Pregenerated sensors for UBE2C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001403Ensembl transcript IDs: ENSMUST00000001439.7, ENSMUST00000088248.13
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | GCGAAGAGGAACTGGCTGAGTGCTTCCGCATCTTTGACAGGTGCGTaGGGCTTCCGGGATCCTGGACCTGAGAGCAGATGGAGCCCGTGG | + |
Preference number: 1 (lower is better) Translates to: AKRNWLSASASLTGA*GFRDPGPESRWSPW Trigger: CCACGGGCTCCATCTGCTCTCAGGTCCAGGATCCCGGAAGCCCCACGCACCTGTCAAAGATGCGGAAGCACTCAGCCAGTTCCTCTTCGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR CCA 90 bp | GGCAGACACCCACCAAAGAGGAATTGGATGCCATCATCGAGGAGGTaGACGAGGATGGTGAGTTGGGCTCCTCCAGGGCAGGGGACCGGG | + |
Preference number: 1 (lower is better) Translates to: GRHPPKRNWMPSSRR*TRMVSWAPPGQGTG Trigger: CCCGGTCCCCTGCCCTGGAGGAGCCCAACTCACCATCCTCGTCCACCTCCTCGATGATGGCATCCAATTCCTCTTTGGTGGGTGTCTGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR GCA 90 bp | AGGGCGTTCAGTAAGGAGACGGTCTTTGTTCGTGTCCATCCAGACTaGAGGTCCCCTGGGCGTGGGCAGCTCCACCTTTGCTTTCCCTGC | + |
Preference number: 1 (lower is better) Translates to: RAFSKETVFVRVHPD*RSPGRGQLHLCFPC Trigger: GCAGGGAAAGCAAAGGTGGAGCTGCCCACGCCCAGGGGACCTGCAGTCTGGATGGACACGAACAAAGACCGTCTCCTTACTGAACGCCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR GCA 90 bp | GAGGAGAGAGGCACAGGGCACCTTGGGCTAAGCAGGCCCCACATCTaGCAACCCCGATCCTTGCAGGCAGCGGTACTATCGACTTTGAAG | + |
Preference number: 1 (lower is better) Translates to: EERGTGHLGLSRPHI*QPRSLQAAVLSTLK Trigger: CTTCAAAGTCGATAGTACCGCTGCCTGCAAGGATCGGGGTTGGCAGATGTGGGGCCTGCTTAGCCCAAGGTGCCCTGTGCCTCTCTCCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR GCA 90 bp | CCCTTTGGCACTGGGGATGGGCACCAACGGGTACCTGGGAGGTACTaGTGGTTTGGAGTGGTTCTGGAGGACCCAGGGGCTCTTCCTAAT | + |
Preference number: 1 (lower is better) Translates to: PFGTGDGHQRVPGRY*WFGVVLEDPGALPN Trigger: ATTAGGAAGAGCCCCTGGGTCCTCCAGAACCACTCCAAACCAGCAGTACCTCCCAGGTACCCGTTGGTGCCCATCCCCAGTGCCAAAGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR CCA 90 bp | GGCACCAACGGGTACCTGGGAGGTACTGCTGGTTTGGAGTGGTTCTaGAGGACCCAGGGGCTCTTCCTAATACAAGAGGGGGCTAGGGAG | + |
Preference number: 1 (lower is better) Translates to: GTNGYLGGTAGLEWF*RTQGLFLIQEGARE Trigger: CTCCCTAGCCCCCTCTTGTATTAGGAAGAGCCCCTGGGTCCTCCAGAACCACTCCAAACCAGCAGTACCTCCCAGGTACCCGTTGGTGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR CCA 90 bp | GGGATGGGCACCAACGGGTACCTGGGAGGTACTGCTGGTTTGGAGTaGTTCTGGAGGACCCAGGGGCTCTTCCTAATACAAGAGGGGGCT | + |
Preference number: 1 (lower is better) Translates to: GMGTNGYLGGTAGLE*FWRTQGLFLIQEGA Trigger: AGCCCCCTCTTGTATTAGGAAGAGCCCCTGGGTCCTCCAGAACCACTCCAAACCAGCAGTACCTCCCAGGTACCCGTTGGTGCCCATCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR TCA 90 bp | AGACGGACCAACAGGCTGAGGCCAGGTCCTACCTCAGCGAGGAGATaGTCGCTGGTGAGTAGAGCTAGCCATTGGGAGAGATGCGGTGTG | + |
Preference number: 1 (lower is better) Translates to: RRTNRLRPGPTSARR*SLVSRASHWERCGV Trigger: CACACCGCATCTCTCCCAATGGCTAGCTCTACTCACCAGCGATCATCTCCTCGCTGAGGTAGGACCTGGCCTCAGCCTGTTGGTCCGTCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR CCA 90 bp | TTTGGCACTGGGGATGGGCACCAACGGGTACCTGGGAGGTACTGCTaGTTTGGAGTGGTTCTGGAGGACCCAGGGGCTCTTCCTAATACA | + |
Preference number: 1 (lower is better) Translates to: FGTGDGHQRVPGRYC*FGVVLEDPGALPNT Trigger: TGTATTAGGAAGAGCCCCTGGGTCCTCCAGAACCACTCCAAACCAGCAGTACCTCCCAGGTACCCGTTGGTGCCCATCCCCAGTGCCAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR GCA 90 bp | GACCGAGTGGGAAGTCTTGCCTCTGAGAACTGTCTGAGGCAAAGCTaGCCATCTCTTCTTGTGGTCTCAGCGTCCAAGCGCTTGGCAGAT | + |
Preference number: 1 (lower is better) Translates to: DRVGSLASENCLRQS*PSLLVVSASKRLAD Trigger: ATCTGCCAAGCGCTTGGACGCTGAGACCACAAGAAGAGATGGGCAGCTTTGCCTCAGACAGTTCTCAGAGGCAAGACTTCCCACTCGGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR TCA 90 bp | TTTACGCCGATGACCGAGTGGGAAGTCTTGCCTCTGAGAACTGTCTaGGGCAAAGCTGCCCATCTCTTCTTGTGGTCTCAGCGTCCAAGC | + |
Preference number: 1 (lower is better) Translates to: FTPMTEWEVLPLRTV*GKAAHLFLWSQRPS Trigger: GCTTGGACGCTGAGACCACAAGAAGAGATGGGCAGCTTTGCCTCAGACAGTTCTCAGAGGCAAGACTTCCCACTCGGTCATCGGCGTAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR TCA 90 bp | AGCGCTTGGCAGATGTTCTGTGACTTTTGCATTCCGTTATTTAGTTaGGGACAAATATTCATTGACCAACTGGTCAAGTCCCAGGCAGCA | + |
Preference number: 1 (lower is better) Translates to: SAWQMFCDFCIPLFS*GQIFIDQLVKSQAA Trigger: TGCTGCCTGGGACTTGACCAGTTGGTCAATGAATATTTGTCCTCAACTAAATAACGGAATGCAAAAGTCACAGAACATCTGCCAAGCGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR-3UTR TCA 90 bp | TCGAGGAGGTGGACGAGGATGGTGAGTTGGGCTCCTCCAGGGCAGGGGACCGGGCCGGGATCCTGGACCTaGGAGCAGATGGAGCCCGTG | + |
Preference number: 2 (lower is better) Translates to: SRRWTRMVSWAPPGQGTGPGSWT*EQMEPV Trigger: CACGGGCTCCATCTGCTCTCAGGTCCAGGATCCCGG...CCCGGTCCCCTGCCCTGGAGGAGCCCAACTCACCATCCTCGTCCACCTCCTCGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR-3UTR GCA 90 bp | TCGAGGAGGTGGACGAGGATGGTGAGTTGGGCTCCTCCAGGGCAGGGGACCGGGGTGAGGGCCAGCTGGTaGTCTTGGCTTTGTGGGTGG | + |
Preference number: 2 (lower is better) Translates to: SRRWTRMVSWAPPGQGTGVRASW*SWLCGW Trigger: CCACCCACAAAGCCAAGAGCACCAGCTGGCCCTCAC...CCCGGTCCCCTGCCCTGGAGGAGCCCAACTCACCATCCTCGTCCACCTCCTCGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR-3UTR CCA 90 bp | ATGCGGTGTGAGGCTGACAATCCAACTGGCCTCACCCATCGCTCCTCCTGTCTCAGACTGCAGGTCCCCTaGGCGTGGGCAGCTCCACCT | + |
Preference number: 2 (lower is better) Translates to: MRCEADNPTGLTHRSSCLRLQVP*AWAAPP Trigger: AGGTGGAGCTGCCCACGCCCAGGGGACCTGCAGTCT...GAGACAGGAGGAGCGATGGGTGAGGCCAGTTGGATTGTCAGCCTCACACCGCAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR-3UTR TCA 90 bp | CCTGTGTCCCTTTGGCACTGGGGATGGGCACCAACGGGTACCTGGGAGGTACTGCCTGAACGGTACGCCTaGCCTAGTCCCTCTTCTTCG | + |
Preference number: 2 (lower is better) Translates to: PVSLWHWGWAPTGTWEVLPERYA*PSPSSS Trigger: CGAAGAAGAGGGACTAGGTCAGGCGTACCGTTCAGG...CAGTACCTCCCAGGTACCCGTTGGTGCCCATCCCCAGTGCCAAAGGGACACAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR CAA 90 bp | CGAAGGGGAAGAGCGAAGAGGAACTGGCTGAGTGCTTCCGCATCTTaGACAGGTGCGTGGGGCTTCCGGGATCCTGGACCTGAGAGCAGA | + |
Preference number: 2 (lower is better) Translates to: RRGRAKRNWLSASAS*TGAWGFRDPGPESR Trigger: TCTGCTCTCAGGTCCAGGATCCCGGAAGCCCCACGCACCTGTCAAAGATGCGGAAGCACTCAGCCAGTTCCTCTTCGCTCTTCCCCTTCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR-3UTR TCA 90 bp | GCTCTGATTCTCTCTGCTTTCTACAGACGGACCAACAGGCTGAGGCCAGGTCCTCCCGTGGGCCTGAAGTaGAGAAGCAGGCTGGCCAGG | + |
Preference number: 2 (lower is better) Translates to: ALILSAFYRRTNRLRPGPPVGLK*RSRLAR Trigger: CCTGGCCAGCCTGCTTCTTCACTTCAGGCCCACGGG...AGGACCTGGCCTCAGCCTGTTGGTCCGTCTGTAGAAAGCAGAGAGAATCAGAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR-3UTR TCA 90 bp | CCTGTGTCCCTTTGGCACTGGGGATGGGCACCAACGGGTACCTGGGAGGTACTGACCTCAGCGAGGAGATaGTCGCTGGTGAGTAGAGCT | + |
Preference number: 2 (lower is better) Translates to: PVSLWHWGWAPTGTWEVLTSARR*SLVSRA Trigger: AGCTCTACTCACCAGCGATCATCTCCTCGCTGAGGT...CAGTACCTCCCAGGTACCCGTTGGTGCCCATCCCCAGTGCCAAAGGGACACAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR CAA 90 bp | GCACTGGGGATGGGCACCAACGGGTACCTGGGAGGTACTGCTGGTTaGGAGTGGTTCTGGAGGACCCAGGGGCTCTTCCTAATACAAGAG | + |
Preference number: 2 (lower is better) Translates to: ALGMGTNGYLGGTAG*EWFWRTQGLFLIQE Trigger: CTCTTGTATTAGGAAGAGCCCCTGGGTCCTCCAGAACCACTCCAAACCAGCAGTACCTCCCAGGTACCCGTTGGTGCCCATCCCCAGTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR-3UTR CCA 90 bp | GCTCTGATTCTCTCTGCTTTCTACAGACGGACCAACAGGCTGAGGCCAGGTCCTCAGGTCCCCTGGGCGTaGGCAGCTCCACCTTTGCTT | + |
Preference number: 2 (lower is better) Translates to: ALILSAFYRRTNRLRPGPQVPWA*AAPPLL Trigger: AAGCAAAGGTGGAGCTGCCCACGCCCAGGGGACCTG...AGGACCTGGCCTCAGCCTGTTGGTCCGTCTGTAGAAAGCAGAGAGAATCAGAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR-3UTR TCA 90 bp | GAGAACTGTCTGAGGCAAAGCTGCCCATCTCTTCTTGTGGTCTCAGCGTCCAAGGACGGACCAACAGGCTaGGGCCAGGTCCTACCTCAG | + |
Preference number: 2 (lower is better) Translates to: ENCLRQSCPSLLVVSASKDGPTG*GQVLPQ Trigger: CTGAGGTAGGACCTGGCCTCAGCCTGTTGGTCCGTC...CTTGGACGCTGAGACCACAAGAAGAGATGGGCAGCTTTGCCTCAGACAGTTCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR CAA 90 bp | AGAGTTTCTGAAGATGATGGAGGGCGTTCAGTAAGGAGACGGTCTTaGTTCGTGTCCATCCAGACTGCAGGTCCCCTGGGCGTGGGCAGC | + |
Preference number: 2 (lower is better) Translates to: RVSEDDGGRSVRRRS*FVSIQTAGPLGVGS Trigger: GCTGCCCACGCCCAGGGGACCTGCAGTCTGGATGGACACGAACAAAGACCGTCTCCTTACTGAACGCCCTCCATCATCTTCAGAAACTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR-3UTR TCA 90 bp | GAGAACTGTCTGAGGCAAAGCTGCCCATCTCTTCTTGTGGTCTCAGCGTCCAAGGTGCTTCCGCATCTTTaGCAGGTGCGTGGGGCTTCC | + |
Preference number: 2 (lower is better) Translates to: ENCLRQSCPSLLVVSASKVLPHL*QVRGAS Trigger: GGAAGCCCCACGCACCTGTCAAAGATGCGGAAGCAC...CTTGGACGCTGAGACCACAAGAAGAGATGGGCAGCTTTGCCTCAGACAGTTCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR-3UTR GCA 90 bp | GCTCTGATTCTCTCTGCTTTCTACAGACGGACCAACAGGCTGAGGCCAGGTCCTGCCAACCCCGATCCTTaGAGGCAGCGGTACTATCGA | + |
Preference number: 2 (lower is better) Translates to: ALILSAFYRRTNRLRPGPANPDP*RQRYYR Trigger: TCGATAGTACCGCTGCCTGCAAGGATCGGGGTTGGC...AGGACCTGGCCTCAGCCTGTTGGTCCGTCTGTAGAAAGCAGAGAGAATCAGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR-3UTR TCA 90 bp | ATCTCTTCTTGTGGTCTCAGCGTCCAAGCGCTTGGCAGATGTTCTGTGACTTTTGGTGGACGAGGATGGTaGGTTGGGCTCCTCCAGGGC | + |
Preference number: 2 (lower is better) Translates to: ISSCGLSVQALGRCSVTFGGRGW*VGLLQG Trigger: GCCCTGGAGGAGCCCAACTCACCATCCTCGTCCACC...AAAAGTCACAGAACATCTGCCAAGCGCTTGGACGCTGAGACCACAAGAAGAGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR-3UTR GCA 90 bp | ATCAAGAGAGGTGTTTACGCCGATGACCGAGTGGGAAGTCTTGCCTCTGAGAACAGCAGGCCCCACATCTaGCAACCCCGATCCTTGCAG | + |
Preference number: 2 (lower is better) Translates to: IKRGVYADDRVGSLASENSRPHI*QPRSLQ Trigger: CTGCAAGGATCGGGGTTGGCAGATGTGGGGCCTGCT...GTTCTCAGAGGCAAGACTTCCCACTCGGTCATCGGCGTAAACACCTCTCTTGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR-3UTR CCA 90 bp | GAGAACTGTCTGAGGCAAAGCTGCCCATCTCTTCTTGTGGTCTCAGCGTCCAAGATGGTGAGGGCCAGCTaGTGCTCTTGGCTTTGTGGG | + |
Preference number: 2 (lower is better) Translates to: ENCLRQSCPSLLVVSASKMVRAS*CSWLCG Trigger: CCCACAAAGCCAAGAGCACCAGCTGGCCCTCACCAT...CTTGGACGCTGAGACCACAAGAAGAGATGGGCAGCTTTGCCTCAGACAGTTCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR-3UTR CCA 90 bp | ATGCGGTGTGAGGCTGACAATCCAACTGGCCTCACCCATCGCTCCTCCTGTCTCCCACCAAAGAGGAATTaGATGCCATCATCGAGGAGG | + |
Preference number: 2 (lower is better) Translates to: MRCEADNPTGLTHRSSCLPPKRN*MPSSRR Trigger: CCTCCTCGATGATGGCATCCAATTCCTCTTTGGTGG...GAGACAGGAGGAGCGATGGGTGAGGCCAGTTGGATTGTCAGCCTCACACCGCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR-3UTR GCA 90 bp | CACCAACGGGTACCTGGGAGGTACTGCTGGTTTGGAGTGGTTCTGGAGGACCCACAAAGAGGAATTGGATaGCATCATCGAGGAGGTGGA | + |
Preference number: 2 (lower is better) Translates to: HQRVPGRYCWFGVVLEDPQRGIG*HHRGGG Trigger: TCCACCTCCTCGATGATGGCATCCAATTCCTCTTTG...TGGGTCCTCCAGAACCACTCCAAACCAGCAGTACCTCCCAGGTACCCGTTGGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR-3UTR GCA 90 bp | GCTCTGATTCTCTCTGCTTTCTACAGACGGACCAACAGGCTGAGGCCAGGTCCTAGCCATTGGGAGAGATaGGGTGTGAGGCTGACAATC | + |
Preference number: 2 (lower is better) Translates to: ALILSAFYRRTNRLRPGPSHWER*GVRLTI Trigger: GATTGTCAGCCTCACACCGCATCTCTCCCAATGGCT...AGGACCTGGCCTCAGCCTGTTGGTCCGTCTGTAGAAAGCAGAGAGAATCAGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR-3UTR CCA 90 bp | GCTCTGATTCTCTCTGCTTTCTACAGACGGACCAACAGGCTGAGGCCAGGTCCTAGAGCGAAGAGGAACTaGCTGAGTGCTTCCGCATCT | + |
Preference number: 2 (lower is better) Translates to: ALILSAFYRRTNRLRPGPRAKRN*LSASAS Trigger: AGATGCGGAAGCACTCAGCCAGTTCCTCTTCGCTCT...AGGACCTGGCCTCAGCCTGTTGGTCCGTCTGTAGAAAGCAGAGAGAATCAGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR-3UTR CCA 90 bp | ATCTCTTCTTGTGGTCTCAGCGTCCAAGCGCTTGGCAGATGTTCTGTGACTTTTGTGCTCTTGGCTTTGTaGGTGGGGCTGGGAATAGAC | + |
Preference number: 2 (lower is better) Translates to: ISSCGLSVQALGRCSVTFVLLAL*VGLGID Trigger: GTCTATTCCCAGCCCCACCCACAAAGCCAAGAGCAC...AAAAGTCACAGAACATCTGCCAAGCGCTTGGACGCTGAGACCACAAGAAGAGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR-3UTR GCA 90 bp | TCTCTCAATCCTGATTTCTTATTATCTCTACAAAGTCATAGGAAGAGTGACTTGCGCATCTTTGACAGGTaGGTGGGGCTTCCGGGATCC | + |
Preference number: 2 (lower is better) Translates to: SLNPDFLLSLQSHRKSDLRIFDR*VGLPGS Trigger: GGATCCCGGAAGCCCCACGCACCTGTCAAAGATGCG...CAAGTCACTCTTCCTATGACTTTGTAGAGATAATAAGAAATCAGGATTGAGAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR-3UTR CCA 90 bp | TCTCTCAATCCTGATTTCTTATTATCTCTACAAAGTCATAGGAAGAGTGACTTGCCATCATCGAGGAGGTaGACGAGGATGGTGAGTTGG | + |
Preference number: 2 (lower is better) Translates to: SLNPDFLLSLQSHRKSDLPSSRR*TRMVSW Trigger: CCAACTCACCATCCTCGTCCACCTCCTCGATGATGG...CAAGTCACTCTTCCTATGACTTTGTAGAGATAATAAGAAATCAGGATTGAGAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR-3UTR TCA 90 bp | TCTGTGACTTTTGCATTCCGTTATTTAGTTGAGGACAAATATTCATTGACCAACCGGTACTATCGACTTTaGAGAGTTCTTGGTCATGAT | + |
Preference number: 2 (lower is better) Translates to: SVTFAFRYLVEDKYSLTNRYYRL*RVLGHD Trigger: ATCATGACCAAGAACTCTTCAAAGTCGATAGTACCG...GTTGGTCAATGAATATTTGTCCTCAACTAAATAACGGAATGCAAAAGTCACAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR GCA 72 bp | GGCACAGGGCACCTTGGGCTAAGCAGGCCCCACATCTaGCAACCCCGATCCTTGCAGGCAGCGGTACTATCG | + |
Preference number: 3 (lower is better) Translates to: GTGHLGLSRPHI*QPRSLQAAVLS Trigger: CGATAGTACCGCTGCCTGCAAGGATCGGGGTTGGCAGATGTGGGGCCTGCTTAGCCCAAGGTGCCCTGTGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR-3UTR CAA 90 bp | TTGACAGGTGCGTGGGGCTTCCGGGATCCTGGACCTGAGAGCAGATGGAGCCCGCTGGCCAGGGTGAGGTaGACCCTGTGTCCTTCTCTG | + |
Preference number: 3 (lower is better) Translates to: LTGAWGFRDPGPESRWSPLARVR*TLCPSL Trigger: CAGAGAAGGACACAGGGTCAACCTCACCCTGGCCAG...CGGGCTCCATCTGCTCTCAGGTCCAGGATCCCGGAAGCCCCACGCACCTGTCAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR-3UTR CAA 90 bp | CACCAACGGGTACCTGGGAGGTACTGCTGGTTTGGAGTGGTTCTGGAGGACCCAGACGAGGATGGTGAGTaGGGCTCCTCCAGGGCAGGG | + |
Preference number: 3 (lower is better) Translates to: HQRVPGRYCWFGVVLEDPDEDGE*GSSRAG Trigger: CCCTGCCCTGGAGGAGCCCAACTCACCATCCTCGTC...TGGGTCCTCCAGAACCACTCCAAACCAGCAGTACCTCCCAGGTACCCGTTGGTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR CCA 72 bp | GGGGATGGGCACCAACGGGTACCTGGGAGGTACTGCTaGTTTGGAGTGGTTCTGGAGGACCCAGGGGCTCTT | + |
Preference number: 3 (lower is better) Translates to: GDGHQRVPGRYC*FGVVLEDPGAL Trigger: AAGAGCCCCTGGGTCCTCCAGAACCACTCCAAACCAGCAGTACCTCCCAGGTACCCGTTGGTGCCCATCCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR GCA 72 bp | AGTAAGGAGACGGTCTTTGTTCGTGTCCATCCAGACTaGAGGTCCCCTGGGCGTGGGCAGCTCCACCTTTGC | + |
Preference number: 3 (lower is better) Translates to: SKETVFVRVHPD*RSPGRGQLHLC Trigger: GCAAAGGTGGAGCTGCCCACGCCCAGGGGACCTGCAGTCTGGATGGACACGAACAAAGACCGTCTCCTTACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR CCA 72 bp | TCCCTTTGGCACTGGGGATGGGCACCAACGGGTACCTaGGAGGTACTGCTGGTTTGGAGTGGTTCTGGAGGA | + |
Preference number: 3 (lower is better) Translates to: SLWHWGWAPTGT*EVLLVWSGSGG Trigger: TCCTCCAGAACCACTCCAAACCAGCAGTACCTCCCAGGTACCCGTTGGTGCCCATCCCCAGTGCCAAAGGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR-3UTR CAA 90 bp | CCTGTGTCCCTTTGGCACTGGGGATGGGCACCAACGGGTACCTGGGAGGTACTGATCAGCGTTAAAGAGTaGGGCACCGTGATGAGGATG | + |
Preference number: 3 (lower is better) Translates to: PVSLWHWGWAPTGTWEVLISVKE*GTVMRM Trigger: CATCCTCATCACGGTGCCCAACTCTTTAACGCTGAT...CAGTACCTCCCAGGTACCCGTTGGTGCCCATCCCCAGTGCCAAAGGGACACAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR CCA 72 bp | CCACCAAAGAGGAATTGGATGCCATCATCGAGGAGGTaGACGAGGATGGTGAGTTGGGCTCCTCCAGGGCAG | + |
Preference number: 3 (lower is better) Translates to: PPKRNWMPSSRR*TRMVSWAPPGQ Trigger: CTGCCCTGGAGGAGCCCAACTCACCATCCTCGTCCACCTCCTCGATGATGGCATCCAATTCCTCTTTGGTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR CCA 72 bp | GGGTACCTGGGAGGTACTGCTGGTTTGGAGTGGTTCTaGAGGACCCAGGGGCTCTTCCTAATACAAGAGGGG | + |
Preference number: 3 (lower is better) Translates to: GYLGGTAGLEWF*RTQGLFLIQEG Trigger: CCCCTCTTGTATTAGGAAGAGCCCCTGGGTCCTCCAGAACCACTCCAAACCAGCAGTACCTCCCAGGTACCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR TCA 72 bp | AACAGGCTGAGGCCAGGTCCTACCTCAGCGAGGAGATaGTCGCTGGTGAGTAGAGCTAGCCATTGGGAGAGA | + |
Preference number: 3 (lower is better) Translates to: NRLRPGPTSARR*SLVSRASHWER Trigger: TCTCTCCCAATGGCTAGCTCTACTCACCAGCGATCATCTCCTCGCTGAGGTAGGACCTGGCCTCAGCCTGTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR TCA 72 bp | GCTGAAGCTGGGGTGAGAGTCTGCCCTTCTACGCTCTaGTTCTCTCTGCTTTCTACAGACGGACCAACAGGC | + |
Preference number: 3 (lower is better) Translates to: AEAGVRVCPSTL*FSLLSTDGPTG Trigger: GCCTGTTGGTCCGTCTGTAGAAAGCAGAGAGAATCAGAGCGTAGAAGGGCAGACTCTCACCCCAGCTTCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR TCA 72 bp | CTGTCCTGGAGCTTACTTTGTAGACCAGGTTGGCCTTaGACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGT | + |
Preference number: 3 (lower is better) Translates to: LSWSLLCRPGWP*TQKSACLCLPS Trigger: ACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAACCTGGTCTACAAAGTAAGCTCCAGGACAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088248.13 |
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3UTR GCA 72 bp | GGAAGTCTTGCCTCTGAGAACTGTCTGAGGCAAAGCTaGCCATCTCTTCTTGTGGTCTCAGCGTCCAAGCGC | + |
Preference number: 3 (lower is better) Translates to: GSLASENCLRQS*PSLLVVSASKR Trigger: GCGCTTGGACGCTGAGACCACAAGAAGAGATGGGCAGCTTTGCCTCAGACAGTTCTCAGAGGCAAGACTTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR CCA 72 bp | ACCAACGGGTACCTGGGAGGTACTGCTGGTTTGGAGTaGTTCTGGAGGACCCAGGGGCTCTTCCTAATACAA | + |
Preference number: 3 (lower is better) Translates to: TNGYLGGTAGLE*FWRTQGLFLIQ Trigger: TTGTATTAGGAAGAGCCCCTGGGTCCTCCAGAACCACTCCAAACCAGCAGTACCTCCCAGGTACCCGTTGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR-3UTR CAA 90 bp | AAGAGAGGTGTTTACGCCGATGACCGAGTGGGAAGTCTTGCCTCTGAGAACTGTCTGGTGCTCTTGGCTTaGTGGGTGGGGCTGGGAATA | + |
Preference number: 3 (lower is better) Translates to: KRGVYADDRVGSLASENCLVLLA*WVGLGI Trigger: TATTCCCAGCCCCACCCACAAAGCCAAGAGCACCAG...ACAGTTCTCAGAGGCAAGACTTCCCACTCGGTCATCGGCGTAAACACCTCTCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR-3UTR CAA 90 bp | GCTCTGATTCTCTCTGCTTTCTACAGACGGACCAACAGGCTGAGGCCAGGTCCTCCCACCAAAGAGGAATaGGATGCCATCATCGAGGAG | + |
Preference number: 3 (lower is better) Translates to: ALILSAFYRRTNRLRPGPPTKEE*DAIIEE Trigger: CTCCTCGATGATGGCATCCAATTCCTCTTTGGTGGG...AGGACCTGGCCTCAGCCTGTTGGTCCGTCTGTAGAAAGCAGAGAGAATCAGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR CCA 72 bp | GCCCATCTCTTCTTGTGGTCTCAGCGTCCAAGCGCTTaGCAGATGTTCTGTGACTTTTGCATTCCGTTATTT | + |
Preference number: 3 (lower is better) Translates to: AHLFLWSQRPSA*QMFCDFCIPLF Trigger: AAATAACGGAATGCAAAAGTCACAGAACATCTGCCAAGCGCTTGGACGCTGAGACCACAAGAAGAGATGGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR TCA 72 bp | CAGATGTTCTGTGACTTTTGCATTCCGTTATTTAGTTaGGGACAAATATTCATTGACCAACTGGTCAAGTCC | + |
Preference number: 3 (lower is better) Translates to: QMFCDFCIPLFS*GQIFIDQLVKS Trigger: GGACTTGACCAGTTGGTCAATGAATATTTGTCCTCAACTAAATAACGGAATGCAAAAGTCACAGAACATCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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CDS-3UTR GCA 90 bp | TTTGTTCGTGTCCATCCAGACTGCAGGTCCCCTGGGCGTGGGCAGCTCCACCTTCCTGCTGTAGCCGCTTaGCCACAGGGCCTCGGGCGG | + |
Preference number: 4 (lower is better) Translates to: FVRVHPDCRSPGRGQLHLPAVAA*PQGLGR Trigger: CCGCCCGAGGCCCTGTGGGCAAGCGGCTACAGCAGG...AAGGTGGAGCTGCCCACGCCCAGGGGACCTGCAGTCTGGATGGACACGAACAAA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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CDS-3UTR TCA 90 bp | TCGAGGAGGTGGACGAGGATGGTGAGTTGGGCTCCTCCAGGGCAGGGGACCGGGCTTGAACAGGTTGTCTaGCTCAGGGAAGGCGGAGAT | + |
Preference number: 4 (lower is better) Translates to: SRRWTRMVSWAPPGQGTGLEQVV*LREGGD Trigger: ATCTCCGCCTTCCCTGAGTCAGACAACCTGTTCAAG...CCCGGTCCCCTGCCCTGGAGGAGCCCAACTCACCATCCTCGTCCACCTCCTCGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR CAA 72 bp | ATGGGCACCAACGGGTACCTGGGAGGTACTGCTGGTTaGGAGTGGTTCTGGAGGACCCAGGGGCTCTTCCTA | + |
Preference number: 4 (lower is better) Translates to: MGTNGYLGGTAG*EWFWRTQGLFL Trigger: TAGGAAGAGCCCCTGGGTCCTCCAGAACCACTCCAAACCAGCAGTACCTCCCAGGTACCCGTTGGTGCCCAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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CDS-3UTR GCA 90 bp | GGTATAACCTGTGTCCCTTTGGCACTGGGGATGGGCACCAACGGGTACCTGGGAGGTCTTCATATACGGTaGCGGCTGCTCCGTGGATGG | + |
Preference number: 4 (lower is better) Translates to: GITCVPLALGMGTNGYLGGLHIR*RLLRGW Trigger: CCATCCACGGAGCAGCCGGCACCGTATATGAAGACC...TCCCAGGTACCCGTTGGTGCCCATCCCCAGTGCCAAAGGGACACAGGTTATACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR CAA 72 bp | GAAGATGATGGAGGGCGTTCAGTAAGGAGACGGTCTTaGTTCGTGTCCATCCAGACTGCAGGTCCCCTGGGC | + |
Preference number: 4 (lower is better) Translates to: EDDGGRSVRRRS*FVSIQTAGPLG Trigger: GCCCAGGGGACCTGCAGTCTGGATGGACACGAACAAAGACCGTCTCCTTACTGAACGCCCTCCATCATCTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR CAA 72 bp | GGGCTAAGCAGGCCCCACATCTGCCAACCCCGATCCTaGCAGGCAGCGGTACTATCGACTTTGAAGAGTTCT | + |
Preference number: 4 (lower is better) Translates to: GLSRPHICQPRS*QAAVLSTLKSS Trigger: AGAACTCTTCAAAGTCGATAGTACCGCTGCCTGCAAGGATCGGGGTTGGCAGATGTGGGGCCTGCTTAGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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CDS-3UTR TCA 90 bp | GAGAACTGTCTGAGGCAAAGCTGCCCATCTCTTCTTGTGGTCTCAGCGTCCAAGCTCCTTTGGGCTCTGTaGCTGTGGGGTTTTTCCAGA | + |
Preference number: 4 (lower is better) Translates to: ENCLRQSCPSLLVVSASKLLWAL*LWGFSR Trigger: TCTGGAAAAACCCCACAGTCACAGAGCCCAAAGGAG...CTTGGACGCTGAGACCACAAGAAGAGATGGGCAGCTTTGCCTCAGACAGTTCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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CDS-3UTR CCA 90 bp | TCTGTGACTTTTGCATTCCGTTATTTAGTTGAGGACAAATATTCATTGACCAACGTGCCGGCTGCTCCGTaGATGGTCCCCACCCACTTG | + |
Preference number: 4 (lower is better) Translates to: SVTFAFRYLVEDKYSLTNVPAAP*MVPTHL Trigger: CAAGTGGGTGGGGACCATCCACGGAGCAGCCGGCAC...GTTGGTCAATGAATATTTGTCCTCAACTAAATAACGGAATGCAAAAGTCACAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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3UTR CAA 72 bp | TTTTTATTTTCACACCAGGGCAAGGCTCCGTCACATTaGACATCAAGAGAGGTGTTTACGCCGATGACCGAG | + |
Preference number: 4 (lower is better) Translates to: FLFSHQGKAPSH*TSREVFTPMTE Trigger: CTCGGTCATCGGCGTAAACACCTCTCTTGATGTCAAATGTGACGGAGCCTTGCCCTGGTGTGAAAATAAAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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CDS-3UTR GCA 90 bp | TCTCTCAATCCTGATTTCTTATTATCTCTACAAAGTCATAGGAAGAGTGACTTGTCACACGGGAAAGGCTaGTCCTTTGGGCTCTGTGAC | + |
Preference number: 4 (lower is better) Translates to: SLNPDFLLSLQSHRKSDLSHGKG*SFGLCD Trigger: GTCACAGAGCCCAAAGGAGCAGCCTTTCCCGTGTGA...CAAGTCACTCTTCCTATGACTTTGTAGAGATAATAAGAAATCAGGATTGAGAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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CDS-3UTR TCA 90 bp | TCTCTCAATCCTGATTTCTTATTATCTCTACAAAGTCATAGGAAGAGTGACTTGTGTCACCAGATGTCATaGGGATCATCAGTTCCTGCT | + |
Preference number: 4 (lower is better) Translates to: SLNPDFLLSLQSHRKSDLCHQMS*GSSVPA Trigger: AGCAGGAACTGATGATCCTCATGACATCTGGTGACA...CAAGTCACTCTTCCTATGACTTTGTAGAGATAATAAGAAATCAGGATTGAGAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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CDS-3UTR CAA 90 bp | ATCTCTTCTTGTGGTCTCAGCGTCCAAGCGCTTGGCAGATGTTCTGTGACTTTTGGAAAGGCTGCTCCTTaGGGCTCTGTGACTGTGGGG | + |
Preference number: 5 (lower is better) Translates to: ISSCGLSVQALGRCSVTFGKAAP*GSVTVG Trigger: CCCCACAGTCACAGAGCCCAAAGGAGCAGCCTTTCC...AAAAGTCACAGAACATCTGCCAAGCGCTTGGACGCTGAGACCACAAGAAGAGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |
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CDS-3UTR CAA 90 bp | ATCTCTTCTTGTGGTCTCAGCGTCCAAGCGCTTGGCAGATGTTCTGTGACTTTTAAGGCGGAGATTCCTTaGTCACCAGATGTCATGAGG | + |
Preference number: 5 (lower is better) Translates to: ISSCGLSVQALGRCSVTFKAEIP*SPDVMR Trigger: CCTCATGACATCTGGTGACAAAGGAATCTCCGCCTT...AAAAGTCACAGAACATCTGCCAAGCGCTTGGACGCTGAGACCACAAGAAGAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001439.7 |