Pregenerated sensors for UBE2B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020390Ensembl transcript IDs: ENSMUST00000020657.13, ENSMUST00000109086.8
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTTGGAAATGAGGCTCTCACCTGGCAGAGACTTCGCAGTCCCTCTTaGACAGGTGAGGAAATAAGTGACAAAGTCTCTTGCACTGAAGTT | + |
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Preference number: 1 (lower is better) Translates to: VGNEALTWQRLRSPS*TGEEISDKVSCTEV Trigger: AACTTCAGTGCAAGAGACTTTGTCACTTATTTCCTCACCTGTGCAAGAGGGACTGCGAAGTCTCTGCCAGGTGAGAGCCTCATTTCCAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| 3UTR TCA 90 bp | TCCAGTAAACTAAGATGCAGTACAACTTGGATACAACTGAGGAGGTaGGAAGCAACTCGGCAGGCCCTGGTGCTCAACAGTTCCAGAATA | + |
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Preference number: 1 (lower is better) Translates to: SSKLRCSTTWIQLRR*EATRQALVLNSSRI Trigger: TATTCTGGAACTGTTGAGCACCAGGGCCTGCCGAGTTGCTTCTCACCTCCTCAGTTGTATCCAAGTTGTACTGCATCTTAGTTTACTGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| 3UTR GCA 90 bp | TGCAAATATTCAAGTTACACCAAGATTCCTTCCAAATCTCTGCCTTaGTCAAACCAGCGCAACCGGCCATTGCTAATACTGCGGCACGGT | + |
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Preference number: 1 (lower is better) Translates to: CKYSSYTKIPSKSLP*SNQRNRPLLILRHG Trigger: ACCGTGCCGCAGTATTAGCAATGGCCGGTTGCGCTGGTTTGAGCAAGGCAGAGATTTGGAAGGAATCTTGGTGTAACTTGAATATTTGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| 3UTR GCA 90 bp | CGCAGTCCCTCTTGCACAGGTGAGGAAATAAGTGACAAAGTCTCTTaGACTGAAGTTATGTATTTTAACAGCTTTACACGTAATATTCAT | + |
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Preference number: 1 (lower is better) Translates to: RSPSCTGEEISDKVS*TEVMYFNSFTRNIH Trigger: ATGAATATTACGTGTAAAGCTGTTAAAATACATAACTTCAGTGCAAGAGACTTTGTCACTTATTTCCTCACCTGTGCAAGAGGGACTGCG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| 3UTR-3UTR CCA 90 bp | GCCTTGCTCAAACCAGCGCAACCGGCCATTGCTAATACTGCGGCACGGTGTTTGACGCACATTAACAAGTaGCCCAAATACAGAGCTGGA | + |
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Preference number: 2 (lower is better) Translates to: ALLKPAQPAIANTAARCLTHINK*PKYRAG Trigger: TCCAGCTCTGTATTTGGGCCACTTGTTAATGTGCGT...CAAACACCGTGCCGCAGTATTAGCAATGGCCGGTTGCGCTGGTTTGAGCAAGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| 3UTR-3UTR CCA 90 bp | AAACTCAGGCTCACTGCAATTGCTGTTTCAACTACTAGAGAGACTGCACAAGTGAATGAGGCTCTCACCTaGCAGAGACTTCGCAGTCCC | + |
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Preference number: 2 (lower is better) Translates to: KLRLTAIAVSTTRETAQVNEALT*QRLRSP Trigger: GGGACTGCGAAGTCTCTGCCAGGTGAGAGCCTCATT...CACTTGTGCAGTCTCTCTAGTAGTTGAAACAGCAATTGCAGTGAGCCTGAGTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| 3UTR CAA 90 bp | TTGCAAATATTCAAGTTACACCAAGATTCCTTCCAAATCTCTGCCTaGCTCAAACCAGCGCAACCGGCCATTGCTAATACTGCGGCACGG | + |
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Preference number: 2 (lower is better) Translates to: LQIFKLHQDSFQISA*LKPAQPAIANTAAR Trigger: CCGTGCCGCAGTATTAGCAATGGCCGGTTGCGCTGGTTTGAGCAAGGCAGAGATTTGGAAGGAATCTTGGTGTAACTTGAATATTTGCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| 3UTR-3UTR TCA 90 bp | TATTCAAGTTACACCAAGATTCCTTCCAAATCTCTGCCTTGCTCAAACCAGCGCTTCTGCAGTTGGAAATaGGGCTCTCACCTGGCAGAG | + |
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Preference number: 2 (lower is better) Translates to: YSSYTKIPSKSLPCSNQRFCSWK*GSHLAE Trigger: CTCTGCCAGGTGAGAGCCTCATTTCCAACTGCAGAA...GCGCTGGTTTGAGCAAGGCAGAGATTTGGAAGGAATCTTGGTGTAACTTGAATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| 3UTR CAA 90 bp | GAATTTGCAGACTTTCTTGATAAACAGAAGAGTGACCTTCTGCAGTaGGAAATGAGGCTCTCACCTGGCAGAGACTTCGCAGTCCCTCTT | + |
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Preference number: 2 (lower is better) Translates to: EFADFLDKQKSDLLQ*EMRLSPGRDFAVPL Trigger: AAGAGGGACTGCGAAGTCTCTGCCAGGTGAGAGCCTCATTTCCAACTGCAGAAGGTCACTCTTCTGTTTATCAAGAAAGTCTGCAAATTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| 3UTR-3UTR GCA 90 bp | AAGAAACTCAGGCTCACTGCAATTGCTGTTTCAACTACTAGAGAGACTGCACAATCCAAATCTCTGCCTTaGTCAAACCAGCGCAACCGG | + |
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Preference number: 2 (lower is better) Translates to: KKLRLTAIAVSTTRETAQSKSLP*SNQRNR Trigger: CCGGTTGCGCTGGTTTGAGCAAGGCAGAGATTTGGA...TTGTGCAGTCTCTCTAGTAGTTGAAACAGCAATTGCAGTGAGCCTGAGTTTCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| 3UTR-3UTR TCA 90 bp | TATTCAAGTTACACCAAGATTCCTTCCAAATCTCTGCCTTGCTCAAACCAGCGCTTAATCAAAAGCCTGTaGAGGTGCTGCCACACAGCA | + |
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Preference number: 2 (lower is better) Translates to: YSSYTKIPSKSLPCSNQRLIKSL*RCCHTA Trigger: TGCTGTGTGGCAGCACCTTCACAGGCTTTTGATTAA...GCGCTGGTTTGAGCAAGGCAGAGATTTGGAAGGAATCTTGGTGTAACTTGAATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| 3UTR-3UTR TCA 90 bp | AAACTCAGGCTCACTGCAATTGCTGTTTCAACTACTAGAGAGACTGCACAAGTGTGGAGGTGCCAATTGTaGAGTCACAAAAGGTACAGT | + |
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Preference number: 2 (lower is better) Translates to: KLRLTAIAVSTTRETAQVWRCQL*SHKRYS Trigger: ACTGTACCTTTTGTGACTTCACAATTGGCACCTCCA...CACTTGTGCAGTCTCTCTAGTAGTTGAAACAGCAATTGCAGTGAGCCTGAGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| 3UTR-3UTR TCA 90 bp | AAACTCAGGCTCACTGCAATTGCTGTTTCAACTACTAGAGAGACTGCACAAGTGGTGTATATTCTGTCATaGAAACTCCACACCAACATT | + |
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Preference number: 2 (lower is better) Translates to: KLRLTAIAVSTTRETAQVVYILS*KLHTNI Trigger: AATGTTGGTGTGGAGTTTTCATGACAGAATATACAC...CACTTGTGCAGTCTCTCTAGTAGTTGAAACAGCAATTGCAGTGAGCCTGAGTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| 3UTR-3UTR CAA 90 bp | GCCACACAGCAGAGGAAGTCAGCTCTGCTCGTGGTGGAGGTGCCAATTGTGAAGAGCCGGAGATCAGAATaGGTTTTAGAATCGAATTTG | + |
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Preference number: 3 (lower is better) Translates to: ATQQRKSALLVVEVPIVKSRRSE*VLESNL Trigger: CAAATTCGATTCTAAAACCAATTCTGATCTCCGGCT...CTTCACAATTGGCACCTCCACCACGAGCAGAGCTGACTTCCTCTGCTGTGTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| 3UTR-3UTR CAA 90 bp | TACACCAAGATTCCTTCCAAATCTCTGCCTTGCTCAAACCAGCGCAACCGGCCAACTGCGGCACGGTGTTaGGTAAATGGTGATGGTTTT | + |
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Preference number: 3 (lower is better) Translates to: YTKIPSKSLPCSNQRNRPTAARC*VNGDGF Trigger: AAAACCATCACCATTTACCAAACACCGTGCCGCAGT...TGGCCGGTTGCGCTGGTTTGAGCAAGGCAGAGATTTGGAAGGAATCTTGGTGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| 3UTR TCA 72 bp | TTGATAAACAGAAGAGTGACCTTCTGCAGTTGGAAATaGGGCTCTCACCTGGCAGAGACTTCGCAGTCCCTC | + |
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Preference number: 3 (lower is better) Translates to: LINRRVTFCSWK*GSHLAETSQSL Trigger: GAGGGACTGCGAAGTCTCTGCCAGGTGAGAGCCTCATTTCCAACTGCAGAAGGTCACTCTTCTGTTTATCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| 3UTR-3UTR CAA 90 bp | AAACTCAGGCTCACTGCAATTGCTGTTTCAACTACTAGAGAGACTGCACAAGTGAGTGACCTTCTGCAGTaGGAAATGAGGCTCTCACCT | + |
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Preference number: 3 (lower is better) Translates to: KLRLTAIAVSTTRETAQVSDLLQ*EMRLSP Trigger: AGGTGAGAGCCTCATTTCCAACTGCAGAAGGTCACT...CACTTGTGCAGTCTCTCTAGTAGTTGAAACAGCAATTGCAGTGAGCCTGAGTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| 3UTR GCA 72 bp | TCAAGTTACACCAAGATTCCTTCCAAATCTCTGCCTTaGTCAAACCAGCGCAACCGGCCATTGCTAATACTG | + |
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Preference number: 3 (lower is better) Translates to: SSYTKIPSKSLP*SNQRNRPLLIL Trigger: CAGTATTAGCAATGGCCGGTTGCGCTGGTTTGAGCAAGGCAGAGATTTGGAAGGAATCTTGGTGTAACTTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| CDS-3UTR GCA 90 bp | GCTGCCACACAGCAGAGGAAGTCAGCTCTGCTCGTGGTGGAGGTGCCAATTGTGTTCCTGATAAAGCTGTaGTGCTTGGCTGTTGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: AATQQRKSALLVVEVPIVFLIKL*CLAVGW Trigger: CCAGCCAACAGCCAAGCAGCACAGCTTTATCAGGAA...CACAATTGGCACCTCCACCACGAGCAGAGCTGACTTCCTCTGCTGTGTGGCAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| CDS-3UTR CCA 90 bp | TACACCAAGATTCCTTCCAAATCTCTGCCTTGCTCAAACCAGCGCAACCGGCCAGTGCTGCTTGGCTGTTaGCTGGACTGTTTGGATTCG | + |
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Preference number: 4 (lower is better) Translates to: YTKIPSKSLPCSNQRNRPVLLGC*LDCLDS Trigger: CGAATCCAAACAGTCCAGCCAACAGCCAAGCAGCAC...TGGCCGGTTGCGCTGGTTTGAGCAAGGCAGAGATTTGGAAGGAATCTTGGTGTA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| CDS-3UTR TCA 90 bp | TTGCTGTTTCAACTACTAGAGAGACTGCACAAGTGGTTCAACAGAATTTACTTGCAGATGGGGCGCCACTaGCCCCCACAGGTGGGTCCT | + |
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Preference number: 4 (lower is better) Translates to: LLFQLLERLHKWFNRIYLQMGRH*PPQVGP Trigger: AGGACCCACCTGTGGGGGTCAGTGGCGCCCCATCTG...CAAGTAAATTCTGTTGAACCACTTGTGCAGTCTCTCTAGTAGTTGAAACAGCAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| CDS-3UTR TCA 90 bp | GCCTTGCTCAAACCAGCGCAACCGGCCATTGCTAATACTGCGGCACGGTGTTTGTCATCCAGCAGAGACTaGATGGAAGTTAAGATGGAA | + |
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Preference number: 4 (lower is better) Translates to: ALLKPAQPAIANTAARCLSSSRD*MEVKME Trigger: TTCCATCTTAACTTCCATTCAGTCTCTGCTGGATGA...CAAACACCGTGCCGCAGTATTAGCAATGGCCGGTTGCGCTGGTTTGAGCAAGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| CDS-3UTR GCA 90 bp | GCCACACAGCAGAGGAAGTCAGCTCTGCTCGTGGTGGAGGTGCCAATTGTGAAGGGACTCCATCGATTCTaGAGGATATCTAAACATATG | + |
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Preference number: 4 (lower is better) Translates to: ATQQRKSALLVVEVPIVKGLHRF*RISKHM Trigger: CATATGTTTAGATATCCTGCAGAATCGATGGAGTCC...CTTCACAATTGGCACCTCCACCACGAGCAGAGCTGACTTCCTCTGCTGTGTGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| CDS-3UTR CCA 90 bp | AAGAAACTCAGGCTCACTGCAATTGCTGTTTCAACTACTAGAGAGACTGCACAAACTGACCCCCACAGGTaGGTCCTCTTGCAATCGCTT | + |
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Preference number: 4 (lower is better) Translates to: KKLRLTAIAVSTTRETAQTDPHR*VLLQSL Trigger: AAGCGATTGCAAGAGGACCCACCTGTGGGGGTCAGT...TTGTGCAGTCTCTCTAGTAGTTGAAACAGCAATTGCAGTGAGCCTGAGTTTCTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| CDS-3UTR GCA 90 bp | AAACTCAGGCTCACTGCAATTGCTGTTTCAACTACTAGAGAGACTGCACAAGTGCTGATAAAGCTGTGCTaGTTGGCTGTTGGCTGGACT | + |
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Preference number: 4 (lower is better) Translates to: KLRLTAIAVSTTRETAQVLIKLC*LAVGWT Trigger: AGTCCAGCCAACAGCCAAGCAGCACAGCTTTATCAG...CACTTGTGCAGTCTCTCTAGTAGTTGAAACAGCAATTGCAGTGAGCCTGAGTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| CDS-3UTR CCA 90 bp | TTGCTGTTTCAACTACTAGAGAGACTGCACAAGTGGTTCAACAGAATTTACTTGGATGTTGTTTTCAGATaGGGCGCCACTGACCCCCAC | + |
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Preference number: 4 (lower is better) Translates to: LLFQLLERLHKWFNRIYLDVVFR*GATDPH Trigger: GTGGGGGTCAGTGGCGCCCCATCTGAAAACAACATC...CAAGTAAATTCTGTTGAACCACTTGTGCAGTCTCTCTAGTAGTTGAAACAGCAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| 3UTR CAA 72 bp | TTCAAGTTACACCAAGATTCCTTCCAAATCTCTGCCTaGCTCAAACCAGCGCAACCGGCCATTGCTAATACT | + |
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Preference number: 4 (lower is better) Translates to: FKLHQDSFQISA*LKPAQPAIANT Trigger: AGTATTAGCAATGGCCGGTTGCGCTGGTTTGAGCAAGGCAGAGATTTGGAAGGAATCTTGGTGTAACTTGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| 3UTR CAA 72 bp | GCGCAACCGGCCATTGCTAATACTGCGGCACGGTGTTaGGTAAATGGTGATGGTTTTACTTTCTTTTTAATC | + |
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Preference number: 4 (lower is better) Translates to: AQPAIANTAARC*VNGDGFTFFLI Trigger: GATTAAAAAGAAAGTAAAACCATCACCATTTACCAAACACCGTGCCGCAGTATTAGCAATGGCCGGTTGCGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| CDS-3UTR GCA 90 bp | TATTCAAGTTACACCAAGATTCCTTCCAAATCTCTGCCTTGCTCAAACCAGCGCGAATCATTCCAGCTTTaGTCAACAATGGCCGAAACT | + |
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Preference number: 4 (lower is better) Translates to: YSSYTKIPSKSLPCSNQRESFQL*STMAET Trigger: AGTTTCGGCCATTGTTGAGCAAAGCTGGAATGATTC...GCGCTGGTTTGAGCAAGGCAGAGATTTGGAAGGAATCTTGGTGTAACTTGAATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| CDS-3UTR CCA 90 bp | GCTAATACTGCGGCACGGTGTTTGGTAAATGGTGATGGTTTTACTTTCTTTTTAGTTGGCTGGACTGTTTaGATTCGGTTCATCCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: ANTAARCLVNGDGFTFFLVGWTV*IRFIQQ Trigger: CTGCTGGATGAACCGAATCCAAACAGTCCAGCCAAC...TAAAAAGAAAGTAAAACCATCACCATTTACCAAACACCGTGCCGCAGTATTAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| CDS-3UTR CCA 90 bp | TTGCTGTTTCAACTACTAGAGAGACTGCACAAGTGGTTCAACAGAATTTACTTGTGCTTGGCTGTTGGCTaGACTGTTTGGATTCGGTTC | + |
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Preference number: 4 (lower is better) Translates to: LLFQLLERLHKWFNRIYLCLAVG*TVWIRF Trigger: GAACCGAATCCAAACAGTCCAGCCAACAGCCAAGCA...CAAGTAAATTCTGTTGAACCACTTGTGCAGTCTCTCTAGTAGTTGAAACAGCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| CDS-3UTR CCA 90 bp | GCTAATACTGCGGCACGGTGTTTGGTAAATGGTGATGGTTTTACTTTCTTTTTAAAGAGACATCATATGTaGGACTCCATCGATTCTGCA | + |
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Preference number: 4 (lower is better) Translates to: ANTAARCLVNGDGFTFFLKRHHM*DSIDSA Trigger: TGCAGAATCGATGGAGTCCCACATATGATGTCTCTT...TAAAAAGAAAGTAAAACCATCACCATTTACCAAACACCGTGCCGCAGTATTAGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| CDS-3UTR GCA 90 bp | GCTAATACTGCGGCACGGTGTTTGGTAAATGGTGATGGTTTTACTTTCTTTTTATGGTCCAAATATAACTaGATTCCACTGCATGATGTT | + |
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Preference number: 4 (lower is better) Translates to: ANTAARCLVNGDGFTFFLWSKYN*IPLHDV Trigger: AACATCATGCAGTGGAATGCAGTTATATTTGGACCA...TAAAAAGAAAGTAAAACCATCACCATTTACCAAACACCGTGCCGCAGTATTAGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| CDS-3UTR CCA 90 bp | GAATTGGTTTTAGAATCGAATTTGCAGACTTTCTTGATAAACAGAAGAGTGACCCCAGCAGAGACTGAATaGAAGTTAAGATGGAAGAGA | + |
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Preference number: 4 (lower is better) Translates to: ELVLESNLQTFLINRRVTPAETE*KLRWKR Trigger: TCTCTTCCATCTTAACTTCCATTCAGTCTCTGCTGG...GGTCACTCTTCTGTTTATCAAGAAAGTCTGCAAATTCGATTCTAAAACCAATTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| CDS-3UTR CCA 90 bp | GAATTGGTTTTAGAATCGAATTTGCAGACTTTCTTGATAAACAGAAGAGTGACCAGCTTTGCTCAACAATaGCCGAAACTCTCTTCTCAT | + |
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Preference number: 4 (lower is better) Translates to: ELVLESNLQTFLINRRVTSFAQQ*PKLSSH Trigger: ATGAGAAGAGAGTTTCGGCCATTGTTGAGCAAAGCT...GGTCACTCTTCTGTTTATCAAGAAAGTCTGCAAATTCGATTCTAAAACCAATTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| CDS-3UTR GCA 90 bp | TTGCTGTTTCAACTACTAGAGAGACTGCACAAGTGGTTCAACAGAATTTACTTGATAACTGCATTCCACTaGATGATGTTGTTTTCAGAT | + |
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Preference number: 4 (lower is better) Translates to: LLFQLLERLHKWFNRIYLITAFH*MMLFSD Trigger: ATCTGAAAACAACATCATGCAGTGGAATGCAGTTAT...CAAGTAAATTCTGTTGAACCACTTGTGCAGTCTCTCTAGTAGTTGAAACAGCAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| 3UTR CAA 72 bp | TCAGAATTGGTTTTAGAATCGAATTTGCAGACTTTCTaGATAAACAGAAGAGTGACCTTCTGCAGTTGGAAA | + |
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Preference number: 4 (lower is better) Translates to: SELVLESNLQTF*INRRVTFCSWK Trigger: TTTCCAACTGCAGAAGGTCACTCTTCTGTTTATCAAGAAAGTCTGCAAATTCGATTCTAAAACCAATTCTGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| CDS-3UTR CAA 90 bp | AAACTCAGGCTCACTGCAATTGCTGTTTCAACTACTAGAGAGACTGCACAAGTGTGTGCTGCTTGGCTGTaGGCTGGACTGTTTGGATTC | + |
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Preference number: 5 (lower is better) Translates to: KLRLTAIAVSTTRETAQVCAAWL*AGLFGF Trigger: GAATCCAAACAGTCCAGCCAACAGCCAAGCAGCACA...CACTTGTGCAGTCTCTCTAGTAGTTGAAACAGCAATTGCAGTGAGCCTGAGTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| CDS-3UTR CAA 90 bp | AAGAAACTCAGGCTCACTGCAATTGCTGTTTCAACTACTAGAGAGACTGCACAATCCTCTTGCAATCGCTaGAAATCCCGCATGAGCCTC | + |
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Preference number: 5 (lower is better) Translates to: KKLRLTAIAVSTTRETAQSSCNR*KSRMSL Trigger: GAGGCTCATGCGGGATTTCAAGCGATTGCAAGAGGA...TTGTGCAGTCTCTCTAGTAGTTGAAACAGCAATTGCAGTGAGCCTGAGTTTCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| CDS-3UTR CAA 90 bp | AAACTCAGGCTCACTGCAATTGCTGTTTCAACTACTAGAGAGACTGCACAAGTGTGTTGGCTGGACTGTTaGGATTCGGTTCATCCAGCA | + |
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Preference number: 5 (lower is better) Translates to: KLRLTAIAVSTTRETAQVCWLDC*DSVHPA Trigger: TGCTGGATGAACCGAATCCAAACAGTCCAGCCAACA...CACTTGTGCAGTCTCTCTAGTAGTTGAAACAGCAATTGCAGTGAGCCTGAGTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| CDS-3UTR CAA 90 bp | AAACTCAGGCTCACTGCAATTGCTGTTTCAACTACTAGAGAGACTGCACAAGTGATAAAGCTGTGCTGCTaGGCTGTTGGCTGGACTGTT | + |
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Preference number: 5 (lower is better) Translates to: KLRLTAIAVSTTRETAQVIKLCC*AVGWTV Trigger: AACAGTCCAGCCAACAGCCAAGCAGCACAGCTTTAT...CACTTGTGCAGTCTCTCTAGTAGTTGAAACAGCAATTGCAGTGAGCCTGAGTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| CDS-3UTR CAA 90 bp | TTGCTGTTTCAACTACTAGAGAGACTGCACAAGTGGTTCAACAGAATTTACTTGTTCCACTGCATGATGTaGTTTTCAGATGGGGCGCCA | + |
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Preference number: 5 (lower is better) Translates to: LLFQLLERLHKWFNRIYLFHCMM*FSDGAP Trigger: TGGCGCCCCATCTGAAAACAACATCATGCAGTGGAA...CAAGTAAATTCTGTTGAACCACTTGTGCAGTCTCTCTAGTAGTTGAAACAGCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020657.13 |
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| CDS CCA 90 bp | CCAGCAGAGACTGAATGGAAGTTAAGATGGAAGAGACATCATATGTaGGACTCCATCGATTCTGCAGGATATCTAAACATATGCTACCAT | + |
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Preference number: 5 (lower is better) Translates to: PAETEWKLRWKRHHM*DSIDSAGYLNICYH Trigger: ATGGTAGCATATGTTTAGATATCCTGCAGAATCGATGGAGTCCCACATATGATGTCTCTTCCATCTTAACTTCCATTCAGTCTCTGCTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020657.13 ENSMUST00000109086.8 |
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| CDS GCA 90 bp | GAAGTTAAGATGGAAGAGACATCATATGTGGGACTCCATCGATTCTaGAGGATATCTAAACATATGCTACCATCAGCATACACATTTGGA | + |
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Preference number: 5 (lower is better) Translates to: EVKMEETSYVGLHRF*RISKHMLPSAYTFG Trigger: TCCAAATGTGTATGCTGATGGTAGCATATGTTTAGATATCCTGCAGAATCGATGGAGTCCCACATATGATGTCTCTTCCATCTTAACTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020657.13 ENSMUST00000109086.8 |
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| CDS CCA 72 bp | TATAACTGCATTCCACTGCATGATGTTGTTTTCAGATaGGGCGCCACTGACCCCCACAGGTGGGTCCTCTTG | + |
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Preference number: 6 (lower is better) Translates to: YNCIPLHDVVFR*GATDPHRWVLL Trigger: CAAGAGGACCCACCTGTGGGGGTCAGTGGCGCCCCATCTGAAAACAACATCATGCAGTGGAATGCAGTTATA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020657.13 ENSMUST00000109086.8 |
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| CDS CCA 72 bp | GTTTTCCTGATAAAGCTGTGCTGCTTGGCTGTTGGCTaGACTGTTTGGATTCGGTTCATCCAGCAGAGACTG | + |
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Preference number: 6 (lower is better) Translates to: VFLIKLCCLAVG*TVWIRFIQQRL Trigger: CAGTCTCTGCTGGATGAACCGAATCCAAACAGTCCAGCCAACAGCCAAGCAGCACAGCTTTATCAGGAAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020657.13 ENSMUST00000109086.8 |
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| CDS GCA 72 bp | ATGGAAGAGACATCATATGTGGGACTCCATCGATTCTaGAGGATATCTAAACATATGCTACCATCAGCATAC | + |
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Preference number: 6 (lower is better) Translates to: MEETSYVGLHRF*RISKHMLPSAY Trigger: GTATGCTGATGGTAGCATATGTTTAGATATCCTGCAGAATCGATGGAGTCCCACATATGATGTCTCTTCCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020657.13 ENSMUST00000109086.8 |
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| CDS CCA 72 bp | ACTGAATGGAAGTTAAGATGGAAGAGACATCATATGTaGGACTCCATCGATTCTGCAGGATATCTAAACATA | + |
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Preference number: 6 (lower is better) Translates to: TEWKLRWKRHHM*DSIDSAGYLNI Trigger: TATGTTTAGATATCCTGCAGAATCGATGGAGTCCCACATATGATGTCTCTTCCATCTTAACTTCCATTCAGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020657.13 ENSMUST00000109086.8 |
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