RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for UBE2C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000001403

Ensembl transcript IDs: ENSMUST00000001439.7, ENSMUST00000088248.13

Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCGAAGAGGAACTGGCTGAGTGCTTCCGCATCTTTGACAGGTGCGTaGGGCTTCCGGGATCCTGGACCTGAGAGCAGATGGAGCCCGTGG +
Preference number: 1 (lower is better)
Translates to: AKRNWLSASASLTGA*GFRDPGPESRWSPW
Trigger: CCACGGGCTCCATCTGCTCTCAGGTCCAGGATCCCGGAAGCCCCACGCACCTGTCAAAGATGCGGAAGCACTCAGCCAGTTCCTCTTCGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR CCA 90 bp GGCAGACACCCACCAAAGAGGAATTGGATGCCATCATCGAGGAGGTaGACGAGGATGGTGAGTTGGGCTCCTCCAGGGCAGGGGACCGGG +
Preference number: 1 (lower is better)
Translates to: GRHPPKRNWMPSSRR*TRMVSWAPPGQGTG
Trigger: CCCGGTCCCCTGCCCTGGAGGAGCCCAACTCACCATCCTCGTCCACCTCCTCGATGATGGCATCCAATTCCTCTTTGGTGGGTGTCTGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR GCA 90 bp AGGGCGTTCAGTAAGGAGACGGTCTTTGTTCGTGTCCATCCAGACTaGAGGTCCCCTGGGCGTGGGCAGCTCCACCTTTGCTTTCCCTGC +
Preference number: 1 (lower is better)
Translates to: RAFSKETVFVRVHPD*RSPGRGQLHLCFPC
Trigger: GCAGGGAAAGCAAAGGTGGAGCTGCCCACGCCCAGGGGACCTGCAGTCTGGATGGACACGAACAAAGACCGTCTCCTTACTGAACGCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR GCA 90 bp GAGGAGAGAGGCACAGGGCACCTTGGGCTAAGCAGGCCCCACATCTaGCAACCCCGATCCTTGCAGGCAGCGGTACTATCGACTTTGAAG +
Preference number: 1 (lower is better)
Translates to: EERGTGHLGLSRPHI*QPRSLQAAVLSTLK
Trigger: CTTCAAAGTCGATAGTACCGCTGCCTGCAAGGATCGGGGTTGGCAGATGTGGGGCCTGCTTAGCCCAAGGTGCCCTGTGCCTCTCTCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR GCA 90 bp CCCTTTGGCACTGGGGATGGGCACCAACGGGTACCTGGGAGGTACTaGTGGTTTGGAGTGGTTCTGGAGGACCCAGGGGCTCTTCCTAAT +
Preference number: 1 (lower is better)
Translates to: PFGTGDGHQRVPGRY*WFGVVLEDPGALPN
Trigger: ATTAGGAAGAGCCCCTGGGTCCTCCAGAACCACTCCAAACCAGCAGTACCTCCCAGGTACCCGTTGGTGCCCATCCCCAGTGCCAAAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR CCA 90 bp GGCACCAACGGGTACCTGGGAGGTACTGCTGGTTTGGAGTGGTTCTaGAGGACCCAGGGGCTCTTCCTAATACAAGAGGGGGCTAGGGAG +
Preference number: 1 (lower is better)
Translates to: GTNGYLGGTAGLEWF*RTQGLFLIQEGARE
Trigger: CTCCCTAGCCCCCTCTTGTATTAGGAAGAGCCCCTGGGTCCTCCAGAACCACTCCAAACCAGCAGTACCTCCCAGGTACCCGTTGGTGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR CCA 90 bp GGGATGGGCACCAACGGGTACCTGGGAGGTACTGCTGGTTTGGAGTaGTTCTGGAGGACCCAGGGGCTCTTCCTAATACAAGAGGGGGCT +
Preference number: 1 (lower is better)
Translates to: GMGTNGYLGGTAGLE*FWRTQGLFLIQEGA
Trigger: AGCCCCCTCTTGTATTAGGAAGAGCCCCTGGGTCCTCCAGAACCACTCCAAACCAGCAGTACCTCCCAGGTACCCGTTGGTGCCCATCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR TCA 90 bp AGACGGACCAACAGGCTGAGGCCAGGTCCTACCTCAGCGAGGAGATaGTCGCTGGTGAGTAGAGCTAGCCATTGGGAGAGATGCGGTGTG +
Preference number: 1 (lower is better)
Translates to: RRTNRLRPGPTSARR*SLVSRASHWERCGV
Trigger: CACACCGCATCTCTCCCAATGGCTAGCTCTACTCACCAGCGATCATCTCCTCGCTGAGGTAGGACCTGGCCTCAGCCTGTTGGTCCGTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR CCA 90 bp TTTGGCACTGGGGATGGGCACCAACGGGTACCTGGGAGGTACTGCTaGTTTGGAGTGGTTCTGGAGGACCCAGGGGCTCTTCCTAATACA +
Preference number: 1 (lower is better)
Translates to: FGTGDGHQRVPGRYC*FGVVLEDPGALPNT
Trigger: TGTATTAGGAAGAGCCCCTGGGTCCTCCAGAACCACTCCAAACCAGCAGTACCTCCCAGGTACCCGTTGGTGCCCATCCCCAGTGCCAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR GCA 90 bp GACCGAGTGGGAAGTCTTGCCTCTGAGAACTGTCTGAGGCAAAGCTaGCCATCTCTTCTTGTGGTCTCAGCGTCCAAGCGCTTGGCAGAT +
Preference number: 1 (lower is better)
Translates to: DRVGSLASENCLRQS*PSLLVVSASKRLAD
Trigger: ATCTGCCAAGCGCTTGGACGCTGAGACCACAAGAAGAGATGGGCAGCTTTGCCTCAGACAGTTCTCAGAGGCAAGACTTCCCACTCGGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR TCA 90 bp TTTACGCCGATGACCGAGTGGGAAGTCTTGCCTCTGAGAACTGTCTaGGGCAAAGCTGCCCATCTCTTCTTGTGGTCTCAGCGTCCAAGC +
Preference number: 1 (lower is better)
Translates to: FTPMTEWEVLPLRTV*GKAAHLFLWSQRPS
Trigger: GCTTGGACGCTGAGACCACAAGAAGAGATGGGCAGCTTTGCCTCAGACAGTTCTCAGAGGCAAGACTTCCCACTCGGTCATCGGCGTAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR TCA 90 bp AGCGCTTGGCAGATGTTCTGTGACTTTTGCATTCCGTTATTTAGTTaGGGACAAATATTCATTGACCAACTGGTCAAGTCCCAGGCAGCA +
Preference number: 1 (lower is better)
Translates to: SAWQMFCDFCIPLFS*GQIFIDQLVKSQAA
Trigger: TGCTGCCTGGGACTTGACCAGTTGGTCAATGAATATTTGTCCTCAACTAAATAACGGAATGCAAAAGTCACAGAACATCTGCCAAGCGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR-3UTR TCA 90 bp TCGAGGAGGTGGACGAGGATGGTGAGTTGGGCTCCTCCAGGGCAGGGGACCGGGCCGGGATCCTGGACCTaGGAGCAGATGGAGCCCGTG +
Preference number: 2 (lower is better)
Translates to: SRRWTRMVSWAPPGQGTGPGSWT*EQMEPV
Trigger: CACGGGCTCCATCTGCTCTCAGGTCCAGGATCCCGG...CCCGGTCCCCTGCCCTGGAGGAGCCCAACTCACCATCCTCGTCCACCTCCTCGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR-3UTR GCA 90 bp TCGAGGAGGTGGACGAGGATGGTGAGTTGGGCTCCTCCAGGGCAGGGGACCGGGGTGAGGGCCAGCTGGTaGTCTTGGCTTTGTGGGTGG +
Preference number: 2 (lower is better)
Translates to: SRRWTRMVSWAPPGQGTGVRASW*SWLCGW
Trigger: CCACCCACAAAGCCAAGAGCACCAGCTGGCCCTCAC...CCCGGTCCCCTGCCCTGGAGGAGCCCAACTCACCATCCTCGTCCACCTCCTCGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR-3UTR CCA 90 bp ATGCGGTGTGAGGCTGACAATCCAACTGGCCTCACCCATCGCTCCTCCTGTCTCAGACTGCAGGTCCCCTaGGCGTGGGCAGCTCCACCT +
Preference number: 2 (lower is better)
Translates to: MRCEADNPTGLTHRSSCLRLQVP*AWAAPP
Trigger: AGGTGGAGCTGCCCACGCCCAGGGGACCTGCAGTCT...GAGACAGGAGGAGCGATGGGTGAGGCCAGTTGGATTGTCAGCCTCACACCGCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR-3UTR TCA 90 bp CCTGTGTCCCTTTGGCACTGGGGATGGGCACCAACGGGTACCTGGGAGGTACTGCCTGAACGGTACGCCTaGCCTAGTCCCTCTTCTTCG +
Preference number: 2 (lower is better)
Translates to: PVSLWHWGWAPTGTWEVLPERYA*PSPSSS
Trigger: CGAAGAAGAGGGACTAGGTCAGGCGTACCGTTCAGG...CAGTACCTCCCAGGTACCCGTTGGTGCCCATCCCCAGTGCCAAAGGGACACAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR CAA 90 bp CGAAGGGGAAGAGCGAAGAGGAACTGGCTGAGTGCTTCCGCATCTTaGACAGGTGCGTGGGGCTTCCGGGATCCTGGACCTGAGAGCAGA +
Preference number: 2 (lower is better)
Translates to: RRGRAKRNWLSASAS*TGAWGFRDPGPESR
Trigger: TCTGCTCTCAGGTCCAGGATCCCGGAAGCCCCACGCACCTGTCAAAGATGCGGAAGCACTCAGCCAGTTCCTCTTCGCTCTTCCCCTTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR-3UTR TCA 90 bp GCTCTGATTCTCTCTGCTTTCTACAGACGGACCAACAGGCTGAGGCCAGGTCCTCCCGTGGGCCTGAAGTaGAGAAGCAGGCTGGCCAGG +
Preference number: 2 (lower is better)
Translates to: ALILSAFYRRTNRLRPGPPVGLK*RSRLAR
Trigger: CCTGGCCAGCCTGCTTCTTCACTTCAGGCCCACGGG...AGGACCTGGCCTCAGCCTGTTGGTCCGTCTGTAGAAAGCAGAGAGAATCAGAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR-3UTR TCA 90 bp CCTGTGTCCCTTTGGCACTGGGGATGGGCACCAACGGGTACCTGGGAGGTACTGACCTCAGCGAGGAGATaGTCGCTGGTGAGTAGAGCT +
Preference number: 2 (lower is better)
Translates to: PVSLWHWGWAPTGTWEVLTSARR*SLVSRA
Trigger: AGCTCTACTCACCAGCGATCATCTCCTCGCTGAGGT...CAGTACCTCCCAGGTACCCGTTGGTGCCCATCCCCAGTGCCAAAGGGACACAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR CAA 90 bp GCACTGGGGATGGGCACCAACGGGTACCTGGGAGGTACTGCTGGTTaGGAGTGGTTCTGGAGGACCCAGGGGCTCTTCCTAATACAAGAG +
Preference number: 2 (lower is better)
Translates to: ALGMGTNGYLGGTAG*EWFWRTQGLFLIQE
Trigger: CTCTTGTATTAGGAAGAGCCCCTGGGTCCTCCAGAACCACTCCAAACCAGCAGTACCTCCCAGGTACCCGTTGGTGCCCATCCCCAGTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR-3UTR CCA 90 bp GCTCTGATTCTCTCTGCTTTCTACAGACGGACCAACAGGCTGAGGCCAGGTCCTCAGGTCCCCTGGGCGTaGGCAGCTCCACCTTTGCTT +
Preference number: 2 (lower is better)
Translates to: ALILSAFYRRTNRLRPGPQVPWA*AAPPLL
Trigger: AAGCAAAGGTGGAGCTGCCCACGCCCAGGGGACCTG...AGGACCTGGCCTCAGCCTGTTGGTCCGTCTGTAGAAAGCAGAGAGAATCAGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR-3UTR TCA 90 bp GAGAACTGTCTGAGGCAAAGCTGCCCATCTCTTCTTGTGGTCTCAGCGTCCAAGGACGGACCAACAGGCTaGGGCCAGGTCCTACCTCAG +
Preference number: 2 (lower is better)
Translates to: ENCLRQSCPSLLVVSASKDGPTG*GQVLPQ
Trigger: CTGAGGTAGGACCTGGCCTCAGCCTGTTGGTCCGTC...CTTGGACGCTGAGACCACAAGAAGAGATGGGCAGCTTTGCCTCAGACAGTTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR CAA 90 bp AGAGTTTCTGAAGATGATGGAGGGCGTTCAGTAAGGAGACGGTCTTaGTTCGTGTCCATCCAGACTGCAGGTCCCCTGGGCGTGGGCAGC +
Preference number: 2 (lower is better)
Translates to: RVSEDDGGRSVRRRS*FVSIQTAGPLGVGS
Trigger: GCTGCCCACGCCCAGGGGACCTGCAGTCTGGATGGACACGAACAAAGACCGTCTCCTTACTGAACGCCCTCCATCATCTTCAGAAACTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR-3UTR TCA 90 bp GAGAACTGTCTGAGGCAAAGCTGCCCATCTCTTCTTGTGGTCTCAGCGTCCAAGGTGCTTCCGCATCTTTaGCAGGTGCGTGGGGCTTCC +
Preference number: 2 (lower is better)
Translates to: ENCLRQSCPSLLVVSASKVLPHL*QVRGAS
Trigger: GGAAGCCCCACGCACCTGTCAAAGATGCGGAAGCAC...CTTGGACGCTGAGACCACAAGAAGAGATGGGCAGCTTTGCCTCAGACAGTTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR-3UTR GCA 90 bp GCTCTGATTCTCTCTGCTTTCTACAGACGGACCAACAGGCTGAGGCCAGGTCCTGCCAACCCCGATCCTTaGAGGCAGCGGTACTATCGA +
Preference number: 2 (lower is better)
Translates to: ALILSAFYRRTNRLRPGPANPDP*RQRYYR
Trigger: TCGATAGTACCGCTGCCTGCAAGGATCGGGGTTGGC...AGGACCTGGCCTCAGCCTGTTGGTCCGTCTGTAGAAAGCAGAGAGAATCAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR-3UTR TCA 90 bp ATCTCTTCTTGTGGTCTCAGCGTCCAAGCGCTTGGCAGATGTTCTGTGACTTTTGGTGGACGAGGATGGTaGGTTGGGCTCCTCCAGGGC +
Preference number: 2 (lower is better)
Translates to: ISSCGLSVQALGRCSVTFGGRGW*VGLLQG
Trigger: GCCCTGGAGGAGCCCAACTCACCATCCTCGTCCACC...AAAAGTCACAGAACATCTGCCAAGCGCTTGGACGCTGAGACCACAAGAAGAGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR-3UTR GCA 90 bp ATCAAGAGAGGTGTTTACGCCGATGACCGAGTGGGAAGTCTTGCCTCTGAGAACAGCAGGCCCCACATCTaGCAACCCCGATCCTTGCAG +
Preference number: 2 (lower is better)
Translates to: IKRGVYADDRVGSLASENSRPHI*QPRSLQ
Trigger: CTGCAAGGATCGGGGTTGGCAGATGTGGGGCCTGCT...GTTCTCAGAGGCAAGACTTCCCACTCGGTCATCGGCGTAAACACCTCTCTTGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR-3UTR CCA 90 bp GAGAACTGTCTGAGGCAAAGCTGCCCATCTCTTCTTGTGGTCTCAGCGTCCAAGATGGTGAGGGCCAGCTaGTGCTCTTGGCTTTGTGGG +
Preference number: 2 (lower is better)
Translates to: ENCLRQSCPSLLVVSASKMVRAS*CSWLCG
Trigger: CCCACAAAGCCAAGAGCACCAGCTGGCCCTCACCAT...CTTGGACGCTGAGACCACAAGAAGAGATGGGCAGCTTTGCCTCAGACAGTTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR-3UTR CCA 90 bp ATGCGGTGTGAGGCTGACAATCCAACTGGCCTCACCCATCGCTCCTCCTGTCTCCCACCAAAGAGGAATTaGATGCCATCATCGAGGAGG +
Preference number: 2 (lower is better)
Translates to: MRCEADNPTGLTHRSSCLPPKRN*MPSSRR
Trigger: CCTCCTCGATGATGGCATCCAATTCCTCTTTGGTGG...GAGACAGGAGGAGCGATGGGTGAGGCCAGTTGGATTGTCAGCCTCACACCGCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR-3UTR GCA 90 bp CACCAACGGGTACCTGGGAGGTACTGCTGGTTTGGAGTGGTTCTGGAGGACCCACAAAGAGGAATTGGATaGCATCATCGAGGAGGTGGA +
Preference number: 2 (lower is better)
Translates to: HQRVPGRYCWFGVVLEDPQRGIG*HHRGGG
Trigger: TCCACCTCCTCGATGATGGCATCCAATTCCTCTTTG...TGGGTCCTCCAGAACCACTCCAAACCAGCAGTACCTCCCAGGTACCCGTTGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR-3UTR GCA 90 bp GCTCTGATTCTCTCTGCTTTCTACAGACGGACCAACAGGCTGAGGCCAGGTCCTAGCCATTGGGAGAGATaGGGTGTGAGGCTGACAATC +
Preference number: 2 (lower is better)
Translates to: ALILSAFYRRTNRLRPGPSHWER*GVRLTI
Trigger: GATTGTCAGCCTCACACCGCATCTCTCCCAATGGCT...AGGACCTGGCCTCAGCCTGTTGGTCCGTCTGTAGAAAGCAGAGAGAATCAGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR-3UTR CCA 90 bp GCTCTGATTCTCTCTGCTTTCTACAGACGGACCAACAGGCTGAGGCCAGGTCCTAGAGCGAAGAGGAACTaGCTGAGTGCTTCCGCATCT +
Preference number: 2 (lower is better)
Translates to: ALILSAFYRRTNRLRPGPRAKRN*LSASAS
Trigger: AGATGCGGAAGCACTCAGCCAGTTCCTCTTCGCTCT...AGGACCTGGCCTCAGCCTGTTGGTCCGTCTGTAGAAAGCAGAGAGAATCAGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR-3UTR CCA 90 bp ATCTCTTCTTGTGGTCTCAGCGTCCAAGCGCTTGGCAGATGTTCTGTGACTTTTGTGCTCTTGGCTTTGTaGGTGGGGCTGGGAATAGAC +
Preference number: 2 (lower is better)
Translates to: ISSCGLSVQALGRCSVTFVLLAL*VGLGID
Trigger: GTCTATTCCCAGCCCCACCCACAAAGCCAAGAGCAC...AAAAGTCACAGAACATCTGCCAAGCGCTTGGACGCTGAGACCACAAGAAGAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR-3UTR GCA 90 bp TCTCTCAATCCTGATTTCTTATTATCTCTACAAAGTCATAGGAAGAGTGACTTGCGCATCTTTGACAGGTaGGTGGGGCTTCCGGGATCC +
Preference number: 2 (lower is better)
Translates to: SLNPDFLLSLQSHRKSDLRIFDR*VGLPGS
Trigger: GGATCCCGGAAGCCCCACGCACCTGTCAAAGATGCG...CAAGTCACTCTTCCTATGACTTTGTAGAGATAATAAGAAATCAGGATTGAGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR-3UTR CCA 90 bp TCTCTCAATCCTGATTTCTTATTATCTCTACAAAGTCATAGGAAGAGTGACTTGCCATCATCGAGGAGGTaGACGAGGATGGTGAGTTGG +
Preference number: 2 (lower is better)
Translates to: SLNPDFLLSLQSHRKSDLPSSRR*TRMVSW
Trigger: CCAACTCACCATCCTCGTCCACCTCCTCGATGATGG...CAAGTCACTCTTCCTATGACTTTGTAGAGATAATAAGAAATCAGGATTGAGAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR-3UTR TCA 90 bp TCTGTGACTTTTGCATTCCGTTATTTAGTTGAGGACAAATATTCATTGACCAACCGGTACTATCGACTTTaGAGAGTTCTTGGTCATGAT +
Preference number: 2 (lower is better)
Translates to: SVTFAFRYLVEDKYSLTNRYYRL*RVLGHD
Trigger: ATCATGACCAAGAACTCTTCAAAGTCGATAGTACCG...GTTGGTCAATGAATATTTGTCCTCAACTAAATAACGGAATGCAAAAGTCACAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR GCA 72 bp GGCACAGGGCACCTTGGGCTAAGCAGGCCCCACATCTaGCAACCCCGATCCTTGCAGGCAGCGGTACTATCG +
Preference number: 3 (lower is better)
Translates to: GTGHLGLSRPHI*QPRSLQAAVLS
Trigger: CGATAGTACCGCTGCCTGCAAGGATCGGGGTTGGCAGATGTGGGGCCTGCTTAGCCCAAGGTGCCCTGTGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR-3UTR CAA 90 bp TTGACAGGTGCGTGGGGCTTCCGGGATCCTGGACCTGAGAGCAGATGGAGCCCGCTGGCCAGGGTGAGGTaGACCCTGTGTCCTTCTCTG +
Preference number: 3 (lower is better)
Translates to: LTGAWGFRDPGPESRWSPLARVR*TLCPSL
Trigger: CAGAGAAGGACACAGGGTCAACCTCACCCTGGCCAG...CGGGCTCCATCTGCTCTCAGGTCCAGGATCCCGGAAGCCCCACGCACCTGTCAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR-3UTR CAA 90 bp CACCAACGGGTACCTGGGAGGTACTGCTGGTTTGGAGTGGTTCTGGAGGACCCAGACGAGGATGGTGAGTaGGGCTCCTCCAGGGCAGGG +
Preference number: 3 (lower is better)
Translates to: HQRVPGRYCWFGVVLEDPDEDGE*GSSRAG
Trigger: CCCTGCCCTGGAGGAGCCCAACTCACCATCCTCGTC...TGGGTCCTCCAGAACCACTCCAAACCAGCAGTACCTCCCAGGTACCCGTTGGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR CCA 72 bp GGGGATGGGCACCAACGGGTACCTGGGAGGTACTGCTaGTTTGGAGTGGTTCTGGAGGACCCAGGGGCTCTT +
Preference number: 3 (lower is better)
Translates to: GDGHQRVPGRYC*FGVVLEDPGAL
Trigger: AAGAGCCCCTGGGTCCTCCAGAACCACTCCAAACCAGCAGTACCTCCCAGGTACCCGTTGGTGCCCATCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR GCA 72 bp AGTAAGGAGACGGTCTTTGTTCGTGTCCATCCAGACTaGAGGTCCCCTGGGCGTGGGCAGCTCCACCTTTGC +
Preference number: 3 (lower is better)
Translates to: SKETVFVRVHPD*RSPGRGQLHLC
Trigger: GCAAAGGTGGAGCTGCCCACGCCCAGGGGACCTGCAGTCTGGATGGACACGAACAAAGACCGTCTCCTTACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR CCA 72 bp TCCCTTTGGCACTGGGGATGGGCACCAACGGGTACCTaGGAGGTACTGCTGGTTTGGAGTGGTTCTGGAGGA +
Preference number: 3 (lower is better)
Translates to: SLWHWGWAPTGT*EVLLVWSGSGG
Trigger: TCCTCCAGAACCACTCCAAACCAGCAGTACCTCCCAGGTACCCGTTGGTGCCCATCCCCAGTGCCAAAGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR-3UTR CAA 90 bp CCTGTGTCCCTTTGGCACTGGGGATGGGCACCAACGGGTACCTGGGAGGTACTGATCAGCGTTAAAGAGTaGGGCACCGTGATGAGGATG +
Preference number: 3 (lower is better)
Translates to: PVSLWHWGWAPTGTWEVLISVKE*GTVMRM
Trigger: CATCCTCATCACGGTGCCCAACTCTTTAACGCTGAT...CAGTACCTCCCAGGTACCCGTTGGTGCCCATCCCCAGTGCCAAAGGGACACAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR CCA 72 bp CCACCAAAGAGGAATTGGATGCCATCATCGAGGAGGTaGACGAGGATGGTGAGTTGGGCTCCTCCAGGGCAG +
Preference number: 3 (lower is better)
Translates to: PPKRNWMPSSRR*TRMVSWAPPGQ
Trigger: CTGCCCTGGAGGAGCCCAACTCACCATCCTCGTCCACCTCCTCGATGATGGCATCCAATTCCTCTTTGGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR CCA 72 bp GGGTACCTGGGAGGTACTGCTGGTTTGGAGTGGTTCTaGAGGACCCAGGGGCTCTTCCTAATACAAGAGGGG +
Preference number: 3 (lower is better)
Translates to: GYLGGTAGLEWF*RTQGLFLIQEG
Trigger: CCCCTCTTGTATTAGGAAGAGCCCCTGGGTCCTCCAGAACCACTCCAAACCAGCAGTACCTCCCAGGTACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR TCA 72 bp AACAGGCTGAGGCCAGGTCCTACCTCAGCGAGGAGATaGTCGCTGGTGAGTAGAGCTAGCCATTGGGAGAGA +
Preference number: 3 (lower is better)
Translates to: NRLRPGPTSARR*SLVSRASHWER
Trigger: TCTCTCCCAATGGCTAGCTCTACTCACCAGCGATCATCTCCTCGCTGAGGTAGGACCTGGCCTCAGCCTGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR TCA 72 bp GCTGAAGCTGGGGTGAGAGTCTGCCCTTCTACGCTCTaGTTCTCTCTGCTTTCTACAGACGGACCAACAGGC +
Preference number: 3 (lower is better)
Translates to: AEAGVRVCPSTL*FSLLSTDGPTG
Trigger: GCCTGTTGGTCCGTCTGTAGAAAGCAGAGAGAATCAGAGCGTAGAAGGGCAGACTCTCACCCCAGCTTCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR TCA 72 bp CTGTCCTGGAGCTTACTTTGTAGACCAGGTTGGCCTTaGACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGT +
Preference number: 3 (lower is better)
Translates to: LSWSLLCRPGWP*TQKSACLCLPS
Trigger: ACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAACCTGGTCTACAAAGTAAGCTCCAGGACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088248.13
3UTR GCA 72 bp GGAAGTCTTGCCTCTGAGAACTGTCTGAGGCAAAGCTaGCCATCTCTTCTTGTGGTCTCAGCGTCCAAGCGC +
Preference number: 3 (lower is better)
Translates to: GSLASENCLRQS*PSLLVVSASKR
Trigger: GCGCTTGGACGCTGAGACCACAAGAAGAGATGGGCAGCTTTGCCTCAGACAGTTCTCAGAGGCAAGACTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR CCA 72 bp ACCAACGGGTACCTGGGAGGTACTGCTGGTTTGGAGTaGTTCTGGAGGACCCAGGGGCTCTTCCTAATACAA +
Preference number: 3 (lower is better)
Translates to: TNGYLGGTAGLE*FWRTQGLFLIQ
Trigger: TTGTATTAGGAAGAGCCCCTGGGTCCTCCAGAACCACTCCAAACCAGCAGTACCTCCCAGGTACCCGTTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR-3UTR CAA 90 bp AAGAGAGGTGTTTACGCCGATGACCGAGTGGGAAGTCTTGCCTCTGAGAACTGTCTGGTGCTCTTGGCTTaGTGGGTGGGGCTGGGAATA +
Preference number: 3 (lower is better)
Translates to: KRGVYADDRVGSLASENCLVLLA*WVGLGI
Trigger: TATTCCCAGCCCCACCCACAAAGCCAAGAGCACCAG...ACAGTTCTCAGAGGCAAGACTTCCCACTCGGTCATCGGCGTAAACACCTCTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR-3UTR CAA 90 bp GCTCTGATTCTCTCTGCTTTCTACAGACGGACCAACAGGCTGAGGCCAGGTCCTCCCACCAAAGAGGAATaGGATGCCATCATCGAGGAG +
Preference number: 3 (lower is better)
Translates to: ALILSAFYRRTNRLRPGPPTKEE*DAIIEE
Trigger: CTCCTCGATGATGGCATCCAATTCCTCTTTGGTGGG...AGGACCTGGCCTCAGCCTGTTGGTCCGTCTGTAGAAAGCAGAGAGAATCAGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR CCA 72 bp GCCCATCTCTTCTTGTGGTCTCAGCGTCCAAGCGCTTaGCAGATGTTCTGTGACTTTTGCATTCCGTTATTT +
Preference number: 3 (lower is better)
Translates to: AHLFLWSQRPSA*QMFCDFCIPLF
Trigger: AAATAACGGAATGCAAAAGTCACAGAACATCTGCCAAGCGCTTGGACGCTGAGACCACAAGAAGAGATGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR TCA 72 bp CAGATGTTCTGTGACTTTTGCATTCCGTTATTTAGTTaGGGACAAATATTCATTGACCAACTGGTCAAGTCC +
Preference number: 3 (lower is better)
Translates to: QMFCDFCIPLFS*GQIFIDQLVKS
Trigger: GGACTTGACCAGTTGGTCAATGAATATTTGTCCTCAACTAAATAACGGAATGCAAAAGTCACAGAACATCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
CDS-3UTR GCA 90 bp TTTGTTCGTGTCCATCCAGACTGCAGGTCCCCTGGGCGTGGGCAGCTCCACCTTCCTGCTGTAGCCGCTTaGCCACAGGGCCTCGGGCGG +
Preference number: 4 (lower is better)
Translates to: FVRVHPDCRSPGRGQLHLPAVAA*PQGLGR
Trigger: CCGCCCGAGGCCCTGTGGGCAAGCGGCTACAGCAGG...AAGGTGGAGCTGCCCACGCCCAGGGGACCTGCAGTCTGGATGGACACGAACAAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
CDS-3UTR TCA 90 bp TCGAGGAGGTGGACGAGGATGGTGAGTTGGGCTCCTCCAGGGCAGGGGACCGGGCTTGAACAGGTTGTCTaGCTCAGGGAAGGCGGAGAT +
Preference number: 4 (lower is better)
Translates to: SRRWTRMVSWAPPGQGTGLEQVV*LREGGD
Trigger: ATCTCCGCCTTCCCTGAGTCAGACAACCTGTTCAAG...CCCGGTCCCCTGCCCTGGAGGAGCCCAACTCACCATCCTCGTCCACCTCCTCGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR CAA 72 bp ATGGGCACCAACGGGTACCTGGGAGGTACTGCTGGTTaGGAGTGGTTCTGGAGGACCCAGGGGCTCTTCCTA +
Preference number: 4 (lower is better)
Translates to: MGTNGYLGGTAG*EWFWRTQGLFL
Trigger: TAGGAAGAGCCCCTGGGTCCTCCAGAACCACTCCAAACCAGCAGTACCTCCCAGGTACCCGTTGGTGCCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
CDS-3UTR GCA 90 bp GGTATAACCTGTGTCCCTTTGGCACTGGGGATGGGCACCAACGGGTACCTGGGAGGTCTTCATATACGGTaGCGGCTGCTCCGTGGATGG +
Preference number: 4 (lower is better)
Translates to: GITCVPLALGMGTNGYLGGLHIR*RLLRGW
Trigger: CCATCCACGGAGCAGCCGGCACCGTATATGAAGACC...TCCCAGGTACCCGTTGGTGCCCATCCCCAGTGCCAAAGGGACACAGGTTATACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR CAA 72 bp GAAGATGATGGAGGGCGTTCAGTAAGGAGACGGTCTTaGTTCGTGTCCATCCAGACTGCAGGTCCCCTGGGC +
Preference number: 4 (lower is better)
Translates to: EDDGGRSVRRRS*FVSIQTAGPLG
Trigger: GCCCAGGGGACCTGCAGTCTGGATGGACACGAACAAAGACCGTCTCCTTACTGAACGCCCTCCATCATCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR CAA 72 bp GGGCTAAGCAGGCCCCACATCTGCCAACCCCGATCCTaGCAGGCAGCGGTACTATCGACTTTGAAGAGTTCT +
Preference number: 4 (lower is better)
Translates to: GLSRPHICQPRS*QAAVLSTLKSS
Trigger: AGAACTCTTCAAAGTCGATAGTACCGCTGCCTGCAAGGATCGGGGTTGGCAGATGTGGGGCCTGCTTAGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
CDS-3UTR TCA 90 bp GAGAACTGTCTGAGGCAAAGCTGCCCATCTCTTCTTGTGGTCTCAGCGTCCAAGCTCCTTTGGGCTCTGTaGCTGTGGGGTTTTTCCAGA +
Preference number: 4 (lower is better)
Translates to: ENCLRQSCPSLLVVSASKLLWAL*LWGFSR
Trigger: TCTGGAAAAACCCCACAGTCACAGAGCCCAAAGGAG...CTTGGACGCTGAGACCACAAGAAGAGATGGGCAGCTTTGCCTCAGACAGTTCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
CDS-3UTR CCA 90 bp TCTGTGACTTTTGCATTCCGTTATTTAGTTGAGGACAAATATTCATTGACCAACGTGCCGGCTGCTCCGTaGATGGTCCCCACCCACTTG +
Preference number: 4 (lower is better)
Translates to: SVTFAFRYLVEDKYSLTNVPAAP*MVPTHL
Trigger: CAAGTGGGTGGGGACCATCCACGGAGCAGCCGGCAC...GTTGGTCAATGAATATTTGTCCTCAACTAAATAACGGAATGCAAAAGTCACAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
3UTR CAA 72 bp TTTTTATTTTCACACCAGGGCAAGGCTCCGTCACATTaGACATCAAGAGAGGTGTTTACGCCGATGACCGAG +
Preference number: 4 (lower is better)
Translates to: FLFSHQGKAPSH*TSREVFTPMTE
Trigger: CTCGGTCATCGGCGTAAACACCTCTCTTGATGTCAAATGTGACGGAGCCTTGCCCTGGTGTGAAAATAAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
CDS-3UTR GCA 90 bp TCTCTCAATCCTGATTTCTTATTATCTCTACAAAGTCATAGGAAGAGTGACTTGTCACACGGGAAAGGCTaGTCCTTTGGGCTCTGTGAC +
Preference number: 4 (lower is better)
Translates to: SLNPDFLLSLQSHRKSDLSHGKG*SFGLCD
Trigger: GTCACAGAGCCCAAAGGAGCAGCCTTTCCCGTGTGA...CAAGTCACTCTTCCTATGACTTTGTAGAGATAATAAGAAATCAGGATTGAGAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
CDS-3UTR TCA 90 bp TCTCTCAATCCTGATTTCTTATTATCTCTACAAAGTCATAGGAAGAGTGACTTGTGTCACCAGATGTCATaGGGATCATCAGTTCCTGCT +
Preference number: 4 (lower is better)
Translates to: SLNPDFLLSLQSHRKSDLCHQMS*GSSVPA
Trigger: AGCAGGAACTGATGATCCTCATGACATCTGGTGACA...CAAGTCACTCTTCCTATGACTTTGTAGAGATAATAAGAAATCAGGATTGAGAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
CDS-3UTR CAA 90 bp ATCTCTTCTTGTGGTCTCAGCGTCCAAGCGCTTGGCAGATGTTCTGTGACTTTTGGAAAGGCTGCTCCTTaGGGCTCTGTGACTGTGGGG +
Preference number: 5 (lower is better)
Translates to: ISSCGLSVQALGRCSVTFGKAAP*GSVTVG
Trigger: CCCCACAGTCACAGAGCCCAAAGGAGCAGCCTTTCC...AAAAGTCACAGAACATCTGCCAAGCGCTTGGACGCTGAGACCACAAGAAGAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7
CDS-3UTR CAA 90 bp ATCTCTTCTTGTGGTCTCAGCGTCCAAGCGCTTGGCAGATGTTCTGTGACTTTTAAGGCGGAGATTCCTTaGTCACCAGATGTCATGAGG +
Preference number: 5 (lower is better)
Translates to: ISSCGLSVQALGRCSVTFKAEIP*SPDVMR
Trigger: CCTCATGACATCTGGTGACAAAGGAATCTCCGCCTT...AAAAGTCACAGAACATCTGCCAAGCGCTTGGACGCTGAGACCACAAGAAGAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001439.7