Pregenerated sensors for UBD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035186Ensembl transcript IDs: ENSMUST00000038844.7
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCCCCTGCATCCCAAGTCCTGGAATTAAGTTTGCACCACCACACCTaGCTAAAGGTTCAGCTTTTGCCCTCATCAACAACCCTGCGAATG | + |
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Preference number: 1 (lower is better) Translates to: SPASQVLELSLHHHT*LKVQLLPSSTTLRM Trigger: CATTCGCAGGGTTGTTGATGAGGGCAAAAGCTGAACCTTTAGTCAGGTGTGGTGGTGCAAACTTAATTCCAGGACTTGGGATGCAGGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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| 3UTR-3UTR TCA 90 bp | TTTGCACCACCACACCTGACTAAAGGTTCAGCTTTTGCCCTCATCAACAACCCTAGAGGAAATCGGCTTTaGGCTTCTCATCACCGCATC | + |
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Preference number: 2 (lower is better) Translates to: FAPPHLTKGSAFALINNPRGNRL*ASHHRI Trigger: GATGCGGTGATGAGAAGCTCAAAGCCGATTTCCTCT...AGGGTTGTTGATGAGGGCAAAAGCTGAACCTTTAGTCAGGTGTGGTGGTGCAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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| 3UTR-3UTR TCA 90 bp | CCCTGCATCCCAAGTCCTGGAATTAAGTTTGCACCACCACACCTGACTAAAGGTTATCATCAAGAGATGTaGTTGGTAATAGCTCAGAGG | + |
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Preference number: 2 (lower is better) Translates to: PCIPSPGIKFAPPHLTKGYHQEM*LVIAQR Trigger: CCTCTGAGCTATTACCAATCACATCTCTTGATGATA...ACCTTTAGTCAGGTGTGGTGGTGCAAACTTAATTCCAGGACTTGGGATGCAGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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| 3UTR-3UTR CAA 90 bp | ACCTTCCCCTGCATCCCAAGTCCTGGAATTAAGTTTGCACCACCACACCTGACTCAGAGGAAATCGGCTTaGAGCTTCTCATCACCGCAT | + |
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Preference number: 3 (lower is better) Translates to: TFPCIPSPGIKFAPPHLTQRKSA*SFSSPH Trigger: ATGCGGTGATGAGAAGCTCAAAGCCGATTTCCTCTG...AGTCAGGTGTGGTGGTGCAAACTTAATTCCAGGACTTGGGATGCAGGGGAAGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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| 3UTR TCA 72 bp | TCCCAAGTCCTGGAATTAAGTTTGCACCACCACACCTaGCTAAAGGTTCAGCTTTTGCCCTCATCAACAACC | + |
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Preference number: 3 (lower is better) Translates to: SQVLELSLHHHT*LKVQLLPSSTT Trigger: GGTTGTTGATGAGGGCAAAAGCTGAACCTTTAGTCAGGTGTGGTGGTGCAAACTTAATTCCAGGACTTGGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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| 3UTR TCA 72 bp | AGGTTCAGCTTTTGCCCTCATCAACAACCCTGCGAATaGACTATGTTAGAAACAAGATTCACAGACTTGACA | + |
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Preference number: 3 (lower is better) Translates to: RFSFCPHQQPCE*TMLETRFTDLT Trigger: TGTCAAGTCTGTGAATCTTGTTTCTAACATAGTTCATTCGCAGGGTTGTTGATGAGGGCAAAAGCTGAACCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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| CDS-3UTR CCA 90 bp | AGTCCTGGAATTAAGTTTGCACCACCACACCTGACTAAAGGTTCAGCTTTTGCCCCTGGGCCACTGAGCTaGATCTTCGAACTCGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: SPGIKFAPPHLTKGSAFAPGPLS*IFELGG Trigger: TCCTCCGAGTTCGAAGATCCAGCTCAGTGGCCCAGG...GGCAAAAGCTGAACCTTTAGTCAGGTGTGGTGGTGCAAACTTAATTCCAGGACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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| CDS-3UTR CCA 90 bp | CCCTGCATCCCAAGTCCTGGAATTAAGTTTGCACCACCACACCTGACTAAAGGTTCTAGCAGAAGGATCTaGTCCTGTACAGAGACCTTG | + |
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Preference number: 4 (lower is better) Translates to: PCIPSPGIKFAPPHLTKGSSRRI*SCTETL Trigger: CAAGGTCTCTGTACAGGACCAGATCCTTCTGCTAGA...ACCTTTAGTCAGGTGTGGTGGTGCAAACTTAATTCCAGGACTTGGGATGCAGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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| CDS-3UTR CCA 90 bp | AATTTGGTTCAACAATCATTCATTGATCCACCTTCCCCTGCATCCCAAGTCCTGGCAGCTCTTCATCACTaGGCTTCACCACCTTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: NLVQQSFIDPPSPASQVLAALHH*ASPPSG Trigger: CCCTGAAGGTGGTGAAGCCCAGTGATGAAGAGCTGC...CAGGACTTGGGATGCAGGGGAAGGTGGATCAATGAATGATTGTTGAACCAAATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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| CDS-3UTR CCA 90 bp | AGTCCTGGAATTAAGTTTGCACCACCACACCTGACTAAAGGTTCAGCTTTTGCCATCATCTCTTTCACCTaGGCCACTGAGCTGGATCTT | + |
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Preference number: 4 (lower is better) Translates to: SPGIKFAPPHLTKGSAFAIISFT*ATELDL Trigger: AAGATCCAGCTCAGTGGCCCAGGTGAAAGAGATGAT...GGCAAAAGCTGAACCTTTAGTCAGGTGTGGTGGTGCAAACTTAATTCCAGGACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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| CDS-3UTR GCA 90 bp | AGTCCTGGAATTAAGTTTGCACCACCACACCTGACTAAAGGTTCAGCTTTTGCCCCAGCTTCTTTCCGTTaGAATTCACAACCTGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: SPGIKFAPPHLTKGSAFAPASFR*NSQPAS Trigger: AGAAGCAGGTTGTGAATTGCAACGGAAAGAAGCTGG...GGCAAAAGCTGAACCTTTAGTCAGGTGTGGTGGTGCAAACTTAATTCCAGGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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| CDS-3UTR CCA 90 bp | CCCTGCATCCCAAGTCCTGGAATTAAGTTTGCACCACCACACCTGACTAAAGGTCTTTGTCATTCTCAGTaGTCTCAAAGGTCATTAACC | + |
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Preference number: 4 (lower is better) Translates to: PCIPSPGIKFAPPHLTKGLCHSQ*SQRSLT Trigger: GGTTAATGACCTTTGAGACCACTGAGAATGACAAAG...ACCTTTAGTCAGGTGTGGTGGTGCAAACTTAATTCCAGGACTTGGGATGCAGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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| CDS-3UTR CCA 90 bp | AGTCCTGGAATTAAGTTTGCACCACCACACCTGACTAAAGGTTCAGCTTTTGCCACCTTCAGGGTAAGGTaGATAGTGGTTTCCTTGTCA | + |
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Preference number: 4 (lower is better) Translates to: SPGIKFAPPHLTKGSAFATFRVR*IVVSLS Trigger: TGACAAGGAAACCACTATCCACCTTACCCTGAAGGT...GGCAAAAGCTGAACCTTTAGTCAGGTGTGGTGGTGCAAACTTAATTCCAGGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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| CDS-3UTR GCA 90 bp | ATTTGGTTCAACAATCATTCATTGATCCACCTTCCCCTGCATCCCAAGTCCTGGTTGCAATTCACAACCTaGTTCTTAGGGATCACAGAG | + |
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Preference number: 4 (lower is better) Translates to: IWFNNHSLIHLPLHPKSWLQFTT*FLGITE Trigger: CTCTGTGATCCCTAAGAAGCAGGTTGTGAATTGCAA...CCAGGACTTGGGATGCAGGGGAAGGTGGATCAATGAATGATTGTTGAACCAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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| CDS-3UTR CCA 90 bp | AGTCCTGGAATTAAGTTTGCACCACCACACCTGACTAAAGGTTCAGCTTTTGCCACAGAGACCTTGGTTTaGGACCTAATATGTTCATTT | + |
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Preference number: 4 (lower is better) Translates to: SPGIKFAPPHLTKGSAFATETLV*DLICSF Trigger: AAATGAACATATTAGGTCCCAAACCAAGGTCTCTGT...GGCAAAAGCTGAACCTTTAGTCAGGTGTGGTGGTGCAAACTTAATTCCAGGACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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| CDS TCA 90 bp | GATCACAGAGGTCACACTCTCGATCATCTCTTTCACCTGGGCCACTaGGCTGGATCTTCGAACTCGGAGGAGGTGCCTTTGCCCCTCGTT | + |
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Preference number: 5 (lower is better) Translates to: DHRGHTLDHLFHLGH*AGSSNSEEVPLPLV Trigger: AACGAGGGGCAAAGGCACCTCCTCCGAGTTCGAAGATCCAGCTCAGTGGCCCAGGTGAAAGAGATGATCGAGAGTGTGACCTCTGTGATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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| CDS CCA 90 bp | CAGAGGTCACACTCTCGATCATCTCTTTCACCTGGGCCACTGAGCTaGATCTTCGAACTCGGAGGAGGTGCCTTTGCCCCTCGTTTTTGG | + |
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Preference number: 5 (lower is better) Translates to: QRSHSRSSLSPGPLS*IFELGGGAFAPRFW Trigger: CCAAAAACGAGGGGCAAAGGCACCTCCTCCGAGTTCGAAGATCCAGCTCAGTGGCCCAGGTGAAAGAGATGATCGAGAGTGTGACCTCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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| CDS CCA 90 bp | TTCTTAGGGATCACAGAGGTCACACTCTCGATCATCTCTTTCACCTaGGCCACTGAGCTGGATCTTCGAACTCGGAGGAGGTGCCTTTGC | + |
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Preference number: 5 (lower is better) Translates to: FLGITEVTLSIISFT*ATELDLRTRRRCLC Trigger: GCAAAGGCACCTCCTCCGAGTTCGAAGATCCAGCTCAGTGGCCCAGGTGAAAGAGATGATCGAGAGTGTGACCTCTGTGATCCCTAAGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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| CDS-3UTR CAA 90 bp | AATTTGGTTCAACAATCATTCATTGATCCACCTTCCCCTGCATCCCAAGTCCTGTCGGAGGAGGTGCCTTaGCCCCTCGTTTTTGGACTC | + |
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Preference number: 5 (lower is better) Translates to: NLVQQSFIDPPSPASQVLSEEVP*PLVFGL Trigger: GAGTCCAAAAACGAGGGGCAAAGGCACCTCCTCCGA...CAGGACTTGGGATGCAGGGGAAGGTGGATCAATGAATGATTGTTGAACCAAATT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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| CDS-3UTR CAA 90 bp | AGTCCTGGAATTAAGTTTGCACCACCACACCTGACTAAAGGTTCAGCTTTTGCCCCCCAGTGCAGTGTGTaGTCAGAAAGAGCAAACTGC | + |
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Preference number: 5 (lower is better) Translates to: SPGIKFAPPHLTKGSAFAPQCSV*SERANC Trigger: GCAGTTTGCTCTTTCTGACAACACACTGCACTGGGG...GGCAAAAGCTGAACCTTTAGTCAGGTGTGGTGGTGCAAACTTAATTCCAGGACT 49% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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| CDS-3UTR CAA 90 bp | ATTTGGTTCAACAATCATTCATTGATCCACCTTCCCCTGCATCCCAAGTCCTGGTCCAGCTTCTTTCCGTaGCAATTCACAACCTGCTTC | + |
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Preference number: 5 (lower is better) Translates to: IWFNNHSLIHLPLHPKSWSSFFP*QFTTCF Trigger: GAAGCAGGTTGTGAATTGCAACGGAAAGAAGCTGGA...CCAGGACTTGGGATGCAGGGGAAGGTGGATCAATGAATGATTGTTGAACCAAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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| CDS-3UTR CAA 90 bp | AATTTGGTTCAACAATCATTCATTGATCCACCTTCCCCTGCATCCCAAGTCCTGTACAGAGACCTTGGTTaGGGACCTAATATGTTCATT | + |
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Preference number: 5 (lower is better) Translates to: NLVQQSFIDPPSPASQVLYRDLG*GPNMFI Trigger: AATGAACATATTAGGTCCCAAACCAAGGTCTCTGTA...CAGGACTTGGGATGCAGGGGAAGGTGGATCAATGAATGATTGTTGAACCAAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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| CDS CCA 90 bp | TTGGAGTCTAGCAGAAGGATCTGGTCCTGTACAGAGACCTTGGTTTaGGACCTAATATGTTCATTTATCTTCTTCACTTTGTCATTCTCA | + |
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Preference number: 5 (lower is better) Translates to: LESSRRIWSCTETLV*DLICSFIFFTLSFS Trigger: TGAGAATGACAAAGTGAAGAAGATAAATGAACATATTAGGTCCCAAACCAAGGTCTCTGTACAGGACCAGATCCTTCTGCTAGACTCCAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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| CDS-3UTR CAA 90 bp | TCATCAACAACCCTGCGAATGAACTATGTTAGAAACAAGATTCACAGACTTGACTCCTGTACAGAGACCTaGGTTTGGGACCTAATATGT | + |
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Preference number: 5 (lower is better) Translates to: SSTTLRMNYVRNKIHRLDSCTET*VWDLIC Trigger: ACATATTAGGTCCCAAACCAAGGTCTCTGTACAGGA...GTCAAGTCTGTGAATCTTGTTTCTAACATAGTTCATTCGCAGGGTTGTTGATGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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| CDS-3UTR CAA 90 bp | TCATCAACAACCCTGCGAATGAACTATGTTAGAAACAAGATTCACAGACTTGACTTTATCTTCTTCACTTaGTCATTCTCAGTGGTCTCA | + |
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Preference number: 5 (lower is better) Translates to: SSTTLRMNYVRNKIHRLDFIFFT*SFSVVS Trigger: TGAGACCACTGAGAATGACAAAGTGAAGAAGATAAA...GTCAAGTCTGTGAATCTTGTTTCTAACATAGTTCATTCGCAGGGTTGTTGATGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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| CDS CCA 72 bp | CACTCTCGATCATCTCTTTCACCTGGGCCACTGAGCTaGATCTTCGAACTCGGAGGAGGTGCCTTTGCCCCT | + |
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Preference number: 6 (lower is better) Translates to: HSRSSLSPGPLS*IFELGGGAFAP Trigger: AGGGGCAAAGGCACCTCCTCCGAGTTCGAAGATCCAGCTCAGTGGCCCAGGTGAAAGAGATGATCGAGAGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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| CDS TCA 72 bp | GGTCACACTCTCGATCATCTCTTTCACCTGGGCCACTaGGCTGGATCTTCGAACTCGGAGGAGGTGCCTTTG | + |
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Preference number: 6 (lower is better) Translates to: GHTLDHLFHLGH*AGSSNSEEVPL Trigger: CAAAGGCACCTCCTCCGAGTTCGAAGATCCAGCTCAGTGGCCCAGGTGAAAGAGATGATCGAGAGTGTGACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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| CDS CCA 72 bp | ATCACAGAGGTCACACTCTCGATCATCTCTTTCACCTaGGCCACTGAGCTGGATCTTCGAACTCGGAGGAGG | + |
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Preference number: 6 (lower is better) Translates to: ITEVTLSIISFT*ATELDLRTRRR Trigger: CCTCCTCCGAGTTCGAAGATCCAGCTCAGTGGCCCAGGTGAAAGAGATGATCGAGAGTGTGACCTCTGTGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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| CDS CCA 72 bp | TCATTCTCAGTGGTCTCAAAGGTCATTAACCGCCATTaGTCTGAACGGACAACACAGGTGCGGACAGAAGCC | + |
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Preference number: 6 (lower is better) Translates to: SFSVVSKVINRH*SERTTQVRTEA Trigger: GGCTTCTGTCCGCACCTGTGTTGTCCGTTCAGACCAATGGCGGTTAATGACCTTTGAGACCACTGAGAATGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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| CDS CCA 72 bp | TGGGGCTTGAGGATTTTGGAGTCTAGCAGAAGGATCTaGTCCTGTACAGAGACCTTGGTTTGGGACCTAATA | + |
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Preference number: 6 (lower is better) Translates to: WGLRILESSRRI*SCTETLVWDLI Trigger: TATTAGGTCCCAAACCAAGGTCTCTGTACAGGACCAGATCCTTCTGCTAGACTCCAAAATCCTCAAGCCCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038844.7 |
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