Pregenerated sensors for UBE2A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000016308Ensembl transcript IDs: ENSMUST00000016452.11, ENSMUST00000200835.4, ENSMUST00000201068.4, ENSMUST00000201117.4, ENSMUST00000202812.2, ENSMUST00000202991.4
Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACCTCTATAAAAACCAACTCTGAAGGCCAGAATTCCGAAACAGAATaGGTTTACACTATGAATATCTCGCACAAAGTGGACTGTGTCAGT | + |
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Preference number: 1 (lower is better) Translates to: TSIKTNSEGQNSETE*VYTMNISHKVDCVS Trigger: ACTGACACAGTCCACTTTGTGCGAGATATTCATAGTGTAAACGCATTCTGTTTCGGAATTCTGGCCTTCAGAGTTGGTTTTTATAGAGGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 |
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| 3UTR TCA 90 bp | ATACATTCTTCGCCAAATCAAATACAAGGGAAGGAATGGCCAGGATaGAACACAGCAGCAATCATTTTGTTACAAATAACATCCTGGTCA | + |
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Preference number: 1 (lower is better) Translates to: IHSSPNQIQGKEWPG*NTAAIILLQITSWS Trigger: TGACCAGGATGTTATTTGTAACAAAATGATTGCTGCTGTGTTTCATCCTGGCCATTCCTTCCCTTGTATTTGATTTGGCGAAGAATGTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 |
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| 3UTR CCA 90 bp | ACATATGCAATTGTAATGTTTGCAAGTAACCCAGGTACAGTACATTaGATTTCAAATAATGTCTCTGATGCTCCACAGGAGGACAGAAAG | + |
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Preference number: 1 (lower is better) Translates to: TYAIVMFASNPGTVH*ISNNVSDAPQEDRK Trigger: CTTTCTGTCCTCCTGTGGAGCATCAGAGACATTATTTGAAATCCAATGTACTGTACCTGGGTTACTTGCAAACATTACAATTGCATATGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000016452.11 ENSMUST00000200835.4 ENSMUST00000201068.4 ENSMUST00000202812.2 |
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| 3UTR-3UTR CCA 90 bp | CCAGGTACAGTACATTGGATTTCAAATAATGTCTCTGATGCTCCACAGGAGGACTTCTCCTGGTACAGCTaGGCAGCCTGGCTGTTTGCT | + |
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Preference number: 2 (lower is better) Translates to: PGTVHWISNNVSDAPQEDFSWYS*AAWLFA Trigger: AGCAAACAGCCAGGCTGCCCAGCTGTACCAGGAGAA...GTCCTCCTGTGGAGCATCAGAGACATTATTTGAAATCCAATGTACTGTACCTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200835.4 |
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| 3UTR CAA 90 bp | CAGCCTCTTCTTCTGCTCTACCCTGAGTCAACAGTCGCGCCAGCTTaGTTCTACTATTGCAGAAACACGCTTTTCATATTCCCGCTTGTT | + |
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Preference number: 2 (lower is better) Translates to: QPLLLLYPESTVAPA*FYYCRNTLFIFPLV Trigger: AACAAGCGGGAATATGAAAAGCGTGTTTCTGCAATAGTAGAACAAAGCTGGCGCGACTGTTGACTCAGGGTAGAGCAGAAGAAGAGGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200835.4 |
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| 3UTR-3UTR TCA 90 bp | TTGAGGCTGGAGATGAGATACAACAAAGGGACATATGCAATTGTAATGTTTGCATCTTCTGCTCTACCCTaGGTCAACAGTCGCGCCAGC | + |
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Preference number: 2 (lower is better) Translates to: LRLEMRYNKGTYAIVMFASSALP*VNSRAS Trigger: GCTGGCGCGACTGTTGACTCAGGGTAGAGCAGAAGA...TGCAAACATTACAATTGCATATGTCCCTTTGTTGTATCTCATCTCCAGCCTCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200835.4 |
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| 3UTR-3UTR GCA 90 bp | AAAGGGACATATGCAATTGTAATGTTTGCAAGTAACCCAGGTACAGTACATTGGGCCAGCCTCTTCTTCTaGTCTACCCTGAGTCAACAG | + |
|
Preference number: 2 (lower is better) Translates to: KGTYAIVMFASNPGTVHWASLFF*STLSQQ Trigger: CTGTTGACTCAGGGTAGAGCAGAAGAAGAGGCTGGC...CCAATGTACTGTACCTGGGTTACTTGCAAACATTACAATTGCATATGTCCCTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200835.4 |
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| 3UTR-3UTR CCA 90 bp | AACTGCTTTGAGGCTGGAGATGAGATACAACAAAGGGACATATGCAATTGTAATTACAGCTGGGCAGCCTaGCTGTTTGCTGGACTATTG | + |
|
Preference number: 2 (lower is better) Translates to: NCFEAGDEIQQRDICNCNYSWAA*LFAGLL Trigger: CAATAGTCCAGCAAACAGCCAGGCTGCCCAGCTGTA...ATTACAATTGCATATGTCCCTTTGTTGTATCTCATCTCCAGCCTCAAAGCAGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200835.4 |
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| 3UTR-3UTR CCA 90 bp | CCAGGTACAGTACATTGGATTTCAAATAATGTCTCTGATGCTCCACAGGAGGACTATACATTTTTCTTATaGCCAGCCTCTTCTTCTGCT | + |
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Preference number: 2 (lower is better) Translates to: PGTVHWISNNVSDAPQEDYTFFL*PASSSA Trigger: AGCAGAAGAAGAGGCTGGCCATAAGAAAAATGTATA...GTCCTCCTGTGGAGCATCAGAGACATTATTTGAAATCCAATGTACTGTACCTGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000016452.11 ENSMUST00000200835.4 ENSMUST00000201068.4 ENSMUST00000202812.2 |
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| 3UTR-3UTR CCA 90 bp | CAGGTACAGTACATTGGATTTCAAATAATGTCTCTGATGCTCCACAGGAGGACATATACATTTTTCTTATaGCCAGCCTCTTCTTCTGCT | + |
|
Preference number: 2 (lower is better) Translates to: QVQYIGFQIMSLMLHRRTYTFFL*PASSSA Trigger: AGCAGAAGAAGAGGCTGGCCATAAGAAAAATGTATA...TGTCCTCCTGTGGAGCATCAGAGACATTATTTGAAATCCAATGTACTGTACCTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000016452.11 ENSMUST00000200835.4 ENSMUST00000201068.4 ENSMUST00000202812.2 |
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| 3UTR-3UTR CCA 90 bp | ACCTCTATAAAAACCAACTCTGAAGGCCAGAATTCCGAAACAGAATGCGTTTACTATACATTTTTCTTATaGCCAGCCTCTTCTTCTGCT | + |
|
Preference number: 2 (lower is better) Translates to: TSIKTNSEGQNSETECVYYTFFL*PASSSA Trigger: AGCAGAAGAAGAGGCTGGCCATAAGAAAAATGTATA...GTAAACGCATTCTGTTTCGGAATTCTGGCCTTCAGAGTTGGTTTTTATAGAGGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 |
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| 3UTR-3UTR CCA 90 bp | CAGGTACAGTACATTGGATTTCAAATAATGTCTCTGATGCTCCACAGGAGGACACCAGGTACAGTACATTaGATTTCAAATAATGTCTCT | + |
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Preference number: 2 (lower is better) Translates to: QVQYIGFQIMSLMLHRRTPGTVH*ISNNVS Trigger: AGAGACATTATTTGAAATCCAATGTACTGTACCTGG...TGTCCTCCTGTGGAGCATCAGAGACATTATTTGAAATCCAATGTACTGTACCTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000016452.11 ENSMUST00000200835.4 ENSMUST00000201068.4 ENSMUST00000202812.2 |
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| 3UTR-3UTR GCA 90 bp | ACAGTACATTGGATTTCAAATAATGTCTCTGATGCTCCACAGGAGGACAGAAAGGCTTTGTTCTACTATTaGAGAAACACGCTTTTCATA | + |
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Preference number: 2 (lower is better) Translates to: TVHWISNNVSDAPQEDRKALFYY*RNTLFI Trigger: TATGAAAAGCGTGTTTCTGCAATAGTAGAACAAAGC...CTTTCTGTCCTCCTGTGGAGCATCAGAGACATTATTTGAAATCCAATGTACTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200835.4 |
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| 3UTR-3UTR CCA 90 bp | TTTGAGGCTGGAGATGAGATACAACAAAGGGACATATGCAATTGTAATGTTTGCCCAGGTACAGTACATTaGATTTCAAATAATGTCTCT | + |
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Preference number: 2 (lower is better) Translates to: FEAGDEIQQRDICNCNVCPGTVH*ISNNVS Trigger: AGAGACATTATTTGAAATCCAATGTACTGTACCTGG...GCAAACATTACAATTGCATATGTCCCTTTGTTGTATCTCATCTCCAGCCTCAAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000016452.11 ENSMUST00000200835.4 ENSMUST00000201068.4 |
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| 3UTR CCA 72 bp | CGCTTTTCATATTCCCGCTTGTTCTCCTGGTACAGCTaGGCAGCCTGGCTGTTTGCTGGACTATTGGGATTA | + |
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Preference number: 3 (lower is better) Translates to: RFSYSRLFSWYS*AAWLFAGLLGL Trigger: TAATCCCAATAGTCCAGCAAACAGCCAGGCTGCCCAGCTGTACCAGGAGAACAAGCGGGAATATGAAAAGCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200835.4 |
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| 3UTR TCA 72 bp | TTTTTCTTATGGCCAGCCTCTTCTTCTGCTCTACCCTaGGTCAACAGTCGCGCCAGCTTTGTTCTACTATTG | + |
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Preference number: 3 (lower is better) Translates to: FFLWPASSSALP*VNSRASFVLLL Trigger: CAATAGTAGAACAAAGCTGGCGCGACTGTTGACTCAGGGTAGAGCAGAAGAAGAGGCTGGCCATAAGAAAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000200835.4 |
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| 3UTR-3UTR CAA 90 bp | AGGGAAGGAATGGCCAGGATGAAACACAGCAGCAATCATTTTGTTACAAATAACTTTTCATATTCCCGCTaGTTCTCCTGGTACAGCTGG | + |
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Preference number: 3 (lower is better) Translates to: REGMARMKHSSNHFVTNNFSYSR*FSWYSW Trigger: CCAGCTGTACCAGGAGAACAAGCGGGAATATGAAAA...GTTATTTGTAACAAAATGATTGCTGCTGTGTTTCATCCTGGCCATTCCTTCCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200835.4 |
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| 3UTR GCA 72 bp | GCTGGGTCCTTTAGCAGTCTCCTTGCTACCAGTAAGTaGCATCTTGTAGTTCATGTTCATATTGCTTACAAA | + |
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Preference number: 3 (lower is better) Translates to: AGSFSSLLATSK*HLVVHVHIAYK Trigger: TTTGTAAGCAATATGAACATGAACTACAAGATGGCACTTACTGGTAGCAAGGAGACTGCTAAAGGACCCAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 |
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| 3UTR-3UTR CAA 90 bp | GGAATGGCCAGGATGAAACACAGCAGCAATCATTTTGTTACAAATAACATCCTGAACCTGATAACTGCTTaGAGGCTGGAGATGAGATAC | + |
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Preference number: 3 (lower is better) Translates to: GMARMKHSSNHFVTNNILNLITA*RLEMRY Trigger: GTATCTCATCTCCAGCCTCAAAGCAGTTATCAGGTT...CAGGATGTTATTTGTAACAAAATGATTGCTGCTGTGTTTCATCCTGGCCATTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016452.11 ENSMUST00000200835.4 ENSMUST00000201068.4 |
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| 3UTR TCA 72 bp | CTAGTCCTGTTCTTACACCTCTATAAAAACCAACTCTaGAGGCCAGAATTCCGAAACAGAATGCGTTTACAC | + |
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Preference number: 3 (lower is better) Translates to: LVLFLHLYKNQL*RPEFRNRMRLH Trigger: GTGTAAACGCATTCTGTTTCGGAATTCTGGCCTTCAGAGTTGGTTTTTATAGAGGTGTAAGAACAGGACTAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 |
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| 3UTR-3UTR CAA 90 bp | AGGATGAAACACAGCAGCAATCATTTTGTTACAAATAACATCCTGGTCACCAGAAACCTGATAACTGCTTaGAGGCTGGAGATGAGATAC | + |
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Preference number: 3 (lower is better) Translates to: RMKHSSNHFVTNNILVTRNLITA*RLEMRY Trigger: GTATCTCATCTCCAGCCTCAAAGCAGTTATCAGGTT...TCTGGTGACCAGGATGTTATTTGTAACAAAATGATTGCTGCTGTGTTTCATCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016452.11 ENSMUST00000200835.4 ENSMUST00000201068.4 |
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| 3UTR TCA 72 bp | ATTGCAGATATGGGCAATAGAAGGTTCTCAAAACACTaGAAGCATGCAGCATTAACTCAGGATTTGAATGGG | + |
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Preference number: 3 (lower is better) Translates to: IADMGNRRFSKH*KHAALTQDLNG Trigger: CCCATTCAAATCCTGAGTTAATGCTGCATGCTTTCAGTGTTTTGAGAACCTTCTATTGCCCATATCTGCAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016452.11 |
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| 3UTR-3UTR CAA 90 bp | GGAATGGCCAGGATGAAACACAGCAGCAATCATTTTGTTACAAATAACATCCTGACAGCAGCAATCATTTaGTTACAAATAACATCCTGG | + |
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Preference number: 3 (lower is better) Translates to: GMARMKHSSNHFVTNNILTAAII*LQITSW Trigger: CCAGGATGTTATTTGTAACAAAATGATTGCTGCTGT...CAGGATGTTATTTGTAACAAAATGATTGCTGCTGTGTTTCATCCTGGCCATTCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016452.11 ENSMUST00000200835.4 ENSMUST00000201068.4 |
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| CDS-3UTR CCA 90 bp | TTCTTCGCCAAATCAAATACAAGGGAAGGAATGGCCAGGATGAAACACAGCAGCTCCCGCTTGTTCTCCTaGTACAGCTGGGCAGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: FFAKSNTREGMARMKHSSSRLFS*YSWAAW Trigger: CCAGGCTGCCCAGCTGTACCAGGAGAACAAGCGGGA...GCTGCTGTGTTTCATCCTGGCCATTCCTTCCCTTGTATTTGATTTGGCGAAGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 |
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| CDS-3UTR CCA 90 bp | TTCTTCGCCAAATCAAATACAAGGGAAGGAATGGCCAGGATGAAACACAGCAGCTTCTCCTGGTACAGCTaGGCAGCCTGGCTGTTTGCT | + |
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Preference number: 4 (lower is better) Translates to: FFAKSNTREGMARMKHSSFSWYS*AAWLFA Trigger: AGCAAACAGCCAGGCTGCCCAGCTGTACCAGGAGAA...GCTGCTGTGTTTCATCCTGGCCATTCCTTCCCTTGTATTTGATTTGGCGAAGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 |
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| CDS-3UTR CCA 90 bp | ACAGTACATTGGATTTCAAATAATGTCTCTGATGCTCCACAGGAGGACAGAAAGTCCCGCTTGTTCTCCTaGTACAGCTGGGCAGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: TVHWISNNVSDAPQEDRKSRLFS*YSWAAW Trigger: CCAGGCTGCCCAGCTGTACCAGGAGAACAAGCGGGA...CTTTCTGTCCTCCTGTGGAGCATCAGAGACATTATTTGAAATCCAATGTACTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 ENSMUST00000202812.2 |
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| CDS-3UTR CCA 90 bp | CCAGGTACAGTACATTGGATTTCAAATAATGTCTCTGATGCTCCACAGGAGGACTACAGCTGGGCAGCCTaGCTGTTTGCTGGACTATTG | + |
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Preference number: 4 (lower is better) Translates to: PGTVHWISNNVSDAPQEDYSWAA*LFAGLL Trigger: CAATAGTCCAGCAAACAGCCAGGCTGCCCAGCTGTA...GTCCTCCTGTGGAGCATCAGAGACATTATTTGAAATCCAATGTACTGTACCTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 ENSMUST00000202812.2 |
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| CDS-3UTR CCA 90 bp | CAGGTACAGTACATTGGATTTCAAATAATGTCTCTGATGCTCCACAGGAGGACATTCTCCTGGTACAGCTaGGCAGCCTGGCTGTTTGCT | + |
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Preference number: 4 (lower is better) Translates to: QVQYIGFQIMSLMLHRRTFSWYS*AAWLFA Trigger: AGCAAACAGCCAGGCTGCCCAGCTGTACCAGGAGAA...TGTCCTCCTGTGGAGCATCAGAGACATTATTTGAAATCCAATGTACTGTACCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 ENSMUST00000202812.2 |
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| CDS-3UTR CCA 90 bp | TTGAGGCTGGAGATGAGATACAACAAAGGGACATATGCAATTGTAATGTTTGCATCCCGCTTGTTCTCCTaGTACAGCTGGGCAGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: LRLEMRYNKGTYAIVMFASRLFS*YSWAAW Trigger: CCAGGCTGCCCAGCTGTACCAGGAGAACAAGCGGGA...TGCAAACATTACAATTGCATATGTCCCTTTGTTGTATCTCATCTCCAGCCTCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 |
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| CDS-3UTR CCA 90 bp | ACAGTACATTGGATTTCAAATAATGTCTCTGATGCTCCACAGGAGGACAGAAAGTTCTCCTGGTACAGCTaGGCAGCCTGGCTGTTTGCT | + |
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Preference number: 4 (lower is better) Translates to: TVHWISNNVSDAPQEDRKFSWYS*AAWLFA Trigger: AGCAAACAGCCAGGCTGCCCAGCTGTACCAGGAGAA...CTTTCTGTCCTCCTGTGGAGCATCAGAGACATTATTTGAAATCCAATGTACTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 ENSMUST00000202812.2 |
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| CDS-3UTR CCA 90 bp | GTACAGTACATTGGATTTCAAATAATGTCTCTGATGCTCCACAGGAGGACAGAATACAGCTGGGCAGCCTaGCTGTTTGCTGGACTATTG | + |
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Preference number: 4 (lower is better) Translates to: VQYIGFQIMSLMLHRRTEYSWAA*LFAGLL Trigger: CAATAGTCCAGCAAACAGCCAGGCTGCCCAGCTGTA...TTCTGTCCTCCTGTGGAGCATCAGAGACATTATTTGAAATCCAATGTACTGTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 ENSMUST00000202812.2 |
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| 3UTR CAA 72 bp | CTTCTGCTCTACCCTGAGTCAACAGTCGCGCCAGCTTaGTTCTACTATTGCAGAAACACGCTTTTCATATTC | + |
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Preference number: 4 (lower is better) Translates to: LLLYPESTVAPA*FYYCRNTLFIF Trigger: GAATATGAAAAGCGTGTTTCTGCAATAGTAGAACAAAGCTGGCGCGACTGTTGACTCAGGGTAGAGCAGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200835.4 |
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| CDS-3UTR CCA 90 bp | CCTGATAACTGCTTTGAGGCTGGAGATGAGATACAACAAAGGGACATATGCAATAGCCTGGCTGTTTGCTaGACTATTGGGATTAGGTTC | + |
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Preference number: 4 (lower is better) Translates to: PDNCFEAGDEIQQRDICNSLAVC*TIGIRF Trigger: GAACCTAATCCCAATAGTCCAGCAAACAGCCAGGCT...ATTGCATATGTCCCTTTGTTGTATCTCATCTCCAGCCTCAAAGCAGTTATCAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 |
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| CDS-3UTR CCA 90 bp | CAGGTACAGTACATTGGATTTCAAATAATGTCTCTGATGCTCCACAGGAGGACAAGACACATCATAGGTTaGACTCCAACGGTTCTGAAG | + |
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Preference number: 4 (lower is better) Translates to: QVQYIGFQIMSLMLHRRTRHIIG*TPTVLK Trigger: CTTCAGAACCGTTGGAGTCCAACCTATGATGTGTCT...TGTCCTCCTGTGGAGCATCAGAGACATTATTTGAAATCCAATGTACTGTACCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 ENSMUST00000202812.2 |
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| CDS-3UTR CCA 90 bp | AATACATTCTTCGCCAAATCAAATACAAGGGAAGGAATGGCCAGGATGAAACACAGCCTGGCTGTTTGCTaGACTATTGGGATTAGGTTC | + |
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Preference number: 4 (lower is better) Translates to: NTFFAKSNTREGMARMKHSLAVC*TIGIRF Trigger: GAACCTAATCCCAATAGTCCAGCAAACAGCCAGGCT...GTGTTTCATCCTGGCCATTCCTTCCCTTGTATTTGATTTGGCGAAGAATGTATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 |
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| CDS-3UTR CCA 90 bp | AAAGGGACATATGCAATTGTAATGTTTGCAAGTAACCCAGGTACAGTACATTGGAGCCTGGCTGTTTGCTaGACTATTGGGATTAGGTTC | + |
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Preference number: 4 (lower is better) Translates to: KGTYAIVMFASNPGTVHWSLAVC*TIGIRF Trigger: GAACCTAATCCCAATAGTCCAGCAAACAGCCAGGCT...CCAATGTACTGTACCTGGGTTACTTGCAAACATTACAATTGCATATGTCCCTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 ENSMUST00000202812.2 |
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| CDS-3UTR CCA 90 bp | ATGTTCATATTGCTTACAAATGAGTATAGGGTTTTTCAGCTTTCCTTCCCCTTTTACAGCTGGGCAGCCTaGCTGTTTGCTGGACTATTG | + |
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Preference number: 4 (lower is better) Translates to: MFILLTNEYRVFQLSFPFYSWAA*LFAGLL Trigger: CAATAGTCCAGCAAACAGCCAGGCTGCCCAGCTGTA...AAAGGGGAAGGAAAGCTGAAAAACCCTATACTCATTTGTAAGCAATATGAACAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 |
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| CDS-3UTR TCA 90 bp | GTACAGTACATTGGATTTCAAATAATGTCTCTGATGCTCCACAGGAGGACAGAAGGACTCCAACGGTTCTaGAGTATATCCAGACATATA | + |
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Preference number: 4 (lower is better) Translates to: VQYIGFQIMSLMLHRRTEGLQRF*SISRHI Trigger: TATATGTCTGGATATACTTCAGAACCGTTGGAGTCC...TTCTGTCCTCCTGTGGAGCATCAGAGACATTATTTGAAATCCAATGTACTGTAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 ENSMUST00000202812.2 |
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| CDS-3UTR CCA 90 bp | TTTGAGGCTGGAGATGAGATACAACAAAGGGACATATGCAATTGTAATGTTTGCAGACACATCATAGGTTaGACTCCAACGGTTCTGAAG | + |
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Preference number: 4 (lower is better) Translates to: FEAGDEIQQRDICNCNVCRHIIG*TPTVLK Trigger: CTTCAGAACCGTTGGAGTCCAACCTATGATGTGTCT...GCAAACATTACAATTGCATATGTCCCTTTGTTGTATCTCATCTCCAGCCTCAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 |
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| CDS-3UTR TCA 90 bp | TTGAGGCTGGAGATGAGATACAACAAAGGGACATATGCAATTGTAATGTTTGCAGGACTCCAACGGTTCTaGAGTATATCCAGACATATA | + |
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Preference number: 4 (lower is better) Translates to: LRLEMRYNKGTYAIVMFAGLQRF*SISRHI Trigger: TATATGTCTGGATATACTTCAGAACCGTTGGAGTCC...TGCAAACATTACAATTGCATATGTCCCTTTGTTGTATCTCATCTCCAGCCTCAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 |
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| CDS-3UTR GCA 90 bp | CCAGGTACAGTACATTGGATTTCAAATAATGTCTCTGATGCTCCACAGGAGGACGCTTTGTTCTACTATTaGAGAAACACGCTTTTCATA | + |
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Preference number: 4 (lower is better) Translates to: PGTVHWISNNVSDAPQEDALFYY*RNTLFI Trigger: TATGAAAAGCGTGTTTCTGCAATAGTAGAACAAAGC...GTCCTCCTGTGGAGCATCAGAGACATTATTTGAAATCCAATGTACTGTACCTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 ENSMUST00000202812.2 |
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| CDS-3UTR CCA 90 bp | CAGGTACAGTACATTGGATTTCAAATAATGTCTCTGATGCTCCACAGGAGGACAGTATGGACGTTAAAATaGAAGACACATCATAGGTTG | + |
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Preference number: 4 (lower is better) Translates to: QVQYIGFQIMSLMLHRRTVWTLK*KTHHRL Trigger: CAACCTATGATGTGTCTTCCATTTTAACGTCCATAC...TGTCCTCCTGTGGAGCATCAGAGACATTATTTGAAATCCAATGTACTGTACCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 ENSMUST00000202812.2 |
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| CDS-3UTR TCA 90 bp | AGATACAACAAAGGGACATATGCAATTGTAATGTTTGCAAGTAACCCAGGTACAGGACTCCAACGGTTCTaGAGTATATCCAGACATATA | + |
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Preference number: 4 (lower is better) Translates to: RYNKGTYAIVMFASNPGTGLQRF*SISRHI Trigger: TATATGTCTGGATATACTTCAGAACCGTTGGAGTCC...TGTACCTGGGTTACTTGCAAACATTACAATTGCATATGTCCCTTTGTTGTATCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 |
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| CDS-3UTR GCA 90 bp | TTTGAGGCTGGAGATGAGATACAACAAAGGGACATATGCAATTGTAATGTTTGCACATATACTACCATCTaGATAGACATCCTCAAACGG | + |
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Preference number: 4 (lower is better) Translates to: FEAGDEIQQRDICNCNVCTYTTI*IDILKR Trigger: CCGTTTGAGGATGTCTATGCAGATGGTAGTATATGT...GCAAACATTACAATTGCATATGTCCCTTTGTTGTATCTCATCTCCAGCCTCAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000201068.4 |
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| CDS-3UTR CCA 90 bp | ATGTTCATATTGCTTACAAATGAGTATAGGGTTTTTCAGCTTTCCTTCCCCTTTAGACACATCATAGGTTaGACTCCAACGGTTCTGAAG | + |
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Preference number: 4 (lower is better) Translates to: MFILLTNEYRVFQLSFPFRHIIG*TPTVLK Trigger: CTTCAGAACCGTTGGAGTCCAACCTATGATGTGTCT...AAAGGGGAAGGAAAGCTGAAAAACCCTATACTCATTTGTAAGCAATATGAACAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 |
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| CDS-3UTR CCA 90 bp | ACCTCTATAAAAACCAACTCTGAAGGCCAGAATTCCGAAACAGAATGCGTTTACGTATGGACGTTAAAATaGAAGACACATCATAGGTTG | + |
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Preference number: 4 (lower is better) Translates to: TSIKTNSEGQNSETECVYVWTLK*KTHHRL Trigger: CAACCTATGATGTGTCTTCCATTTTAACGTCCATAC...GTAAACGCATTCTGTTTCGGAATTCTGGCCTTCAGAGTTGGTTTTTATAGAGGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 |
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| CDS-3UTR CCA 90 bp | AACCTGATAACTGCTTTGAGGCTGGAGATGAGATACAACAAAGGGACATATGCAATAGAGACGTTAGGATaGAACATCTTAGAGACAAAT | + |
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Preference number: 4 (lower is better) Translates to: NLITALRLEMRYNKGTYAIETLG*NILETN Trigger: ATTTGTCTCTAAGATGTTCCATCCTAACGTCTCTAT...TGCATATGTCCCTTTGTTGTATCTCATCTCCAGCCTCAAAGCAGTTATCAGGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200835.4 |
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| CDS-3UTR GCA 90 bp | TTGAGGCTGGAGATGAGATACAACAAAGGGACATATGCAATTGTAATGTTTGCAACATATACTACCATCTaGATAGACGTTAGGATGGAA | + |
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Preference number: 4 (lower is better) Translates to: LRLEMRYNKGTYAIVMFATYTTI*IDVRME Trigger: TTCCATCCTAACGTCTATGCAGATGGTAGTATATGT...TGCAAACATTACAATTGCATATGTCCCTTTGTTGTATCTCATCTCCAGCCTCAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016452.11 |
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| CDS-3UTR GCA 90 bp | AAAGGGACATATGCAATTGTAATGTTTGCAAGTAACCCAGGTACAGTACATTGGACATATACTACCATCTaGATAGACGTTAGGATGGAA | + |
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Preference number: 4 (lower is better) Translates to: KGTYAIVMFASNPGTVHWTYTTI*IDVRME Trigger: TTCCATCCTAACGTCTATGCAGATGGTAGTATATGT...CCAATGTACTGTACCTGGGTTACTTGCAAACATTACAATTGCATATGTCCCTTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016452.11 ENSMUST00000202812.2 |
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| CDS-3UTR GCA 90 bp | TTAGGGCAACACTGCTCCTTTAAGAGAATAGAGGATCTTCGGTTTTTCCTAACTGCTTTGTTCTACTATTaGAGAAACACGCTTTTCATA | + |
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Preference number: 4 (lower is better) Translates to: LGQHCSFKRIEDLRFFLTALFYY*RNTLFI Trigger: TATGAAAAGCGTGTTTCTGCAATAGTAGAACAAAGC...AGTTAGGAAAAACCGAAGATCCTCTATTCTCTTAAAGGAGCAGTGTTGCCCTAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 |
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| CDS-3UTR GCA 90 bp | GGAATGGCCAGGATGAAACACAGCAGCAATCATTTTGTTACAAATAACATCCTGGCTTTGTTCTACTATTaGAGAAACACGCTTTTCATA | + |
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Preference number: 4 (lower is better) Translates to: GMARMKHSSNHFVTNNILALFYY*RNTLFI Trigger: TATGAAAAGCGTGTTTCTGCAATAGTAGAACAAAGC...CAGGATGTTATTTGTAACAAAATGATTGCTGCTGTGTTTCATCCTGGCCATTCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 |
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| CDS CCA 90 bp | GCAGAAACACGCTTTTCATATTCCCGCTTGTTCTCCTGGTACAGCTaGGCAGCCTGGCTGTTTGCTGGACTATTGGGATTAGGTTCATCC | + |
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Preference number: 5 (lower is better) Translates to: AETRFSYSRLFSWYS*AAWLFAGLLGLGSS Trigger: GGATGAACCTAATCCCAATAGTCCAGCAAACAGCCAGGCTGCCCAGCTGTACCAGGAGAACAAGCGGGAATATGAAAAGCGTGTTTCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 ENSMUST00000201117.4 ENSMUST00000202812.2 ENSMUST00000202991.4 |
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| CDS CCA 90 bp | CGCTTTTCATATTCCCGCTTGTTCTCCTGGTACAGCTGGGCAGCCTaGCTGTTTGCTGGACTATTGGGATTAGGTTCATCCAATAGAGAC | + |
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Preference number: 5 (lower is better) Translates to: RFSYSRLFSWYSWAA*LFAGLLGLGSSNRD Trigger: GTCTCTATTGGATGAACCTAATCCCAATAGTCCAGCAAACAGCCAGGCTGCCCAGCTGTACCAGGAGAACAAGCGGGAATATGAAAAGCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 ENSMUST00000201117.4 ENSMUST00000202812.2 ENSMUST00000202991.4 |
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| CDS-3UTR CAA 90 bp | TTCTTCGCCAAATCAAATACAAGGGAAGGAATGGCCAGGATGAAACACAGCAGCTCTTCCTGTAACCTCTaGAAGTCCCTCATGAGGCGG | + |
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Preference number: 5 (lower is better) Translates to: FFAKSNTREGMARMKHSSSSCNL*KSLMRR Trigger: CCGCCTCATGAGGGACTTCAAGAGGTTACAGGAAGA...GCTGCTGTGTTTCATCCTGGCCATTCCTTCCCTTGTATTTGATTTGGCGAAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 |
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| CDS-3UTR CAA 90 bp | CAGGTACAGTACATTGGATTTCAAATAATGTCTCTGATGCTCCACAGGAGGACATTCCAAACCATTATGTaGTTCTCCGACGGAGCCCCG | + |
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Preference number: 5 (lower is better) Translates to: QVQYIGFQIMSLMLHRRTFQTIM*FSDGAP Trigger: CGGGGCTCCGTCGGAGAACAACATAATGGTTTGGAA...TGTCCTCCTGTGGAGCATCAGAGACATTATTTGAAATCCAATGTACTGTACCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016452.11 ENSMUST00000200835.4 ENSMUST00000201068.4 |
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| CDS-3UTR CAA 90 bp | TTCTTCGCCAAATCAAATACAAGGGAAGGAATGGCCAGGATGAAACACAGCAGCTTTTCATATTCCCGCTaGTTCTCCTGGTACAGCTGG | + |
|
Preference number: 5 (lower is better) Translates to: FFAKSNTREGMARMKHSSFSYSR*FSWYSW Trigger: CCAGCTGTACCAGGAGAACAAGCGGGAATATGAAAA...GCTGCTGTGTTTCATCCTGGCCATTCCTTCCCTTGTATTTGATTTGGCGAAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 |
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| CDS-3UTR CAA 90 bp | GTACAGTACATTGGATTTCAAATAATGTCTCTGATGCTCCACAGGAGGACAGAATCTTCCTGTAACCTCTaGAAGTCCCTCATGAGGCGG | + |
|
Preference number: 5 (lower is better) Translates to: VQYIGFQIMSLMLHRRTESSCNL*KSLMRR Trigger: CCGCCTCATGAGGGACTTCAAGAGGTTACAGGAAGA...TTCTGTCCTCCTGTGGAGCATCAGAGACATTATTTGAAATCCAATGTACTGTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000016452.11 ENSMUST00000200835.4 ENSMUST00000201068.4 |
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| CDS-3UTR CAA 90 bp | AGGGAAGGAATGGCCAGGATGAAACACAGCAGCAATCATTTTGTTACAAATAACTTCCAAACCATTATGTaGTTCTCCGACGGAGCCCCG | + |
|
Preference number: 5 (lower is better) Translates to: REGMARMKHSSNHFVTNNFQTIM*FSDGAP Trigger: CGGGGCTCCGTCGGAGAACAACATAATGGTTTGGAA...GTTATTTGTAACAAAATGATTGCTGCTGTGTTTCATCCTGGCCATTCCTTCCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000016452.11 ENSMUST00000200835.4 ENSMUST00000201068.4 |
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| CDS-3UTR CAA 90 bp | AGGGAAGGAATGGCCAGGATGAAACACAGCAGCAATCATTTTGTTACAAATAACACAGTCGCGCCAGCTTaGTTCTACTATTGCAGAAAC | + |
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Preference number: 5 (lower is better) Translates to: REGMARMKHSSNHFVTNNTVAPA*FYYCRN Trigger: GTTTCTGCAATAGTAGAACAAAGCTGGCGCGACTGT...GTTATTTGTAACAAAATGATTGCTGCTGTGTTTCATCCTGGCCATTCCTTCCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 |
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| CDS-3UTR CAA 90 bp | GGAATGGCCAGGATGAAACACAGCAGCAATCATTTTGTTACAAATAACATCCTGACAGTCGCGCCAGCTTaGTTCTACTATTGCAGAAAC | + |
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Preference number: 5 (lower is better) Translates to: GMARMKHSSNHFVTNNILTVAPA*FYYCRN Trigger: GTTTCTGCAATAGTAGAACAAAGCTGGCGCGACTGT...CAGGATGTTATTTGTAACAAAATGATTGCTGCTGTGTTTCATCCTGGCCATTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 |
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| CDS-3UTR CAA 90 bp | GTACAGTACATTGGATTTCAAATAATGTCTCTGATGCTCCACAGGAGGACAGAAACAGTCGCGCCAGCTTaGTTCTACTATTGCAGAAAC | + |
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Preference number: 5 (lower is better) Translates to: VQYIGFQIMSLMLHRRTETVAPA*FYYCRN Trigger: GTTTCTGCAATAGTAGAACAAAGCTGGCGCGACTGT...TTCTGTCCTCCTGTGGAGCATCAGAGACATTATTTGAAATCCAATGTACTGTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 ENSMUST00000202812.2 |
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| CDS-3UTR CAA 90 bp | ATGTTCATATTGCTTACAAATGAGTATAGGGTTTTTCAGCTTTCCTTCCCCTTTTCTTCCTGTAACCTCTaGAAGTCCCTCATGAGGCGG | + |
|
Preference number: 5 (lower is better) Translates to: MFILLTNEYRVFQLSFPFSSCNL*KSLMRR Trigger: CCGCCTCATGAGGGACTTCAAGAGGTTACAGGAAGA...AAAGGGGAAGGAAAGCTGAAAAACCCTATACTCATTTGTAAGCAATATGAACAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 |
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| CDS-3UTR CAA 90 bp | ACAGTACATTGGATTTCAAATAATGTCTCTGATGCTCCACAGGAGGACAGAAAGAAGACACATCATAGGTaGGACTCCAACGGTTCTGAA | + |
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Preference number: 5 (lower is better) Translates to: TVHWISNNVSDAPQEDRKKTHHR*DSNGSE Trigger: TTCAGAACCGTTGGAGTCCAACCTATGATGTGTCTT...CTTTCTGTCCTCCTGTGGAGCATCAGAGACATTATTTGAAATCCAATGTACTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 ENSMUST00000202812.2 |
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| CDS-3UTR CAA 90 bp | TTTGAGGCTGGAGATGAGATACAACAAAGGGACATATGCAATTGTAATGTTTGCTTTTCATATTCCCGCTaGTTCTCCTGGTACAGCTGG | + |
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Preference number: 5 (lower is better) Translates to: FEAGDEIQQRDICNCNVCFSYSR*FSWYSW Trigger: CCAGCTGTACCAGGAGAACAAGCGGGAATATGAAAA...GCAAACATTACAATTGCATATGTCCCTTTGTTGTATCTCATCTCCAGCCTCAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 |
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| CDS-3UTR CAA 90 bp | AAAGGGACATATGCAATTGTAATGTTTGCAAGTAACCCAGGTACAGTACATTGGTTTTCATATTCCCGCTaGTTCTCCTGGTACAGCTGG | + |
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Preference number: 5 (lower is better) Translates to: KGTYAIVMFASNPGTVHWFSYSR*FSWYSW Trigger: CCAGCTGTACCAGGAGAACAAGCGGGAATATGAAAA...CCAATGTACTGTACCTGGGTTACTTGCAAACATTACAATTGCATATGTCCCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 ENSMUST00000202812.2 |
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| CDS-3UTR CAA 90 bp | TTCTTCGCCAAATCAAATACAAGGGAAGGAATGGCCAGGATGAAACACAGCAGCAGCTTTGTTCTACTATaGCAGAAACACGCTTTTCAT | + |
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Preference number: 5 (lower is better) Translates to: FFAKSNTREGMARMKHSSSFVLL*QKHAFH Trigger: ATGAAAAGCGTGTTTCTGCAATAGTAGAACAAAGCT...GCTGCTGTGTTTCATCCTGGCCATTCCTTCCCTTGTATTTGATTTGGCGAAGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 |
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| CDS-3UTR CAA 90 bp | AAAGGGACATATGCAATTGTAATGTTTGCAAGTAACCCAGGTACAGTACATTGGAAGACACATCATAGGTaGGACTCCAACGGTTCTGAA | + |
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Preference number: 5 (lower is better) Translates to: KGTYAIVMFASNPGTVHWKTHHR*DSNGSE Trigger: TTCAGAACCGTTGGAGTCCAACCTATGATGTGTCTT...CCAATGTACTGTACCTGGGTTACTTGCAAACATTACAATTGCATATGTCCCTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 ENSMUST00000202812.2 |
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| CDS-3UTR CAA 90 bp | TTAGGGCAACACTGCTCCTTTAAGAGAATAGAGGATCTTCGGTTTTTCCTAACTCTGTTTGCTGGACTATaGGGATTAGGTTCATCCAAT | + |
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Preference number: 5 (lower is better) Translates to: LGQHCSFKRIEDLRFFLTLFAGL*GLGSSN Trigger: ATTGGATGAACCTAATCCCAATAGTCCAGCAAACAG...AGTTAGGAAAAACCGAAGATCCTCTATTCTCTTAAAGGAGCAGTGTTGCCCTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 |
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| CDS-3UTR CAA 90 bp | AAAGGGACATATGCAATTGTAATGTTTGCAAGTAACCCAGGTACAGTACATTGGCTGTTTGCTGGACTATaGGGATTAGGTTCATCCAAT | + |
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Preference number: 5 (lower is better) Translates to: KGTYAIVMFASNPGTVHWLFAGL*GLGSSN Trigger: ATTGGATGAACCTAATCCCAATAGTCCAGCAAACAG...CCAATGTACTGTACCTGGGTTACTTGCAAACATTACAATTGCATATGTCCCTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 ENSMUST00000202812.2 |
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| CDS-3UTR CAA 90 bp | TGTTCATATTGCTTACAAATGAGTATAGGGTTTTTCAGCTTTCCTTCCCCTTTCCTGTTTGCTGGACTATaGGGATTAGGTTCATCCAAT | + |
|
Preference number: 5 (lower is better) Translates to: CSYCLQMSIGFFSFPSPFLFAGL*GLGSSN Trigger: ATTGGATGAACCTAATCCCAATAGTCCAGCAAACAG...GAAAGGGGAAGGAAAGCTGAAAAACCCTATACTCATTTGTAAGCAATATGAACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 |
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| CDS-3UTR CAA 90 bp | AGGATGAAACACAGCAGCAATCATTTTGTTACAAATAACATCCTGGTCACCAGAAGCTTTGTTCTACTATaGCAGAAACACGCTTTTCAT | + |
|
Preference number: 5 (lower is better) Translates to: RMKHSSNHFVTNNILVTRSFVLL*QKHAFH Trigger: ATGAAAAGCGTGTTTCTGCAATAGTAGAACAAAGCT...TCTGGTGACCAGGATGTTATTTGTAACAAAATGATTGCTGCTGTGTTTCATCCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 |
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| CDS-3UTR CAA 90 bp | AAAGGGACATATGCAATTGTAATGTTTGCAAGTAACCCAGGTACAGTACATTGGAGCTTTGTTCTACTATaGCAGAAACACGCTTTTCAT | + |
|
Preference number: 5 (lower is better) Translates to: KGTYAIVMFASNPGTVHWSFVLL*QKHAFH Trigger: ATGAAAAGCGTGTTTCTGCAATAGTAGAACAAAGCT...CCAATGTACTGTACCTGGGTTACTTGCAAACATTACAATTGCATATGTCCCTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 ENSMUST00000202812.2 |
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| CDS CCA 90 bp | AGAGACGTTAGGATGGAACATCTTAGAGACAAATCTAACAGTAGGTaGCTTATTAGGATACTCTTCAGTGAATTCAATTGTAAGCTTAAA | + |
|
Preference number: 5 (lower is better) Translates to: RDVRMEHLRDKSNSR*LIRILFSEFNCKLK Trigger: TTTAAGCTTACAATTGAATTCACTGAAGAGTATCCTAATAAGCCACCTACTGTTAGATTTGTCTCTAAGATGTTCCATCCTAACGTCTCT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200835.4 |
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| CDS CCA 90 bp | ACCATCGTTAGGATGGAACATCTTAGAGACAAATCTAACAGTAGGTaGCTTATTAGGATACTCTTCAGTGAATTCAATTGTAAGCTTAAA | + |
|
Preference number: 5 (lower is better) Translates to: TIVRMEHLRDKSNSR*LIRILFSEFNCKLK Trigger: TTTAAGCTTACAATTGAATTCACTGAAGAGTATCCTAATAAGCCACCTACTGTTAGATTTGTCTCTAAGATGTTCCATCCTAACGATGGT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202991.4 |
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| CDS CAA 72 bp | CCGCTCACTCCGGCCGGAGGATCTTCCTGTAACCTCTaGAAGTCCCTCATGAGGCGGCGCCGGGCCGGGGTC | + |
|
Preference number: 6 (lower is better) Translates to: PLTPAGGSSCNL*KSLMRRRRAGV Trigger: GACCCCGGCCCGGCGCCGCCTCATGAGGGACTTCAAGAGGTTACAGGAAGATCCTCCGGCCGGAGTGAGCGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000016452.11 ENSMUST00000200835.4 ENSMUST00000201068.4 ENSMUST00000202991.4 |
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| CDS CCA 72 bp | TATTCCCGCTTGTTCTCCTGGTACAGCTGGGCAGCCTaGCTGTTTGCTGGACTATTGGGATTAGGTTCATCC | + |
|
Preference number: 6 (lower is better) Translates to: YSRLFSWYSWAA*LFAGLLGLGSS Trigger: GGATGAACCTAATCCCAATAGTCCAGCAAACAGCCAGGCTGCCCAGCTGTACCAGGAGAACAAGCGGGAATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 ENSMUST00000201117.4 ENSMUST00000202812.2 ENSMUST00000202991.4 |
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| CDS CAA 72 bp | TGGTACAGCTGGGCAGCCTGGCTGTTTGCTGGACTATaGGGATTAGGTTCATCCAATAGAGACTGTATGGAC | + |
|
Preference number: 6 (lower is better) Translates to: WYSWAAWLFAGL*GLGSSNRDCMD Trigger: GTCCATACAGTCTCTATTGGATGAACCTAATCCCAATAGTCCAGCAAACAGCCAGGCTGCCCAGCTGTACCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 ENSMUST00000201117.4 ENSMUST00000202812.2 ENSMUST00000202991.4 |
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| CDS CAA 90 bp | TTGTTCTCCTGGTACAGCTGGGCAGCCTGGCTGTTTGCTGGACTATaGGGATTAGGTTCATCCAATAGAGACTGTATGGACGTTAAAATG | + |
|
Preference number: 6 (lower is better) Translates to: LFSWYSWAAWLFAGL*GLGSSNRDCMDVKM Trigger: CATTTTAACGTCCATACAGTCTCTATTGGATGAACCTAATCCCAATAGTCCAGCAAACAGCCAGGCTGCCCAGCTGTACCAGGAGAACAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 ENSMUST00000201117.4 ENSMUST00000202812.2 ENSMUST00000202991.4 |
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| CDS CAA 90 bp | CCAATAGAGACTGTATGGACGTTAAAATGGAAGACACATCATAGGTaGGACTCCAACGGTTCTGAAGTATATCCAGACATATACTACCAT | + |
|
Preference number: 6 (lower is better) Translates to: PIETVWTLKWKTHHR*DSNGSEVYPDIYYH Trigger: ATGGTAGTATATGTCTGGATATACTTCAGAACCGTTGGAGTCCAACCTATGATGTGTCTTCCATTTTAACGTCCATACAGTCTCTATTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 ENSMUST00000201117.4 ENSMUST00000202812.2 ENSMUST00000202991.4 |
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| CDS CAA 72 bp | ACTGTATGGACGTTAAAATGGAAGACACATCATAGGTaGGACTCCAACGGTTCTGAAGTATATCCAGACATA | + |
|
Preference number: 6 (lower is better) Translates to: TVWTLKWKTHHR*DSNGSEVYPDI Trigger: TATGTCTGGATATACTTCAGAACCGTTGGAGTCCAACCTATGATGTGTCTTCCATTTTAACGTCCATACAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000016452.11 ENSMUST00000201068.4 ENSMUST00000201117.4 ENSMUST00000202812.2 ENSMUST00000202991.4 |
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| CDS CCA 72 bp | AGGATGGAACATCTTAGAGACAAATCTAACAGTAGGTaGCTTATTAGGATACTCTTCAGTGAATTCAATTGT | + |
|
Preference number: 6 (lower is better) Translates to: RMEHLRDKSNSR*LIRILFSEFNC Trigger: ACAATTGAATTCACTGAAGAGTATCCTAATAAGCCACCTACTGTTAGATTTGTCTCTAAGATGTTCCATCCT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000016452.11 ENSMUST00000200835.4 ENSMUST00000201117.4 ENSMUST00000202812.2 ENSMUST00000202991.4 |
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