Pregenerated sensors for UBALD2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050628Ensembl transcript IDs: ENSMUST00000057676.7
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACCCTCCTGGGTGCACCTCCTTTGGCGGTGGGGCTTCCTAATGGCTaGCACGCCTTCTCACAGAGCAGCACAGCCACGCGGCTGCAAGCT | + |
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Preference number: 1 (lower is better) Translates to: TLLGAPPLAVGLPNG*HAFSQSSTATRLQA Trigger: AGCTTGCAGCCGCGTGGCTGTGCTGCTCTGTGAGAAGGCGTGCCAGCCATTAGGAAGCCCCACCGCCAAAGGAGGTGCACCCAGGAGGGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| 3UTR CCA 90 bp | CAGACTCTCCTGAGTGCTGGTCCTCTGGCCTGGACACACAGAGACTaGGAGCCTGTCGGACAGTTAGAACAGGGAAGGGGCAGAAGCACC | + |
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Preference number: 1 (lower is better) Translates to: QTLLSAGPLAWTHRD*EPVGQLEQGRGRST Trigger: GGTGCTTCTGCCCCTTCCCTGTTCTAACTGTCCGACAGGCTCCCAGTCTCTGTGTGTCCAGGCCAGAGGACCAGCACTCAGGAGAGTCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| 3UTR GCA 90 bp | CTAATGGCTGGCACGCCTTCTCACAGAGCAGCACAGCCACGCGGCTaGAAGCTCGCTCCATCTGTGAACACCCTTTTGTTCCCCTCAATT | + |
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Preference number: 1 (lower is better) Translates to: LMAGTPSHRAAQPRG*KLAPSVNTLLFPSI Trigger: AATTGAGGGGAACAAAAGGGTGTTCACAGATGGAGCGAGCTTGCAGCCGCGTGGCTGTGCTGCTCTGTGAGAAGGCGTGCCAGCCATTAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| 3UTR CCA 90 bp | CTGCAAGCTCGCTCCATCTGTGAACACCCTTTTGTTCCCCTCAATTaGGCAGAGAAAGAGGTGCTGGCAAGGAATGTGAGCCTTGCCTCT | + |
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Preference number: 1 (lower is better) Translates to: LQARSICEHPFVPLN*AEKEVLARNVSLAS Trigger: AGAGGCAAGGCTCACATTCCTTGCCAGCACCTCTTTCTCTGCCCAATTGAGGGGAACAAAAGGGTGTTCACAGATGGAGCGAGCTTGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| 3UTR-3UTR GCA 90 bp | ATCTGTGAACACCCTTTTGTTCCCCTCAATTGGGCAGAGAAAGAGGTGCTGGCACCCTGGACTGCCCCCTaGTCCAGCCCAGTGGCGTCC | + |
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Preference number: 2 (lower is better) Translates to: ICEHPFVPLNWAEKEVLAPWTAP*SSPVAS Trigger: GGACGCCACTGGGCTGGAGCAGGGGGCAGTCCAGGG...TGCCAGCACCTCTTTCTCTGCCCAATTGAGGGGAACAAAAGGGTGTTCACAGAT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| 3UTR CAA 90 bp | GCACAGCCACGCGGCTGCAAGCTCGCTCCATCTGTGAACACCCTTTaGTTCCCCTCAATTGGGCAGAGAAAGAGGTGCTGGCAAGGAATG | + |
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Preference number: 2 (lower is better) Translates to: AQPRGCKLAPSVNTL*FPSIGQRKRCWQGM Trigger: CATTCCTTGCCAGCACCTCTTTCTCTGCCCAATTGAGGGGAACAAAAGGGTGTTCACAGATGGAGCGAGCTTGCAGCCGCGTGGCTGTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| 3UTR-3UTR TCA 90 bp | CAGCCACGCGGCTGCAAGCTCGCTCCATCTGTGAACACCCTTTTGTTCCCCTCACCTAAGAGAAACTCCTaGAGAACCCAAGTGGCTCAG | + |
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Preference number: 2 (lower is better) Translates to: QPRGCKLAPSVNTLLFPSPKRNS*RTQVAQ Trigger: CTGAGCCACTTGGGTTCTTCAGGAGTTTCTCTTAGG...TGAGGGGAACAAAAGGGTGTTCACAGATGGAGCGAGCTTGCAGCCGCGTGGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| 3UTR-3UTR TCA 90 bp | GGCTGCAAGCTCGCTCCATCTGTGAACACCCTTTTGTTCCCCTCAATTGGGCAGTGCTGGCAAGGAATGTaGGCCTTGCCTCTGACAGGA | + |
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Preference number: 2 (lower is better) Translates to: GCKLAPSVNTLLFPSIGQCWQGM*ALPLTG Trigger: TCCTGTCAGAGGCAAGGCTCACATTCCTTGCCAGCA...CTGCCCAATTGAGGGGAACAAAAGGGTGTTCACAGATGGAGCGAGCTTGCAGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| 3UTR-3UTR GCA 90 bp | GAACAGGGAAGGGGCAGAAGCACCCACATCAGAGGGCAGCCAAGTCTTGACATCTATAAAATCTTCCAGTaGGATCGTGAAGAAACCCCC | + |
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Preference number: 2 (lower is better) Translates to: EQGRGRSTHIRGQPSLDIYKIFQ*DREETP Trigger: GGGGGTTTCTTCACGATCGCACTGGAAGATTTTATA...GATGTCAAGACTTGGCTGCCCTCTGATGTGGGTGCTTCTGCCCCTTCCCTGTTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| 3UTR CCA 72 bp | CAAAGGCAGACTCTCCTGAGTGCTGGTCCTCTGGCCTaGACACACAGAGACTGGGAGCCTGTCGGACAGTTA | + |
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Preference number: 3 (lower is better) Translates to: QRQTLLSAGPLA*THRDWEPVGQL Trigger: TAACTGTCCGACAGGCTCCCAGTCTCTGTGTGTCCAGGCCAGAGGACCAGCACTCAGGAGAGTCTGCCTTTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| 3UTR CCA 72 bp | TGGGAACTCAATCCAAAGGCAGACTCTCCTGAGTGCTaGTCCTCTGGCCTGGACACACAGAGACTGGGAGCC | + |
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Preference number: 3 (lower is better) Translates to: WELNPKADSPEC*SSGLDTQRLGA Trigger: GGCTCCCAGTCTCTGTGTGTCCAGGCCAGAGGACCAGCACTCAGGAGAGTCTGCCTTTGGATTGAGTTCCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| 3UTR TCA 72 bp | TCTAATTTGGGAACTCAATCCAAAGGCAGACTCTCCTaGGTGCTGGTCCTCTGGCCTGGACACACAGAGACT | + |
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Preference number: 3 (lower is better) Translates to: SNLGTQSKGRLS*VLVLWPGHTET Trigger: AGTCTCTGTGTGTCCAGGCCAGAGGACCAGCACTCAGGAGAGTCTGCCTTTGGATTGAGTTCCCAAATTAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| 3UTR TCA 72 bp | ACATCAGAGGGCAGCCAAGTCTTGACATCTAGCTGGTaGCAAGGTGACAAGTTTCAGAGTCAACAAGAGGCC | + |
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Preference number: 3 (lower is better) Translates to: TSEGSQVLTSSW*QGDKFQSQQEA Trigger: GGCCTCTTGTTGACTCTGAAACTTGTCACCTTGTCACCAGCTAGATGTCAAGACTTGGCTGCCCTCTGATGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| 3UTR TCA 72 bp | GTTTCAGAGTCAACAAGAGGCCACCACCAGCAGAGATaGAAATTGTCTACCAGCAATGGGGTAGAAGTCCAT | + |
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Preference number: 3 (lower is better) Translates to: VSESTRGHHQQR*KLSTSNGVEVH Trigger: ATGGACTTCTACCCCATTGCTGGTAGACAATTTTCATCTCTGCTGGTGGTGGCCTCTTGTTGACTCTGAAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| 3UTR CCA 72 bp | AAATTAAAATTGCACCCTGGTGCGATGACTCTAATTTaGGAACTCAATCCAAAGGCAGACTCTCCTGAGTGC | + |
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Preference number: 3 (lower is better) Translates to: KLKLHPGAMTLI*ELNPKADSPEC Trigger: GCACTCAGGAGAGTCTGCCTTTGGATTGAGTTCCCAAATTAGAGTCATCGCACCAGGGTGCAATTTTAATTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| CDS-3UTR CCA 90 bp | TGGCGGTGGGGCTTCCTAATGGCTGGCACGCCTTCTCACAGAGCAGCACAGCCAGGGCCACGTGGGCTGTaGGCAGTGGAGATGGAAGGT | + |
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Preference number: 4 (lower is better) Translates to: WRWGFLMAGTPSHRAAQPGPRGL*AVEMEG Trigger: ACCTTCCATCTCCACTGCCCACAGCCCACGTGGCCC...TGGCTGTGCTGCTCTGTGAGAAGGCGTGCCAGCCATTAGGAAGCCCCACCGCCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| CDS-3UTR GCA 90 bp | TGGCGGTGGGGCTTCCTAATGGCTGGCACGCCTTCTCACAGAGCAGCACAGCCAGGGGTACACATCATCTaGGGGTGGTGGTGGCTGTTG | + |
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Preference number: 4 (lower is better) Translates to: WRWGFLMAGTPSHRAAQPGVHII*GWWWLL Trigger: CAACAGCCACCACCACCCGCAGATGATGTGTACCCC...TGGCTGTGCTGCTCTGTGAGAAGGCGTGCCAGCCATTAGGAAGCCCCACCGCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| CDS-3UTR GCA 90 bp | AGGGAAGGGGCAGAAGCACCCACATCAGAGGGCAGCCAAGTCTTGACATCTAGCCCATGGGGCTGCTGCTaGTGCTCTGCAGGCCCTCAG | + |
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Preference number: 4 (lower is better) Translates to: REGAEAPTSEGSQVLTSSPWGCC*CSAGPQ Trigger: CTGAGGGCCTGCAGAGCAGCAGCAGCAGCCCCATGG...GCTAGATGTCAAGACTTGGCTGCCCTCTGATGTGGGTGCTTCTGCCCCTTCCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| CDS-3UTR CCA 90 bp | GAACAGGGAAGGGGCAGAAGCACCCACATCAGAGGGCAGCCAAGTCTTGACATCCACCTGGTGATTGGGTaGGGATGCGGCCCAGAAGGG | + |
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Preference number: 4 (lower is better) Translates to: EQGRGRSTHIRGQPSLDIHLVIG*GCGPEG Trigger: CCCTTCTGGGCCGCATCCCCACCCAATCACCAGGTG...GATGTCAAGACTTGGCTGCCCTCTGATGTGGGTGCTTCTGCCCCTTCCCTGTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| CDS-3UTR CCA 90 bp | GCCACGCGGCTGCAAGCTCGCTCCATCTGTGAACACCCTTTTGTTCCCCTCAATAGGGCACCTGGTGATTaGGTGGGGATGCGGCCCAGA | + |
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Preference number: 4 (lower is better) Translates to: ATRLQARSICEHPFVPLNRAPGD*VGMRPR Trigger: TCTGGGCCGCATCCCCACCCAATCACCAGGTGCCCT...ATTGAGGGGAACAAAAGGGTGTTCACAGATGGAGCGAGCTTGCAGCCGCGTGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| CDS-3UTR CCA 90 bp | GCCACGCGGCTGCAAGCTCGCTCCATCTGTGAACACCCTTTTGTTCCCCTCAATGTGGGCTGTGGGCAGTaGAGATGGAAGGTGTTGGGG | + |
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Preference number: 4 (lower is better) Translates to: ATRLQARSICEHPFVPLNVGCGQ*RWKVLG Trigger: CCCCAACACCTTCCATCTCCACTGCCCACAGCCCAC...ATTGAGGGGAACAAAAGGGTGTTCACAGATGGAGCGAGCTTGCAGCCGCGTGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| CDS-3UTR TCA 90 bp | AGGCCACCACCAGCAGAGATGAAAATTGTCTACCAGCAATGGGGTAGAAGTCCAATCCAGGGCACCTGGTaGTTGGGTGGGGATGCGGCC | + |
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Preference number: 4 (lower is better) Translates to: RPPPAEMKIVYQQWGRSPIQGTW*LGGDAA Trigger: GGCCGCATCCCCACCCAATCACCAGGTGCCCTGGAT...TGGACTTCTACCCCATTGCTGGTAGACAATTTTCATCTCTGCTGGTGGTGGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| CDS-3UTR GCA 90 bp | CAGCCACGCGGCTGCAAGCTCGCTCCATCTGTGAACACCCTTTTGTTCCCCTCAGGAGAACATGGCCAATaGATCAGGGAAGTTGGGTGG | + |
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Preference number: 4 (lower is better) Translates to: QPRGCKLAPSVNTLLFPSGEHGQ*IREVGW Trigger: CCACCCAACTTCCCTGATGCATTGGCCATGTTCTCC...TGAGGGGAACAAAAGGGTGTTCACAGATGGAGCGAGCTTGCAGCCGCGTGGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| CDS-3UTR GCA 90 bp | CCTCTGACAGGAACACGTGTGCAGGCCCCACTCTCACAAACATTAGCTAAATTTGGAACAGGCCACGGCTaGCATGGGGCTGCTGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: PLTGTRVQAPLSQTLAKFGTGHG*HGAAAA Trigger: AGCAGCAGCAGCCCCATGGCAGCCGTGGCCTGTTCC...AAATTTAGCTAATGTTTGTGAGAGTGGGGCCTGCACACGTGTTCCTGTCAGAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| CDS-3UTR GCA 90 bp | AGTCAACAAGAGGCCACCACCAGCAGAGATGAAAATTGTCTACCAGCAATGGGGCTGCTGCTGCTGCTCTaGAGGCCCTCAGAGGTTCGA | + |
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Preference number: 4 (lower is better) Translates to: SQQEATTSRDENCLPAMGLLLLL*RPSEVR Trigger: TCGAACCTCTGAGGGCCTGCAGAGCAGCAGCAGCAG...CCCCATTGCTGGTAGACAATTTTCATCTCTGCTGGTGGTGGCCTCTTGTTGACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| CDS-3UTR GCA 90 bp | ATGACTCTAATTTGGGAACTCAATCCAAAGGCAGACTCTCCTGAGTGCTGGTCCCTGGCCATCCATGGCTaGCATGGCTTTCTGAGGGGC | + |
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Preference number: 4 (lower is better) Translates to: MTLIWELNPKADSPECWSLAIHG*HGFLRG Trigger: GCCCCTCAGAAAGCCATGGCAGCCATGGATGGCCAG...GGACCAGCACTCAGGAGAGTCTGCCTTTGGATTGAGTTCCCAAATTAGAGTCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| CDS-3UTR CCA 90 bp | ATGACTCTAATTTGGGAACTCAATCCAAAGGCAGACTCTCCTGAGTGCTGGTCCGGAGATGGAAGGTGTTaGGGGAAGAGGGCGGGATCC | + |
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Preference number: 4 (lower is better) Translates to: MTLIWELNPKADSPECWSGDGRC*GKRAGS Trigger: GGATCCCGCCCTCTTCCCCCAACACCTTCCATCTCC...GGACCAGCACTCAGGAGAGTCTGCCTTTGGATTGAGTTCCCAAATTAGAGTCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| CDS-3UTR CCA 90 bp | ATGACTCTAATTTGGGAACTCAATCCAAAGGCAGACTCTCCTGAGTGCTGGTCCCACATCATCTGCGGGTaGTGGTGGCTGTTGGGAATG | + |
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Preference number: 4 (lower is better) Translates to: MTLIWELNPKADSPECWSHIICG*WWLLGM Trigger: CATTCCCAACAGCCACCACCACCCGCAGATGATGTG...GGACCAGCACTCAGGAGAGTCTGCCTTTGGATTGAGTTCCCAAATTAGAGTCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| CDS-3UTR CCA 90 bp | ATGACTCTAATTTGGGAACTCAATCCAAAGGCAGACTCTCCTGAGTGCTGGTCCTGTGGGCAGTGGAGATaGAAGGTGTTGGGGGAAGAG | + |
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Preference number: 4 (lower is better) Translates to: MTLIWELNPKADSPECWSCGQWR*KVLGEE Trigger: CTCTTCCCCCAACACCTTCCATCTCCACTGCCCACA...GGACCAGCACTCAGGAGAGTCTGCCTTTGGATTGAGTTCCCAAATTAGAGTCAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| CDS-3UTR CCA 90 bp | ATGACTCTAATTTGGGAACTCAATCCAAAGGCAGACTCTCCTGAGTGCTGGTCCATCTCTGGCCATCCATaGCTGCCATGGCTTTCTGAG | + |
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Preference number: 4 (lower is better) Translates to: MTLIWELNPKADSPECWSISGHP*LPWLSE Trigger: CTCAGAAAGCCATGGCAGCCATGGATGGCCAGAGAT...GGACCAGCACTCAGGAGAGTCTGCCTTTGGATTGAGTTCCCAAATTAGAGTCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| CDS-3UTR CCA 90 bp | ATCTGTGAACACCCTTTTGTTCCCCTCAATTGGGCAGAGAAAGAGGTGCTGGCAGGTGGTGGTGGCTGTTaGGAATGTTGCTTTCTTGAA | + |
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Preference number: 4 (lower is better) Translates to: ICEHPFVPLNWAEKEVLAGGGGC*ECCFLE Trigger: TTCAAGAAAGCAACATTCCCAACAGCCACCACCACC...TGCCAGCACCTCTTTCTCTGCCCAATTGAGGGGAACAAAAGGGTGTTCACAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| CDS-3UTR CCA 90 bp | AGTCAACAAGAGGCCACCACCAGCAGAGATGAAAATTGTCTACCAGCAATGGGGGAAGCTTGGAGAACATaGCCAATGCATCAGGGAAGT | + |
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Preference number: 4 (lower is better) Translates to: SQQEATTSRDENCLPAMGEAWRT*PMHQGS Trigger: ACTTCCCTGATGCATTGGCCATGTTCTCCAAGCTTC...CCCCATTGCTGGTAGACAATTTTCATCTCTGCTGGTGGTGGCCTCTTGTTGACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| CDS-3UTR CCA 90 bp | CCTCTGACAGGAACACGTGTGCAGGCCCCACTCTCACAAACATTAGCTAAATTTCAGAGGTTCGAAGCTTaGAGAACATGGCCAATGCAT | + |
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Preference number: 4 (lower is better) Translates to: PLTGTRVQAPLSQTLAKFQRFEA*RTWPMH Trigger: ATGCATTGGCCATGTTCTCCAAGCTTCGAACCTCTG...AAATTTAGCTAATGTTTGTGAGAGTGGGGCCTGCACACGTGTTCCTGTCAGAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| CDS-3UTR CAA 90 bp | CAGCCACGCGGCTGCAAGCTCGCTCCATCTGTGAACACCCTTTTGTTCCCCTCACTGCCAGTGCGCCGCTaGCAGCAGCTGCTGCGCCTG | + |
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Preference number: 5 (lower is better) Translates to: QPRGCKLAPSVNTLLFPSLPVRR*QQLLRL Trigger: CAGGCGCAGCAGCTGCTGCAAGCGGCGCACTGGCAG...TGAGGGGAACAAAAGGGTGTTCACAGATGGAGCGAGCTTGCAGCCGCGTGGCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| CDS-3UTR CAA 90 bp | CAGCCACGCGGCTGCAAGCTCGCTCCATCTGTGAACACCCTTTTGTTCCCCTCAAATGCATCAGGGAAGTaGGGTGGTGTAGCAGGGGTG | + |
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Preference number: 5 (lower is better) Translates to: QPRGCKLAPSVNTLLFPSNASGK*GGVAGV Trigger: CACCCCTGCTACACCACCCAACTTCCCTGATGCATT...TGAGGGGAACAAAAGGGTGTTCACAGATGGAGCGAGCTTGCAGCCGCGTGGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| CDS CCA 90 bp | GGGTGTTGCTGGGGGTACACATCATCTGCGGGTGGTGGTGGCTGTTaGGAATGTTGCTTTCTTGAAAGAACGTGCTTAGGGCGGTCTCGA | + |
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Preference number: 5 (lower is better) Translates to: GCCWGYTSSAGGGGC*ECCFLERTCLGRSR Trigger: TCGAGACCGCCCTAAGCACGTTCTTTCAAGAAAGCAACATTCCCAACAGCCACCACCACCCGCAGATGATGTGTACCCCCAGCAACACCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| CDS-3UTR CAA 90 bp | ATCTGTGAACACCCTTTTGTTCCCCTCAATTGGGCAGAGAAAGAGGTGCTGGCAGGTGTAGCAGGGGTGTaGCTGGGGGTACACATCATC | + |
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Preference number: 5 (lower is better) Translates to: ICEHPFVPLNWAEKEVLAGVAGV*LGVHII Trigger: GATGATGTGTACCCCCAGCAACACCCCTGCTACACC...TGCCAGCACCTCTTTCTCTGCCCAATTGAGGGGAACAAAAGGGTGTTCACAGAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| CDS-3UTR CAA 90 bp | ATGACTCTAATTTGGGAACTCAATCCAAAGGCAGACTCTCCTGAGTGCTGGTCCTCAGAGGTTCGAAGCTaGGAGAACATGGCCAATGCA | + |
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Preference number: 5 (lower is better) Translates to: MTLIWELNPKADSPECWSSEVRS*ENMANA Trigger: TGCATTGGCCATGTTCTCCAAGCTTCGAACCTCTGA...GGACCAGCACTCAGGAGAGTCTGCCTTTGGATTGAGTTCCCAAATTAGAGTCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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| CDS CCA 72 bp | TGGGGGTACACATCATCTGCGGGTGGTGGTGGCTGTTaGGAATGTTGCTTTCTTGAAAGAACGTGCTTAGGG | + |
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Preference number: 6 (lower is better) Translates to: WGYTSSAGGGGC*ECCFLERTCLG Trigger: CCCTAAGCACGTTCTTTCAAGAAAGCAACATTCCCAACAGCCACCACCACCCGCAGATGATGTGTACCCCCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057676.7 |
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