTCC | + |
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Preference number: 2 (lower is better) Translates to: STVTSSKRPLFIPAFDTGAHRAN*WLGLGS Trigger: GGAACCCAGCCCAAGCCAGCAGTTTGCTCTGTGAGC...CCCTGTATCAAAAGCAGGAATAAAGAGTGGCCTTTTTGAAGATGTAACTGTTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| 3UTR-3UTR GCA 90 bp | CTTAGTTCTTGTTCACCCCAGCAGGTTGTGCTCACAGAGCAAACTGCTGGCTTGAATGACTTTGGTATTTaGTTTTGGTTCCTGCTCCAA | + |
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Preference number: 2 (lower is better) Translates to: LSSCSPQQVVLTEQTAGLNDFGI*FWFLLQ Trigger: TTGGAGCAGGAACCAAAAGCAAATACCAAAGTCATT...CAAGCCAGCAGTTTGCTCTGTGAGCACAACCTGCTGGGGTGAACAAGAACTAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| 3UTR-3UTR GCA 90 bp | TTTTACACCCTCAGGAAAACTTTAATTGGATACTCACTCATTCAACAAACACCAGCTCACAGAGCAAACTaGTGGCTTGGGCTGGGTTCC | + |
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Preference number: 2 (lower is better) Translates to: FYTLRKTLIGYSLIQQTPAHRAN*WLGLGS Trigger: GGAACCCAGCCCAAGCCAGCAGTTTGCTCTGTGAGC...TGGTGTTTGTTGAATGAGTGAGTATCCAATTAAAGTTTTCCTGAGGGTGTAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
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| 3UTR-3UTR CCA 90 bp | GATGGGCTTCCATTAGCTAATATGCTTCCAGGTGGTGCTGACACAGCACAGATTGCAAACAAGAAAAACTaGAAATTTCAGCACAGTCCC | + |
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Preference number: 2 (lower is better) Translates to: DGLPLANMLPGGADTAQIANKKN*KFQHSP Trigger: GGGACTGTGCTGAAATTTCCAGTTTTTCTTGTTTGC...AATCTGTGCTGTGTCAGCACCACCTGGAAGCATATTAGCTAATGGAAGCCCATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
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| 3UTR-3UTR CCA 90 bp | CTTCCAAGGAACTTTCCAACAGCGGGAACTTCCTGCTACAACTGGAACTTCTCAAAGGAACTGAGACCTTaGTATGTTAGGAAAACTTCC | + |
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Preference number: 2 (lower is better) Translates to: LPRNFPTAGTSCYNWNFSKELRP*YVRKTS Trigger: GGAAGTTTTCCTAACATACCAAGGTCTCAGTTCCTT...TGAGAAGTTCCAGTTGTAGCAGGAAGTTCCCGCTGTTGGAAAGTTCCTTGGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| 3UTR CAA 90 bp | GACATGGTCTCTCCCAACGTTACCTTGCAACGCTTACAAATGACTTaGGTATTTGCTTTTGGTTCCTGCTCCAAATCACTTTTCAAATTC | + |
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Preference number: 2 (lower is better) Translates to: DMVSPNVTLQRLQMT*VFAFGSCSKSLFKF Trigger: GAATTTGAAAAGTGATTTGGAGCAGGAACCAAAAGCAAATACCAAAGTCATTTGTAAGCGTTGCAAGGTAACGTTGGGAGAGACCATGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| 3UTR CCA 72 bp | CCCAGCAGGTTGTGCTCACAGAGCAAACTGCTGGCTTaGGCTGGGTTCCGAGCTGGAGAGCTGTCCGCTGGT | + |
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Preference number: 3 (lower is better) Translates to: PSRLCSQSKLLA*AGFRAGELSAG Trigger: ACCAGCGGACAGCTCTCCAGCTCGGAACCCAGCCCAAGCCAGCAGTTTGCTCTGTGAGCACAACCTGCTGGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034986.14 ENSMUST00000121189.3 |
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| 3UTR CCA 72 bp | TTCACCCCAGCAGGTTGTGCTCACAGAGCAAACTGCTaGCTTGGGCTGGGTTCCGAGCTGGAGAGCTGTCCG | + |
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Preference number: 3 (lower is better) Translates to: FTPAGCAHRANC*LGLGSELESCP Trigger: CGGACAGCTCTCCAGCTCGGAACCCAGCCCAAGCCAGCAGTTTGCTCTGTGAGCACAACCTGCTGGGGTGAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034986.14 ENSMUST00000121189.3 |
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| 3UTR-3UTR CAA 90 bp | GGAGAGCTCCACCAGGCACTGGGCAATAATGCTCTGAAGGAACTGAGACCTTGGGAGCAAACTGCTGGCTaGGGCTGGGTTCCGAGCTGG | + |
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Preference number: 3 (lower is better) Translates to: GELHQALGNNALKELRPWEQTAG*GWVPSW Trigger: CCAGCTCGGAACCCAGCCCAAGCCAGCAGTTTGCTC...CCAAGGTCTCAGTTCCTTCAGAGCATTATTGCCCAGTGCCTGGTGGAGCTCTCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| 3UTR GCA 72 bp | TTGTTCACCCCAGCAGGTTGTGCTCACAGAGCAAACTaGTGGCTTGGGCTGGGTTCCGAGCTGGAGAGCTGT | + |
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Preference number: 3 (lower is better) Translates to: LFTPAGCAHRAN*WLGLGSELESC Trigger: ACAGCTCTCCAGCTCGGAACCCAGCCCAAGCCAGCAGTTTGCTCTGTGAGCACAACCTGCTGGGGTGAACAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034986.14 ENSMUST00000121189.3 |
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| 3UTR GCA 72 bp | TTCTGCAGCTTAGTTCTTGTTCACCCCAGCAGGTTGTaGTCACAGAGCAAACTGCTGGCTTGGGCTGGGTTC | + |
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Preference number: 3 (lower is better) Translates to: FCSLVLVHPSRL*SQSKLLAWAGF Trigger: GAACCCAGCCCAAGCCAGCAGTTTGCTCTGTGAGCACAACCTGCTGGGGTGAACAAGAACTAAGCTGCAGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
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| 3UTR-3UTR CAA 90 bp | CCCAGCAGGTTGTGCTCACAGAGCAAACTGCTGGCTTGGGCTGGGTTCCGAGCTCTTTGGTATTTGCTTTaGGTTCCTGCTCCAAATCAC | + |
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Preference number: 3 (lower is better) Translates to: PSRLCSQSKLLAWAGFRALWYLL*VPAPNH Trigger: GTGATTTGGAGCAGGAACCAAAAGCAAATACCAAAG...AGCTCGGAACCCAGCCCAAGCCAGCAGTTTGCTCTGTGAGCACAACCTGCTGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| 3UTR-3UTR CAA 90 bp | TTCCAGGCAGAGCCAGAGCCAGCTTCCAAGGAACTTTCCAACAGCGGGAACTTCTCTCCCAACGTTACCTaGCAACGCTTACAAATGACT | + |
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Preference number: 3 (lower is better) Translates to: FQAEPEPASKELSNSGNFSPNVT*QRLQMT Trigger: AGTCATTTGTAAGCGTTGCAAGGTAACGTTGGGAGA...GAAGTTCCCGCTGTTGGAAAGTTCCTTGGAAGCTGGCTCTGGCTCTGCCTGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| 3UTR-3UTR CAA 90 bp | ATGGCATTCCAGGCAGAGCCAGAGCCAGCTTCCAAGGAACTTTCCAACAGCGGGTTTGCCATCCTGACCTaGAATCGTGAATCTGAAAGT | + |
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Preference number: 3 (lower is better) Translates to: MAFQAEPEPASKELSNSGFAILT*NRESES Trigger: ACTTTCAGATTCACGATTCAAGGTCAGGATGGCAAA...CCCGCTGTTGGAAAGTTCCTTGGAAGCTGGCTCTGGCTCTGCCTGGAATGCCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| 3UTR-3UTR CAA 90 bp | ACTTCCTGCTACAACTGGAACTTCTCAGAGGTTCGATCACCAAACTGTCTGAGTGTTCACCCCAGCAGGTaGTGCTCACAGAGCAAACTG | + |
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Preference number: 3 (lower is better) Translates to: TSCYNWNFSEVRSPNCLSVHPSR*CSQSKL Trigger: CAGTTTGCTCTGTGAGCACAACCTGCTGGGGTGAAC...ACTCAGACAGTTTGGTGATCGAACCTCTGAGAAGTTCCAGTTGTAGCAGGAAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| 3UTR CCA 72 bp | GCACTGGGCAATAATGCTCTGAAGGAACTGAGACCTTaGTATGTTAGGAAAACTTCCCTCAGATGGCCGGAT | + |
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Preference number: 3 (lower is better) Translates to: ALGNNALKELRP*YVRKTSLRWPD Trigger: ATCCGGCCATCTGAGGGAAGTTTTCCTAACATACCAAGGTCTCAGTTCCTTCAGAGCATTATTGCCCAGTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| 3UTR CCA 72 bp | AGGAACTTTCCAACAGCGGGAACTTCCTGCTACAACTaGAACTTCTCAGAGGTTCGATCACCAAACTGTCTG | + |
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Preference number: 3 (lower is better) Translates to: RNFPTAGTSCYN*NFSEVRSPNCL Trigger: CAGACAGTTTGGTGATCGAACCTCTGAGAAGTTCCAGTTGTAGCAGGAAGTTCCCGCTGTTGGAAAGTTCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| 3UTR-3UTR CAA 90 bp | TTAAAGATGTGTTTTAAACAAACCCGGAGCCCTTTAAAAGTTTATTTCCCAGGAGAGCAAACTGCTGGCTaGGGCTGGGTTCCGAGCTGG | + |
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Preference number: 3 (lower is better) Translates to: LKMCFKQTRSPLKVYFPGEQTAG*GWVPSW Trigger: CCAGCTCGGAACCCAGCCCAAGCCAGCAGTTTGCTC...TCCTGGGAAATAAACTTTTAAAGGGCTCCGGGTTTGTTTAAAACACATCTTTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
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| 3UTR-3UTR CAA 90 bp | CAAACAAGAAAAACTGGAAATTTCAGCACAGTCCCCATTCTGCAGCTTAGTTCTGTTCACCCCAGCAGGTaGTGCTCACAGAGCAAACTG | + |
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Preference number: 3 (lower is better) Translates to: QTRKTGNFSTVPILQLSSVHPSR*CSQSKL Trigger: CAGTTTGCTCTGTGAGCACAACCTGCTGGGGTGAAC...AGAACTAAGCTGCAGAATGGGGACTGTGCTGAAATTTCCAGTTTTTCTTGTTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
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| 3UTR-3UTR CAA 90 bp | GATGGGCTTCCATTAGCTAATATGCTTCCAGGTGGTGCTGACACAGCACAGATTACTTTCCTTATAGCCTaGAGTTTGCAGGGACCTAAA | + |
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Preference number: 3 (lower is better) Translates to: DGLPLANMLPGGADTAQITFLIA*SLQGPK Trigger: TTTAGGTCCCTGCAAACTCAAGGCTATAAGGAAAGT...AATCTGTGCTGTGTCAGCACCACCTGGAAGCATATTAGCTAATGGAAGCCCATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
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| 3UTR TCA 72 bp | ACTGGAACTTCTCAGAGGTTCGATCACCAAACTGTCTaGGTTCAAAACCCAGAGCAAGATGTACACTTTGCC | + |
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Preference number: 3 (lower is better) Translates to: TGTSQRFDHQTV*VQNPEQDVHFA Trigger: GGCAAAGTGTACATCTTGCTCTGGGTTTTGAACTCAGACAGTTTGGTGATCGAACCTCTGAGAAGTTCCAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| 3UTR CCA 72 bp | GTGCTGACACAGCACAGATTTGAATATTCCTCTCTGTaGGAAGTAGAGGTGCAACTTCTATACTTAACCTGC | + |
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Preference number: 3 (lower is better) Translates to: VLTQHRFEYSSL*EVEVQLLYLTC Trigger: GCAGGTTAAGTATAGAAGTTGCACCTCTACTTCCCACAGAGAGGAATATTCAAATCTGTGCTGTGTCAGCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
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| 3UTR GCA 72 bp | CTGTGGGAAGTAGAGGTGCAACTTCTATACTTAACCTaGTACTACAACTTTCCTTATAGCCTTGAGTTTGCA | + |
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Preference number: 3 (lower is better) Translates to: LWEVEVQLLYLT*YYNFPYSLEFA Trigger: TGCAAACTCAAGGCTATAAGGAAAGTTGTAGTAGCAGGTTAAGTATAGAAGTTGCACCTCTACTTCCCACAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
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| 3UTR CCA 72 bp | CCTCTGTCATGTAAAATTTGGTTGTTTCTGATGACATaGTCTCTCCCAACGTTACCTTGCAACGCTTACAAA | + |
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Preference number: 3 (lower is better) Translates to: PLSCKIWLFLMT*SLPTLPCNAYK Trigger: TTTGTAAGCGTTGCAAGGTAACGTTGGGAGAGACCATGTCATCAGAAACAACCAAATTTTACATGACAGAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| 3UTR CAA 72 bp | CCCCAGCAGGTTGTGCTCACAGAGCAAACTGCTGGCTaGGGCTGGGTTCCGAGCTGGAGAGCTGTCCGCTGG | + |
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Preference number: 4 (lower is better) Translates to: PQQVVLTEQTAG*GWVPSWRAVRW Trigger: CCAGCGGACAGCTCTCCAGCTCGGAACCCAGCCCAAGCCAGCAGTTTGCTCTGTGAGCACAACCTGCTGGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034986.14 ENSMUST00000121189.3 |
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| CDS-3UTR GCA 90 bp | CACCCCAGCAGGTTGTGCTCACAGAGCAAACTGCTGGCTTGGGCTGGGTTCCGATCGCCACTGATATACTaGAGCCCGCCACACGAGGAA | + |
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Preference number: 4 (lower is better) Translates to: HPSRLCSQSKLLAWAGFRSPLIY*SPPHEE Trigger: TTCCTCGTGTGGCGGGCTGCAGTATATCAGTGGCGA...TCGGAACCCAGCCCAAGCCAGCAGTTTGCTCTGTGAGCACAACCTGCTGGGGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034986.14 ENSMUST00000121189.3 |
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| CDS-3UTR TCA 90 bp | TTGTTCACCCCAGCAGGTTGTGCTCACAGAGCAAACTGCTGGCTTGGGCTGGGTAGGAAGGTACAAGTCTaGCCCCTGCTGGAAGTCGGA | + |
|
Preference number: 4 (lower is better) Translates to: LFTPAGCAHRANCWLGLGRKVQV*PLLEVG Trigger: TCCGACTTCCAGCAGGGGTCAGACTTGTACCTTCCT...ACCCAGCCCAAGCCAGCAGTTTGCTCTGTGAGCACAACCTGCTGGGGTGAACAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034986.14 ENSMUST00000121189.3 |
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| CDS-3UTR CCA 90 bp | CTTAGTTCTTGTTCACCCCAGCAGGTTGTGCTCACAGAGCAAACTGCTGGCTTGGCAAAGGGGTCGGGATaGCAGCACCACTCTCCGACC | + |
|
Preference number: 4 (lower is better) Translates to: LSSCSPQQVVLTEQTAGLAKGSG*QHHSPT Trigger: GGTCGGAGAGTGGTGCTGCCATCCCGACCCCTTTGC...CAAGCCAGCAGTTTGCTCTGTGAGCACAACCTGCTGGGGTGAACAAGAACTAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034986.14 ENSMUST00000121189.3 |
||
| CDS-3UTR TCA 90 bp | GGAGAGCTCCACCAGGCACTGGGCAATAATGCTCTGAAGGAACTGAGACCTTGGAGGAAGGTACAAGTCTaGCCCCTGCTGGAAGTCGGA | + |
|
Preference number: 4 (lower is better) Translates to: GELHQALGNNALKELRPWRKVQV*PLLEVG Trigger: TCCGACTTCCAGCAGGGGTCAGACTTGTACCTTCCT...CCAAGGTCTCAGTTCCTTCAGAGCATTATTGCCCAGTGCCTGGTGGAGCTCTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
||
| CDS-3UTR TCA 90 bp | ACAGAGCAAACTGCTGGCTTGGGCTGGGTTCCGAGCTGGAGAGCTGTCCGCTGGCTTTATTCCTGCTTTTaGTACAGGGCTGGTAGAGGA | + |
|
Preference number: 4 (lower is better) Translates to: TEQTAGLGWVPSWRAVRWLYSCF*YRAGRG Trigger: TCCTCTACCAGCCCTGTATCAAAAGCAGGAATAAAG...CCAGCGGACAGCTCTCCAGCTCGGAACCCAGCCCAAGCCAGCAGTTTGCTCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
||
| 3UTR CAA 72 bp | CCATTCTGCAGCTTAGTTCTTGTTCACCCCAGCAGGTaGTGCTCACAGAGCAAACTGCTGGCTTGGGCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: PFCSLVLVHPSR*CSQSKLLAWAG Trigger: CCCAGCCCAAGCCAGCAGTTTGCTCTGTGAGCACAACCTGCTGGGGTGAACAAGAACTAAGCTGCAGAATGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
||
| CDS-3UTR TCA 90 bp | CCCAGCAGGTTGTGCTCACAGAGCAAACTGCTGGCTTGGGCTGGGTTCCGAGCTGATCACCAAACTGTCTaGGTTCAAAACCCAGAGCAA | + |
|
Preference number: 4 (lower is better) Translates to: PSRLCSQSKLLAWAGFRADHQTV*VQNPEQ Trigger: TTGCTCTGGGTTTTGAACTCAGACAGTTTGGTGATC...AGCTCGGAACCCAGCCCAAGCCAGCAGTTTGCTCTGTGAGCACAACCTGCTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
||
| CDS-3UTR GCA 90 bp | TTGTTCACCCCAGCAGGTTGTGCTCACAGAGCAAACTGCTGGCTTGGGCTGGGTATGGAAATGTCCAGGTaGATCCCTCCTTCATCTGGC | + |
|
Preference number: 4 (lower is better) Translates to: LFTPAGCAHRANCWLGLGMEMSR*IPPSSG Trigger: GCCAGATGAAGGAGGGATGCACCTGGACATTTCCAT...ACCCAGCCCAAGCCAGCAGTTTGCTCTGTGAGCACAACCTGCTGGGGTGAACAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034986.14 ENSMUST00000121189.3 |
||
| CDS-3UTR GCA 90 bp | TCACCCCAGCAGGTTGTGCTCACAGAGCAAACTGCTGGCTTGGGCTGGGTTCCGGCAAGATGTACACTTTaGCATCCTGACCTTGAATCG | + |
|
Preference number: 4 (lower is better) Translates to: SPQQVVLTEQTAGLGWVPARCTL*HPDLES Trigger: CGATTCAAGGTCAGGATGGCAAAGTGTACATCTTGC...CGGAACCCAGCCCAAGCCAGCAGTTTGCTCTGTGAGCACAACCTGCTGGGGTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
||
| CDS-3UTR CCA 90 bp | CACCCCAGCAGGTTGTGCTCACAGAGCAAACTGCTGGCTTGGGCTGGGTTCCGATTCAAAAAGGCCACCTaGAAGGAATTCATTTGGCGA | + |
|
Preference number: 4 (lower is better) Translates to: HPSRLCSQSKLLAWAGFRFKKAT*KEFIWR Trigger: TCGCCAAATGAATTCCTTCCAGGTGGCCTTTTTGAA...TCGGAACCCAGCCCAAGCCAGCAGTTTGCTCTGTGAGCACAACCTGCTGGGGTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
||
| CDS-3UTR TCA 90 bp | CCATTCTGCAGCTTAGTTCTTGTTCACCCCAGCAGGTTGTGCTCACAGAGCAAAGCTGGTAGAGGACTTTaGTGGCATTCCAGGCAGAGC | + |
|
Preference number: 4 (lower is better) Translates to: PFCSLVLVHPSRLCSQSKAGRGL*WHSRQS Trigger: GCTCTGCCTGGAATGCCATCAAAGTCCTCTACCAGC...TTTGCTCTGTGAGCACAACCTGCTGGGGTGAACAAGAACTAAGCTGCAGAATGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
||
| CDS-3UTR CCA 90 bp | AACCCAGAGCAAGATGTACACTTTGCCATCCTGACCTTGAATCGTGAATCTGAAGCAAAGGGGTCGGGATaGCAGCACCACTCTCCGACC | + |
|
Preference number: 4 (lower is better) Translates to: NPEQDVHFAILTLNRESEAKGSG*QHHSPT Trigger: GGTCGGAGAGTGGTGCTGCCATCCCGACCCCTTTGC...TTCAGATTCACGATTCAAGGTCAGGATGGCAAAGTGTACATCTTGCTCTGGGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
||
| CDS-3UTR CCA 90 bp | ACAGAGCAAACTGCTGGCTTGGGCTGGGTTCCGAGCTGGAGAGCTGTCCGCTGGTTTGGTATTTGCTTTTaGTTCCTGCTCCAAATCACT | + |
|
Preference number: 4 (lower is better) Translates to: TEQTAGLGWVPSWRAVRWFGICF*FLLQIT Trigger: AGTGATTTGGAGCAGGAACCAAAAGCAAATACCAAA...CCAGCGGACAGCTCTCCAGCTCGGAACCCAGCCCAAGCCAGCAGTTTGCTCTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
||
| CDS-3UTR TCA 90 bp | GCAGGTTGTGCTCACAGAGCAAACTGCTGGCTTGGGCTGGGTTCCGAGCTGGAGTGCAACGCTTACAAATaGCTTTGGTATTTGCTTTTG | + |
|
Preference number: 4 (lower is better) Translates to: AGCAHRANCWLGLGSELECNAYK*LWYLLL Trigger: CAAAAGCAAATACCAAAGTCATTTGTAAGCGTTGCA...CTCCAGCTCGGAACCCAGCCCAAGCCAGCAGTTTGCTCTGTGAGCACAACCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
||
| CDS-3UTR GCA 90 bp | CTTCCAAGGAACTTTCCAACAGCGGGAACTTCCTGCTACAACTGGAACTTCTCATCGCCACTGATATACTaGAGCCCGCCACACGAGGAA | + |
|
Preference number: 4 (lower is better) Translates to: LPRNFPTAGTSCYNWNFSSPLIY*SPPHEE Trigger: TTCCTCGTGTGGCGGGCTGCAGTATATCAGTGGCGA...TGAGAAGTTCCAGTTGTAGCAGGAAGTTCCCGCTGTTGGAAAGTTCCTTGGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
||
| CDS-3UTR GCA 90 bp | GCAGGTTGTGCTCACAGAGCAAACTGCTGGCTTGGGCTGGGTTCCGAGCTGGAGAATGACTTTGGTATTTaGTTTTGGTTCCTGCTCCAA | + |
|
Preference number: 4 (lower is better) Translates to: AGCAHRANCWLGLGSELENDFGI*FWFLLQ Trigger: TTGGAGCAGGAACCAAAAGCAAATACCAAAGTCATT...CTCCAGCTCGGAACCCAGCCCAAGCCAGCAGTTTGCTCTGTGAGCACAACCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
||
| CDS-3UTR GCA 90 bp | GCAGGTTGTGCTCACAGAGCAAACTGCTGGCTTGGGCTGGGTTCCGAGCTGGAGTTTGCTTTTGGTTCCTaGTCCAAATCACTTTTCAAA | + |
|
Preference number: 4 (lower is better) Translates to: AGCAHRANCWLGLGSELEFAFGS*SKSLFK Trigger: TTTGAAAAGTGATTTGGAGCAGGAACCAAAAGCAAA...CTCCAGCTCGGAACCCAGCCCAAGCCAGCAGTTTGCTCTGTGAGCACAACCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
||
| CDS-3UTR CCA 90 bp | TCCCAGGATTTAGAGTGGTTAACATTCAGCTCCCCAGTGAAGTTCCTCGCTGCGGGGAGGCATTGTTCCTaGATAGTATTAGCAGCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: SQDLEWLTFSSPVKFLAAGRHCS*IVLAAA Trigger: AGCTGCTGCTAATACTATCCAGGAACAATGCCTCCC...CGCAGCGAGGAACTTCACTGGGGAGCTGAATGTTAACCACTCTAAATCCTGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
||
| CDS-3UTR CCA 90 bp | ATGGTCTCTCCCAACGTTACCTTGCAACGCTTACAAATGACTTTGGTATTTGCTGAGAGGTGGGCGTTATaGAAATGTCCAGGTGCATCC | + |
|
Preference number: 4 (lower is better) Translates to: MVSPNVTLQRLQMTLVFAERWAL*KCPGAS Trigger: GGATGCACCTGGACATTTCCATAACGCCCACCTCTC...AGCAAATACCAAAGTCATTTGTAAGCGTTGCAAGGTAACGTTGGGAGAGACCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
||
| CDS-3UTR CCA 90 bp | ACAAGAAAAACTGGAAATTTCAGCACAGTCCCCATTCTGCAGCTTAGTTCTTGTGAGAGGTGGGCGTTATaGAAATGTCCAGGTGCATCC | + |
|
Preference number: 4 (lower is better) Translates to: TRKTGNFSTVPILQLSSCERWAL*KCPGAS Trigger: GGATGCACCTGGACATTTCCATAACGCCCACCTCTC...ACAAGAACTAAGCTGCAGAATGGGGACTGTGCTGAAATTTCCAGTTTTTCTTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
||
| CDS-3UTR CCA 90 bp | AATTTCAGCACAGTCCCCATTCTGCAGCTTAGTTCTTGTTCACCCCAGCAGGTTTTGTTTCTGATGACATaGTCTCTCCCAACGTTACCT | + |
|
Preference number: 4 (lower is better) Translates to: NFSTVPILQLSSCSPQQVLFLMT*SLPTLP Trigger: AGGTAACGTTGGGAGAGACCATGTCATCAGAAACAA...AACCTGCTGGGGTGAACAAGAACTAAGCTGCAGAATGGGGACTGTGCTGAAATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
||
| CDS-3UTR CCA 90 bp | GATGGGCTTCCATTAGCTAATATGCTTCCAGGTGGTGCTGACACAGCACAGATTAAGGAACTGAGACCTTaGTATGTTAGGAAAACTTCC | + |
|
Preference number: 4 (lower is better) Translates to: DGLPLANMLPGGADTAQIKELRP*YVRKTS Trigger: GGAAGTTTTCCTAACATACCAAGGTCTCAGTTCCTT...AATCTGTGCTGTGTCAGCACCACCTGGAAGCATATTAGCTAATGGAAGCCCATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
||
| 3UTR CAA 72 bp | AACCCAGAGCAAGATGTACACTTTGCCATCCTGACCTaGAATCGTGAATCTGAAAGTACTTCTAGCAGAGGA | + |
|
Preference number: 4 (lower is better) Translates to: NPEQDVHFAILT*NRESESTSSRG Trigger: TCCTCTGCTAGAAGTACTTTCAGATTCACGATTCAAGGTCAGGATGGCAAAGTGTACATCTTGCTCTGGGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| CDS-3UTR CCA 90 bp | TTAAAGATGTGTTTTAAACAAACCCGGAGCCCTTTAAAAGTTTATTTCCCAGGAGGCAGGGTTAAAGGGTaGACGCTGATGTCACCTTCC | + |
|
Preference number: 4 (lower is better) Translates to: LKMCFKQTRSPLKVYFPGGRVKG*TLMSPS Trigger: GGAAGGTGACATCAGCGTCCACCCTTTAACCCTGCC...TCCTGGGAAATAAACTTTTAAAGGGCTCCGGGTTTGTTTAAAACACATCTTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
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| CDS-3UTR GCA 90 bp | CAGCTTCAACAGTTACATCTTCAAAAAGGCCACTCTTTATTCCTGCTTTTGATAATGGAAATGTCCAGGTaGATCCCTCCTTCATCTGGC | + |
|
Preference number: 4 (lower is better) Translates to: QLQQLHLQKGHSLFLLLIMEMSR*IPPSSG Trigger: GCCAGATGAAGGAGGGATGCACCTGGACATTTCCAT...TATCAAAAGCAGGAATAAAGAGTGGCCTTTTTGAAGATGTAACTGTTGAAGCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| CDS-3UTR GCA 90 bp | GTAGAGGTGCAACTTCTATACTTAACCTGCTACTACAACTTTCCTTATAGCCTTACAGCGGGAACTTCCTaGTACAACTGGAACTTCTCA | + |
|
Preference number: 4 (lower is better) Translates to: VEVQLLYLTCYYNFPYSLTAGTS*YNWNFS Trigger: TGAGAAGTTCCAGTTGTAGCAGGAAGTTCCCGCTGT...AAGGCTATAAGGAAAGTTGTAGTAGCAGGTTAAGTATAGAAGTTGCACCTCTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
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| CDS-3UTR CCA 90 bp | ACAAGAAAAACTGGAAATTTCAGCACAGTCCCCATTCTGCAGCTTAGTTCTTGTACTTCCTGCTACAACTaGAACTTCTCAGAGGTTCGA | + |
|
Preference number: 4 (lower is better) Translates to: TRKTGNFSTVPILQLSSCTSCYN*NFSEVR Trigger: TCGAACCTCTGAGAAGTTCCAGTTGTAGCAGGAAGT...ACAAGAACTAAGCTGCAGAATGGGGACTGTGCTGAAATTTCCAGTTTTTCTTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
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| CDS TCA 90 bp | CTCCGACCAGAGCGCTCCAGTTCTCACTGGGCAGGGGGAGCACCCTaGGGAGTTTCGTGGGCTGGATTCAGCCTGGACCCGCAAGCGCAG | + |
|
Preference number: 5 (lower is better) Translates to: LRPERSSSHWAGGAP*GVSWAGFSLDPQAQ Trigger: CTGCGCTTGCGGGTCCAGGCTGAATCCAGCCCACGAAACTCCTCAGGGTGCTCCCCCTGCCCAGTGAGAACTGGAGCGCTCTGGTCGGAG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| CDS GCA 90 bp | TGCATCCCTCCTTCATCTGGCCCACCCAGGATTAGCAGCGCACTCTaGAGCCGTCTCCGCACTTCCAGGAACACGCGCGTTTCCGCCGCA | + |
|
Preference number: 5 (lower is better) Translates to: CIPPSSGPPRISSAL*SRLRTSRNTRVSAA Trigger: TGCGGCGGAAACGCGCGTGTTCCTGGAAGTGCGGAGACGGCTGCAGAGTGCGCTGCTAATCCTGGGTGGGCCAGATGAAGGAGGGATGCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034986.14 ENSMUST00000121189.3 |
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| CDS CCA 90 bp | CAGTTCTCACTGGGCAGGGGGAGCACCCTGAGGAGTTTCGTGGGCTaGATTCAGCCTGGACCCGCAAGCGCAGATGTAAACCATCGCCAC | + |
|
Preference number: 5 (lower is better) Translates to: QFSLGRGSTLRSFVG*IQPGPASADVNHRH Trigger: GTGGCGATGGTTTACATCTGCGCTTGCGGGTCCAGGCTGAATCCAGCCCACGAAACTCCTCAGGGTGCTCCCCCTGCCCAGTGAGAACTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| CDS CCA 90 bp | GGGCAGGGGGAGCACCCTGAGGAGTTTCGTGGGCTGGATTCAGCCTaGACCCGCAAGCGCAGATGTAAACCATCGCCACTGATATACTGC | + |
|
Preference number: 5 (lower is better) Translates to: GQGEHPEEFRGLDSA*TRKRRCKPSPLIYC Trigger: GCAGTATATCAGTGGCGATGGTTTACATCTGCGCTTGCGGGTCCAGGCTGAATCCAGCCCACGAAACTCCTCAGGGTGCTCCCCCTGCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
||
| CDS GCA 90 bp | GATATACTGCAGCCCGCCACACGAGGAAGGTACAAGTCTGACCCCTaGTGGAAGTCGGATCTCGGTGCAGCCGTCAGGGGTTCTCACCAA | + |
|
Preference number: 5 (lower is better) Translates to: DILQPATRGRYKSDP*WKSDLGAAVRGSHQ Trigger: TTGGTGAGAACCCCTGACGGCTGCACCGAGATCCGACTTCCAGCAGGGGTCAGACTTGTACCTTCCTCGTGTGGCGGGCTGCAGTATATC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034986.14 ENSMUST00000121189.3 |
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| CDS CCA 90 bp | AGGAATTCATTTGGCGAAGGGACAGAGGCAGGGAGGCATTGTTCCTaGATAGTATTAGCAGCAGCTCCAAACAGGTTGCAGAGGGCAGGG | + |
|
Preference number: 5 (lower is better) Translates to: RNSFGEGTEAGRHCS*IVLAAAPNRLQRAG Trigger: CCCTGCCCTCTGCAACCTGTTTGGAGCTGCTGCTAATACTATCCAGGAACAATGCCTCCCTGCCTCTGTCCCTTCGCCAAATGAATTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
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| CDS-3UTR CAA 90 bp | TCACCCCAGCAGGTTGTGCTCACAGAGCAAACTGCTGGCTTGGGCTGGGTTCCGTTTGCCATCCTGACCTaGAATCGTGAATCTGAAAGT | + |
|
Preference number: 5 (lower is better) Translates to: SPQQVVLTEQTAGLGWVPFAILT*NRESES Trigger: ACTTTCAGATTCACGATTCAAGGTCAGGATGGCAAA...CGGAACCCAGCCCAAGCCAGCAGTTTGCTCTGTGAGCACAACCTGCTGGGGTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
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| CDS-3UTR CAA 90 bp | TCCCCAGTGAAGTTCCTCGCTGCGTTCACACAGGACAGATGGGCTTCCATTAGCAGAGGCAGGGAGGCATaGTTCCTGGATAGTATTAGC | + |
|
Preference number: 5 (lower is better) Translates to: SPVKFLAAFTQDRWASISRGREA*FLDSIS Trigger: GCTAATACTATCCAGGAACAATGCCTCCCTGCCTCT...GCTAATGGAAGCCCATCTGTCCTGTGTGAACGCAGCGAGGAACTTCACTGGGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
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| CDS CCA 90 bp | ATTAGCAGCAGCTCCAAACAGGTTGCAGAGGGCAGGGTTAAAGGGTaGACGCTGATGTCACCTTCCCAGGAGCTAGCAAGCTCTTTATTC | + |
|
Preference number: 5 (lower is better) Translates to: ISSSSKQVAEGRVKG*TLMSPSQELASSLF Trigger: GAATAAAGAGCTTGCTAGCTCCTGGGAAGGTGACATCAGCGTCCACCCTTTAACCCTGCCCTCTGCAACCTGTTTGGAGCTGCTGCTAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
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| CDS-3UTR CAA 90 bp | GGTTCCGAGCTGGAGAGCTGTCCGCTGGTAGACCAGAAAGCCGCAGCTTCAACAGCAACATTCTTGGGCTaGCAAGCTTTGATTAAACAC | + |
|
Preference number: 5 (lower is better) Translates to: GSELESCPLVDQKAAASTATFLG*QALIKH Trigger: GTGTTTAATCAAAGCTTGCAAGCCCAAGAATGTTGC...TGTTGAAGCTGCGGCTTTCTGGTCTACCAGCGGACAGCTCTCCAGCTCGGAACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
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| CDS TCA 90 bp | ATAAAAGGTGCAACATTCTTGGGCTTGCAAGCTTTGATTAAACACTaGAATCGGCTGTGGGCTGGATTCAGCCTGGACCCGCAAGCGCAG | + |
|
Preference number: 5 (lower is better) Translates to: IKGATFLGLQALIKH*NRLWAGFSLDPQAQ Trigger: CTGCGCTTGCGGGTCCAGGCTGAATCCAGCCCACAGCCGATTTCAGTGTTTAATCAAAGCTTGCAAGCCCAAGAATGTTGCACCTTTTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
||
| CDS-3UTR CAA 90 bp | GATGGGCTTCCATTAGCTAATATGCTTCCAGGTGGTGCTGACACAGCACAGATTCTGGAAGGAATTCATTaGGCGAAGGGACAGAGGCAG | + |
|
Preference number: 5 (lower is better) Translates to: DGLPLANMLPGGADTAQILEGIH*AKGQRQ Trigger: CTGCCTCTGTCCCTTCGCCAAATGAATTCCTTCCAG...AATCTGTGCTGTGTCAGCACCACCTGGAAGCATATTAGCTAATGGAAGCCCATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
||
| CDS-3UTR CAA 90 bp | TCCCAGGATTTAGAGTGGTTAACATTCAGCTCCCCAGTGAAGTTCCTCGCTGCGCTTTGGTATTTGCTTTaGGTTCCTGCTCCAAATCAC | + |
|
Preference number: 5 (lower is better) Translates to: SQDLEWLTFSSPVKFLAALWYLL*VPAPNH Trigger: GTGATTTGGAGCAGGAACCAAAAGCAAATACCAAAG...CGCAGCGAGGAACTTCACTGGGGAGCTGAATGTTAACCACTCTAAATCCTGGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
||
| CDS-3UTR CAA 90 bp | CCATTCTGCAGCTTAGTTCTTGTTCACCCCAGCAGGTTGTGCTCACAGAGCAAATCTCCCAACGTTACCTaGCAACGCTTACAAATGACT | + |
|
Preference number: 5 (lower is better) Translates to: PFCSLVLVHPSRLCSQSKSPNVT*QRLQMT Trigger: AGTCATTTGTAAGCGTTGCAAGGTAACGTTGGGAGA...TTTGCTCTGTGAGCACAACCTGCTGGGGTGAACAAGAACTAAGCTGCAGAATGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
||
| CDS-3UTR CAA 90 bp | AGAAAAACTGGAAATTTCAGCACAGTCCCCATTCTGCAGCTTAGTTCTTGTTCAGCAGCTCCAAACAGGTaGCAGAGGGCAGGGTTAAAG | + |
|
Preference number: 5 (lower is better) Translates to: RKTGNFSTVPILQLSSCSAAPNR*QRAGLK Trigger: CTTTAACCCTGCCCTCTGCAACCTGTTTGGAGCTGC...TGAACAAGAACTAAGCTGCAGAATGGGGACTGTGCTGAAATTTCCAGTTTTTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
||
| CDS-3UTR CAA 90 bp | TTTTACACCCTCAGGAAAACTTTAATTGGATACTCACTCATTCAACAAACACCAAAAGGTGCAACATTCTaGGGCTTGCAAGCTTTGATT | + |
|
Preference number: 5 (lower is better) Translates to: FYTLRKTLIGYSLIQQTPKGATF*GLQALI Trigger: AATCAAAGCTTGCAAGCCCAAGAATGTTGCACCTTT...TGGTGTTTGTTGAATGAGTGAGTATCCAATTAAAGTTTTCCTGAGGGTGTAAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
||
| CDS TCA 72 bp | GAGCGCTCCAGTTCTCACTGGGCAGGGGGAGCACCCTaGGGAGTTTCGTGGGCTGGATTCAGCCTGGACCCG | + |
|
Preference number: 6 (lower is better) Translates to: ERSSSHWAGGAP*GVSWAGFSLDP Trigger: CGGGTCCAGGCTGAATCCAGCCCACGAAACTCCTCAGGGTGCTCCCCCTGCCCAGTGAGAACTGGAGCGCTC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
||
| CDS GCA 72 bp | CAGCCCGCCACACGAGGAAGGTACAAGTCTGACCCCTaGTGGAAGTCGGATCTCGGTGCAGCCGTCAGGGGT | + |
|
Preference number: 6 (lower is better) Translates to: QPATRGRYKSDP*WKSDLGAAVRG Trigger: ACCCCTGACGGCTGCACCGAGATCCGACTTCCAGCAGGGGTCAGACTTGTACCTTCCTCGTGTGGCGGGCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034986.14 ENSMUST00000121189.3 |
||
| CDS GCA 72 bp | CCTTCATCTGGCCCACCCAGGATTAGCAGCGCACTCTaGAGCCGTCTCCGCACTTCCAGGAACACGCGCGTT | + |
|
Preference number: 6 (lower is better) Translates to: PSSGPPRISSAL*SRLRTSRNTRV Trigger: AACGCGCGTGTTCCTGGAAGTGCGGAGACGGCTGCAGAGTGCGCTGCTAATCCTGGGTGGGCCAGATGAAGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034986.14 ENSMUST00000121189.3 |
||
| CDS CCA 72 bp | CCCGCCACACGAGGAAGGTACAAGTCTGACCCCTGCTaGAAGTCGGATCTCGGTGCAGCCGTCAGGGGTTCT | + |
|
Preference number: 6 (lower is better) Translates to: PATRGRYKSDPC*KSDLGAAVRGS Trigger: AGAACCCCTGACGGCTGCACCGAGATCCGACTTCCAGCAGGGGTCAGACTTGTACCTTCCTCGTGTGGCGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034986.14 ENSMUST00000121189.3 |
||
| CDS CCA 72 bp | CTGGGCAGGGGGAGCACCCTGAGGAGTTTCGTGGGCTaGATTCAGCCTGGACCCGCAAGCGCAGATGTAAAC | + |
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Preference number: 6 (lower is better) Translates to: LGRGSTLRSFVG*IQPGPASADVN Trigger: GTTTACATCTGCGCTTGCGGGTCCAGGCTGAATCCAGCCCACGAAACTCCTCAGGGTGCTCCCCCTGCCCAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000121189.3 |
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| CDS TCA 72 bp | TATACTGCAGCCCGCCACACGAGGAAGGTACAAGTCTaGCCCCTGCTGGAAGTCGGATCTCGGTGCAGCCGT | + |
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Preference number: 6 (lower is better) Translates to: YTAARHTRKVQV*PLLEVGSRCSR Trigger: ACGGCTGCACCGAGATCCGACTTCCAGCAGGGGTCAGACTTGTACCTTCCTCGTGTGGCGGGCTGCAGTATA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034986.14 ENSMUST00000121189.3 |
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| CDS TCA 72 bp | CCTGGACCCGCAAGCGCAGATGTAAACCATCGCCACTaGTATACTGCAGCCCGCCACACGAGGAAGGTACAA | + |
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Preference number: 6 (lower is better) Translates to: PGPASADVNHRH*YTAARHTRKVQ Trigger: TTGTACCTTCCTCGTGTGGCGGGCTGCAGTATATCAGTGGCGATGGTTTACATCTGCGCTTGCGGGTCCAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034986.14 ENSMUST00000121189.3 |
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| CDS CCA 72 bp | AGCTCCAAACAGGTTGCAGAGGGCAGGGTTAAAGGGTaGACGCTGATGTCACCTTCCCAGGAGCTAGCAAGC | + |
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Preference number: 6 (lower is better) Translates to: SSKQVAEGRVKG*TLMSPSQELAS Trigger: GCTTGCTAGCTCCTGGGAAGGTGACATCAGCGTCCACCCTTTAACCCTGCCCTCTGCAACCTGTTTGGAGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
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| CDS CCA 72 bp | TTAAACACTGAAATCGGCTGTGGGCTGGATTCAGCCTaGACCCGCAAGCGCAGATGTAAACCATCGCCACTG | + |
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Preference number: 6 (lower is better) Translates to: LNTEIGCGLDSA*TRKRRCKPSPL Trigger: CAGTGGCGATGGTTTACATCTGCGCTTGCGGGTCCAGGCTGAATCCAGCCCACAGCCGATTTCAGTGTTTAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
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| CDS CAA 90 bp | ACCTGGAAGGAATTCATTTGGCGAAGGGACAGAGGCAGGGAGGCATaGTTCCTGGATAGTATTAGCAGCAGCTCCAAACAGGTTGCAGAG | + |
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Preference number: 6 (lower is better) Translates to: TWKEFIWRRDRGREA*FLDSISSSSKQVAE Trigger: CTCTGCAACCTGTTTGGAGCTGCTGCTAATACTATCCAGGAACAATGCCTCCCTGCCTCTGTCCCTTCGCCAAATGAATTCCTTCCAGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
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| CDS CCA 72 bp | TACATCTTCAAAAAGGCCACCTGGAAGGAATTCATTTaGCGAAGGGACAGAGGCAGGGAGGCATTGTTCCTG | + |
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Preference number: 6 (lower is better) Translates to: YIFKKATWKEFI*RRDRGREALFL Trigger: CAGGAACAATGCCTCCCTGCCTCTGTCCCTTCGCCAAATGAATTCCTTCCAGGTGGCCTTTTTGAAGATGTA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
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| CDS CAA 72 bp | TTACATCTTCAAAAAGGCCACCTGGAAGGAATTCATTaGGCGAAGGGACAGAGGCAGGGAGGCATTGTTCCT | + |
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Preference number: 6 (lower is better) Translates to: LHLQKGHLEGIH*AKGQRQGGIVP Trigger: AGGAACAATGCCTCCCTGCCTCTGTCCCTTCGCCAAATGAATTCCTTCCAGGTGGCCTTTTTGAAGATGTAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034986.14 |
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