RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for UBAP2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028433

Ensembl transcript IDs: ENSMUST00000030143.13, ENSMUST00000108068.8, ENSMUST00000134782.2, ENSMUST00000135323.2, ENSMUST00000136057.2

Found 405 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTaGGCAGACGGACAGGCTTCTGCTGTGCGCAGACGGACAGGCTTC +
Preference number: 1 (lower is better)
Translates to: TSPQSRTRPKAEALL*ADGQASAVRRRTGF
Trigger: GAAGCCTGTCCGTCTGCGCACAGCAGAAGCCTGTCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR CCA 90 bp CCAAACCACCAGTCCTTCAGTGGCACACCCAGCAGCCCACTGAGCTaGGGCCACATGGAAGATCTGAAGGCAGAGGGGTCGGAGTGGGGC +
Preference number: 1 (lower is better)
Translates to: PNHQSFSGTPSSPLS*GHMEDLKAEGSEWG
Trigger: GCCCCACTCCGACCCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGGTGTGCCACTGAAGGACTGGTGGTTTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR GCA 90 bp CCAAAGCGGAAGCCCTGCTGTGCGCAGACGGACAGGCTTCTGCTGTaGGCAGACGGACAGGCTTCTGCTGGACAGGGGTTATTTCTTCTG +
Preference number: 1 (lower is better)
Translates to: PKRKPCCAQTDRLLL*ADGQASAGQGLFLL
Trigger: CAGAAGAAATAACCCCTGTCCAGCAGAAGCCTGTCCGTCTGCGCACAGCAGAAGCCTGTCCGTCTGCGCACAGCAGGGCTTCCGCTTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR CCA 90 bp CTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGGTCGGAGTaGGGCCTACTTGGCTATGGTAAGGGTGTCTGGACTGGGAGCACA +
Preference number: 1 (lower is better)
Translates to: LSWGHMEDLKAEGSE*GLLGYGKGVWTGST
Trigger: TGTGCTCCCAGTCCAGACACCCTTACCATAGCCAAGTAGGCCCCACTCCGACCCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR CCA 90 bp TTCACAGGGAATGAGATAAGTCGTGATTCTTCATTGGTACTGACCTaGCCCCAAACCACCAGTCCTTCAGTGGCACACCCAGCAGCCCAC +
Preference number: 1 (lower is better)
Translates to: FTGNEISRDSSLVLT*PQTTSPSVAHPAAH
Trigger: GTGGGCTGCTGGGTGTGCCACTGAAGGACTGGTGGTTTGGGGCCAGGTCAGTACCAATGAAGAATCACGACTTATCTCATTCCCTGTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR CCA 90 bp GTGAGAGAAAACCCTGAAACAGCTGTCCACCTGGCTCAGGACAACTaGGATGGGGGAGCCTTTGATTGCAGACAGGCTTTCACTGAGATG +
Preference number: 1 (lower is better)
Translates to: VRENPETAVHLAQDN*DGGAFDCRQAFTEM
Trigger: CATCTCAGTGAAAGCCTGTCTGCAATCAAAGGCTCCCCCATCCCAGTTGTCCTGAGCCAGGTGGACAGCTGTTTCAGGGTTTTCTCTCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR GCA 90 bp GGATGGAAGCAGATCTTTGATTTCTTTATAAGGGAGCTGACTGGCTaGACATCTCTGAGACCTAGTGCAGATTTTGTTTTTAAATGTTGG +
Preference number: 1 (lower is better)
Translates to: GWKQIFDFFIRELTG*TSLRPSADFVFKCW
Trigger: CCAACATTTAAAAACAAAATCTGCACTAGGTCTCAGAGATGTGCAGCCAGTCAGCTCCCTTATAAAGAAATCAAAGATCTGCTTCCATCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR-3UTR TCA 90 bp GTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGACCACCCAGCAGCCCACTaGGCTGGGGCCACATGGAAG +
Preference number: 2 (lower is better)
Translates to: VPRAGPDPKRKPCCAQTDHPAAH*AGATWK
Trigger: CTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGGTG...GTCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR-3UTR GCA 90 bp CCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGGTCGGGGGCTCCAGGAAGGTaGTCCATGTGTTCCCTCCTG +
Preference number: 2 (lower is better)
Translates to: PSSPLSWGHMEDLKAEGSGAPGR*SMCSLL
Trigger: CAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCC...CGACCCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR-3UTR CCA 90 bp CCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGGTCGACACAGCAGAGGGTCTaGGAGGCAGGCTTCCCACAG +
Preference number: 2 (lower is better)
Translates to: PSSPLSWGHMEDLKAEGSTQQRV*EAGFPQ
Trigger: CTGTGGGAAGCCTGCCTCCCAGACCCTCTGCTGTGT...CGACCCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR-3UTR CCA 90 bp CAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGACAGGCTGCAGAGGGGTCGGAGTaGGGCCTACTTGGCTATGGT +
Preference number: 2 (lower is better)
Translates to: QSRTRPKAEALLCADGQAAEGSE*GLLGYG
Trigger: ACCATAGCCAAGTAGGCCCCACTCCGACCCCTCTGC...AGCCTGTCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR-3UTR GCA 90 bp GAGAAAACCCTGAAACAGCTGTCCACCTGGCTCAGGACAACTGGGATGGGGGAGGCGGAAGCCCTGCTGTaGGCAGACGGACAGGCTTCT +
Preference number: 2 (lower is better)
Translates to: EKTLKQLSTWLRTTGMGEAEALL*ADGQAS
Trigger: AGAAGCCTGTCCGTCTGCGCACAGCAGGGCTTCCGC...CTCCCCCATCCCAGTTGTCCTGAGCCAGGTGGACAGCTGTTTCAGGGTTTTCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR-3UTR TCA 90 bp AAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGATTCTTCATTGGTACTaGCCTGGCCCCAAACCACCA +
Preference number: 2 (lower is better)
Translates to: KSPEQDQTQSGSPAVRRRILHWY*PGPKPP
Trigger: TGGTGGTTTGGGGCCAGGTCAGTACCAATGAAGAAT...CCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR-3UTR TCA 90 bp GAGAAAACCCTGAAACAGCTGTCCACCTGGCTCAGGACAACTGGGATGGGGGAGGCCACATGGAAGATCTaGAGGCAGAGGGGTCGGAGT +
Preference number: 2 (lower is better)
Translates to: EKTLKQLSTWLRTTGMGEATWKI*RQRGRS
Trigger: ACTCCGACCCCTCTGCCTTCAGATCTTCCATGTGGC...CTCCCCCATCCCAGTTGTCCTGAGCCAGGTGGACAGCTGTTTCAGGGTTTTCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR-3UTR CCA 90 bp AGTGGGGCCTACTTGGCTATGGTAAGGGTGTCTGGACTGGGAGCACACACTTGTACACAGCAGAGGGTCTaGGAGGCAGGCTTCCCACAG +
Preference number: 2 (lower is better)
Translates to: SGAYLAMVRVSGLGAHTCTQQRV*EAGFPQ
Trigger: CTGTGGGAAGCCTGCCTCCCAGACCCTCTGCTGTGT...ACAAGTGTGTGCTCCCAGTCCAGACACCCTTACCATAGCCAAGTAGGCCCCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR-3UTR TCA 90 bp TTATTAGGTGGAGTTTGGGTGAGAGAAAACCCTGAAACAGCTGTCCACCTGGCTGCCACATGGAAGATCTaGAGGCAGAGGGGTCGGAGT +
Preference number: 2 (lower is better)
Translates to: LLGGVWVRENPETAVHLAATWKI*RQRGRS
Trigger: ACTCCGACCCCTCTGCCTTCAGATCTTCCATGTGGC...AGCCAGGTGGACAGCTGTTTCAGGGTTTTCTCTCACCCAAACTCCACCTAATAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR-3UTR CCA 90 bp AGGATTTTATTAGGTGGAGTTTGGGTGAGAGAAAACCCTGAAACAGCTGTCCACGCAGAGGGGTCGGAGTaGGGCCTACTTGGCTATGGT +
Preference number: 2 (lower is better)
Translates to: RILLGGVWVRENPETAVHAEGSE*GLLGYG
Trigger: ACCATAGCCAAGTAGGCCCCACTCCGACCCCTCTGC...GTGGACAGCTGTTTCAGGGTTTTCTCTCACCCAAACTCCACCTAATAAAATCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR-3UTR CCA 90 bp AGGATTTTATTAGGTGGAGTTTGGGTGAGAGAAAACCCTGAAACAGCTGTCCACAGCAGCCCACTGAGCTaGGGCCACATGGAAGATCTG +
Preference number: 2 (lower is better)
Translates to: RILLGGVWVRENPETAVHSSPLS*GHMEDL
Trigger: CAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCT...GTGGACAGCTGTTTCAGGGTTTTCTCTCACCCAAACTCCACCTAATAAAATCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR CAA 90 bp ACACACTTGTGTGCTACCCGTGACCACAGCCCAGCTCCTCCAGGCTaGTATCACATTTACAAGTACATACATAAATACATTACACACAGC +
Preference number: 2 (lower is better)
Translates to: THLCATRDHSPAPPG*YHIYKYIHKYITHS
Trigger: GCTGTGTGTAATGTATTTATGTATGTACTTGTAAATGTGATACAAGCCTGGAGGAGCTGGGCTGTGGTCACGGGTAGCACACAAGTGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR TCA 72 bp GAGGGTCTGGGAGGCAGGCTTCCCACAGGGCTCAGCTaGCAGTTGTCTCAGGATCCCAGCAAGGGCACGGGG +
Preference number: 3 (lower is better)
Translates to: EGLGGRLPTGLS*QLSQDPSKGTG
Trigger: CCCCGTGCCCTTGCTGGGATCCTGAGACAACTGTCAGCTGAGCCCTGTGGGAAGCCTGCCTCCCAGACCCTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR GCA 72 bp CAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTaGGCAGACGGACAGGCTTCTGCTGTGCGCAGACGG +
Preference number: 3 (lower is better)
Translates to: QSRTRPKAEALL*ADGQASAVRRR
Trigger: CCGTCTGCGCACAGCAGAAGCCTGTCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR GCA 72 bp GTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTaGTGTGCGCAGACGGACAGGCTTCTGCTGTGCGCA +
Preference number: 3 (lower is better)
Translates to: VPRAGPDPKRKP*CAQTDRLLLCA
Trigger: TGCGCACAGCAGAAGCCTGTCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGAC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR GCA 72 bp AAGCCCTGCTGTGCGCAGACGGACAGGCTTCTGCTGTaGGCAGACGGACAGGCTTCTGCTGGACAGGGGTTA +
Preference number: 3 (lower is better)
Translates to: KPCCAQTDRLLL*ADGQASAGQGL
Trigger: TAACCCCTGTCCAGCAGAAGCCTGTCCGTCTGCGCACAGCAGAAGCCTGTCCGTCTGCGCACAGCAGGGCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR CCA 72 bp GGCCACATGGAAGATCTGAAGGCAGAGGGGTCGGAGTaGGGCCTACTTGGCTATGGTAAGGGTGTCTGGACT +
Preference number: 3 (lower is better)
Translates to: GHMEDLKAEGSE*GLLGYGKGVWT
Trigger: AGTCCAGACACCCTTACCATAGCCAAGTAGGCCCCACTCCGACCCCTCTGCCTTCAGATCTTCCATGTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR-3UTR CAA 90 bp GACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACCAGCTCCTCCAGGCTaGTATCACATTTACAAGTAC +
Preference number: 3 (lower is better)
Translates to: DKSPEQDQTQSGSPAVRRPAPPG*YHIYKY
Trigger: GTACTTGTAAATGTGATACAAGCCTGGAGGAGCTGG...TCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR-3UTR CAA 90 bp AGACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGCCAGCTCCTCCAGGCTaGTATCACATTTACAAGTAC +
Preference number: 3 (lower is better)
Translates to: RQVPRAGPDPKRKPCCAQPAPPG*YHIYKY
Trigger: GTACTTGTAAATGTGATACAAGCCTGGAGGAGCTGG...CTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR CCA 72 bp AACCCTGAAACAGCTGTCCACCTGGCTCAGGACAACTaGGATGGGGGAGCCTTTGATTGCAGACAGGCTTTC +
Preference number: 3 (lower is better)
Translates to: NPETAVHLAQDN*DGGAFDCRQAF
Trigger: GAAAGCCTGTCTGCAATCAAAGGCTCCCCCATCCCAGTTGTCCTGAGCCAGGTGGACAGCTGTTTCAGGGTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR GCA 72 bp GGACAGGCTTCTGCTGTGCGCAGACGGACAGGCTTCTaGTGGACAGGGGTTATTTCTTCTGTTTCCAGATTA +
Preference number: 3 (lower is better)
Translates to: GQASAVRRRTGF*WTGVISSVSRL
Trigger: TAATCTGGAAACAGAAGAAATAACCCCTGTCCAGCAGAAGCCTGTCCGTCTGCGCACAGCAGAAGCCTGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR CCA 72 bp AATGAGATAAGTCGTGATTCTTCATTGGTACTGACCTaGCCCCAAACCACCAGTCCTTCAGTGGCACACCCA +
Preference number: 3 (lower is better)
Translates to: NEISRDSSLVLT*PQTTSPSVAHP
Trigger: TGGGTGTGCCACTGAAGGACTGGTGGTTTGGGGCCAGGTCAGTACCAATGAAGAATCACGACTTATCTCATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR-3UTR CAA 90 bp TTATTAGGTGGAGTTTGGGTGAGAGAAAACCCTGAAACAGCTGTCCACCTGGCTAGTCGTGATTCTTCATaGGTACTGACCTGGCCCCAA +
Preference number: 3 (lower is better)
Translates to: LLGGVWVRENPETAVHLASRDSS*VLTWPQ
Trigger: TTGGGGCCAGGTCAGTACCAATGAAGAATCACGACT...AGCCAGGTGGACAGCTGTTTCAGGGTTTTCTCTCACCCAAACTCCACCTAATAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR TCA 72 bp GATTTTATTAGGTGGAGTTTGGGTGAGAGAAAACCCTaGAACAGCTGTCCACCTGGCTCAGGACAACTGGGA +
Preference number: 3 (lower is better)
Translates to: DFIRWSLGERKP*NSCPPGSGQLG
Trigger: TCCCAGTTGTCCTGAGCCAGGTGGACAGCTGTTTCAGGGTTTTCTCTCACCCAAACTCCACCTAATAAAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR-3UTR CAA 90 bp GACAGGCTTCTGCTGGACAGGGGTTATTTCTTCTGTTTCCAGATTAAGATTTGTAGTCGTGATTCTTCATaGGTACTGACCTGGCCCCAA +
Preference number: 3 (lower is better)
Translates to: DRLLLDRGYFFCFQIKICSRDSS*VLTWPQ
Trigger: TTGGGGCCAGGTCAGTACCAATGAAGAATCACGACT...ACAAATCTTAATCTGGAAACAGAAGAAATAACCCCTGTCCAGCAGAAGCCTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR TCA 72 bp GACAGGCTTTCACTGAGATGGATGGAAGCAGATCTTTaGTTTCTTTATAAGGGAGCTGACTGGCTGCACATC +
Preference number: 3 (lower is better)
Translates to: DRLSLRWMEADL*FLYKGADWLHI
Trigger: GATGTGCAGCCAGTCAGCTCCCTTATAAAGAAATCAAAGATCTGCTTCCATCCATCTCAGTGAAAGCCTGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR GCA 72 bp CAGATCTTTGATTTCTTTATAAGGGAGCTGACTGGCTaGACATCTCTGAGACCTAGTGCAGATTTTGTTTTT +
Preference number: 3 (lower is better)
Translates to: QIFDFFIRELTG*TSLRPSADFVF
Trigger: AAAAACAAAATCTGCACTAGGTCTCAGAGATGTGCAGCCAGTCAGCTCCCTTATAAAGAAATCAAAGATCTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp CAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCCGCCGTGTGGTGGGTCTaGGACTGGCTCTGCTGGGCC +
Preference number: 4 (lower is better)
Translates to: QGHGAPGRCSMCSLLPRAAVWWV*DWLCWA
Trigger: GGCCCAGCAGAGCCAGTCTCAGACCCACCACACGGC...GGCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp ACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCCCACCCCCAGGCAGACGGCAGGCTaGATGGTGGAGGAGTCCCGG +
Preference number: 4 (lower is better)
Translates to: TGLQEGAPCVPSCPEPTPRQTAG*MVEESR
Trigger: CCGGGACTCCTCCACCATTCAGCCTGCCGTCTGCCT...GGGGGTGGGCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp TCTCAGGATCCCAGCAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCGGGCCAGGGGCCCGGTaGAGCCCAAGGCAGACGGCA +
Preference number: 4 (lower is better)
Translates to: SQDPSKGTGLQEGAPCVPGPGAR*SPRQTA
Trigger: TGCCGTCTGCCTTGGGCTCCACCGGGCCCCTGGCCC...GGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTGCTGGGATCCTGAGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp ACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCCCACCCCCGAGTGGGGCTGCTGGTaGGCCGGCATGATGTGCAGG +
Preference number: 4 (lower is better)
Translates to: TGLQEGAPCVPSCPEPTPEWGCW*AGMMCR
Trigger: CCTGCACATCATGCCGGCCCACCAGCAGCCCCACTC...GGGGGTGGGCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp CAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCCTGGCTCTGCTGGGCCTaGGCTGGGGTCGTTGGAGGT +
Preference number: 4 (lower is better)
Translates to: QGHGAPGRCSMCSLLPRAWLCWA*AGVVGG
Trigger: ACCTCCAACGACCCCAGCTCAGGCCCAGCAGAGCCA...GGCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp CACACCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGAGAGGTCGCCGCTGCTaGGAAGGCGGCGGAGGATGC +
Preference number: 4 (lower is better)
Translates to: HTQQPTELGPHGRSEGRGRGRRC*EGGGGC
Trigger: GCATCCTCCGCCGCCTTCTCAGCAGCGGCGACCTCT...CCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGGTGTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp GCAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCGGGCCCACGAGGTACTaGTTGTGTAGCAGGGGAGGC +
Preference number: 4 (lower is better)
Translates to: ARARGSRKVLHVFPPAQSGPTRY*LCSRGG
Trigger: GCCTCCCCTGCTACACAATCAGTACCTCGTGGGCCC...GCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp CCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGGTCGAGGCAGACGGCAGGCTaGATGGTGGAGGAGTCCCGG +
Preference number: 4 (lower is better)
Translates to: PSSPLSWGHMEDLKAEGSRQTAG*MVEESR
Trigger: CCGGGACTCCTCCACCATTCAGCCTGCCGTCTGCCT...CGACCCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp GTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGACCCCCCAGGCACAGGCTaGTCACAGTGCTCATGCTCC +
Preference number: 4 (lower is better)
Translates to: VPRAGPDPKRKPCCAQTDPPGTG*SQCSCS
Trigger: GGAGCATGAGCACTGTGAGCAGCCTGTGCCTGGGGG...GTCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGAC
66% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp GTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGACCTGACGGCCTGGGTCTaGTGTTGCTGTCGCTGGCTC +
Preference number: 4 (lower is better)
Translates to: VPRAGPDPKRKPCCAQTDLTAWV*CCCRWL
Trigger: GAGCCAGCGACAGCAACACCAGACCCAGGCCGTCAG...GTCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp GTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGACTCAGGGAGGGCAAGGTaGCAGTGTGCTGGGCTGAGG +
Preference number: 4 (lower is better)
Translates to: VPRAGPDPKRKPCCAQTDSGRAR*QCAGLR
Trigger: CCTCAGCCCAGCACACTGCCACCTTGCCCTCCCTGA...GTCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp GCAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCTGGTGGTGCAACAGCTaGGAGTGGGGCTGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: ARARGSRKVLHVFPPAQSWWCNS*EWGCWW
Trigger: CCACCAGCAGCCCCACTCCCAGCTGTTGCACCACCA...GCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp CCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGGTCGTGGGCTGAAGGGAGCTaGGCTGGCTGCGCTGACCAG +
Preference number: 4 (lower is better)
Translates to: PSSPLSWGHMEDLKAEGSWAEGS*AGCADQ
Trigger: CTGGTCAGCGCAGCCAGCCCAGCTCCCTTCAGCCCA...CGACCCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp AAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGAGGGAGCTGCTGAGCTaGGAGAGAGGGCTGCTGGAC +
Preference number: 4 (lower is better)
Translates to: KSPEQDQTQSGSPAVRRRRELLS*ERGLLD
Trigger: GTCCAGCAGCCCTCTCTCTCAGCTCAGCAGCTCCCT...CCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp TCTCAGGATCCCAGCAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTGGCTCTGCTGGGCCTaGGCTGGGGTCGTTGGAGGT +
Preference number: 4 (lower is better)
Translates to: SQDPSKGTGLQEGAPCVPWLCWA*AGVVGG
Trigger: ACCTCCAACGACCCCAGCTCAGGCCCAGCAGAGCCA...GGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTGCTGGGATCCTGAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp AAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGCCCCCAGGCACAGGCTaGTCACAGTGCTCATGCTCC +
Preference number: 4 (lower is better)
Translates to: KSPEQDQTQSGSPAVRRRPPGTG*SQCSCS
Trigger: GGAGCATGAGCACTGTGAGCAGCCTGTGCCTGGGGG...CCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp GCAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCTGGGGTCGTTGGAGGTaGAGGGGATGCAGAGTCTCC +
Preference number: 4 (lower is better)
Translates to: ARARGSRKVLHVFPPAQSWGRWR*RGCRVS
Trigger: GGAGACTCTGCATCCCCTGCACCTCCAACGACCCCA...GCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp GACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGAAGCTGGGAGTGGGGCTaGTGGTGGGCCGGCATGATG +
Preference number: 4 (lower is better)
Translates to: DKSPEQDQTQSGSPAVRRSWEWG*WWAGMM
Trigger: CATCATGCCGGCCCACCAGCAGCCCCACTCCCAGCT...TCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp CAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCCTGCTGTAGGTGGTGGTaGAACAGCTGGGAGTGGGGC +
Preference number: 4 (lower is better)
Translates to: QGHGAPGRCSMCSLLPRACCRWW*NSWEWG
Trigger: GCCCCACTCCCAGCTGTTGCACCACCACCTACAGCA...GGCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp GTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGACAGCAGCAGTGGTGGCTaGGGGGCTCGCAGTGTCATT +
Preference number: 4 (lower is better)
Translates to: VPRAGPDPKRKPCCAQTDSSSGG*GARSVI
Trigger: AATGACACTGCGAGCCCCCCAGCCACCACTGCTGCT...GTCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp ACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCCCACCCCCGAGGTCATGCTGTTCTaGTGGCCAGAGAGGGAGCTG +
Preference number: 4 (lower is better)
Translates to: TGLQEGAPCVPSCPEPTPEVMLF*WPEREL
Trigger: CAGCTCCCTCTCTGGCCACCAGAACAGCATGACCTC...GGGGGTGGGCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp GACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACTGCTGGGCCTGAGCTaGGGTCGTTGGAGGTGCAGG +
Preference number: 4 (lower is better)
Translates to: DKSPEQDQTQSGSPAVRRLLGLS*GRWRCR
Trigger: CCTGCACCTCCAACGACCCCAGCTCAGGCCCAGCAG...TCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp ACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCCCACCCCCCACCACTTGTTTCTGTaGCTGGGCTGCGTGTGCTGT +
Preference number: 4 (lower is better)
Translates to: TGLQEGAPCVPSCPEPTPHHLFL*LGCVCC
Trigger: ACAGCACACGCAGCCCAGTCACAGAAACAAGTGGTG...GGGGGTGGGCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGT
63% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp GCAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCTGCTGTGCCCAGGTGTaGCATGGTTCTCTGCTGGAG +
Preference number: 4 (lower is better)
Translates to: ARARGSRKVLHVFPPAQSCCAQV*HGSLLE
Trigger: CTCCAGCAGAGAACCATGTCACACCTGGGCACAGCA...GCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp ACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCCCACCCCCGAACATTCAGCCCTGTaGCATCTGAAGACCCGGGCA +
Preference number: 4 (lower is better)
Translates to: TGLQEGAPCVPSCPEPTPEHSAL*HLKTRA
Trigger: TGCCCGGGTCTTCAGATGTCACAGGGCTGAATGTTC...GGGGGTGGGCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp ACCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGGTCGGGCCCACGAGGTACTaGTTGTGTAGCAGGGGAGGC +
Preference number: 4 (lower is better)
Translates to: TQQPTELGPHGRSEGRGVGPTRY*LCSRGG
Trigger: GCCTCCCCTGCTACACAATCAGTACCTCGTGGGCCC...GACCCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp CAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGACAGGCTTGCCGCCTCTTCCCTTaGGGTTGTTGGTTCCCCGTC +
Preference number: 4 (lower is better)
Translates to: QSRTRPKAEALLCADGQACRLFP*GCWFPV
Trigger: GACGGGGAACCAACAACCGCAAGGGAAGAGGCGGCA...AGCCTGTCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp AAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGGCCTGGGTCTGGTGTTaGTGTCGCTGGCTCAACTGG +
Preference number: 4 (lower is better)
Translates to: KSPEQDQTQSGSPAVRRRAWVWC*CRWLNW
Trigger: CCAGTTGAGCCAGCGACAGCAACACCAGACCCAGGC...CCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp ACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCCCACCCCCCCCGGGCATTTCCACTaGGGACACAGGAACCTTAGA +
Preference number: 4 (lower is better)
Translates to: TGLQEGAPCVPSCPEPTPPGHFH*GHRNLR
Trigger: TCTAAGGTTCCTGTGTCCGCAGTGGAAATGCCCGGG...GGGGGTGGGCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGT
63% GC, longest homopolymer 8 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp CAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCCTGCTCACAGTGCTCATaGTCCCAGGCAGGACAACCC +
Preference number: 4 (lower is better)
Translates to: QGHGAPGRCSMCSLLPRACSQCS*SQAGQP
Trigger: GGGTTGTCCTGCCTGGGAGCATGAGCACTGTGAGCA...GGCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp GTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGACGGTGTAGTCTCCTGCTaGCGTCCCCTGGGTCAAATC +
Preference number: 4 (lower is better)
Translates to: VPRAGPDPKRKPCCAQTDGVVSC*RPLGQI
Trigger: GATTTGACCCAGGGGACGGCAGCAGGAGACTACACC...GTCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp AGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGATGCTGTAGGTGGTGGTaGAACAGCTGGGAGTGGGGC +
Preference number: 4 (lower is better)
Translates to: SPQSRTRPKAEALLCADGCCRWW*NSWEWG
Trigger: GCCCCACTCCCAGCTGTTGCACCACCACCTACAGCA...TCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp CAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCCTTCCCTTGCGGTTGTTaGTTCCCCGTCCACGACTCG +
Preference number: 4 (lower is better)
Translates to: QGHGAPGRCSMCSLLPRAFPCGC*FPVHDS
Trigger: CGAGTCGTGGACGGGGAACCAACAACCGCAAGGGAA...GGCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp CCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGGTCGCTTCGGTGGCTTGGGTaGGAGGAGCAGGCTTGTGGA +
Preference number: 4 (lower is better)
Translates to: PSSPLSWGHMEDLKAEGSLRWLG*EEQACG
Trigger: TCCACAAGCCTGCTCCTCCCACCCAAGCCACCGAAG...CGACCCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp ACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACCTGACGGCCTGGGTCTaGTGTTGCTGTCGCTGGCTC +
Preference number: 4 (lower is better)
Translates to: TSPQSRTRPKAEALLCADLTAWV*CCCRWL
Trigger: GAGCCAGCGACAGCAACACCAGACCCAGGCCGTCAG...GTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp CACACCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGGGGACACTGACGGCCTaGGTCTGGTGTTGCTGTCGC +
Preference number: 4 (lower is better)
Translates to: HTQQPTELGPHGRSEGRGGTLTA*VWCCCR
Trigger: GCGACAGCAACACCAGACCCAGGCCGTCAGTGTCCC...CCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGGTGTG
63% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp GACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGATCAGGGAGGGCAAGGTaGCAGTGTGCTGGGCTGAGG +
Preference number: 4 (lower is better)
Translates to: DKSPEQDQTQSGSPAVRRSGRAR*QCAGLR
Trigger: CCTCAGCCCAGCACACTGCCACCTTGCCCTCCCTGA...TCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp AGACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGCGGTGCTCTCCACGCTaGCATGAGTGTGTGGCGTGC +
Preference number: 4 (lower is better)
Translates to: RQVPRAGPDPKRKPCCAQRCSPR*HECVAC
Trigger: GCACGCCACACACTCATGCCAGCGTGGAGAGCACCG...CTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp ACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCCCACCCCCCATACTGGAAGGCACTaGGCACGCCTGTGTAGTAGG +
Preference number: 4 (lower is better)
Translates to: TGLQEGAPCVPSCPEPTPHTGRH*ARLCSR
Trigger: CCTACTACACAGGCGTGCCCAGTGCCTTCCAGTATG...GGGGGTGGGCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGT
63% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp CAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGACAGGCTAGACGGCAGGCTGAATaGTGGAGGAGTCCCGGCATG +
Preference number: 4 (lower is better)
Translates to: QSRTRPKAEALLCADGQARRQAE*WRSPGM
Trigger: CATGCCGGGACTCCTCCACCATTCAGCCTGCCGTCT...AGCCTGTCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp AGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGACAGCCCTGTGACATCTaGAGACCCGGGCATTTCCAC +
Preference number: 4 (lower is better)
Translates to: SPQSRTRPKAEALLCADGQPCDI*RPGHFH
Trigger: GTGGAAATGCCCGGGTCTTCAGATGTCACAGGGCTG...TCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp GACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGAAACAGAGCCTGGAGCTaGGTCGGGTGGGCTTGCAGA +
Preference number: 4 (lower is better)
Translates to: DKSPEQDQTQSGSPAVRRNRAWS*VGWACR
Trigger: TCTGCAAGCCCACCCGACTCAGCTCCAGGCTCTGTT...TCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp CACACCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGCTCTCCACGCTGGCATaGGTGTGTGGCGTGCTTGTG +
Preference number: 4 (lower is better)
Translates to: HTQQPTELGPHGRSEGRGLSTLA*VCGVLV
Trigger: CACAAGCACGCCACACACTCATGCCAGCGTGGAGAG...CCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGGTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp TCTCAGGATCCCAGCAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCCTCTCCACGCTGGCATaGGTGTGTGGCGTGCTTGTG +
Preference number: 4 (lower is better)
Translates to: SQDPSKGTGLQEGAPCVPLSTLA*VCGVLV
Trigger: CACAAGCACGCCACACACTCATGCCAGCGTGGAGAG...GGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTGCTGGGATCCTGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp GAGAAAACCCTGAAACAGCTGTCCACCTGGCTCAGGACAACTGGGATGGGGGAGAGAGGTCGCCGCTGCTaGGAAGGCGGCGGAGGATGC +
Preference number: 4 (lower is better)
Translates to: EKTLKQLSTWLRTTGMGERGRRC*EGGGGC
Trigger: GCATCCTCCGCCGCCTTCTCAGCAGCGGCGACCTCT...CTCCCCCATCCCAGTTGTCCTGAGCCAGGTGGACAGCTGTTTCAGGGTTTTCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp TACTTGGCTATGGTAAGGGTGTCTGGACTGGGAGCACACACTTGTGTGCTACCCCTGGGCTGGCTGCGCTaGCCAGAGCCGCTCGGGGCA +
Preference number: 4 (lower is better)
Translates to: YLAMVRVSGLGAHTCVLPLGWLR*PEPLGA
Trigger: TGCCCCGAGCGGCTCTGGTCAGCGCAGCCAGCCCAG...GGGTAGCACACAAGTGTGTGCTCCCAGTCCAGACACCCTTACCATAGCCAAGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp GACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACTGTCCCTCTGCCCCTaGCACGTCCAAATCCTCTGC +
Preference number: 4 (lower is better)
Translates to: DKSPEQDQTQSGSPAVRRLSLCP*HVQILC
Trigger: GCAGAGGATTTGGACGTGGCAGGGGCAGAGGGACAG...TCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp GCAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCGGCAGAAGTGGAGTTTaGAGTCCCTGGTGCCATCTG +
Preference number: 4 (lower is better)
Translates to: ARARGSRKVLHVFPPAQSGRSGV*SPWCHL
Trigger: CAGATGGCACCAGGGACTGCAAACTCCACTTCTGCC...GCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp TCTCAGGATCCCAGCAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCGCCTGGGTCTGGTGTTaGTGTCGCTGGCTCAACTGG +
Preference number: 4 (lower is better)
Translates to: SQDPSKGTGLQEGAPCVPAWVWC*CRWLNW
Trigger: CCAGTTGAGCCAGCGACAGCAACACCAGACCCAGGC...GGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTGCTGGGATCCTGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp ACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCCCACCCCCGCTCACAGATGGGAGTaGGGAAGGGTCTGTCTTCTT +
Preference number: 4 (lower is better)
Translates to: TGLQEGAPCVPSCPEPTPAHRWE*GRVCLL
Trigger: AAGAAGACAGACCCTTCCGCACTCCCATCTGTGAGC...GGGGGTGGGCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp AGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGAGCTGAGAGAGAGGGCTaGTGGACAGTTCAGCAGCAG +
Preference number: 4 (lower is better)
Translates to: SPQSRTRPKAEALLCADGAEREG*WTVQQQ
Trigger: CTGCTGCTGAACTGTCCAGCAGCCCTCTCTCTCAGC...TCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp AAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGACAGGCTGCTCACAGTaGTCATGCTCCCAGGCAGGA +
Preference number: 4 (lower is better)
Translates to: KSPEQDQTQSGSPAVRRRTGCSQ*SCSQAG
Trigger: TCCTGCCTGGGAGCATGAGCACTGTGAGCAGCCTGT...CCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp TCTCAGGATCCCAGCAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTGGGGTCGTTGGAGGTaGAGGGGATGCAGAGTCTCC +
Preference number: 4 (lower is better)
Translates to: SQDPSKGTGLQEGAPCVPWGRWR*RGCRVS
Trigger: GGAGACTCTGCATCCCCTGCACCTCCAACGACCCCA...GGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTGCTGGGATCCTGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp AGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGAGGTGTAGTCTCCTGCTaGCGTCCCCTGGGTCAAATC +
Preference number: 4 (lower is better)
Translates to: SPQSRTRPKAEALLCADGGVVSC*RPLGQI
Trigger: GATTTGACCCAGGGGACGGCAGCAGGAGACTACACC...TCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp AGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGATTCCCTTGCGGTTGTTaGTTCCCCGTCCACGACTCG +
Preference number: 4 (lower is better)
Translates to: SPQSRTRPKAEALLCADGFPCGC*FPVHDS
Trigger: CGAGTCGTGGACGGGGAACCAACAACCGCAAGGGAA...TCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp ACCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGGTCCTTCGGTGGCTTGGGTaGGAGGAGCAGGCTTGTGGA +
Preference number: 4 (lower is better)
Translates to: TQQPTELGPHGRSEGRGVLRWLG*EEQACG
Trigger: TCCACAAGCCTGCTCCTCCCACCCAAGCCACCGAAG...GACCCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp CCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGGTCGGTGAAGACAAGGGCTTaGCCAAAGCCCTGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: PSSPLSWGHMEDLKAEGSVKTRA*PKPCCW
Trigger: CCAGCAGCAGGGCTTTGGCCAAGCCCTTGTCTTCAC...CGACCCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp ACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCCCACCCCCTGTCGCTGGCTCAACTaGCTGAGAACTGGAGATGGT +
Preference number: 4 (lower is better)
Translates to: TGLQEGAPCVPSCPEPTPCRWLN*LRTGDG
Trigger: ACCATCTCCAGTTCTCAGCCAGTTGAGCCAGCGACA...GGGGGTGGGCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp TCTCAGGATCCCAGCAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCGATTCCCATCTCGGCTaGCAAGGGCTGTGGGTGCTG +
Preference number: 4 (lower is better)
Translates to: SQDPSKGTGLQEGAPCVPDSHLG*QGLWVL
Trigger: CAGCACCCACAGCCCTTGCCAGCCGAGATGGGAATC...GGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTGCTGGGATCCTGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp CAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCCATAGTAGGCCCATACTaGAAGGCACTGGGCACGCCT +
Preference number: 4 (lower is better)
Translates to: QGHGAPGRCSMCSLLPRAIVGPY*KALGTP
Trigger: AGGCGTGCCCAGTGCCTTCCAGTATGGGCCTACTAT...GGCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp AAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGCACCATAGCCACCCTTaGTGTAGTCTCCTGCTGCCG +
Preference number: 4 (lower is better)
Translates to: KSPEQDQTQSGSPAVRRRHHSHP*CSLLLP
Trigger: CGGCAGCAGGAGACTACACCAAGGGTGGCTATGGTG...CCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp AAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGCGGCAGGCTGAATGGTaGAGGAGTCCCGGCATGAAA +
Preference number: 4 (lower is better)
Translates to: KSPEQDQTQSGSPAVRRRRQAEW*RSPGMK
Trigger: TTTCATGCCGGGACTCCTCCACCATTCAGCCTGCCG...CCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp CAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCCCTAGTTTGTCCAGTATaGAGCGCTGCCGTAGGTGGG +
Preference number: 4 (lower is better)
Translates to: QGHGAPGRCSMCSLLPRALVCPV*SAAVGG
Trigger: CCCACCTACGGCAGCGCTCCATACTGGACAAACTAG...GGCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp CCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGGTCGTCCAGGGCCCCAAACTaGACATTCAGCCCTGTGACA +
Preference number: 4 (lower is better)
Translates to: PSSPLSWGHMEDLKAEGSSRAPN*TFSPVT
Trigger: TGTCACAGGGCTGAATGTTCAGTTTGGGGCCCTGGA...CGACCCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp AGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGATCCAGGGCCCCAAACTaGACATTCAGCCCTGTGACA +
Preference number: 4 (lower is better)
Translates to: SPQSRTRPKAEALLCADGSRAPN*TFSPVT
Trigger: TGTCACAGGGCTGAATGTTCAGTTTGGGGCCCTGGA...TCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp AGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGAGGCAGAAGTGGAGTTTaGAGTCCCTGGTGCCATCTG +
Preference number: 4 (lower is better)
Translates to: SPQSRTRPKAEALLCADGGRSGV*SPWCHL
Trigger: CAGATGGCACCAGGGACTGCAAACTCCACTTCTGCC...TCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp TCTCAGGATCCCAGCAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTGCTCACAGTGCTCATaGTCCCAGGCAGGACAACCC +
Preference number: 4 (lower is better)
Translates to: SQDPSKGTGLQEGAPCVPCSQCS*SQAGQP
Trigger: GGGTTGTCCTGCCTGGGAGCATGAGCACTGTGAGCA...GGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTGCTGGGATCCTGAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp ACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGATTCAAAAAGGGCTaGTGGGCCGTGTGGTGGGTC +
Preference number: 4 (lower is better)
Translates to: TSPQSRTRPKAEALLCADGFKKG*WAVWWV
Trigger: GACCCACCACACGGCCCAGCAGCCCTTTTTGAATCC...GTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp GAGAAAACCCTGAAACAGCTGTCCACCTGGCTCAGGACAACTGGGATGGGGGAGAGCTGGGAGTGGGGCTaGTGGTGGGCCGGCATGATG +
Preference number: 4 (lower is better)
Translates to: EKTLKQLSTWLRTTGMGESWEWG*WWAGMM
Trigger: CATCATGCCGGCCCACCAGCAGCCCCACTCCCAGCT...CTCCCCCATCCCAGTTGTCCTGAGCCAGGTGGACAGCTGTTTCAGGGTTTTCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp TCTCAGGATCCCAGCAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCGGAGGAGCAGGCTTGTaGAGCAAGGCCACCAGATCA +
Preference number: 4 (lower is better)
Translates to: SQDPSKGTGLQEGAPCVPGGAGL*SKATRS
Trigger: TGATCTGGTGGCCTTGCTCCACAAGCCTGCTCCTCC...GGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTGCTGGGATCCTGAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp CACACCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGGTGAAGACAAGGGCTTaGCCAAAGCCCTGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: HTQQPTELGPHGRSEGRGVKTRA*PKPCCW
Trigger: CCAGCAGCAGGGCTTTGGCCAAGCCCTTGTCTTCAC...CCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGGTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp GCAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCTGGTGTTGCTGTCGCTaGCTCAACTGGCTGAGAACT +
Preference number: 4 (lower is better)
Translates to: ARARGSRKVLHVFPPAQSWCCCR*LNWLRT
Trigger: AGTTCTCAGCCAGTTGAGCCAGCGACAGCAACACCA...GCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp GACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGAGTCATGCTGTTCTGGTaGCCAGAGAGGGAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: DKSPEQDQTQSGSPAVRRVMLFW*PERELL
Trigger: CAGCAGCTCCCTCTCTGGCCACCAGAACAGCATGAC...TCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp TCTCAGGATCCCAGCAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCGGCTGGCAAGGGCTGTaGGTGCTGCAAAGGGAATTC +
Preference number: 4 (lower is better)
Translates to: SQDPSKGTGLQEGAPCVPGWQGL*VLQREF
Trigger: GAATTCCCTTTGCAGCACCCACAGCCCTTGCCAGCC...GGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTGCTGGGATCCTGAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp GACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGAGGCTGGCAAGGGCTGTaGGTGCTGCAAAGGGAATTC +
Preference number: 4 (lower is better)
Translates to: DKSPEQDQTQSGSPAVRRGWQGL*VLQREF
Trigger: GAATTCCCTTTGCAGCACCCACAGCCCTTGCCAGCC...TCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp GACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACACCATAGCCACCCTTaGTGTAGTCTCCTGCTGCCG +
Preference number: 4 (lower is better)
Translates to: DKSPEQDQTQSGSPAVRRHHSHP*CSLLLP
Trigger: CGGCAGCAGGAGACTACACCAAGGGTGGCTATGGTG...TCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp GAGAAAACCCTGAAACAGCTGTCCACCTGGCTCAGGACAACTGGGATGGGGGAGTGGGAGTGGGGCTGCTaGTGGGCCGGCATGATGTGC +
Preference number: 4 (lower is better)
Translates to: EKTLKQLSTWLRTTGMGEWEWGC*WAGMMC
Trigger: GCACATCATGCCGGCCCACCAGCAGCCCCACTCCCA...CTCCCCCATCCCAGTTGTCCTGAGCCAGGTGGACAGCTGTTTCAGGGTTTTCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp GAGAAAACCCTGAAACAGCTGTCCACCTGGCTCAGGACAACTGGGATGGGGGAGTGGGCTGAAGGGAGCTaGGCTGGCTGCGCTGACCAG +
Preference number: 4 (lower is better)
Translates to: EKTLKQLSTWLRTTGMGEWAEGS*AGCADQ
Trigger: CTGGTCAGCGCAGCCAGCCCAGCTCCCTTCAGCCCA...CTCCCCCATCCCAGTTGTCCTGAGCCAGGTGGACAGCTGTTTCAGGGTTTTCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp CACACCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGTGGAGGCTTGAGACTTaGGCTGAAGGGAGCTGGGCT +
Preference number: 4 (lower is better)
Translates to: HTQQPTELGPHGRSEGRGWRLET*AEGSWA
Trigger: AGCCCAGCTCCCTTCAGCCCAAGTCTCAAGCCTCCA...CCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGGTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp AGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGACTAGTTTGTCCAGTATaGAGCGCTGCCGTAGGTGGG +
Preference number: 4 (lower is better)
Translates to: SPQSRTRPKAEALLCADGLVCPV*SAAVGG
Trigger: CCCACCTACGGCAGCGCTCCATACTGGACAAACTAG...TCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp TCTCAGGATCCCAGCAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCCACCACTTGTTTCTGTaGCTGGGCTGCGTGTGCTGT +
Preference number: 4 (lower is better)
Translates to: SQDPSKGTGLQEGAPCVPHHLFL*LGCVCC
Trigger: ACAGCACACGCAGCCCAGTCACAGAAACAAGTGGTG...GGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTGCTGGGATCCTGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp AGACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGGTGTCTACTGTGTGCTaGCTTCGACCACCGCCATGT +
Preference number: 4 (lower is better)
Translates to: RQVPRAGPDPKRKPCCAQVSTVC*LRPPPC
Trigger: ACATGGCGGTGGTCGAAGTCAGCACACAGTAGACAC...CTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp TTGGTACTGACCTGGCCCCAAACCACCAGTCCTTCAGTGGCACACCCAGCAGCCATCCATTGGCAGCCGTaGCTGCAGCATCTGGAGCTC +
Preference number: 4 (lower is better)
Translates to: LVLTWPQTTSPSVAHPAAIHWQP*LQHLEL
Trigger: GAGCTCCAGATGCTGCAGTCACGGCTGCCAATGGAT...GGCTGCTGGGTGTGCCACTGAAGGACTGGTGGTTTGGGGCCAGGTCAGTACCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp CAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGACAGGCTGTTTGGTGCCTGAGATaGTCCACCATAGCCACCCTT +
Preference number: 4 (lower is better)
Translates to: QSRTRPKAEALLCADGQAVWCLR*STIATL
Trigger: AAGGGTGGCTATGGTGGATCATCTCAGGCACCAAAC...AGCCTGTCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp AAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGATTGGCAGCCGTGACTaGAGCATCTGGAGCTCATCA +
Preference number: 4 (lower is better)
Translates to: KSPEQDQTQSGSPAVRRRIGSRD*SIWSSS
Trigger: TGATGAGCTCCAGATGCTGCAGTCACGGCTGCCAAT...CCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp AAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGGGCAAGGGCTGTGGGTaGTGCAAAGGGAATTCCATA +
Preference number: 4 (lower is better)
Translates to: KSPEQDQTQSGSPAVRRRGKGCG*CKGNSI
Trigger: TATGGAATTCCCTTTGCAGCACCCACAGCCCTTGCC...CCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp ACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCCCACCCCCCAGTCTCCCATGAAGTaGTGTCAGAATTCCCTTCCA +
Preference number: 4 (lower is better)
Translates to: TGLQEGAPCVPSCPEPTPQSPMK*CQNSLP
Trigger: TGGAAGGGAATTCTGACACCACTTCATGGGAGACTG...GGGGGTGGGCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGT
60% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp AAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGGCAGGCTTGTCTCCTTaGCTGCAGTCAATCCCATTC +
Preference number: 4 (lower is better)
Translates to: KSPEQDQTQSGSPAVRRRAGLSP*LQSIPF
Trigger: GAATGGGATTGACTGCAGCCAAGGAGACAAGCCTGC...CCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp CAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGACAGGCTATGAGCTGGCAGAAGTaGAGTTTGCAGTCCCTGGTG +
Preference number: 4 (lower is better)
Translates to: QSRTRPKAEALLCADGQAMSWQK*SLQSLV
Trigger: CACCAGGGACTGCAAACTCCACTTCTGCCAGCTCAT...AGCCTGTCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp AGTGGGGCCTACTTGGCTATGGTAAGGGTGTCTGGACTGGGAGCACACACTTGTCTGCTGGGCCTGAGCTaGGGTCGTTGGAGGTGCAGG +
Preference number: 4 (lower is better)
Translates to: SGAYLAMVRVSGLGAHTCLLGLS*GRWRCR
Trigger: CCTGCACCTCCAACGACCCCAGCTCAGGCCCAGCAG...ACAAGTGTGTGCTCCCAGTCCAGACACCCTTACCATAGCCAAGTAGGCCCCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp TTGGTACTGACCTGGCCCCAAACCACCAGTCCTTCAGTGGCACACCCAGCAGCCGAGCGCTGCCGTAGGTaGGTTTGGAGGCTTGAGACT +
Preference number: 4 (lower is better)
Translates to: LVLTWPQTTSPSVAHPAAERCRR*VWRLET
Trigger: AGTCTCAAGCCTCCAAACCCACCTACGGCAGCGCTC...GGCTGCTGGGTGTGCCACTGAAGGACTGGTGGTTTGGGGCCAGGTCAGTACCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR CAA 72 bp GGCTATGGTAAGGGTGTCTGGACTGGGAGCACACACTaGTGTGCTACCCGTGACCACAGCCCAGCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: GYGKGVWTGSTH*CATRDHSPAPP
Trigger: TGGAGGAGCTGGGCTGTGGTCACGGGTAGCACACAAGTGTGTGCTCCCAGTCCAGACACCCTTACCATAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp TCTCAGGATCCCAGCAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCAATGTCCCCATGCTTTaGGCGGAGAACCTTCCTGTC +
Preference number: 4 (lower is better)
Translates to: SQDPSKGTGLQEGAPCVPNVPML*AENLPV
Trigger: GACAGGAAGGTTCTCCGCTCAAAGCATGGGGACATT...GGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTGCTGGGATCCTGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp CCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGGTCGTCATCTGTACCATTCTaGGCAGCTTCCCAAACTGCC +
Preference number: 4 (lower is better)
Translates to: PSSPLSWGHMEDLKAEGSSSVPF*AASQTA
Trigger: GGCAGTTTGGGAAGCTGCTCAGAATGGTACAGATGA...CGACCCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp AGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGAATGTTTCAAAGGAGTTaGCTTCGGTGGCTTGGGTGG +
Preference number: 4 (lower is better)
Translates to: SPQSRTRPKAEALLCADGMFQRS*LRWLGW
Trigger: CCACCCAAGCCACCGAAGTCAACTCCTTTGAAACAT...TCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp GCAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCTGTGCTGAGAATTTGTaGAGACAAGGGCTTGGCCAA +
Preference number: 4 (lower is better)
Translates to: ARARGSRKVLHVFPPAQSCAENL*RQGLGQ
Trigger: TTGGCCAAGCCCTTGTCTTCACAAATTCTCAGCACA...GCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp AGACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGGGAGGAGGTAACGACTaGGGTTGTGTAGGTAGAGCT +
Preference number: 4 (lower is better)
Translates to: RQVPRAGPDPKRKPCCAQGGGND*GCVGRA
Trigger: AGCTCTACCTACACAACCTCAGTCGTTACCTCCTCC...CTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp TTGGTACTGACCTGGCCCCAAACCACCAGTCCTTCAGTGGCACACCCAGCAGCCGTGTCTACTGTGTGCTaGCTTCGACCACCGCCATGT +
Preference number: 4 (lower is better)
Translates to: LVLTWPQTTSPSVAHPAAVSTVC*LRPPPC
Trigger: ACATGGCGGTGGTCGAAGTCAGCACACAGTAGACAC...GGCTGCTGGGTGTGCCACTGAAGGACTGGTGGTTTGGGGCCAGGTCAGTACCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp ACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGTTTGGTGCCTGAGATaGTCCACCATAGCCACCCTT +
Preference number: 4 (lower is better)
Translates to: TSPQSRTRPKAEALLCADVWCLR*STIATL
Trigger: AAGGGTGGCTATGGTGGATCATCTCAGGCACCAAAC...GTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp AAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGTGCTCAGCTGTTGCCTaGACCACTTGTTTCTGTGAC +
Preference number: 4 (lower is better)
Translates to: KSPEQDQTQSGSPAVRRRCSAVA*TTCFCD
Trigger: GTCACAGAAACAAGTGGTGCAGGCAACAGCTGAGCA...CCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp GACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGAGCTTGGCCAAAGCCCTaGTGCTGGGATGTTTCAAAG +
Preference number: 4 (lower is better)
Translates to: DKSPEQDQTQSGSPAVRRAWPKP*CWDVSK
Trigger: CTTTGAAACATCCCAGCAGCAGGGCTTTGGCCAAGC...TCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp AAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGGTTTGCAGTCCCTGGTaGCATCTGATTGTTGTGCTG +
Preference number: 4 (lower is better)
Translates to: KSPEQDQTQSGSPAVRRRVCSPW*HLIVVL
Trigger: CAGCACAACAATCAGATGGCACCAGGGACTGCAAAC...CCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp ACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACTGCTGTTGGCATCTGTaGTTTTTCCCGAGCACCTCG +
Preference number: 4 (lower is better)
Translates to: TSPQSRTRPKAEALLCADCCWHL*FFPSTS
Trigger: CGAGGTGCTCGGGAAAAACCACAGATGCCAACAGCA...GTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp AGACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACTTGTTTCTGTGACTaGGCTGCGTGTGCTGTTGGC +
Preference number: 4 (lower is better)
Translates to: RQVPRAGPDPKRKPCCAQTCFCD*AACAVG
Trigger: GCCAACAGCACACGCAGCCCAGTCACAGAAACAAGT...CTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp ACCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGGTCACTTGTTTCTGTGACTaGGCTGCGTGTGCTGTTGGC +
Preference number: 4 (lower is better)
Translates to: TQQPTELGPHGRSEGRGVTCFCD*AACAVG
Trigger: GCCAACAGCACACGCAGCCCAGTCACAGAAACAAGT...GACCCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp ACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGCAGGCTTGTCTCCTTaGCTGCAGTCAATCCCATTC +
Preference number: 4 (lower is better)
Translates to: TSPQSRTRPKAEALLCADAGLSP*LQSIPF
Trigger: GAATGGGATTGACTGCAGCCAAGGAGACAAGCCTGC...GTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp CCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGGTCGGGAGTTTGCAGTCCCTaGTGCCATCTGATTGTTGTG +
Preference number: 4 (lower is better)
Translates to: PSSPLSWGHMEDLKAEGSGVCSP*CHLIVV
Trigger: CACAACAATCAGATGGCACCAGGGACTGCAAACTCC...CGACCCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp AGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGACAACTGGCTGAGAACTaGAGATGGTTCAGGCTGAGA +
Preference number: 4 (lower is better)
Translates to: SPQSRTRPKAEALLCADGQLAEN*RWFRLR
Trigger: TCTCAGCCTGAACCATCTCCAGTTCTCAGCCAGTTG...TCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp ACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACTGTCGCTGGCTCAACTaGCTGAGAACTGGAGATGGT +
Preference number: 4 (lower is better)
Translates to: TSPQSRTRPKAEALLCADCRWLN*LRTGDG
Trigger: ACCATCTCCAGTTCTCAGCCAGTTGAGCCAGCGACA...GTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp ACCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGGTCTGGTGTTGCTGTCGCTaGCTCAACTGGCTGAGAACT +
Preference number: 4 (lower is better)
Translates to: TQQPTELGPHGRSEGRGVWCCCR*LNWLRT
Trigger: AGTTCTCAGCCAGTTGAGCCAGCGACAGCAACACCA...GACCCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp GAGAAAACCCTGAAACAGCTGTCCACCTGGCTCAGGACAACTGGGATGGGGGAGCTGAGCTGGGGTCGTTaGAGGTGCAGGGGATGCAGA +
Preference number: 4 (lower is better)
Translates to: EKTLKQLSTWLRTTGMGELSWGR*RCRGCR
Trigger: TCTGCATCCCCTGCACCTCCAACGACCCCAGCTCAG...CTCCCCCATCCCAGTTGTCCTGAGCCAGGTGGACAGCTGTTTCAGGGTTTTCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp GACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGATCATCTGTACCATTCTaGGCAGCTTCCCAAACTGCC +
Preference number: 4 (lower is better)
Translates to: DKSPEQDQTQSGSPAVRRSSVPF*AASQTA
Trigger: GGCAGTTTGGGAAGCTGCTCAGAATGGTACAGATGA...TCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp TTGGTACTGACCTGGCCCCAAACCACCAGTCCTTCAGTGGCACACCCAGCAGCCGGAGGAGGTAACGACTaGGGTTGTGTAGGTAGAGCT +
Preference number: 4 (lower is better)
Translates to: LVLTWPQTTSPSVAHPAAGGGND*GCVGRA
Trigger: AGCTCTACCTACACAACCTCAGTCGTTACCTCCTCC...GGCTGCTGGGTGTGCCACTGAAGGACTGGTGGTTTGGGGCCAGGTCAGTACCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp ACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACTGGAGCTGGAACGGATaGAGTAGTGTCTACTGTGTG +
Preference number: 4 (lower is better)
Translates to: TSPQSRTRPKAEALLCADWSWNG*SSVYCV
Trigger: CACACAGTAGACACTACTTCATCCGTTCCAGCTCCA...GTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp ACCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGGTCGTTTGCAGTCCCTGGTaGCATCTGATTGTTGTGCTG +
Preference number: 4 (lower is better)
Translates to: TQQPTELGPHGRSEGRGVVCSPW*HLIVVL
Trigger: CAGCACAACAATCAGATGGCACCAGGGACTGCAAAC...GACCCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp GCAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCTGCAGAGCTTTGGTATaGAATCCTGGTATGCACAGA +
Preference number: 4 (lower is better)
Translates to: ARARGSRKVLHVFPPAQSCRALV*NPGMHR
Trigger: TCTGTGCATACCAGGATTGCATACCAAAGCTCTGCA...GCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp GACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGAGGAGTTTGCAGTCCCTaGTGCCATCTGATTGTTGTG +
Preference number: 4 (lower is better)
Translates to: DKSPEQDQTQSGSPAVRRGVCSP*CHLIVV
Trigger: CACAACAATCAGATGGCACCAGGGACTGCAAACTCC...TCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp TACTTGGCTATGGTAAGGGTGTCTGGACTGGGAGCACACACTTGTGTGCTACCCGGGACACTGACGGCCTaGGTCTGGTGTTGCTGTCGC +
Preference number: 4 (lower is better)
Translates to: YLAMVRVSGLGAHTCVLPGTLTA*VWCCCR
Trigger: GCGACAGCAACACCAGACCCAGGCCGTCAGTGTCCC...GGGTAGCACACAAGTGTGTGCTCCCAGTCCAGACACCCTTACCATAGCCAAGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp ACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGGCTTGCAGAGCTTTaGTATGCAATCCTGGTATGC +
Preference number: 4 (lower is better)
Translates to: TSPQSRTRPKAEALLCADGLAEL*YAILVC
Trigger: GCATACCAGGATTGCATACCAAAGCTCTGCAAGCCC...GTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp TACTTGGCTATGGTAAGGGTGTCTGGACTGGGAGCACACACTTGTGTGCTACCCTGGTGGTGCAACAGCTaGGAGTGGGGCTGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: YLAMVRVSGLGAHTCVLPWWCNS*EWGCWW
Trigger: CCACCAGCAGCCCCACTCCCAGCTGTTGCACCACCA...GGGTAGCACACAAGTGTGTGCTCCCAGTCCAGACACCCTTACCATAGCCAAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp AAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGTTATCAAAGATCACTTaGGCAAGCCGCATCTGCTCA +
Preference number: 4 (lower is better)
Translates to: KSPEQDQTQSGSPAVRRRLSKIT*ASRICS
Trigger: TGAGCAGATGCGGCTTGCTCAAGTGATCTTTGATAA...CCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp AGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGATTATCAAAGATCACTTaGGCAAGCCGCATCTGCTCA +
Preference number: 4 (lower is better)
Translates to: SPQSRTRPKAEALLCADGLSKIT*ASRICS
Trigger: TGAGCAGATGCGGCTTGCTCAAGTGATCTTTGATAA...TCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp AAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGAATAGTCTGCAGGATTaGATGTCCCCATGCTTTGAG +
Preference number: 4 (lower is better)
Translates to: KSPEQDQTQSGSPAVRRRNSLQD*MSPCFE
Trigger: CTCAAAGCATGGGGACATTCAATCCTGCAGACTATT...CCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp ACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACCTCTGCTGGAGCAGATaGAGCAGTGAATACCTTTGT +
Preference number: 4 (lower is better)
Translates to: TSPQSRTRPKAEALLCADLCWSR*SSEYLC
Trigger: ACAAAGGTATTCACTGCTTCATCTGCTCCAGCAGAG...GTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp TCTCAGGATCCCAGCAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTGTGCTGAGAATTTGTaGAGACAAGGGCTTGGCCAA +
Preference number: 4 (lower is better)
Translates to: SQDPSKGTGLQEGAPCVPCAENL*RQGLGQ
Trigger: TTGGCCAAGCCCTTGTCTTCACAAATTCTCAGCACA...GGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTGCTGGGATCCTGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp AGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGATGCAGAGCTTTGGTATaGAATCCTGGTATGCACAGA +
Preference number: 4 (lower is better)
Translates to: SPQSRTRPKAEALLCADGCRALV*NPGMHR
Trigger: TCTGTGCATACCAGGATTGCATACCAAAGCTCTGCA...TCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp AGTGGGGCCTACTTGGCTATGGTAAGGGTGTCTGGACTGGGAGCACACACTTGTGGATTCAAAAAGGGCTaGTGGGCCGTGTGGTGGGTC +
Preference number: 4 (lower is better)
Translates to: SGAYLAMVRVSGLGAHTCGFKKG*WAVWWV
Trigger: GACCCACCACACGGCCCAGCAGCCCTTTTTGAATCC...ACAAGTGTGTGCTCCCAGTCCAGACACCCTTACCATAGCCAAGTAGGCCCCACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp AGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGATATCAGGTAAGCCAGTaGCTGAAGATACTGACACTC +
Preference number: 4 (lower is better)
Translates to: SPQSRTRPKAEALLCADGYQVSQ*LKILTL
Trigger: GAGTGTCAGTATCTTCAGGCACTGGCTTACCTGATA...TCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp CAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGACAGGCTTATCAGGTAAGCCAGTaGCTGAAGATACTGACACTC +
Preference number: 4 (lower is better)
Translates to: QSRTRPKAEALLCADGQAYQVSQ*LKILTL
Trigger: GAGTGTCAGTATCTTCAGGCACTGGCTTACCTGATA...AGCCTGTCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp TTGGTACTGACCTGGCCCCAAACCACCAGTCCTTCAGTGGCACACCCAGCAGCCCAACTGGCTGAGAACTaGAGATGGTTCAGGCTGAGA +
Preference number: 4 (lower is better)
Translates to: LVLTWPQTTSPSVAHPAAQLAEN*RWFRLR
Trigger: TCTCAGCCTGAACCATCTCCAGTTCTCAGCCAGTTG...GGCTGCTGGGTGTGCCACTGAAGGACTGGTGGTTTGGGGCCAGGTCAGTACCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp GCAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCTTGGGCTGTGGTTGGTaGGCAGATACAATATTTTCA +
Preference number: 4 (lower is better)
Translates to: ARARGSRKVLHVFPPAQSLGCGW*ADTIFS
Trigger: TGAAAATATTGTATCTGCCCACCAACCACAGCCCAA...GCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp ACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACTACAGCACTGGTCATTaGGAAAGAGGCATTCAAGGG +
Preference number: 4 (lower is better)
Translates to: TSPQSRTRPKAEALLCADYSTGH*ERGIQG
Trigger: CCCTTGAATGCCTCTTTCCCAATGACCAGTGCTGTA...GTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp TACTTGGCTATGGTAAGGGTGTCTGGACTGGGAGCACACACTTGTGTGCTACCCGATTCCCATCTCGGCTaGCAAGGGCTGTGGGTGCTG +
Preference number: 4 (lower is better)
Translates to: YLAMVRVSGLGAHTCVLPDSHLG*QGLWVL
Trigger: CAGCACCCACAGCCCTTGCCAGCCGAGATGGGAATC...GGGTAGCACACAAGTGTGTGCTCCCAGTCCAGACACCCTTACCATAGCCAAGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp TCTCAGGATCCCAGCAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTTCACCATGTTTGATTaGGGCAGCTCTCCAAATCCT +
Preference number: 4 (lower is better)
Translates to: SQDPSKGTGLQEGAPCVPFTMFD*GSSPNP
Trigger: AGGATTTGGAGAGCTGCCTCAATCAAACATGGTGAA...GGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTGCTGGGATCCTGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp TACTTGGCTATGGTAAGGGTGTCTGGACTGGGAGCACACACTTGTGTGCTACCCATCCATTGGCAGCCGTaGCTGCAGCATCTGGAGCTC +
Preference number: 4 (lower is better)
Translates to: YLAMVRVSGLGAHTCVLPIHWQP*LQHLEL
Trigger: GAGCTCCAGATGCTGCAGTCACGGCTGCCAATGGAT...GGGTAGCACACAAGTGTGTGCTCCCAGTCCAGACACCCTTACCATAGCCAAGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp GAGAAAACCCTGAAACAGCTGTCCACCTGGCTCAGGACAACTGGGATGGGGGAGGGAGGAGTCCCGGCATaGAATCCCTGCTTGTCAAAA +
Preference number: 4 (lower is better)
Translates to: EKTLKQLSTWLRTTGMGEGGVPA*NPCLSK
Trigger: TTTTGACAAGCAGGGATTTCATGCCGGGACTCCTCC...CTCCCCCATCCCAGTTGTCCTGAGCCAGGTGGACAGCTGTTTCAGGGTTTTCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp GACAGGCTTCTGCTGGACAGGGGTTATTTCTTCTGTTTCCAGATTAAGATTTGTCTGGGCTGGCTGCGCTaGCCAGAGCCGCTCGGGGCA +
Preference number: 4 (lower is better)
Translates to: DRLLLDRGYFFCFQIKICLGWLR*PEPLGA
Trigger: TGCCCCGAGCGGCTCTGGTCAGCGCAGCCAGCCCAG...ACAAATCTTAATCTGGAAACAGAAGAAATAACCCCTGTCCAGCAGAAGCCTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp CAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCCGTCATGTTAGGAAGCTaGAAAAGTCTGCTAACAGTA +
Preference number: 4 (lower is better)
Translates to: QGHGAPGRCSMCSLLPRAVMLGS*KSLLTV
Trigger: TACTGTTAGCAGACTTTTGCAGCTTCCTAACATGAC...GGCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp TACTTGGCTATGGTAAGGGTGTCTGGACTGGGAGCACACACTTGTGTGCTACCCCTTGGTGTAGTCTCCTaGTGCCGTCCCCTGGGTCAA +
Preference number: 4 (lower is better)
Translates to: YLAMVRVSGLGAHTCVLPLGVVS*CRPLGQ
Trigger: TTGACCCAGGGGACGGCAGCAGGAGACTACACCAAG...GGGTAGCACACAAGTGTGTGCTCCCAGTCCAGACACCCTTACCATAGCCAAGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp AGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGAAACTTGTCCAAAATCTaGGAGTTGGAGATGTTCACC +
Preference number: 4 (lower is better)
Translates to: SPQSRTRPKAEALLCADGNLSKI*ELEMFT
Trigger: GGTGAACATCTCCAACTCCCAGATTTTGGACAAGTT...TCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp AAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGAATATGTTTGGGCTGTaGTTGGTGGGCAGATACAAT +
Preference number: 4 (lower is better)
Translates to: KSPEQDQTQSGSPAVRRRNMFGL*LVGRYN
Trigger: ATTGTATCTGCCCACCAACCACAGCCCAAACATATT...CCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp CAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCCGATTACTATTTTCACTaGCTGAAGCTGCTGATCCAA +
Preference number: 4 (lower is better)
Translates to: QGHGAPGRCSMCSLLPRADYYFH*LKLLIQ
Trigger: TTGGATCAGCAGCTTCAGCCAGTGAAAATAGTAATC...GGCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp GACAGGCTTCTGCTGGACAGGGGTTATTTCTTCTGTTTCCAGATTAAGATTTGTGGGCCAGGGGCCCGGTaGAGCCCAAGGCAGACGGCA +
Preference number: 4 (lower is better)
Translates to: DRLLLDRGYFFCFQIKICGPGAR*SPRQTA
Trigger: TGCCGTCTGCCTTGGGCTCCACCGGGCCCCTGGCCC...ACAAATCTTAATCTGGAAACAGAAGAAATAACCCCTGTCCAGCAGAAGCCTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp ACAGGGAATGAGATAAGTCGTGATTCTTCATTGGTACTGACCTGGCCCCAAACCGAGTGGGGCTGCTGGTaGGCCGGCATGATGTGCAGG +
Preference number: 4 (lower is better)
Translates to: TGNEISRDSSLVLTWPQTEWGCW*AGMMCR
Trigger: CCTGCACATCATGCCGGCCCACCAGCAGCCCCACTC...GGTTTGGGGCCAGGTCAGTACCAATGAAGAATCACGACTTATCTCATTCCCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp TTGGTACTGACCTGGCCCCAAACCACCAGTCCTTCAGTGGCACACCCAGCAGCCAATAGTCTGCAGGATTaGATGTCCCCATGCTTTGAG +
Preference number: 4 (lower is better)
Translates to: LVLTWPQTTSPSVAHPAANSLQD*MSPCFE
Trigger: CTCAAAGCATGGGGACATTCAATCCTGCAGACTATT...GGCTGCTGGGTGTGCCACTGAAGGACTGGTGGTTTGGGGCCAGGTCAGTACCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp ACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGAGCAGATGAAGCAGTaGATACCTTTGTTTCAGAGA +
Preference number: 4 (lower is better)
Translates to: TSPQSRTRPKAEALLCADEQMKQ*IPLFQR
Trigger: TCTCTGAAACAAAGGTATTCACTGCTTCATCTGCTC...GTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp ACAGGGAATGAGATAAGTCGTGATTCTTCATTGGTACTGACCTGGCCCCAAACCAGGGAGCTGCTGAGCTaGGAGAGAGGGCTGCTGGAC +
Preference number: 4 (lower is better)
Translates to: TGNEISRDSSLVLTWPQTRELLS*ERGLLD
Trigger: GTCCAGCAGCCCTCTCTCTCAGCTCAGCAGCTCCCT...GGTTTGGGGCCAGGTCAGTACCAATGAAGAATCACGACTTATCTCATTCCCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp AGGATTTTATTAGGTGGAGTTTGGGTGAGAGAAAACCCTGAAACAGCTGTCCACGCCGTGTGGTGGGTCTaGGACTGGCTCTGCTGGGCC +
Preference number: 4 (lower is better)
Translates to: RILLGGVWVRENPETAVHAVWWV*DWLCWA
Trigger: GGCCCAGCAGAGCCAGTCTCAGACCCACCACACGGC...GTGGACAGCTGTTTCAGGGTTTTCTCTCACCCAAACTCCACCTAATAAAATCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp TTATTAGGTGGAGTTTGGGTGAGAGAAAACCCTGAAACAGCTGTCCACCTGGCTGGCAAGGTGGCAGTGTaGTGGGCTGAGGAGGGCAGA +
Preference number: 4 (lower is better)
Translates to: LLGGVWVRENPETAVHLAGKVAV*WAEEGR
Trigger: TCTGCCCTCCTCAGCCCAGCACACTGCCACCTTGCC...AGCCAGGTGGACAGCTGTTTCAGGGTTTTCTCTCACCCAAACTCCACCTAATAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp AGTGGGGCCTACTTGGCTATGGTAAGGGTGTCTGGACTGGGAGCACACACTTGTTGCCCAGGTGTGACATaGTTCTCTGCTGGAGCAGAT +
Preference number: 4 (lower is better)
Translates to: SGAYLAMVRVSGLGAHTCCPGVT*FSAGAD
Trigger: ATCTGCTCCAGCAGAGAACCATGTCACACCTGGGCA...ACAAGTGTGTGCTCCCAGTCCAGACACCCTTACCATAGCCAAGTAGGCCCCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp CACACCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGTTGGGCTGTGGTTGGTaGGCAGATACAATATTTTCA +
Preference number: 4 (lower is better)
Translates to: HTQQPTELGPHGRSEGRGLGCGW*ADTIFS
Trigger: TGAAAATATTGTATCTGCCCACCAACCACAGCCCAA...CCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGGTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp CACACCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGTGTTTGGGCTGTGGTTaGTGGGCAGATACAATATTT +
Preference number: 4 (lower is better)
Translates to: HTQQPTELGPHGRSEGRGCLGCG*WADTIF
Trigger: AAATATTGTATCTGCCCACCAACCACAGCCCAAACA...CCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGGTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp CACACCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGAATATGTTTGGGCTGTaGTTGGTGGGCAGATACAAT +
Preference number: 4 (lower is better)
Translates to: HTQQPTELGPHGRSEGRGNMFGL*LVGRYN
Trigger: ATTGTATCTGCCCACCAACCACAGCCCAAACATATT...CCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGGTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR CAA 72 bp TCCACCTGGCTCAGGACAACTGGGATGGGGGAGCCTTaGATTGCAGACAGGCTTTCACTGAGATGGATGGAA +
Preference number: 4 (lower is better)
Translates to: STWLRTTGMGEP*IADRLSLRWME
Trigger: TTCCATCCATCTCAGTGAAAGCCTGTCTGCAATCAAAGGCTCCCCCATCCCAGTTGTCCTGAGCCAGGTGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp AGTGGGGCCTACTTGGCTATGGTAAGGGTGTCTGGACTGGGAGCACACACTTGTATGTTTCAAAGGAGTTaGCTTCGGTGGCTTGGGTGG +
Preference number: 4 (lower is better)
Translates to: SGAYLAMVRVSGLGAHTCMFQRS*LRWLGW
Trigger: CCACCCAAGCCACCGAAGTCAACTCCTTTGAAACAT...ACAAGTGTGTGCTCCCAGTCCAGACACCCTTACCATAGCCAAGTAGGCCCCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp GAGAAAACCCTGAAACAGCTGTCCACCTGGCTCAGGACAACTGGGATGGGGGAGACGGATGACAAACTCTaGGGAGAATATGAGCTGGCA +
Preference number: 4 (lower is better)
Translates to: EKTLKQLSTWLRTTGMGETDDKL*GEYELA
Trigger: TGCCAGCTCATATTCTCCTCAGAGTTTGTCATCCGT...CTCCCCCATCCCAGTTGTCCTGAGCCAGGTGGACAGCTGTTTCAGGGTTTTCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp ACAGGGAATGAGATAAGTCGTGATTCTTCATTGGTACTGACCTGGCCCCAAACCCTGTCCCTCTGCCCCTaGCACGTCCAAATCCTCTGC +
Preference number: 4 (lower is better)
Translates to: TGNEISRDSSLVLTWPQTLSLCP*HVQILC
Trigger: GCAGAGGATTTGGACGTGGCAGGGGCAGAGGGACAG...GGTTTGGGGCCAGGTCAGTACCAATGAAGAATCACGACTTATCTCATTCCCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp TACTTGGCTATGGTAAGGGTGTCTGGACTGGGAGCACACACTTGTGTGCTACCCGGCAAGGGCTGTGGGTaGTGCAAAGGGAATTCCATA +
Preference number: 4 (lower is better)
Translates to: YLAMVRVSGLGAHTCVLPGKGCG*CKGNSI
Trigger: TATGGAATTCCCTTTGCAGCACCCACAGCCCTTGCC...GGGTAGCACACAAGTGTGTGCTCCCAGTCCAGACACCCTTACCATAGCCAAGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp TACTTGGCTATGGTAAGGGTGTCTGGACTGGGAGCACACACTTGTGTGCTACCCTGCCCAGGTGTGACATaGTTCTCTGCTGGAGCAGAT +
Preference number: 4 (lower is better)
Translates to: YLAMVRVSGLGAHTCVLPCPGVT*FSAGAD
Trigger: ATCTGCTCCAGCAGAGAACCATGTCACACCTGGGCA...GGGTAGCACACAAGTGTGTGCTCCCAGTCCAGACACCCTTACCATAGCCAAGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp TTATTAGGTGGAGTTTGGGTGAGAGAAAACCCTGAAACAGCTGTCCACCTGGCTAGCAGCAGTGGTGGCTaGGGGGCTCGCAGTGTCATT +
Preference number: 4 (lower is better)
Translates to: LLGGVWVRENPETAVHLASSSGG*GARSVI
Trigger: AATGACACTGCGAGCCCCCCAGCCACCACTGCTGCT...AGCCAGGTGGACAGCTGTTTCAGGGTTTTCTCTCACCCAAACTCCACCTAATAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp TTGGTACTGACCTGGCCCCAAACCACCAGTCCTTCAGTGGCACACCCAGCAGCCTTTGGTATGCAATCCTaGTATGCACAGAACTCTGGT +
Preference number: 4 (lower is better)
Translates to: LVLTWPQTTSPSVAHPAAFGMQS*YAQNSG
Trigger: ACCAGAGTTCTGTGCATACCAGGATTGCATACCAAA...GGCTGCTGGGTGTGCCACTGAAGGACTGGTGGTTTGGGGCCAGGTCAGTACCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp ACAGGGAATGAGATAAGTCGTGATTCTTCATTGGTACTGACCTGGCCCCAAACCCTGAGCTGGGGTCGTTaGAGGTGCAGGGGATGCAGA +
Preference number: 4 (lower is better)
Translates to: TGNEISRDSSLVLTWPQTLSWGR*RCRGCR
Trigger: TCTGCATCCCCTGCACCTCCAACGACCCCAGCTCAG...GGTTTGGGGCCAGGTCAGTACCAATGAAGAATCACGACTTATCTCATTCCCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp TTATTAGGTGGAGTTTGGGTGAGAGAAAACCCTGAAACAGCTGTCCACCTGGCTAGACGGCAGGCTGAATaGTGGAGGAGTCCCGGCATG +
Preference number: 4 (lower is better)
Translates to: LLGGVWVRENPETAVHLARRQAE*WRSPGM
Trigger: CATGCCGGGACTCCTCCACCATTCAGCCTGCCGTCT...AGCCAGGTGGACAGCTGTTTCAGGGTTTTCTCTCACCCAAACTCCACCTAATAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp AGGATTTTATTAGGTGGAGTTTGGGTGAGAGAAAACCCTGAAACAGCTGTCCACCAGGAGGAGGGACACTaGCGGCCTGGGTCTGGTGTT +
Preference number: 4 (lower is better)
Translates to: RILLGGVWVRENPETAVHQEEGH*RPGSGV
Trigger: AACACCAGACCCAGGCCGTCAGTGTCCCTCCTCCTG...GTGGACAGCTGTTTCAGGGTTTTCTCTCACCCAAACTCCACCTAATAAAATCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp ACAGGGAATGAGATAAGTCGTGATTCTTCATTGGTACTGACCTGGCCCCAAACCCAGCCCTGTGACATCTaGAGACCCGGGCATTTCCAC +
Preference number: 4 (lower is better)
Translates to: TGNEISRDSSLVLTWPQTQPCDI*RPGHFH
Trigger: GTGGAAATGCCCGGGTCTTCAGATGTCACAGGGCTG...GGTTTGGGGCCAGGTCAGTACCAATGAAGAATCACGACTTATCTCATTCCCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp CAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGACAGGCTGTCACTTCCATAAGCTaGTTAACTTTAGCTTCAAAA +
Preference number: 4 (lower is better)
Translates to: QSRTRPKAEALLCADGQAVTSIS*LTLASK
Trigger: TTTTGAAGCTAAAGTTAAGCAGCTTATGGAAGTGAC...AGCCTGTCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp TTGGTACTGACCTGGCCCCAAACCACCAGTCCTTCAGTGGCACACCCAGCAGCCGTCATGTTAGGAAGCTaGAAAAGTCTGCTAACAGTA +
Preference number: 4 (lower is better)
Translates to: LVLTWPQTTSPSVAHPAAVMLGS*KSLLTV
Trigger: TACTGTTAGCAGACTTTTGCAGCTTCCTAACATGAC...GGCTGCTGGGTGTGCCACTGAAGGACTGGTGGTTTGGGGCCAGGTCAGTACCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp ACAGGGAATGAGATAAGTCGTGATTCTTCATTGGTACTGACCTGGCCCCAAACCACAGGCTGCTCACAGTaGTCATGCTCCCAGGCAGGA +
Preference number: 4 (lower is better)
Translates to: TGNEISRDSSLVLTWPQTTGCSQ*SCSQAG
Trigger: TCCTGCCTGGGAGCATGAGCACTGTGAGCAGCCTGT...GGTTTGGGGCCAGGTCAGTACCAATGAAGAATCACGACTTATCTCATTCCCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp ACAGGGAATGAGATAAGTCGTGATTCTTCATTGGTACTGACCTGGCCCCAAACCTGGAGGTGCAGGGGATaGAGAGTCTCCTCGGCCAAA +
Preference number: 4 (lower is better)
Translates to: TGNEISRDSSLVLTWPQTWRCRG*RVSSAK
Trigger: TTTGGCCGAGGAGACTCTGCATCCCCTGCACCTCCA...GGTTTGGGGCCAGGTCAGTACCAATGAAGAATCACGACTTATCTCATTCCCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp ACAGGGAATGAGATAAGTCGTGATTCTTCATTGGTACTGACCTGGCCCCAAACCCTTGGTGTAGTCTCCTaGTGCCGTCCCCTGGGTCAA +
Preference number: 4 (lower is better)
Translates to: TGNEISRDSSLVLTWPQTLGVVS*CRPLGQ
Trigger: TTGACCCAGGGGACGGCAGCAGGAGACTACACCAAG...GGTTTGGGGCCAGGTCAGTACCAATGAAGAATCACGACTTATCTCATTCCCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp ACAGGGAATGAGATAAGTCGTGATTCTTCATTGGTACTGACCTGGCCCCAAACCTCCAGTATGGAGCGCTaGCGTAGGTGGGTTTGGAGG +
Preference number: 4 (lower is better)
Translates to: TGNEISRDSSLVLTWPQTSSMER*RRWVWR
Trigger: CCTCCAAACCCACCTACGGCAGCGCTCCATACTGGA...GGTTTGGGGCCAGGTCAGTACCAATGAAGAATCACGACTTATCTCATTCCCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp TTATTAGGTGGAGTTTGGGTGAGAGAAAACCCTGAAACAGCTGTCCACCTGGCTGTCATGCTGTTCTGGTaGCCAGAGAGGGAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: LLGGVWVRENPETAVHLAVMLFW*PERELL
Trigger: CAGCAGCTCCCTCTCTGGCCACCAGAACAGCATGAC...AGCCAGGTGGACAGCTGTTTCAGGGTTTTCTCTCACCCAAACTCCACCTAATAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp TTATTAGGTGGAGTTTGGGTGAGAGAAAACCCTGAAACAGCTGTCCACCTGGCTCGGCAGGCTGAATGGTaGAGGAGTCCCGGCATGAAA +
Preference number: 4 (lower is better)
Translates to: LLGGVWVRENPETAVHLARQAEW*RSPGMK
Trigger: TTTCATGCCGGGACTCCTCCACCATTCAGCCTGCCG...AGCCAGGTGGACAGCTGTTTCAGGGTTTTCTCTCACCCAAACTCCACCTAATAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp TTATTAGGTGGAGTTTGGGTGAGAGAAAACCCTGAAACAGCTGTCCACCTGGCTTGGAGGCTTGAGACTTaGGCTGAAGGGAGCTGGGCT +
Preference number: 4 (lower is better)
Translates to: LLGGVWVRENPETAVHLAWRLET*AEGSWA
Trigger: AGCCCAGCTCCCTTCAGCCCAAGTCTCAAGCCTCCA...AGCCAGGTGGACAGCTGTTTCAGGGTTTTCTCTCACCCAAACTCCACCTAATAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp AGTGGGGCCTACTTGGCTATGGTAAGGGTGTCTGGACTGGGAGCACACACTTGTTTCACCATGTTTGATTaGGGCAGCTCTCCAAATCCT +
Preference number: 4 (lower is better)
Translates to: SGAYLAMVRVSGLGAHTCFTMFD*GSSPNP
Trigger: AGGATTTGGAGAGCTGCCTCAATCAAACATGGTGAA...ACAAGTGTGTGCTCCCAGTCCAGACACCCTTACCATAGCCAAGTAGGCCCCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp ACAGGGAATGAGATAAGTCGTGATTCTTCATTGGTACTGACCTGGCCCCAAACCGCTGGCTCAACTGGCTaGGAACTGGAGATGGTTCAG +
Preference number: 4 (lower is better)
Translates to: TGNEISRDSSLVLTWPQTAGSTG*ELEMVQ
Trigger: CTGAACCATCTCCAGTTCTCAGCCAGTTGAGCCAGC...GGTTTGGGGCCAGGTCAGTACCAATGAAGAATCACGACTTATCTCATTCCCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp GACAGGCTTCTGCTGGACAGGGGTTATTTCTTCTGTTTCCAGATTAAGATTTGTCAGGAGGAGGGACACTaGCGGCCTGGGTCTGGTGTT +
Preference number: 4 (lower is better)
Translates to: DRLLLDRGYFFCFQIKICQEEGH*RPGSGV
Trigger: AACACCAGACCCAGGCCGTCAGTGTCCCTCCTCCTG...ACAAATCTTAATCTGGAAACAGAAGAAATAACCCCTGTCCAGCAGAAGCCTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp ACAGGGAATGAGATAAGTCGTGATTCTTCATTGGTACTGACCTGGCCCCAAACCGAACATTCAGCCCTGTaGCATCTGAAGACCCGGGCA +
Preference number: 4 (lower is better)
Translates to: TGNEISRDSSLVLTWPQTEHSAL*HLKTRA
Trigger: TGCCCGGGTCTTCAGATGTCACAGGGCTGAATGTTC...GGTTTGGGGCCAGGTCAGTACCAATGAAGAATCACGACTTATCTCATTCCCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp GACAGGCTTCTGCTGGACAGGGGTTATTTCTTCTGTTTCCAGATTAAGATTTGTCAGAGAGGGAGCTGCTaGGCTGAGAGAGAGGGCTGC +
Preference number: 4 (lower is better)
Translates to: DRLLLDRGYFFCFQIKICQRGSC*AEREGC
Trigger: GCAGCCCTCTCTCTCAGCTCAGCAGCTCCCTCTCTG...ACAAATCTTAATCTGGAAACAGAAGAAATAACCCCTGTCCAGCAGAAGCCTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp ACCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGGTCGTCACTTCCATAAGCTaGTTAACTTTAGCTTCAAAA +
Preference number: 4 (lower is better)
Translates to: TQQPTELGPHGRSEGRGVVTSIS*LTLASK
Trigger: TTTTGAAGCTAAAGTTAAGCAGCTTATGGAAGTGAC...GACCCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp GAGAAAACCCTGAAACAGCTGTCCACCTGGCTCAGGACAACTGGGATGGGGGAGCCAAAATCTGGGAGTTaGAGATGTTCACCATGTTTG +
Preference number: 4 (lower is better)
Translates to: EKTLKQLSTWLRTTGMGEPKSGS*RCSPCL
Trigger: CAAACATGGTGAACATCTCCAACTCCCAGATTTTGG...CTCCCCCATCCCAGTTGTCCTGAGCCAGGTGGACAGCTGTTTCAGGGTTTTCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp TACTTGGCTATGGTAAGGGTGTCTGGACTGGGAGCACACACTTGTGTGCTACCCTACAGCACTGGTCATTaGGAAAGAGGCATTCAAGGG +
Preference number: 4 (lower is better)
Translates to: YLAMVRVSGLGAHTCVLPYSTGH*ERGIQG
Trigger: CCCTTGAATGCCTCTTTCCCAATGACCAGTGCTGTA...GGGTAGCACACAAGTGTGTGCTCCCAGTCCAGACACCCTTACCATAGCCAAGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp ACAGGGAATGAGATAAGTCGTGATTCTTCATTGGTACTGACCTGGCCCCAAACCCATACTGGAAGGCACTaGGCACGCCTGTGTAGTAGG +
Preference number: 4 (lower is better)
Translates to: TGNEISRDSSLVLTWPQTHTGRH*ARLCSR
Trigger: CCTACTACACAGGCGTGCCCAGTGCCTTCCAGTATG...GGTTTGGGGCCAGGTCAGTACCAATGAAGAATCACGACTTATCTCATTCCCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp AGTGGGGCCTACTTGGCTATGGTAAGGGTGTCTGGACTGGGAGCACACACTTGTGAGCAGATGAAGCAGTaGATACCTTTGTTTCAGAGA +
Preference number: 4 (lower is better)
Translates to: SGAYLAMVRVSGLGAHTCEQMKQ*IPLFQR
Trigger: TCTCTGAAACAAAGGTATTCACTGCTTCATCTGCTC...ACAAGTGTGTGCTCCCAGTCCAGACACCCTTACCATAGCCAAGTAGGCCCCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp TTATTAGGTGGAGTTTGGGTGAGAGAAAACCCTGAAACAGCTGTCCACCTGGCTGGAGGAGTCCCGGCATaGAATCCCTGCTTGTCAAAA +
Preference number: 4 (lower is better)
Translates to: LLGGVWVRENPETAVHLAGGVPA*NPCLSK
Trigger: TTTTGACAAGCAGGGATTTCATGCCGGGACTCCTCC...AGCCAGGTGGACAGCTGTTTCAGGGTTTTCTCTCACCCAAACTCCACCTAATAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp ACAGGGAATGAGATAAGTCGTGATTCTTCATTGGTACTGACCTGGCCCCAAACCTGGCCAAAGCCCTGCTaGTGGGATGTTTCAAAGGAG +
Preference number: 4 (lower is better)
Translates to: TGNEISRDSSLVLTWPQTWPKPC*WDVSKE
Trigger: CTCCTTTGAAACATCCCAGCAGCAGGGCTTTGGCCA...GGTTTGGGGCCAGGTCAGTACCAATGAAGAATCACGACTTATCTCATTCCCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp ACAGGGAATGAGATAAGTCGTGATTCTTCATTGGTACTGACCTGGCCCCAAACCGCTTGGCCAAAGCCCTaGTGCTGGGATGTTTCAAAG +
Preference number: 4 (lower is better)
Translates to: TGNEISRDSSLVLTWPQTAWPKP*CWDVSK
Trigger: CTTTGAAACATCCCAGCAGCAGGGCTTTGGCCAAGC...GGTTTGGGGCCAGGTCAGTACCAATGAAGAATCACGACTTATCTCATTCCCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp AGGATTTTATTAGGTGGAGTTTGGGTGAGAGAAAACCCTGAAACAGCTGTCCACTGGAGGTGCAGGGGATaGAGAGTCTCCTCGGCCAAA +
Preference number: 4 (lower is better)
Translates to: RILLGGVWVRENPETAVHWRCRG*RVSSAK
Trigger: TTTGGCCGAGGAGACTCTGCATCCCCTGCACCTCCA...GTGGACAGCTGTTTCAGGGTTTTCTCTCACCCAAACTCCACCTAATAAAATCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp TTATTAGGTGGAGTTTGGGTGAGAGAAAACCCTGAAACAGCTGTCCACCTGGCTTGCTGTTGGCATCTGTaGTTTTTCCCGAGCACCTCG +
Preference number: 4 (lower is better)
Translates to: LLGGVWVRENPETAVHLACCWHL*FFPSTS
Trigger: CGAGGTGCTCGGGAAAAACCACAGATGCCAACAGCA...AGCCAGGTGGACAGCTGTTTCAGGGTTTTCTCTCACCCAAACTCCACCTAATAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp AGTGGGGCCTACTTGGCTATGGTAAGGGTGTCTGGACTGGGAGCACACACTTGTCCAAAATCTGGGAGTTaGAGATGTTCACCATGTTTG +
Preference number: 4 (lower is better)
Translates to: SGAYLAMVRVSGLGAHTCPKSGS*RCSPCL
Trigger: CAAACATGGTGAACATCTCCAACTCCCAGATTTTGG...ACAAGTGTGTGCTCCCAGTCCAGACACCCTTACCATAGCCAAGTAGGCCCCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp AGTGGGGCCTACTTGGCTATGGTAAGGGTGTCTGGACTGGGAGCACACACTTGTAACTTGTCCAAAATCTaGGAGTTGGAGATGTTCACC +
Preference number: 4 (lower is better)
Translates to: SGAYLAMVRVSGLGAHTCNLSKI*ELEMFT
Trigger: GGTGAACATCTCCAACTCCCAGATTTTGGACAAGTT...ACAAGTGTGTGCTCCCAGTCCAGACACCCTTACCATAGCCAAGTAGGCCCCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp AGGATTTTATTAGGTGGAGTTTGGGTGAGAGAAAACCCTGAAACAGCTGTCCACGAGGTCATGCTGTTCTaGTGGCCAGAGAGGGAGCTG +
Preference number: 4 (lower is better)
Translates to: RILLGGVWVRENPETAVHEVMLF*WPEREL
Trigger: CAGCTCCCTCTCTGGCCACCAGAACAGCATGACCTC...GTGGACAGCTGTTTCAGGGTTTTCTCTCACCCAAACTCCACCTAATAAAATCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp AGGATTTTATTAGGTGGAGTTTGGGTGAGAGAAAACCCTGAAACAGCTGTCCACGAGCGCTGCCGTAGGTaGGTTTGGAGGCTTGAGACT +
Preference number: 4 (lower is better)
Translates to: RILLGGVWVRENPETAVHERCRR*VWRLET
Trigger: AGTCTCAAGCCTCCAAACCCACCTACGGCAGCGCTC...GTGGACAGCTGTTTCAGGGTTTTCTCTCACCCAAACTCCACCTAATAAAATCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp GACAGGCTTCTGCTGGACAGGGGTTATTTCTTCTGTTTCCAGATTAAGATTTGTTGCTGTGCCCAGGTGTaGCATGGTTCTCTGCTGGAG +
Preference number: 4 (lower is better)
Translates to: DRLLLDRGYFFCFQIKICCCAQV*HGSLLE
Trigger: CTCCAGCAGAGAACCATGTCACACCTGGGCACAGCA...ACAAATCTTAATCTGGAAACAGAAGAAATAACCCCTGTCCAGCAGAAGCCTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp AGGATTTTATTAGGTGGAGTTTGGGTGAGAGAAAACCCTGAAACAGCTGTCCACGCTGGCTCAACTGGCTaGGAACTGGAGATGGTTCAG +
Preference number: 4 (lower is better)
Translates to: RILLGGVWVRENPETAVHAGSTG*ELEMVQ
Trigger: CTGAACCATCTCCAGTTCTCAGCCAGTTGAGCCAGC...GTGGACAGCTGTTTCAGGGTTTTCTCTCACCCAAACTCCACCTAATAAAATCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp ACAGGGAATGAGATAAGTCGTGATTCTTCATTGGTACTGACCTGGCCCCAAACCTGCTCAGCTGTTGCCTaGACCACTTGTTTCTGTGAC +
Preference number: 4 (lower is better)
Translates to: TGNEISRDSSLVLTWPQTCSAVA*TTCFCD
Trigger: GTCACAGAAACAAGTGGTGCAGGCAACAGCTGAGCA...GGTTTGGGGCCAGGTCAGTACCAATGAAGAATCACGACTTATCTCATTCCCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp GACAGGCTTCTGCTGGACAGGGGTTATTTCTTCTGTTTCCAGATTAAGATTTGTGCTGAGAGAGAGGGCTaGTGGACAGTTCAGCAGCAG +
Preference number: 4 (lower is better)
Translates to: DRLLLDRGYFFCFQIKICAEREG*WTVQQQ
Trigger: CTGCTGCTGAACTGTCCAGCAGCCCTCTCTCTCAGC...ACAAATCTTAATCTGGAAACAGAAGAAATAACCCCTGTCCAGCAGAAGCCTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp GACAGGCTTCTGCTGGACAGGGGTTATTTCTTCTGTTTCCAGATTAAGATTTGTTCCAGTATGGAGCGCTaGCGTAGGTGGGTTTGGAGG +
Preference number: 4 (lower is better)
Translates to: DRLLLDRGYFFCFQIKICSSMER*RRWVWR
Trigger: CCTCCAAACCCACCTACGGCAGCGCTCCATACTGGA...ACAAATCTTAATCTGGAAACAGAAGAAATAACCCCTGTCCAGCAGAAGCCTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp TACTTGGCTATGGTAAGGGTGTCTGGACTGGGAGCACACACTTGTGTGCTACCCTGTTTGGGCTGTGGTTaGTGGGCAGATACAATATTT +
Preference number: 4 (lower is better)
Translates to: YLAMVRVSGLGAHTCVLPCLGCG*WADTIF
Trigger: AAATATTGTATCTGCCCACCAACCACAGCCCAAACA...GGGTAGCACACAAGTGTGTGCTCCCAGTCCAGACACCCTTACCATAGCCAAGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp AGTGGGGCCTACTTGGCTATGGTAAGGGTGTCTGGACTGGGAGCACACACTTGTGATTACTATTTTCACTaGCTGAAGCTGCTGATCCAA +
Preference number: 4 (lower is better)
Translates to: SGAYLAMVRVSGLGAHTCDYYFH*LKLLIQ
Trigger: TTGGATCAGCAGCTTCAGCCAGTGAAAATAGTAATC...ACAAGTGTGTGCTCCCAGTCCAGACACCCTTACCATAGCCAAGTAGGCCCCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp AGGATTTTATTAGGTGGAGTTTGGGTGAGAGAAAACCCTGAAACAGCTGTCCACATAGTAGGCCCATACTaGAAGGCACTGGGCACGCCT +
Preference number: 4 (lower is better)
Translates to: RILLGGVWVRENPETAVHIVGPY*KALGTP
Trigger: AGGCGTGCCCAGTGCCTTCCAGTATGGGCCTACTAT...GTGGACAGCTGTTTCAGGGTTTTCTCTCACCCAAACTCCACCTAATAAAATCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
3UTR CAA 72 bp TGGTTCACAGGGAATGAGATAAGTCGTGATTCTTCATaGGTACTGACCTGGCCCCAAACCACCAGTCCTTCA +
Preference number: 4 (lower is better)
Translates to: WFTGNEISRDSS*VLTWPQTTSPS
Trigger: TGAAGGACTGGTGGTTTGGGGCCAGGTCAGTACCAATGAAGAATCACGACTTATCTCATTCCCTGTGAACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp TTATTAGGTGGAGTTTGGGTGAGAGAAAACCCTGAAACAGCTGTCCACCTGGCTACGGATGACAAACTCTaGGGAGAATATGAGCTGGCA +
Preference number: 4 (lower is better)
Translates to: LLGGVWVRENPETAVHLATDDKL*GEYELA
Trigger: TGCCAGCTCATATTCTCCTCAGAGTTTGTCATCCGT...AGCCAGGTGGACAGCTGTTTCAGGGTTTTCTCTCACCCAAACTCCACCTAATAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp AGGATTTTATTAGGTGGAGTTTGGGTGAGAGAAAACCCTGAAACAGCTGTCCACAGCAGCTTCCCAAACTaGCAACTTTGTCCCACAGCC +
Preference number: 4 (lower is better)
Translates to: RILLGGVWVRENPETAVHSSFPN*QLCPTA
Trigger: GGCTGTGGGACAAAGTTGGCAGTTTGGGAAGCTGCT...GTGGACAGCTGTTTCAGGGTTTTCTCTCACCCAAACTCCACCTAATAAAATCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp GACAGGCTTCTGCTGGACAGGGGTTATTTCTTCTGTTTCCAGATTAAGATTTGTCCCGGGCATTTCCACTaGGGACACAGGAACCTTAGA +
Preference number: 4 (lower is better)
Translates to: DRLLLDRGYFFCFQIKICPGHFH*GHRNLR
Trigger: TCTAAGGTTCCTGTGTCCGCAGTGGAAATGCCCGGG...ACAAATCTTAATCTGGAAACAGAAGAAATAACCCCTGTCCAGCAGAAGCCTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp AGGATTTTATTAGGTGGAGTTTGGGTGAGAGAAAACCCTGAAACAGCTGTCCACTGGAGCTGGAACGGATaGAGTAGTGTCTACTGTGTG +
Preference number: 4 (lower is better)
Translates to: RILLGGVWVRENPETAVHWSWNG*SSVYCV
Trigger: CACACAGTAGACACTACTTCATCCGTTCCAGCTCCA...GTGGACAGCTGTTTCAGGGTTTTCTCTCACCCAAACTCCACCTAATAAAATCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp GACAGGCTTCTGCTGGACAGGGGTTATTTCTTCTGTTTCCAGATTAAGATTTGTAGCAGCTTCCCAAACTaGCAACTTTGTCCCACAGCC +
Preference number: 4 (lower is better)
Translates to: DRLLLDRGYFFCFQIKICSSFPN*QLCPTA
Trigger: GGCTGTGGGACAAAGTTGGCAGTTTGGGAAGCTGCT...ACAAATCTTAATCTGGAAACAGAAGAAATAACCCCTGTCCAGCAGAAGCCTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp GACAGGCTTCTGCTGGACAGGGGTTATTTCTTCTGTTTCCAGATTAAGATTTGTTGGCCAAAGCCCTGCTaGTGGGATGTTTCAAAGGAG +
Preference number: 4 (lower is better)
Translates to: DRLLLDRGYFFCFQIKICWPKPC*WDVSKE
Trigger: CTCCTTTGAAACATCCCAGCAGCAGGGCTTTGGCCA...ACAAATCTTAATCTGGAAACAGAAGAAATAACCCCTGTCCAGCAGAAGCCTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp GACAGGCTTCTGCTGGACAGGGGTTATTTCTTCTGTTTCCAGATTAAGATTTGTGCTCACAGATGGGAGTaGGGAAGGGTCTGTCTTCTT +
Preference number: 4 (lower is better)
Translates to: DRLLLDRGYFFCFQIKICAHRWE*GRVCLL
Trigger: AAGAAGACAGACCCTTCCGCACTCCCATCTGTGAGC...ACAAATCTTAATCTGGAAACAGAAGAAATAACCCCTGTCCAGCAGAAGCCTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR GCA 90 bp GACAGGCTTCTGCTGGACAGGGGTTATTTCTTCTGTTTCCAGATTAAGATTTGTATTGGCAGCCGTGACTaGAGCATCTGGAGCTCATCA +
Preference number: 4 (lower is better)
Translates to: DRLLLDRGYFFCFQIKICIGSRD*SIWSSS
Trigger: TGATGAGCTCCAGATGCTGCAGTCACGGCTGCCAAT...ACAAATCTTAATCTGGAAACAGAAGAAATAACCCCTGTCCAGCAGAAGCCTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp GACAGGCTTCTGCTGGACAGGGGTTATTTCTTCTGTTTCCAGATTAAGATTTGTATGAGCTGGCAGAAGTaGAGTTTGCAGTCCCTGGTG +
Preference number: 4 (lower is better)
Translates to: DRLLLDRGYFFCFQIKICMSWQK*SLQSLV
Trigger: CACCAGGGACTGCAAACTCCACTTCTGCCAGCTCAT...ACAAATCTTAATCTGGAAACAGAAGAAATAACCCCTGTCCAGCAGAAGCCTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CCA 90 bp TTATTAGGTGGAGTTTGGGTGAGAGAAAACCCTGAAACAGCTGTCCACCTGGCTTTTGGTATGCAATCCTaGTATGCACAGAACTCTGGT +
Preference number: 4 (lower is better)
Translates to: LLGGVWVRENPETAVHLAFGMQS*YAQNSG
Trigger: ACCAGAGTTCTGTGCATACCAGGATTGCATACCAAA...AGCCAGGTGGACAGCTGTTTCAGGGTTTTCTCTCACCCAAACTCCACCTAATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR TCA 90 bp GACAGGCTTCTGCTGGACAGGGGTTATTTCTTCTGTTTCCAGATTAAGATTTGTCTCTGCTGGAGCAGATaGAGCAGTGAATACCTTTGT +
Preference number: 4 (lower is better)
Translates to: DRLLLDRGYFFCFQIKICLCWSR*SSEYLC
Trigger: ACAAAGGTATTCACTGCTTCATCTGCTCCAGCAGAG...ACAAATCTTAATCTGGAAACAGAAGAAATAACCCCTGTCCAGCAGAAGCCTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp ACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCCCACCCCCCCTGAGCTGGGGTCGTaGGAGGTGCAGGGGATGCAG +
Preference number: 5 (lower is better)
Translates to: TGLQEGAPCVPSCPEPTPPELGS*EVQGMQ
Trigger: CTGCATCCCCTGCACCTCCAACGACCCCAGCTCAGG...GGGGGTGGGCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGT
68% GC, longest homopolymer 7 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CCA 90 bp GGCTGCTGGACAGTTCAGCAGCAGCCGGGGTCAGGGAGGGCAAGGTaGCAGTGTGCTGGGCTGAGGAGGGCAGAAGTGCAGTGCAGGAGG +
Preference number: 5 (lower is better)
Translates to: GCWTVQQQPGSGRAR*QCAGLRRAEVQCRR
Trigger: CCTCCTGCACTGCACTTCTGCCCTCCTCAGCCCAGCACACTGCCACCTTGCCCTCCCTGACCCCGGCTGCTGCTGAACTGTCCAGCAGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp ACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCCCACCCCCGTGGGAGGAGCAGGCTaGTGGAGCAAGGCCACCAGA +
Preference number: 5 (lower is better)
Translates to: TGLQEGAPCVPSCPEPTPVGGAG*WSKATR
Trigger: TCTGGTGGCCTTGCTCCACAAGCCTGCTCCTCCCAC...GGGGGTGGGCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp AGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGACTGAGGACGGGGCACTaGGAGCAGAGGTCGCCGCTG +
Preference number: 5 (lower is better)
Translates to: SPQSRTRPKAEALLCADGLRTGH*EQRSPL
Trigger: CAGCGGCGACCTCTGCTCCAAGTGCCCCGTCCTCAG...TCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp CAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGACAGGCTCTGAGGACGGGGCACTaGGAGCAGAGGTCGCCGCTG +
Preference number: 5 (lower is better)
Translates to: QSRTRPKAEALLCADGQALRTGH*EQRSPL
Trigger: CAGCGGCGACCTCTGCTCCAAGTGCCCCGTCCTCAG...AGCCTGTCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp CAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCCCCTGAGCTGGGGTCGTaGGAGGTGCAGGGGATGCAG +
Preference number: 5 (lower is better)
Translates to: QGHGAPGRCSMCSLLPRAPELGS*EVQGMQ
Trigger: CTGCATCCCCTGCACCTCCAACGACCCCAGCTCAGG...GGCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS GCA 90 bp TCCCTCTGCCCCTGCCACGTCCAAATCCTCTGCCTCGGGCCCGCTTaGCCCGCTCCGCAGGCTTGTCTCCTTGGCTGCAGTCAATCCCAT +
Preference number: 5 (lower is better)
Translates to: SLCPCHVQILCLGPA*PAPQACLLGCSQSH
Trigger: ATGGGATTGACTGCAGCCAAGGAGACAAGCCTGCGGAGCGGGGCAAGCGGGCCCGAGGCAGAGGATTTGGACGTGGCAGGGGCAGAGGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000134782.2
CDS-3UTR CAA 90 bp ACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCCCACCCCCGTTGACTTCGGTGGCTaGGGTGGGAGGAGCAGGCTT +
Preference number: 5 (lower is better)
Translates to: TGLQEGAPCVPSCPEPTPVDFGG*GGRSRL
Trigger: AAGCCTGCTCCTCCCACCCAAGCCACCGAAGTCAAC...GGGGGTGGGCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CCA 90 bp TGCCGTAGGTGGGTTTGGAGGCTTGAGACTTGGGCTGAAGGGAGCTaGGCTGGCTGCGCTGACCAGAGCCGCTCGGGGCATCCTGCTGTA +
Preference number: 5 (lower is better)
Translates to: CRRWVWRLETWAEGS*AGCADQSRSGHPAV
Trigger: TACAGCAGGATGCCCCGAGCGGCTCTGGTCAGCGCAGCCAGCCCAGCTCCCTTCAGCCCAAGTCTCAAGCCTCCAAACCCACCTACGGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp GTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGACCTTCCCTTGCGGTTGTaGGTTCCCCGTCCACGACTC +
Preference number: 5 (lower is better)
Translates to: VPRAGPDPKRKPCCAQTDLPLRL*VPRPRL
Trigger: GAGTCGTGGACGGGGAACCAACAACCGCAAGGGAAG...GTCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp ACCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGGTCCCCCGCTCCGCAGGCTaGTCTCCTTGGCTGCAGTCA +
Preference number: 5 (lower is better)
Translates to: TQQPTELGPHGRSEGRGVPRSAG*SPWLQS
Trigger: TGACTGCAGCCAAGGAGACAAGCCTGCGGAGCGGGG...GACCCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp CAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGACAGGCTGGCCTGGGTCTGGTGTaGCTGTCGCTGGCTCAACTG +
Preference number: 5 (lower is better)
Translates to: QSRTRPKAEALLCADGQAGLGLV*LSLAQL
Trigger: CAGTTGAGCCAGCGACAGCAACACCAGACCCAGGCC...AGCCTGTCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS TCA 90 bp GCAGAGGTCATGCTGTTCTGGTGGCCAGAGAGGGAGCTGCTGAGCTaGGAGAGAGGGCTGCTGGACAGTTCAGCAGCAGCCGGGGTCAGG +
Preference number: 5 (lower is better)
Translates to: AEVMLFWWPERELLS*ERGLLDSSAAAGVR
Trigger: CCTGACCCCGGCTGCTGCTGAACTGTCCAGCAGCCCTCTCTCTCAGCTCAGCAGCTCCCTCTCTGGCCACCAGAACAGCATGACCTCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp AGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGATTGCCGCCTCTTCCCTaGCGGTTGTTGGTTCCCCGT +
Preference number: 5 (lower is better)
Translates to: SPQSRTRPKAEALLCADGLPPLP*RLLVPR
Trigger: ACGGGGAACCAACAACCGCAAGGGAAGAGGCGGCAA...TCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp CAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCCTGTGAAGACAAGGGCTaGGCCAAAGCCCTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: QGHGAPGRCSMCSLLPRACEDKG*AKALLL
Trigger: CAGCAGCAGGGCTTTGGCCAAGCCCTTGTCTTCACA...GGCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp CACACCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGGGCCTGGGTCTGGTGTaGCTGTCGCTGGCTCAACTG +
Preference number: 5 (lower is better)
Translates to: HTQQPTELGPHGRSEGRGGLGLV*LSLAQL
Trigger: CAGTTGAGCCAGCGACAGCAACACCAGACCCAGGCC...CCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGGTGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS GCA 90 bp GCCTGCTGGAAAGGGGTCGGGGGAGTGCTGAGGGCCACACCGTGCTaGTTCGCTGAGGTTGGAGGGACAAACATAGTAGGCCCATACTGG +
Preference number: 5 (lower is better)
Translates to: ACWKGVGGVLRATPC*FAEVGGTNIVGPYW
Trigger: CCAGTATGGGCCTACTATGTTTGTCCCTCCAACCTCAGCGAAGCAGCACGGTGTGGCCCTCAGCACTCCCCCGACCCCTTTCCAGCAGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS GCA 90 bp CTGGCCTGCTGGAAAGGGGTCGGGGGAGTGCTGAGGGCCACACCGTaGTGCTTCGCTGAGGTTGGAGGGACAAACATAGTAGGCCCATAC +
Preference number: 5 (lower is better)
Translates to: LACWKGVGGVLRATP*CFAEVGGTNIVGPY
Trigger: GTATGGGCCTACTATGTTTGTCCCTCCAACCTCAGCGAAGCAGCACGGTGTGGCCCTCAGCACTCCCCCGACCCCTTTCCAGCAGGCCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp CCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGGTCGGGGCTGCGTGTGCTGTaGGCATCTGTGGTTTTTCCC +
Preference number: 5 (lower is better)
Translates to: PSSPLSWGHMEDLKAEGSGLRVL*ASVVFP
Trigger: GGGAAAAACCACAGATGCCAACAGCACACGCAGCCC...CGACCCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp ACCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGGTCTTGCCGCCTCTTCCCTaGCGGTTGTTGGTTCCCCGT +
Preference number: 5 (lower is better)
Translates to: TQQPTELGPHGRSEGRGVLPPLP*RLLVPR
Trigger: ACGGGGAACCAACAACCGCAAGGGAAGAGGCGGCAA...GACCCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp TCTCAGGATCCCAGCAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCGGGCTGCGTGTGCTGTaGGCATCTGTGGTTTTTCCC +
Preference number: 5 (lower is better)
Translates to: SQDPSKGTGLQEGAPCVPGLRVL*ASVVFP
Trigger: GGGAAAAACCACAGATGCCAACAGCACACGCAGCCC...GGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTGCTGGGATCCTGAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp TTGGTACTGACCTGGCCCCAAACCACCAGTCCTTCAGTGGCACACCCAGCAGCCCTTCCCTTGCGGTTGTaGGTTCCCCGTCCACGACTC +
Preference number: 5 (lower is better)
Translates to: LVLTWPQTTSPSVAHPAALPLRL*VPRPRL
Trigger: GAGTCGTGGACGGGGAACCAACAACCGCAAGGGAAG...GGCTGCTGGGTGTGCCACTGAAGGACTGGTGGTTTGGGGCCAGGTCAGTACCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp ACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCCCACCCCCCCATTCTCTTCACCTTaGAACTCTCGGACTCGGTTG +
Preference number: 5 (lower is better)
Translates to: TGLQEGAPCVPSCPEPTPPFSSP*NSRTRL
Trigger: CAACCGAGTCCGAGAGTTCAAAGGTGAAGAGAATGG...GGGGGTGGGCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGT
61% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp TCTCAGGATCCCAGCAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTGTGAAGACAAGGGCTaGGCCAAAGCCCTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: SQDPSKGTGLQEGAPCVPCEDKG*AKALLL
Trigger: CAGCAGCAGGGCTTTGGCCAAGCCCTTGTCTTCACA...GGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTGCTGGGATCCTGAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp GACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACATTCTGCTGTGCGCTaGAAGCAGCGGGAAATGGGC +
Preference number: 5 (lower is better)
Translates to: DKSPEQDQTQSGSPAVRRHSAVR*KQREMG
Trigger: GCCCATTTCCCGCTGCTTCAAGCGCACAGCAGAATG...TCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp TCTCAGGATCCCAGCAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCCATTCTGCTGTGCGCTaGAAGCAGCGGGAAATGGGC +
Preference number: 5 (lower is better)
Translates to: SQDPSKGTGLQEGAPCVPHSAVR*KQREMG
Trigger: GCCCATTTCCCGCTGCTTCAAGCGCACAGCAGAATG...GGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTGCTGGGATCCTGAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp ACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGTGGGTTTGGAGGCTaGAGACTTGGGCTGAAGGGA +
Preference number: 5 (lower is better)
Translates to: TSPQSRTRPKAEALLCADGGFGG*RLGLKG
Trigger: TCCCTTCAGCCCAAGTCTCAAGCCTCCAAACCCACC...GTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CCA 90 bp AGGATGCGGTGCTCTCCACGCTGGCATGAGTGTGTGGCGTGCTTGTaGAACGTGTCGCATGTGCAGAGGTCATGCTGTTCTGGTGGCCAG +
Preference number: 5 (lower is better)
Translates to: RMRCSPRWHECVACL*NVSHVQRSCCSGGQ
Trigger: CTGGCCACCAGAACAGCATGACCTCTGCACATGCGACACGTTCCACAAGCACGCCACACACTCATGCCAGCGTGGAGAGCACCGCATCCT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp ACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCCCACCCCCCTTATCAAAGATCACTaGAGCAAGCCGCATCTGCTC +
Preference number: 5 (lower is better)
Translates to: TGLQEGAPCVPSCPEPTPLIKDH*SKPHLL
Trigger: GAGCAGATGCGGCTTGCTCAAGTGATCTTTGATAAG...GGGGGTGGGCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGT
60% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp ACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACCGCAGGCTTGTCTCCTaGGCTGCAGTCAATCCCATT +
Preference number: 5 (lower is better)
Translates to: TSPQSRTRPKAEALLCADRRLVS*AAVNPI
Trigger: AATGGGATTGACTGCAGCCAAGGAGACAAGCCTGCG...GTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp GAGAAAACCCTGAAACAGCTGTCCACCTGGCTCAGGACAACTGGGATGGGGGAGGTGGGAGGAGCAGGCTaGTGGAGCAAGGCCACCAGA +
Preference number: 5 (lower is better)
Translates to: EKTLKQLSTWLRTTGMGEVGGAG*WSKATR
Trigger: TCTGGTGGCCTTGCTCCACAAGCCTGCTCCTCCCAC...CTCCCCCATCCCAGTTGTCCTGAGCCAGGTGGACAGCTGTTTCAGGGTTTTCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp GCAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCTCCTGCCCAGAGCAAGGGTCTGTCTTCTTaGGAGCTGGAACGGATGAAG +
Preference number: 5 (lower is better)
Translates to: ARARGSRKVLHVFPPAQSKGLSS*ELERMK
Trigger: CTTCATCCGTTCCAGCTCCAAAGAAGACAGACCCTT...GCTCTGGGCAGGAGGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp ACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGATACTGACACTCCTTaGCCAGGCCCAGAACCAGTC +
Preference number: 5 (lower is better)
Translates to: TSPQSRTRPKAEALLCADDTDTP*PGPEPV
Trigger: GACTGGTTCTGGGCCTGGCAAAGGAGTGTCAGTATC...GTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS TCA 90 bp CAAGGGCTTGGCCAAAGCCCTGCTGCTGGGATGTTTCAAAGGAGTTaGCTTCGGTGGCTTGGGTGGGAGGAGCAGGCTTGTGGAGCAAGG +
Preference number: 5 (lower is better)
Translates to: QGLGQSPAAGMFQRS*LRWLGWEEQACGAR
Trigger: CCTTGCTCCACAAGCCTGCTCCTCCCACCCAAGCCACCGAAGTCAACTCCTTTGAAACATCCCAGCAGCAGGGCTTTGGCCAAGCCCTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000135323.2
CDS-3UTR CAA 90 bp AAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGCCATTCTCTTCACCTTaGAACTCTCGGACTCGGTTG +
Preference number: 5 (lower is better)
Translates to: KSPEQDQTQSGSPAVRRRPFSSP*NSRTRL
Trigger: CAACCGAGTCCGAGAGTTCAAAGGTGAAGAGAATGG...CCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp TACTTGGCTATGGTAAGGGTGTCTGGACTGGGAGCACACACTTGTGTGCTACCCCCCCGCTCCGCAGGCTaGTCTCCTTGGCTGCAGTCA +
Preference number: 5 (lower is better)
Translates to: YLAMVRVSGLGAHTCVLPPRSAG*SPWLQS
Trigger: TGACTGCAGCCAAGGAGACAAGCCTGCGGAGCGGGG...GGGTAGCACACAAGTGTGTGCTCCCAGTCCAGACACCCTTACCATAGCCAAGTA
59% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp CCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGGTCGTTCCATAGTAATCCATaGGCAGCCGTGACTGCAGCA +
Preference number: 5 (lower is better)
Translates to: PSSPLSWGHMEDLKAEGSFHSNP*AAVTAA
Trigger: TGCTGCAGTCACGGCTGCCAATGGATTACTATGGAA...CGACCCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp TTGGTACTGACCTGGCCCCAAACCACCAGTCCTTCAGTGGCACACCCAGCAGCCGATACTGACACTCCTTaGCCAGGCCCAGAACCAGTC +
Preference number: 5 (lower is better)
Translates to: LVLTWPQTTSPSVAHPAADTDTP*PGPEPV
Trigger: GACTGGTTCTGGGCCTGGCAAAGGAGTGTCAGTATC...GGCTGCTGGGTGTGCCACTGAAGGACTGGTGGTTTGGGGCCAGGTCAGTACCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS TCA 90 bp TCCTTTGCCAGGCCCAGAACCAGTCGACTTGTTTGGTGCCTGAGATaGTCCACCATAGCCACCCTTGGTGTAGTCTCCTGCTGCCGTCCC +
Preference number: 5 (lower is better)
Translates to: SFARPRTSRLVWCLR*STIATLGVVSCCRP
Trigger: GGGACGGCAGCAGGAGACTACACCAAGGGTGGCTATGGTGGATCATCTCAGGCACCAAACAAGTCGACTGGTTCTGGGCCTGGCAAAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CCA 90 bp TCAAAGGAGTTGACTTCGGTGGCTTGGGTGGGAGGAGCAGGCTTGTaGAGCAAGGCCACCAGATCAATGCTGTGCCCAGGTGTGACATGG +
Preference number: 5 (lower is better)
Translates to: SKELTSVAWVGGAGL*SKATRSMLCPGVTW
Trigger: CCATGTCACACCTGGGCACAGCATTGATCTGGTGGCCTTGCTCCACAAGCCTGCTCCTCCCACCCAAGCCACCGAAGTCAACTCCTTTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CCA 90 bp GAAAAGGACTCCAAACCAGGAGGAGGGACACTGACGGCCTGGGTCTaGTGTTGCTGTCGCTGGCTCAACTGGCTGAGAACTGGAGATGGT +
Preference number: 5 (lower is better)
Translates to: EKDSKPGGGTLTAWV*CCCRWLNWLRTGDG
Trigger: ACCATCTCCAGTTCTCAGCCAGTTGAGCCAGCGACAGCAACACCAGACCCAGGCCGTCAGTGTCCCTCCTCCTGGTTTGGAGTCCTTTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000135323.2
CDS-3UTR CAA 90 bp AGACAAGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGGATGTTTCAAAGGAGTaGACTTCGGTGGCTTGGGTG +
Preference number: 5 (lower is better)
Translates to: RQVPRAGPDPKRKPCCAQDVSKE*TSVAWV
Trigger: CACCCAAGCCACCGAAGTCAACTCCTTTGAAACATC...CTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACTTGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp CACACCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGAAGGGTCTGTCTTCTTaGGAGCTGGAACGGATGAAG +
Preference number: 5 (lower is better)
Translates to: HTQQPTELGPHGRSEGRGKGLSS*ELERMK
Trigger: CTTCATCCGTTCCAGCTCCAAAGAAGACAGACCCTT...CCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGGTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS TCA 90 bp TGCTGTCGCTGGCTCAACTGGCTGAGAACTGGAGATGGTTCAGGCTaGGATTTGAAGTCCAAACGACTGAGGACTGAGGGTTGGGGCGCC +
Preference number: 5 (lower is better)
Translates to: CCRWLNWLRTGDGSG*DLKSKRLRTEGWGA
Trigger: GGCGCCCCAACCCTCAGTCCTCAGTCGTTTGGACTTCAAATCTCAGCCTGAACCATCTCCAGTTCTCAGCCAGTTGAGCCAGCGACAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000135323.2
CDS CCA 90 bp AGCCGCATCTGCTCAGCTGTTGCCTGCACCACTTGTTTCTGTGACTaGGCTGCGTGTGCTGTTGGCATCTGTGGTTTTTCCCGAGCACCT +
Preference number: 5 (lower is better)
Translates to: SRICSAVACTTCFCD*AACAVGICGFSRAP
Trigger: AGGTGCTCGGGAAAAACCACAGATGCCAACAGCACACGCAGCCCAGTCACAGAAACAAGTGGTGCAGGCAACAGCTGAGCAGATGCGGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CCA 90 bp AAGCCCTGCTGCTGGGATGTTTCAAAGGAGTTGACTTCGGTGGCTTaGGTGGGAGGAGCAGGCTTGTGGAGCAAGGCCACCAGATCAATG +
Preference number: 5 (lower is better)
Translates to: KPCCWDVSKELTSVA*VGGAGLWSKATRSM
Trigger: CATTGATCTGGTGGCCTTGCTCCACAAGCCTGCTCCTCCCACCCAAGCCACCGAAGTCAACTCCTTTGAAACATCCCAGCAGCAGGGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000135323.2
CDS-3UTR CAA 90 bp TCTCAGGATCCCAGCAAGGGCACGGGGCTCCAGGAAGGTGCTCCATGTGTTCCCCAGTCCAGTCTTCTGTaGTCCACTCTTCCACAGAAT +
Preference number: 5 (lower is better)
Translates to: SQDPSKGTGLQEGAPCVPQSSLL*STLPQN
Trigger: ATTCTGTGGAAGAGTGGACAACAGAAGACTGGACTG...GGGAACACATGGAGCACCTTCCTGGAGCCCCGTGCCCTTGCTGGGATCCTGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp ACCCAGCAGCCCACTGAGCTGGGGCCACATGGAAGATCTGAAGGCAGAGGGGTCCAGTCCAGTCTTCTGTaGTCCACTCTTCCACAGAAT +
Preference number: 5 (lower is better)
Translates to: TQQPTELGPHGRSEGRGVQSSLL*STLPQN
Trigger: ATTCTGTGGAAGAGTGGACAACAGAAGACTGGACTG...GACCCCTCTGCCTTCAGATCTTCCATGTGGCCCCAGCTCAGTGGGCTGCTGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp CAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGACAGGCTATGTTTGGGCTGTGGTaGGTGGGCAGATACAATATT +
Preference number: 5 (lower is better)
Translates to: QSRTRPKAEALLCADGQAMFGLW*VGRYNI
Trigger: AATATTGTATCTGCCCACCAACCACAGCCCAAACAT...AGCCTGTCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp AGTCCCCAGAGCAGGACCAGACCCAAAGCGGAAGCCCTGCTGTGCGCAGACGGAATGTTTGGGCTGTGGTaGGTGGGCAGATACAATATT +
Preference number: 5 (lower is better)
Translates to: SPQSRTRPKAEALLCADGMFGLW*VGRYNI
Trigger: AATATTGTATCTGCCCACCAACCACAGCCCAAACAT...TCCGTCTGCGCACAGCAGGGCTTCCGCTTTGGGTCTGGTCCTGCTCTGGGGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp GAGAAAACCCTGAAACAGCTGTCCACCTGGCTCAGGACAACTGGGATGGGGGAGGCATCTGCTCAGCTGTaGCCTGCACCACTTGTTTCT +
Preference number: 5 (lower is better)
Translates to: EKTLKQLSTWLRTTGMGEASAQL*PAPLVS
Trigger: AGAAACAAGTGGTGCAGGCAACAGCTGAGCAGATGC...CTCCCCCATCCCAGTTGTCCTGAGCCAGGTGGACAGCTGTTTCAGGGTTTTCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CCA 90 bp CCTGGTATGCACAGAACTCTGGTCGTAAGAGGAAGAAGTTGTTACTaGGCTAGTGGAGCTCAAGGCCGAGCTGGTCAGAGTGGAGGAGGT +
Preference number: 5 (lower is better)
Translates to: PGMHRTLVVRGRSCY*ASGAQGRAGQSGGG
Trigger: ACCTCCTCCACTCTGACCAGCTCGGCCTTGAGCTCCACTAGCCCAGTAACAACTTCTTCCTCTTACGACCAGAGTTCTGTGCATACCAGG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CCA 90 bp CAGTCGACTTGTTTGGTGCCTGAGATGATCCACCATAGCCACCCTTaGTGTAGTCTCCTGCTGCCGTCCCCTGGGTCAAATCGTCATAAC +
Preference number: 5 (lower is better)
Translates to: QSTCLVPEMIHHSHP*CSLLLPSPGSNRHN
Trigger: GTTATGACGATTTGACCCAGGGGACGGCAGCAGGAGACTACACCAAGGGTGGCTATGGTGGATCATCTCAGGCACCAAACAAGTCGACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp GAGAAAACCCTGAAACAGCTGTCCACCTGGCTCAGGACAACTGGGATGGGGGAGTTCCATAGTAATCCATaGGCAGCCGTGACTGCAGCA +
Preference number: 5 (lower is better)
Translates to: EKTLKQLSTWLRTTGMGEFHSNP*AAVTAA
Trigger: TGCTGCAGTCACGGCTGCCAATGGATTACTATGGAA...CTCCCCCATCCCAGTTGTCCTGAGCCAGGTGGACAGCTGTTTCAGGGTTTTCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS TCA 90 bp TGGGTGGGAGGAGCAGGCTTGTGGAGCAAGGCCACCAGATCAATGTaGCAAGGAAAGAAGTTGTTACCTTGGCCCAGGAAACTCAGTGGT +
Preference number: 5 (lower is better)
Translates to: WVGGAGLWSKATRSM*QGKKLLPWPRKLSG
Trigger: ACCACTGAGTTTCCTGGGCCAAGGTAACAACTTCTTTCCTTGTCACATTGATCTGGTGGCCTTGCTCCACAAGCCTGCTCCTCCCACCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135323.2
CDS-3UTR CAA 90 bp AGTGGGGCCTACTTGGCTATGGTAAGGGTGTCTGGACTGGGAGCACACACTTGTCCTGGCGGTTTCAACTaGTCCAAAATCTGGGAGTTG +
Preference number: 5 (lower is better)
Translates to: SGAYLAMVRVSGLGAHTCPGGFN*SKIWEL
Trigger: CAACTCCCAGATTTTGGACAAGTTGAAACCGCCAGG...ACAAGTGTGTGCTCCCAGTCCAGACACCCTTACCATAGCCAAGTAGGCCCCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp GAGAAAACCCTGAAACAGCTGTCCACCTGGCTCAGGACAACTGGGATGGGGGAGTGGATTCTCGGGGTTTaGCCAGAGAAGAAAAGGACT +
Preference number: 5 (lower is better)
Translates to: EKTLKQLSTWLRTTGMGEWILGV*PEKKRT
Trigger: AGTCCTTTTCTTCTCTGGCAAAACCCCGAGAATCCA...CTCCCCCATCCCAGTTGTCCTGAGCCAGGTGGACAGCTGTTTCAGGGTTTTCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp AGTGGGGCCTACTTGGCTATGGTAAGGGTGTCTGGACTGGGAGCACACACTTGTAACCAGTCGACTTGTTaGGTGCCTGAGATGATCCAC +
Preference number: 5 (lower is better)
Translates to: SGAYLAMVRVSGLGAHTCNQSTC*VPEMIH
Trigger: GTGGATCATCTCAGGCACCAAACAAGTCGACTGGTT...ACAAGTGTGTGCTCCCAGTCCAGACACCCTTACCATAGCCAAGTAGGCCCCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS TCA 90 bp AACTCAGAGAGCGATGGCTCTGATCCAAATTCCAGGGCCCCAAACTaGACATTCAGCCCTGTGACATCTGAAGACCCGGGCATTTCCACT +
Preference number: 5 (lower is better)
Translates to: NSESDGSDPNSRAPN*TFSPVTSEDPGIST
Trigger: AGTGGAAATGCCCGGGTCTTCAGATGTCACAGGGCTGAATGTTCAGTTTGGGGCCCTGGAATTTGGATCAGAGCCATCGCTCTCTGAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp AGTGGGGCCTACTTGGCTATGGTAAGGGTGTCTGGACTGGGAGCACACACTTGTTGGATTCTCGGGGTTTaGCCAGAGAAGAAAAGGACT +
Preference number: 5 (lower is better)
Translates to: SGAYLAMVRVSGLGAHTCWILGV*PEKKRT
Trigger: AGTCCTTTTCTTCTCTGGCAAAACCCCGAGAATCCA...ACAAGTGTGTGCTCCCAGTCCAGACACCCTTACCATAGCCAAGTAGGCCCCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp TACTTGGCTATGGTAAGGGTGTCTGGACTGGGAGCACACACTTGTGTGCTACCCAACCAGTCGACTTGTTaGGTGCCTGAGATGATCCAC +
Preference number: 5 (lower is better)
Translates to: YLAMVRVSGLGAHTCVLPNQSTC*VPEMIH
Trigger: GTGGATCATCTCAGGCACCAAACAAGTCGACTGGTT...GGGTAGCACACAAGTGTGTGCTCCCAGTCCAGACACCCTTACCATAGCCAAGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp ACAGGGAATGAGATAAGTCGTGATTCTTCATTGGTACTGACCTGGCCCCAAACCGGTGGGTTTGGAGGCTaGAGACTTGGGCTGAAGGGA +
Preference number: 5 (lower is better)
Translates to: TGNEISRDSSLVLTWPQTGGFGG*RLGLKG
Trigger: TCCCTTCAGCCCAAGTCTCAAGCCTCCAAACCCACC...GGTTTGGGGCCAGGTCAGTACCAATGAAGAATCACGACTTATCTCATTCCCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CCA 90 bp CTGGAGCTGAGTCGGGTGGGCTTGCAGAGCTTTGGTATGCAATCCTaGTATGCACAGAACTCTGGTCGTAAGAGGAAGAAGTTGTTACTG +
Preference number: 5 (lower is better)
Translates to: LELSRVGLQSFGMQS*YAQNSGRKRKKLLL
Trigger: CAGTAACAACTTCTTCCTCTTACGACCAGAGTTCTGTGCATACCAGGATTGCATACCAAAGCTCTGCAAGCCCACCCGACTCAGCTCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS TCA 90 bp AGTTTGCAGTCCCTGGTGCCATCTGATTGTTGTGCTGAGAATTTGTaGAGACAAGGGCTTGGCCAAAGCCCTGCTGCTGGGATGTTTCAA +
Preference number: 5 (lower is better)
Translates to: SLQSLVPSDCCAENL*RQGLGQSPAAGMFQ
Trigger: TTGAAACATCCCAGCAGCAGGGCTTTGGCCAAGCCCTTGTCTTCACAAATTCTCAGCACAACAATCAGATGGCACCAGGGACTGCAAACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000135323.2
CDS CCA 90 bp CATAAGAACTTTTACTTGGCGGTTCCTGAGACATACTGTGAGACTTaGCCAGCCCTTCCGGTCCCTCATCTGTACCATTCTGAGCAGCTT +
Preference number: 5 (lower is better)
Translates to: HKNFYLAVPETYCET*PALPVPHLYHSEQL
Trigger: AAGCTGCTCAGAATGGTACAGATGAGGGACCGGAAGGGCTGGCCAAGTCTCACAGTATGTCTCAGGAACCGCCAAGTAAAAGTTCTTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CCA 90 bp ATCCTGAGCCAAGGACGGATGACAAACTCTGAGGAGAATATGAGCTaGCAGAAGTGGAGTTTGCAGTCCCTGGTGCCATCTGATTGTTGT +
Preference number: 5 (lower is better)
Translates to: ILSQGRMTNSEENMS*QKWSLQSLVPSDCC
Trigger: ACAACAATCAGATGGCACCAGGGACTGCAAACTCCACTTCTGCCAGCTCATATTCTCCTCAGAGTTTGTCATCCGTCCTTGGCTCAGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000135323.2
CDS-3UTR CAA 90 bp ACAGGGAATGAGATAAGTCGTGATTCTTCATTGGTACTGACCTGGCCCCAAACCGCATCTGCTCAGCTGTaGCCTGCACCACTTGTTTCT +
Preference number: 5 (lower is better)
Translates to: TGNEISRDSSLVLTWPQTASAQL*PAPLVS
Trigger: AGAAACAAGTGGTGCAGGCAACAGCTGAGCAGATGC...GGTTTGGGGCCAGGTCAGTACCAATGAAGAATCACGACTTATCTCATTCCCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp GACAGGCTTCTGCTGGACAGGGGTTATTTCTTCTGTTTCCAGATTAAGATTTGTGTTGACTTCGGTGGCTaGGGTGGGAGGAGCAGGCTT +
Preference number: 5 (lower is better)
Translates to: DRLLLDRGYFFCFQIKICVDFGG*GGRSRL
Trigger: AAGCCTGCTCCTCCCACCCAAGCCACCGAAGTCAAC...ACAAATCTTAATCTGGAAACAGAAGAAATAACCCCTGTCCAGCAGAAGCCTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS TCA 90 bp CCAAACTGCCAACTTTGTCCCACAGCCATCTGTAGACATGGACTCTaGATAGTCTGCAGGATTGAATGTCCCCATGCTTTGAGCGGAGAA +
Preference number: 5 (lower is better)
Translates to: PNCQLCPTAICRHGL*IVCRIECPHALSGE
Trigger: TTCTCCGCTCAAAGCATGGGGACATTCAATCCTGCAGACTATTCAGAGTCCATGTCTACAGATGGCTGTGGGACAAAGTTGGCAGTTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000134782.2
CDS CCA 90 bp CACAGAATTCTTCCAGGCACCTTTAAGTCCATAAGAACTTTTACTTaGCGGTTCCTGAGACATACTGTGAGACTTGGCCAGCCCTTCCGG +
Preference number: 5 (lower is better)
Translates to: HRILPGTFKSIRTFT*RFLRHTVRLGQPFR
Trigger: CCGGAAGGGCTGGCCAAGTCTCACAGTATGTCTCAGGAACCGCCAAGTAAAAGTTCTTATGGACTTAAAGGTGCCTGGAAGAATTCTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CCA 90 bp CAAGGACGGATGACAAACTCTGAGGAGAATATGAGCTGGCAGAAGTaGAGTTTGCAGTCCCTGGTGCCATCTGATTGTTGTGCTGAGAAT +
Preference number: 5 (lower is better)
Translates to: QGRMTNSEENMSWQK*SLQSLVPSDCCAEN
Trigger: ATTCTCAGCACAACAATCAGATGGCACCAGGGACTGCAAACTCCACTTCTGCCAGCTCATATTCTCCTCAGAGTTTGTCATCCGTCCTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000135323.2
CDS-3UTR CAA 90 bp TTATTAGGTGGAGTTTGGGTGAGAGAAAACCCTGAAACAGCTGTCCACCTGGCTGATGTTTCAAAGGAGTaGACTTCGGTGGCTTGGGTG +
Preference number: 5 (lower is better)
Translates to: LLGGVWVRENPETAVHLADVSKE*TSVAWV
Trigger: CACCCAAGCCACCGAAGTCAACTCCTTTGAAACATC...AGCCAGGTGGACAGCTGTTTCAGGGTTTTCTCTCACCCAAACTCCACCTAATAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS-3UTR CAA 90 bp ACAGGGAATGAGATAAGTCGTGATTCTTCATTGGTACTGACCTGGCCCCAAACCCCTGGCGGTTTCAACTaGTCCAAAATCTGGGAGTTG +
Preference number: 5 (lower is better)
Translates to: TGNEISRDSSLVLTWPQTPGGFN*SKIWEL
Trigger: CAACTCCCAGATTTTGGACAAGTTGAAACCGCCAGG...GGTTTGGGGCCAGGTCAGTACCAATGAAGAATCACGACTTATCTCATTCCCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS TCA 90 bp ATCAATGCTGTGCCCAGGTGTGACATGGTTCTCTGCTGGAGCAGATaGAGCAGTGAATACCTTTGTTTCAGAGAGATCTTCAGTCCAGTC +
Preference number: 5 (lower is better)
Translates to: INAVPRCDMVLCWSR*SSEYLCFREIFSPV
Trigger: GACTGGACTGAAGATCTCTCTGAAACAAAGGTATTCACTGCTTCATCTGCTCCAGCAGAGAACCATGTCACACCTGGGCACAGCATTGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CCA 90 bp ATGGGCTCAAACCTGGCGGTTTCAACTTGTCCAAAATCTGGGAGTTaGAGATGTTCACCATGTTTGATTGAGGCAGCTCTCCAAATCCTG +
Preference number: 5 (lower is better)
Translates to: MGSNLAVSTCPKSGS*RCSPCLIEAALQIL
Trigger: CAGGATTTGGAGAGCTGCCTCAATCAAACATGGTGAACATCTCCAACTCCCAGATTTTGGACAAGTTGAAACCGCCAGGTTTGAGCCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000135323.2
CDS-3UTR CAA 90 bp GACAGGCTTCTGCTGGACAGGGGTTATTTCTTCTGTTTCCAGATTAAGATTTGTCGCAGGCTTGTCTCCTaGGCTGCAGTCAATCCCATT +
Preference number: 5 (lower is better)
Translates to: DRLLLDRGYFFCFQIKICRRLVS*AAVNPI
Trigger: AATGGGATTGACTGCAGCCAAGGAGACAAGCCTGCG...ACAAATCTTAATCTGGAAACAGAAGAAATAACCCCTGTCCAGCAGAAGCCTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS TCA 90 bp AACTTGTCCAAAATCTGGGAGTTGGAGATGTTCACCATGTTTGATTaGGGCAGCTCTCCAAATCCTGAGCCAAGGACGGATGACAAACTC +
Preference number: 5 (lower is better)
Translates to: NLSKIWELEMFTMFD*GSSPNPEPRTDDKL
Trigger: GAGTTTGTCATCCGTCCTTGGCTCAGGATTTGGAGAGCTGCCTCAATCAAACATGGTGAACATCTCCAACTCCCAGATTTTGGACAAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000135323.2
CDS CCA 90 bp GGAGGTACCCGGCGCTTAGGAAGTTTAATATGTTTGGGCTGTGGTTaGTGGGCAGATACAATATTTTCAACAGTCATGTTAGGAAGCTGC +
Preference number: 5 (lower is better)
Translates to: GGTRRLGSLICLGCG*WADTIFSTVMLGSC
Trigger: GCAGCTTCCTAACATGACTGTTGAAAATATTGTATCTGCCCACCAACCACAGCCCAAACATATTAAACTTCCTAAGCGCCGGGTACCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CCA 90 bp CGCTGGAGGTACCCGGCGCTTAGGAAGTTTAATATGTTTGGGCTGTaGTTGGTGGGCAGATACAATATTTTCAACAGTCATGTTAGGAAG +
Preference number: 5 (lower is better)
Translates to: RWRYPALRKFNMFGL*LVGRYNIFNSHVRK
Trigger: CTTCCTAACATGACTGTTGAAAATATTGTATCTGCCCACCAACCACAGCCCAAACATATTAAACTTCCTAAGCGCCGGGTACCTCCAGCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CCA 90 bp GGTACCCGGCGCTTAGGAAGTTTAATATGTTTGGGCTGTGGTTGGTaGGCAGATACAATATTTTCAACAGTCATGTTAGGAAGCTGCAAA +
Preference number: 5 (lower is better)
Translates to: GTRRLGSLICLGCGW*ADTIFSTVMLGSCK
Trigger: TTTGCAGCTTCCTAACATGACTGTTGAAAATATTGTATCTGCCCACCAACCACAGCCCAAACATATTAAACTTCCTAAGCGCCGGGTACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS TCA 90 bp TTCAAGGGCTCACTTAAAGACTTCGGGTACAAGCTGATAGGAATCTaGTTACTATTTTCACTGGCTGAAGCTGCTGATCCAAACTCAGAG +
Preference number: 5 (lower is better)
Translates to: FKGSLKDFGYKLIGI*LLFSLAEAADPNSE
Trigger: CTCTGAGTTTGGATCAGCAGCTTCAGCCAGTGAAAATAGTAATCAGATTCCTATCAGCTTGTACCCGAAGTCTTTAAGTGAGCCCTTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS TCA 90 bp TTAACTTTAGCTTCAAAATCTGAATCATTCTTATCAAAGATCACTTaGGCAAGCCGCATCTGCTCAGCTGTTGCCAGGCTGAGCTCAAGA +
Preference number: 5 (lower is better)
Translates to: LTLASKSESFLSKIT*ASRICSAVARLSSR
Trigger: TCTTGAGCTCAGCCTGGCAACAGCTGAGCAGATGCGGCTTGCTCAAGTGATCTTTGATAAGAATGATTCAGATTTTGAAGCTAAAGTTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134782.2
CDS TCA 90 bp TTAACTTTAGCTTCAAAATCTGAATCATTCTTATCAAAGATCACTTaGGCAAGCCGCATCTGCTCAGCTGTTGCCTGCACCACTTGTTTC +
Preference number: 5 (lower is better)
Translates to: LTLASKSESFLSKIT*ASRICSAVACTTCF
Trigger: GAAACAAGTGGTGCAGGCAACAGCTGAGCAGATGCGGCTTGCTCAAGTGATCTTTGATAAGAATGATTCAGATTTTGAAGCTAAAGTTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS TCA 90 bp TTTTCCCGTCACTTCCATAAGCTGCTTAACTTTAGCTTCAAAATCTaGATCATTCTTATCAAAGATCACTTGAGCAAGCCGCATCTGCTC +
Preference number: 5 (lower is better)
Translates to: FSRHFHKLLNFSFKI*IILIKDHLSKPHLL
Trigger: GAGCAGATGCGGCTTGCTCAAGTGATCTTTGATAAGAATGATTCAGATTTTGAAGCTAAAGTTAAGCAGCTTATGGAAGTGACGGGAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000134782.2
CDS CAA 72 bp TGCTCCCAGGCAGGACAACCCCTGAGGACGGGGCACTaGGAGCAGAGGTCGCCGCTGCTGAGAAGGCGGCGG +
Preference number: 6 (lower is better)
Translates to: CSQAGQPLRTGH*EQRSPLLRRRR
Trigger: CCGCCGCCTTCTCAGCAGCGGCGACCTCTGCTCCAAGTGCCCCGTCCTCAGGGGTTGTCCTGCCTGGGAGCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CAA 90 bp GTCCCTCTGCCCCTGCCACGTCCAAATCCTCTGCCTCGGGCCCGCTaGCCCCGCTCCGCAGGCTTGTCTCCTTGGCTGCAGTCAATCCCA +
Preference number: 6 (lower is better)
Translates to: VPLPLPRPNPLPRAR*PRSAGLSPWLQSIP
Trigger: TGGGATTGACTGCAGCCAAGGAGACAAGCCTGCGGAGCGGGGCAAGCGGGCCCGAGGCAGAGGATTTGGACGTGGCAGGGGCAGAGGGAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000134782.2
CDS GCA 72 bp GGAGGCGGGGCCGGGCAGGGTGCTCACAGATGGGAGTaGGGAAGGGTCTGTCTTCTTTGGAGCTGGAACGGA +
Preference number: 6 (lower is better)
Translates to: GGGAGQGAHRWE*GRVCLLWSWNG
Trigger: TCCGTTCCAGCTCCAAAGAAGACAGACCCTTCCGCACTCCCATCTGTGAGCACCCTGCCCGGCCCCGCCTCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CCA 72 bp CTCGGACTCGGTTGCCGCCTCTTCCCTTGCGGTTGTTaGTTCCCCGTCCACGACTCGCTTCTCTCTCCGTCC +
Preference number: 6 (lower is better)
Translates to: LGLGCRLFPCGC*FPVHDSLLSPS
Trigger: GGACGGAGAGAGAAGCGAGTCGTGGACGGGGAACCAACAACCGCAAGGGAAGAGGCGGCAACCGAGTCCGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000134782.2
CDS CCA 72 bp CTGAGAAGGCGGCGGAGGATGCGGTGCTCTCCACGCTaGCATGAGTGTGTGGCGTGCTTGTGGAACGTGTCG +
Preference number: 6 (lower is better)
Translates to: LRRRRRMRCSPR*HECVACLWNVS
Trigger: CGACACGTTCCACAAGCACGCCACACACTCATGCCAGCGTGGAGAGCACCGCATCCTCCGCCGCCTTCTCAG
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CCA 72 bp CTGAGACTGGCTCTGCTGGGCCTGAGCTGGGGTCGTTaGAGGTGCAGGGGATGCAGAGTCTCCTCGGCCAAA +
Preference number: 6 (lower is better)
Translates to: LRLALLGLSWGR*RCRGCRVSSAK
Trigger: TTTGGCCGAGGAGACTCTGCATCCCCTGCACCTCCAACGACCCCAGCTCAGGCCCAGCAGAGCCAGTCTCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CAA 72 bp CCAGTATGGAGCGCTGCCGTAGGTGGGTTTGGAGGCTaGAGACTTGGGCTGAAGGGAGCTGGGCTGGCTGCG +
Preference number: 6 (lower is better)
Translates to: PVWSAAVGGFGG*RLGLKGAGLAA
Trigger: CGCAGCCAGCCCAGCTCCCTTCAGCCCAAGTCTCAAGCCTCCAAACCCACCTACGGCAGCGCTCCATACTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS TCA 72 bp AAGGCGGCGGAGGATGCGGTGCTCTCCACGCTGGCATaGGTGTGTGGCGTGCTTGTGGAACGTGTCGCATGT +
Preference number: 6 (lower is better)
Translates to: KAAEDAVLSTLA*VCGVLVERVAC
Trigger: ACATGCGACACGTTCCACAAGCACGCCACACACTCATGCCAGCGTGGAGAGCACCGCATCCTCCGCCGCCTT
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS GCA 72 bp CTGGGCCTGAGCTGGGGTCGTTGGAGGTGCAGGGGATaGAGAGTCTCCTCGGCCAAACTTTGTGACGTCACC +
Preference number: 6 (lower is better)
Translates to: LGLSWGRWRCRG*RVSSAKLCDVT
Trigger: GGTGACGTCACAAAGTTTGGCCGAGGAGACTCTGCATCCCCTGCACCTCCAACGACCCCAGCTCAGGCCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CAA 72 bp TCTCGGACTCGGTTGCCGCCTCTTCCCTTGCGGTTGTaGGTTCCCCGTCCACGACTCGCTTCTCTCTCCGTC +
Preference number: 6 (lower is better)
Translates to: SRTRLPPLPLRL*VPRPRLASLSV
Trigger: GACGGAGAGAGAAGCGAGTCGTGGACGGGGAACCAACAACCGCAAGGGAAGAGGCGGCAACCGAGTCCGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000134782.2
CDS CAA 90 bp CGGAGGATGCGGTGCTCTCCACGCTGGCATGAGTGTGTGGCGTGCTaGTGGAACGTGTCGCATGTGCAGAGGTCATGCTGTTCTGGTGGC +
Preference number: 6 (lower is better)
Translates to: RRMRCSPRWHECVAC*WNVSHVQRSCCSGG
Trigger: GCCACCAGAACAGCATGACCTCTGCACATGCGACACGTTCCACAAGCACGCCACACACTCATGCCAGCGTGGAGAGCACCGCATCCTCCG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS TCA 72 bp CGGGGGAGTGCTGAGGGCCACACCGTGCTGCTTCGCTaGGGTTGGAGGGACAAACATAGTAGGCCCATACTG +
Preference number: 6 (lower is better)
Translates to: RGSAEGHTVLLR*GWRDKHSRPIL
Trigger: CAGTATGGGCCTACTATGTTTGTCCCTCCAACCTCAGCGAAGCAGCACGGTGTGGCCCTCAGCACTCCCCCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS GCA 72 bp AAAGGGGTCGGGGGAGTGCTGAGGGCCACACCGTGCTaGTTCGCTGAGGTTGGAGGGACAAACATAGTAGGC +
Preference number: 6 (lower is better)
Translates to: KGVGGVLRATPC*FAEVGGTNIVG
Trigger: GCCTACTATGTTTGTCCCTCCAACCTCAGCGAAGCAGCACGGTGTGGCCCTCAGCACTCCCCCGACCCCTTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CAA 72 bp AACTCTCGGACTCGGTTGCCGCCTCTTCCCTTGCGGTaGTTGGTTCCCCGTCCACGACTCGCTTCTCTCTCC +
Preference number: 6 (lower is better)
Translates to: NSRTRLPPLPLR*LVPRPRLASLS
Trigger: GGAGAGAGAAGCGAGTCGTGGACGGGGAACCAACAACCGCAAGGGAAGAGGCGGCAACCGAGTCCGAGAGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000134782.2
CDS CAA 90 bp CGTCCAAATCCTCTGCCTCGGGCCCGCTTGCCCCGCTCCGCAGGCTaGTCTCCTTGGCTGCAGTCAATCCCATTCTCTTCACCTTTGAAC +
Preference number: 6 (lower is better)
Translates to: RPNPLPRARLPRSAG*SPWLQSIPFSSPLN
Trigger: GTTCAAAGGTGAAGAGAATGGGATTGACTGCAGCCAAGGAGACAAGCCTGCGGAGCGGGGCAAGCGGGCCCGAGGCAGAGGATTTGGACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000134782.2
CDS CAA 90 bp GGACTCCAAACCAGGAGGAGGGACACTGACGGCCTGGGTCTGGTGTaGCTGTCGCTGGCTCAACTGGCTGAGAACTGGAGATGGTTCAGG +
Preference number: 6 (lower is better)
Translates to: GLQTRRRDTDGLGLV*LSLAQLAENWRWFR
Trigger: CCTGAACCATCTCCAGTTCTCAGCCAGTTGAGCCAGCGACAGCAACACCAGACCCAGGCCGTCAGTGTCCCTCCTCCTGGTTTGGAGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000135323.2
CDS GCA 72 bp ATGCGGTGCTCTCCACGCTGGCATGAGTGTGTGGCGTaGTTGTGGAACGTGTCGCATGTGCAGAGGTCATGC +
Preference number: 6 (lower is better)
Translates to: MRCSPRWHECVA*LWNVSHVQRSC
Trigger: GCATGACCTCTGCACATGCGACACGTTCCACAAGCACGCCACACACTCATGCCAGCGTGGAGAGCACCGCAT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CCA 72 bp TCCAAACCAGGAGGAGGGACACTGACGGCCTGGGTCTaGTGTTGCTGTCGCTGGCTCAACTGGCTGAGAACT +
Preference number: 6 (lower is better)
Translates to: SKPGGGTLTAWV*CCCRWLNWLRT
Trigger: AGTTCTCAGCCAGTTGAGCCAGCGACAGCAACACCAGACCCAGGCCGTCAGTGTCCCTCCTCCTGGTTTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000135323.2
CDS CAA 72 bp CCTTTGAACTCTCGGACTCGGTTGCCGCCTCTTCCCTaGCGGTTGTTGGTTCCCCGTCCACGACTCGCTTCT +
Preference number: 6 (lower is better)
Translates to: PLNSRTRLPPLP*RLLVPRPRLAS
Trigger: AGAAGCGAGTCGTGGACGGGGAACCAACAACCGCAAGGGAAGAGGCGGCAACCGAGTCCGAGAGTTCAAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000134782.2
CDS CAA 72 bp GAGTTGACTTCGGTGGCTTGGGTGGGAGGAGCAGGCTaGTGGAGCAAGGCCACCAGATCAATGCTGTGCCCA +
Preference number: 6 (lower is better)
Translates to: ELTSVAWVGGAG*WSKATRSMLCP
Trigger: TGGGCACAGCATTGATCTGGTGGCCTTGCTCCACAAGCCTGCTCCTCCCACCCAAGCCACCGAAGTCAACTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CAA 72 bp CGGTGCTCTCCACGCTGGCATGAGTGTGTGGCGTGCTaGTGGAACGTGTCGCATGTGCAGAGGTCATGCTGT +
Preference number: 6 (lower is better)
Translates to: RCSPRWHECVAC*WNVSHVQRSCC
Trigger: ACAGCATGACCTCTGCACATGCGACACGTTCCACAAGCACGCCACACACTCATGCCAGCGTGGAGAGCACCG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CAA 90 bp CCTTTGAACTCTCGGACTCGGTTGCCGCCTCTTCCCTTGCGGTTGTaGGTTCCCCGTCCACGACTCGCTTCTCTCTCCGTCCTCTTCTCT +
Preference number: 6 (lower is better)
Translates to: PLNSRTRLPPLPLRL*VPRPRLASLSVLFS
Trigger: AGAGAAGAGGACGGAGAGAGAAGCGAGTCGTGGACGGGGAACCAACAACCGCAAGGGAAGAGGCGGCAACCGAGTCCGAGAGTTCAAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000134782.2
CDS CAA 90 bp TCACCTTTGAACTCTCGGACTCGGTTGCCGCCTCTTCCCTTGCGGTaGTTGGTTCCCCGTCCACGACTCGCTTCTCTCTCCGTCCTCTTC +
Preference number: 6 (lower is better)
Translates to: SPLNSRTRLPPLPLR*LVPRPRLASLSVLF
Trigger: GAAGAGGACGGAGAGAGAAGCGAGTCGTGGACGGGGAACCAACAACCGCAAGGGAAGAGGCGGCAACCGAGTCCGAGAGTTCAAAGGTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000134782.2
CDS CAA 90 bp TTCTCTTCACCTTTGAACTCTCGGACTCGGTTGCCGCCTCTTCCCTaGCGGTTGTTGGTTCCCCGTCCACGACTCGCTTCTCTCTCCGTC +
Preference number: 6 (lower is better)
Translates to: FSSPLNSRTRLPPLP*RLLVPRPRLASLSV
Trigger: GACGGAGAGAGAAGCGAGTCGTGGACGGGGAACCAACAACCGCAAGGGAAGAGGCGGCAACCGAGTCCGAGAGTTCAAAGGTGAAGAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000134782.2
CDS CAA 90 bp ACAAGGGCTTGGCCAAAGCCCTGCTGCTGGGATGTTTCAAAGGAGTaGACTTCGGTGGCTTGGGTGGGAGGAGCAGGCTTGTGGAGCAAG +
Preference number: 6 (lower is better)
Translates to: TRAWPKPCCWDVSKE*TSVAWVGGAGLWSK
Trigger: CTTGCTCCACAAGCCTGCTCCTCCCACCCAAGCCACCGAAGTCAACTCCTTTGAAACATCCCAGCAGCAGGGCTTTGGCCAAGCCCTTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000135323.2
CDS TCA 72 bp TTCAGGCTGAGATTTGAAGTCCAAACGACTGAGGACTaGGGGTTGGGGCGCCGAGGGCTTGAGGTCCCAAGC +
Preference number: 6 (lower is better)
Translates to: FRLRFEVQTTED*GLGRRGLEVPS
Trigger: GCTTGGGACCTCAAGCCCTCGGCGCCCCAACCCTCAGTCCTCAGTCGTTTGGACTTCAAATCTCAGCCTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000135323.2
CDS CCA 72 bp TGCTGGGATGTTTCAAAGGAGTTGACTTCGGTGGCTTaGGTGGGAGGAGCAGGCTTGTGGAGCAAGGCCACC +
Preference number: 6 (lower is better)
Translates to: CWDVSKELTSVA*VGGAGLWSKAT
Trigger: GGTGGCCTTGCTCCACAAGCCTGCTCCTCCCACCCAAGCCACCGAAGTCAACTCCTTTGAAACATCCCAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000135323.2
CDS CAA 72 bp CTGCTGGGATGTTTCAAAGGAGTTGACTTCGGTGGCTaGGGTGGGAGGAGCAGGCTTGTGGAGCAAGGCCAC +
Preference number: 6 (lower is better)
Translates to: LLGCFKGVDFGG*GGRSRLVEQGH
Trigger: GTGGCCTTGCTCCACAAGCCTGCTCCTCCCACCCAAGCCACCGAAGTCAACTCCTTTGAAACATCCCAGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000135323.2
CDS CAA 72 bp TGGCCAAAGCCCTGCTGCTGGGATGTTTCAAAGGAGTaGACTTCGGTGGCTTGGGTGGGAGGAGCAGGCTTG +
Preference number: 6 (lower is better)
Translates to: WPKPCCWDVSKE*TSVAWVGGAGL
Trigger: CAAGCCTGCTCCTCCCACCCAAGCCACCGAAGTCAACTCCTTTGAAACATCCCAGCAGCAGGGCTTTGGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000135323.2
CDS CAA 90 bp CTGCAGTCAATCCCATTCTCTTCACCTTTGAACTCTCGGACTCGGTaGCCGCCTCTTCCCTTGCGGTTGTTGGTTCCCCGTCCACGACTC +
Preference number: 6 (lower is better)
Translates to: LQSIPFSSPLNSRTR*PPLPLRLLVPRPRL
Trigger: GAGTCGTGGACGGGGAACCAACAACCGCAAGGGAAGAGGCGGCAACCGAGTCCGAGAGTTCAAAGGTGAAGAGAATGGGATTGACTGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000134782.2
CDS CAA 90 bp GTTTCAAAGGAGTTGACTTCGGTGGCTTGGGTGGGAGGAGCAGGCTaGTGGAGCAAGGCCACCAGATCAATGCTGTGCCCAGGTGTGACA +
Preference number: 6 (lower is better)
Translates to: VSKELTSVAWVGGAG*WSKATRSMLCPGVT
Trigger: TGTCACACCTGGGCACAGCATTGATCTGGTGGCCTTGCTCCACAAGCCTGCTCCTCCCACCCAAGCCACCGAAGTCAACTCCTTTGAAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CCA 72 bp TGCTCTCCACGCTGGCATGAGTGTGTGGCGTGCTTGTaGAACGTGTCGCATGTGCAGAGGTCATGCTGTTCT +
Preference number: 6 (lower is better)
Translates to: CSPRWHECVACL*NVSHVQRSCCS
Trigger: AGAACAGCATGACCTCTGCACATGCGACACGTTCCACAAGCACGCCACACACTCATGCCAGCGTGGAGAGCA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CAA 90 bp CTGTTGCCTGCACCACTTGTTTCTGTGACTGGGCTGCGTGTGCTGTaGGCATCTGTGGTTTTTCCCGAGCACCTCGGCAACGATCATTGC +
Preference number: 6 (lower is better)
Translates to: LLPAPLVSVTGLRVL*ASVVFPEHLGNDHC
Trigger: GCAATGATCGTTGCCGAGGTGCTCGGGAAAAACCACAGATGCCAACAGCACACGCAGCCCAGTCACAGAAACAAGTGGTGCAGGCAACAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CAA 90 bp AAAGCCCTGCTGCTGGGATGTTTCAAAGGAGTTGACTTCGGTGGCTaGGGTGGGAGGAGCAGGCTTGTGGAGCAAGGCCACCAGATCAAT +
Preference number: 6 (lower is better)
Translates to: KALLLGCFKGVDFGG*GGRSRLVEQGHQIN
Trigger: ATTGATCTGGTGGCCTTGCTCCACAAGCCTGCTCCTCCCACCCAAGCCACCGAAGTCAACTCCTTTGAAACATCCCAGCAGCAGGGCTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000135323.2
CDS TCA 72 bp CTCCTTGGCTGCAGTCAATCCCATTCTCTTCACCTTTaGACTCTCGGACTCGGTTGCCGCCTCTTCCCTTGC +
Preference number: 6 (lower is better)
Translates to: LLGCSQSHSLHL*TLGLGCRLFPC
Trigger: GCAAGGGAAGAGGCGGCAACCGAGTCCGAGAGTTCAAAGGTGAAGAGAATGGGATTGACTGCAGCCAAGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000134782.2
CDS TCA 72 bp CAAGGCCGAGCTGGTCAGAGTGGAGGAGGTAACGACTaGGGTTGTGTAGGTAGAGCTCTGTACAGCACTGGT +
Preference number: 6 (lower is better)
Translates to: QGRAGQSGGGND*GCVGRALYSTG
Trigger: ACCAGTGCTGTACAGAGCTCTACCTACACAACCTCAGTCGTTACCTCCTCCACTCTGACCAGCTCGGCCTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CCA 72 bp TGTTTGGTGCCTGAGATGATCCACCATAGCCACCCTTaGTGTAGTCTCCTGCTGCCGTCCCCTGGGTCAAAT +
Preference number: 6 (lower is better)
Translates to: CLVPEMIHHSHP*CSLLLPSPGSN
Trigger: ATTTGACCCAGGGGACGGCAGCAGGAGACTACACCAAGGGTGGCTATGGTGGATCATCTCAGGCACCAAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CAA 72 bp ATCCCATTCTCTTCACCTTTGAACTCTCGGACTCGGTaGCCGCCTCTTCCCTTGCGGTTGTTGGTTCCCCGT +
Preference number: 6 (lower is better)
Translates to: IPFSSPLNSRTR*PPLPLRLLVPR
Trigger: ACGGGGAACCAACAACCGCAAGGGAAGAGGCGGCAACCGAGTCCGAGAGTTCAAAGGTGAAGAGAATGGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000134782.2
CDS CAA 72 bp ACACTCCTTTGCCAGGCCCAGAACCAGTCGACTTGTTaGGTGCCTGAGATGATCCACCATAGCCACCCTTGG +
Preference number: 6 (lower is better)
Translates to: TLLCQAQNQSTC*VPEMIHHSHPW
Trigger: CCAAGGGTGGCTATGGTGGATCATCTCAGGCACCAAACAAGTCGACTGGTTCTGGGCCTGGCAAAGGAGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CAA 90 bp TGTACAGCTGCACCACTTGTTTCTGTGACTGGGCTGCGTGTGCTGTaGGCATCTGTGGTTTTTCCCGAGCACCTCGGCAACGATCATTGC +
Preference number: 6 (lower is better)
Translates to: CTAAPLVSVTGLRVL*ASVVFPEHLGNDHC
Trigger: GCAATGATCGTTGCCGAGGTGCTCGGGAAAAACCACAGATGCCAACAGCACACGCAGCCCAGTCACAGAAACAAGTGGTGCAGCTGTACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000134782.2
CDS TCA 72 bp CATCTGCTCAGCTGTTGCCTGCACCACTTGTTTCTGTaGCTGGGCTGCGTGTGCTGTTGGCATCTGTGGTTT +
Preference number: 6 (lower is better)
Translates to: HLLSCCLHHLFL*LGCVCCWHLWF
Trigger: AAACCACAGATGCCAACAGCACACGCAGCCCAGTCACAGAAACAAGTGGTGCAGGCAACAGCTGAGCAGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS TCA 72 bp TCCCTGGTGCCATCTGATTGTTGTGCTGAGAATTTGTaGAGACAAGGGCTTGGCCAAAGCCCTGCTGCTGGG +
Preference number: 6 (lower is better)
Translates to: SLVPSDCCAENL*RQGLGQSPAAG
Trigger: CCCAGCAGCAGGGCTTTGGCCAAGCCCTTGTCTTCACAAATTCTCAGCACAACAATCAGATGGCACCAGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000135323.2
CDS TCA 72 bp GGAGCTGGAACGGATGAAGTAGTGTCTACTGTGTGCTaGCTTCGACCACCGCCATGTCCGTTAGCAACAGAG +
Preference number: 6 (lower is better)
Translates to: GAGTDEVVSTVC*LRPPPCPLATE
Trigger: CTCTGTTGCTAACGGACATGGCGGTGGTCGAAGTCAGCACACAGTAGACACTACTTCATCCGTTCCAGCTCC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS TCA 72 bp GCAGACGGCAGGCTGAATGGTGGAGGAGTCCCGGCATaGAATCCCTGCTTGTCAAAAGTCTGTGTCTTGTTG +
Preference number: 6 (lower is better)
Translates to: ADGRLNGGGVPA*NPCLSKVCVLL
Trigger: CAACAAGACACAGACTTTTGACAAGCAGGGATTTCATGCCGGGACTCCTCCACCATTCAGCCTGCCGTCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000136057.2
CDS GCA 72 bp CAGGTAAGCCAGTGCCTGAAGATACTGACACTCCTTTaGCAGGCCCAGAACCAGTCGACTTGTTTGGTGCCT +
Preference number: 6 (lower is better)
Translates to: QVSQCLKILTLL*QAQNQSTCLVP
Trigger: AGGCACCAAACAAGTCGACTGGTTCTGGGCCTGGCAAAGGAGTGTCAGTATCTTCAGGCACTGGCTTACCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CAA 72 bp CAAAGATCACTTGAGCAAGCCGCATCTGCTCAGCTGTaGCCTGCACCACTTGTTTCTGTGACTGGGCTGCGT +
Preference number: 6 (lower is better)
Translates to: QRSLEQAASAQL*PAPLVSVTGLR
Trigger: ACGCAGCCCAGTCACAGAAACAAGTGGTGCAGGCAACAGCTGAGCAGATGCGGCTTGCTCAAGTGATCTTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CAA 72 bp TCAGGTAAGCCAGTGCCTGAAGATACTGACACTCCTTaGCCAGGCCCAGAACCAGTCGACTTGTTTGGTGCC +
Preference number: 6 (lower is better)
Translates to: SGKPVPEDTDTP*PGPEPVDLFGA
Trigger: GGCACCAAACAAGTCGACTGGTTCTGGGCCTGGCAAAGGAGTGTCAGTATCTTCAGGCACTGGCTTACCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS TCA 72 bp GTCAAGAGGTCTGTACAGCTGCACCACTTGTTTCTGTaGCTGGGCTGCGTGTGCTGTTGGCATCTGTGGTTT +
Preference number: 6 (lower is better)
Translates to: VKRSVQLHHLFL*LGCVCCWHLWF
Trigger: AAACCACAGATGCCAACAGCACACGCAGCCCAGTCACAGAAACAAGTGGTGCAGCTGTACAGACCTCTTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134782.2
CDS CCA 72 bp CACAGAACTCTGGTCGTAAGAGGAAGAAGTTGTTACTaGGCTAGTGGAGCTCAAGGCCGAGCTGGTCAGAGT +
Preference number: 6 (lower is better)
Translates to: HRTLVVRGRSCY*ASGAQGRAGQS
Trigger: ACTCTGACCAGCTCGGCCTTGAGCTCCACTAGCCCAGTAACAACTTCTTCCTCTTACGACCAGAGTTCTGTG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CAA 90 bp AAGATACTGACACTCCTTTGCCAGGCCCAGAACCAGTCGACTTGTTaGGTGCCTGAGATGATCCACCATAGCCACCCTTGGTGTAGTCTC +
Preference number: 6 (lower is better)
Translates to: KILTLLCQAQNQSTC*VPEMIHHSHPWCSL
Trigger: GAGACTACACCAAGGGTGGCTATGGTGGATCATCTCAGGCACCAAACAAGTCGACTGGTTCTGGGCCTGGCAAAGGAGTGTCAGTATCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS GCA 72 bp TGTTGTAGACGGAACCAGTCATATCAGGTAAGCCAGTaGCTGAAGATACTGACACTCCTTTGCCAGGCCCAG +
Preference number: 6 (lower is better)
Translates to: CCRRNQSYQVSQ*LKILTLLCQAQ
Trigger: CTGGGCCTGGCAAAGGAGTGTCAGTATCTTCAGGCACTGGCTTACCTGATATGACTGGTTCCGTCTACAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000136057.2
CDS CCA 72 bp TTTTACTTGGCGGTTCCTGAGACATACTGTGAGACTTaGCCAGCCCTTCCGGTCCCTCATCTGTACCATTCT +
Preference number: 6 (lower is better)
Translates to: FYLAVPETYCET*PALPVPHLYHS
Trigger: AGAATGGTACAGATGAGGGACCGGAAGGGCTGGCCAAGTCTCACAGTATGTCTCAGGAACCGCCAAGTAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CCA 72 bp CAAGGACGGATGACAAACTCTGAGGAGAATATGAGCTaGCAGAAGTGGAGTTTGCAGTCCCTGGTGCCATCT +
Preference number: 6 (lower is better)
Translates to: QGRMTNSEENMS*QKWSLQSLVPS
Trigger: AGATGGCACCAGGGACTGCAAACTCCACTTCTGCCAGCTCATATTCTCCTCAGAGTTTGTCATCCGTCCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000135323.2
CDS CCA 72 bp GGGCATTTCCACTGCGGACACAGGAACCTTAGACGCTaGAGGTACCCGGCGCTTAGGAAGTTTAATATGTTT +
Preference number: 6 (lower is better)
Translates to: GHFHCGHRNLRR*RYPALRKFNMF
Trigger: AAACATATTAAACTTCCTAAGCGCCGGGTACCTCCAGCGTCTAAGGTTCCTGTGTCCGCAGTGGAAATGCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CCA 72 bp AGTCGGGTGGGCTTGCAGAGCTTTGGTATGCAATCCTaGTATGCACAGAACTCTGGTCGTAAGAGGAAGAAG +
Preference number: 6 (lower is better)
Translates to: SRVGLQSFGMQS*YAQNSGRKRKK
Trigger: CTTCTTCCTCTTACGACCAGAGTTCTGTGCATACCAGGATTGCATACCAAAGCTCTGCAAGCCCACCCGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS GCA 72 bp TCCCTCATCTGTACCATTCTGAGCAGCTTCCCAAACTaGCAACTTTGTCCCACAGCCATCTGTAGACATGGA +
Preference number: 6 (lower is better)
Translates to: SLICTILSSFPN*QLCPTAICRHG
Trigger: TCCATGTCTACAGATGGCTGTGGGACAAAGTTGGCAGTTTGGGAAGCTGCTCAGAATGGTACAGATGAGGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000134782.2
CDS CAA 90 bp TGGTGCCATCTGATTGTTGTGCTGAGAATTTGTGAAGACAAGGGCTaGGCCAAAGCCCTGCTGCTGGGATGTTTCAAAGGAGTTGACTTC +
Preference number: 6 (lower is better)
Translates to: WCHLIVVLRICEDKG*AKALLLGCFKGVDF
Trigger: GAAGTCAACTCCTTTGAAACATCCCAGCAGCAGGGCTTTGGCCAAGCCCTTGTCTTCACAAATTCTCAGCACAACAATCAGATGGCACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000135323.2
CDS TCA 72 bp GTGCCCAGGTGTGACATGGTTCTCTGCTGGAGCAGATaGAGCAGTGAATACCTTTGTTTCAGAGAGATCTTC +
Preference number: 6 (lower is better)
Translates to: VPRCDMVLCWSR*SSEYLCFREIF
Trigger: GAAGATCTCTCTGAAACAAAGGTATTCACTGCTTCATCTGCTCCAGCAGAGAACCATGTCACACCTGGGCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CAA 72 bp CTGATTGTTGTGCTGAGAATTTGTGAAGACAAGGGCTaGGCCAAAGCCCTGCTGCTGGGATGTTTCAAAGGA +
Preference number: 6 (lower is better)
Translates to: LIVVLRICEDKG*AKALLLGCFKG
Trigger: TCCTTTGAAACATCCCAGCAGCAGGGCTTTGGCCAAGCCCTTGTCTTCACAAATTCTCAGCACAACAATCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000135323.2
CDS CAA 90 bp GTTTCAACTTGTCCAAAATCTGGGAGTTGGAGATGTTCACCATGTTaGATTGAGGCAGCTCTCCAAATCCTGAGCCAAGGACGGATGACA +
Preference number: 6 (lower is better)
Translates to: VSTCPKSGSWRCSPC*IEAALQILSQGRMT
Trigger: TGTCATCCGTCCTTGGCTCAGGATTTGGAGAGCTGCCTCAATCAAACATGGTGAACATCTCCAACTCCCAGATTTTGGACAAGTTGAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000135323.2
CDS TCA 72 bp CAACTTTGTCCCACAGCCATCTGTAGACATGGACTCTaGATAGTCTGCAGGATTGAATGTCCCCATGCTTTG +
Preference number: 6 (lower is better)
Translates to: QLCPTAICRHGL*IVCRIECPHAL
Trigger: CAAAGCATGGGGACATTCAATCCTGCAGACTATTCAGAGTCCATGTCTACAGATGGCTGTGGGACAAAGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000134782.2
CDS CCA 72 bp CTTCCAGGCACCTTTAAGTCCATAAGAACTTTTACTTaGCGGTTCCTGAGACATACTGTGAGACTTGGCCAG +
Preference number: 6 (lower is better)
Translates to: LPGTFKSIRTFT*RFLRHTVRLGQ
Trigger: CTGGCCAAGTCTCACAGTATGTCTCAGGAACCGCCAAGTAAAAGTTCTTATGGACTTAAAGGTGCCTGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CCA 72 bp AACCTGGCGGTTTCAACTTGTCCAAAATCTGGGAGTTaGAGATGTTCACCATGTTTGATTGAGGCAGCTCTC +
Preference number: 6 (lower is better)
Translates to: NLAVSTCPKSGS*RCSPCLIEAAL
Trigger: GAGAGCTGCCTCAATCAAACATGGTGAACATCTCCAACTCCCAGATTTTGGACAAGTTGAAACCGCCAGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000135323.2
CDS CAA 72 bp GCTGGAGGTACCCGGCGCTTAGGAAGTTTAATATGTTaGGGCTGTGGTTGGTGGGCAGATACAATATTTTCA +
Preference number: 6 (lower is better)
Translates to: AGGTRRLGSLIC*GCGWWADTIFS
Trigger: TGAAAATATTGTATCTGCCCACCAACCACAGCCCAAACATATTAAACTTCCTAAGCGCCGGGTACCTCCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CAA 90 bp TGGAGGTACCCGGCGCTTAGGAAGTTTAATATGTTTGGGCTGTGGTaGGTGGGCAGATACAATATTTTCAACAGTCATGTTAGGAAGCTG +
Preference number: 6 (lower is better)
Translates to: WRYPALRKFNMFGLW*VGRYNIFNSHVRKL
Trigger: CAGCTTCCTAACATGACTGTTGAAAATATTGTATCTGCCCACCAACCACAGCCCAAACATATTAAACTTCCTAAGCGCCGGGTACCTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS TCA 72 bp TGCAAAGGGAATTCCATAGTAATCCATTGGCAGCCGTaGCTGCAGCATCTGGAGCTCATCATAACCGTAAAT +
Preference number: 6 (lower is better)
Translates to: CKGNSIVIHWQP*LQHLELIITVN
Trigger: ATTTACGGTTATGATGAGCTCCAGATGCTGCAGTCACGGCTGCCAATGGATTACTATGGAATTCCCTTTGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CAA 90 bp ACAGTCTCCCATGAAGTGGTGTCAGAATTCCCTTCCAACAGTATATaGATAGCTTTGTTCACATCACCATTACAGTCATGTAGGGCCACG +
Preference number: 6 (lower is better)
Translates to: TVSHEVVSEFPSNSI*IALFTSPLQSCRAT
Trigger: CGTGGCCCTACATGACTGTAATGGTGATGTGAACAAAGCTATCAATATACTGTTGGAAGGGAATTCTGACACCACTTCATGGGAGACTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000134782.2
CDS CAA 72 bp GTGTCAGAATTCCCTTCCAACAGTATATTGATAGCTTaGTTCACATCACCATTACAGTCATGTAGGGCCACG +
Preference number: 6 (lower is better)
Translates to: VSEFPSNSILIA*FTSPLQSCRAT
Trigger: CGTGGCCCTACATGACTGTAATGGTGATGTGAACAAAGCTATCAATATACTGTTGGAAGGGAATTCTGACAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000134782.2
CDS CAA 72 bp CCGGCGCTTAGGAAGTTTAATATGTTTGGGCTGTGGTaGGTGGGCAGATACAATATTTTCAACAGTCATGTT +
Preference number: 6 (lower is better)
Translates to: PALRKFNMFGLW*VGRYNIFNSHV
Trigger: AACATGACTGTTGAAAATATTGTATCTGCCCACCAACCACAGCCCAAACATATTAAACTTCCTAAGCGCCGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CAA 90 bp CATGAAGTGGTGTCAGAATTCCCTTCCAACAGTATATTGATAGCTTaGTTCACATCACCATTACAGTCATGTAGGGCCACGATGCATTCA +
Preference number: 6 (lower is better)
Translates to: HEVVSEFPSNSILIA*FTSPLQSCRATMHS
Trigger: TGAATGCATCGTGGCCCTACATGACTGTAATGGTGATGTGAACAAAGCTATCAATATACTGTTGGAAGGGAATTCTGACACCACTTCATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000134782.2
CDS CCA 72 bp CGGCGCTTAGGAAGTTTAATATGTTTGGGCTGTGGTTaGTGGGCAGATACAATATTTTCAACAGTCATGTTA +
Preference number: 6 (lower is better)
Translates to: RRLGSLICLGCG*WADTIFSTVML
Trigger: TAACATGACTGTTGAAAATATTGTATCTGCCCACCAACCACAGCCCAAACATATTAAACTTCCTAAGCGCCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS GCA 72 bp GCAGATACAATATTTTCAACAGTCATGTTAGGAAGCTaGAAAAGTCTGCTAACAGTAGAAGGACCATCTCCA +
Preference number: 6 (lower is better)
Translates to: ADTIFSTVMLGS*KSLLTVEGPSP
Trigger: TGGAGATGGTCCTTCTACTGTTAGCAGACTTTTGCAGCTTCCTAACATGACTGTTGAAAATATTGTATCTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CCA 72 bp CGCTTAGGAAGTTTAATATGTTTGGGCTGTGGTTGGTaGGCAGATACAATATTTTCAACAGTCATGTTAGGA +
Preference number: 6 (lower is better)
Translates to: RLGSLICLGCGW*ADTIFSTVMLG
Trigger: TCCTAACATGACTGTTGAAAATATTGTATCTGCCCACCAACCACAGCCCAAACATATTAAACTTCCTAAGCG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
CDS CAA 72 bp CATGAAGTGGTGTCAGAATTCCCTTCCAACAGTATATaGATAGCTTTGTTCACATCACCATTACAGTCATGT +
Preference number: 6 (lower is better)
Translates to: HEVVSEFPSNSI*IALFTSPLQSC
Trigger: ACATGACTGTAATGGTGATGTGAACAAAGCTATCAATATACTGTTGGAAGGGAATTCTGACACCACTTCATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030143.13
ENSMUST00000108068.8
ENSMUST00000134782.2