Pregenerated sensors for UBALD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039568Ensembl transcript IDs: ENSMUST00000037843.7
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCTGGGGGTGCCTGCGCTGTGAACTTGCATGCGTGCGTGCAGCTGTaGGTGCCGGCACAAGACTGCCTGGCTAGAGTCCAGTCTCTCCCC | + |
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Preference number: 1 (lower is better) Translates to: AGGACAVNLHACVQL*VPAQDCLARVQSLP Trigger: GGGGAGAGACTGGACTCTAGCCAGGCAGTCTTGTGCCGGCACGCACAGCTGCACGCACGCATGCAAGTTCACAGCGCAGGCACCCCCAGC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| 3UTR TCA 90 bp | AGCCACTTGGAGTCAGATCCAGGCGAGCTGGGGGTGCCTGCGCTGTaGACTTGCATGCGTGCGTGCAGCTGTGCGTGCCGGCACAAGACT | + |
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Preference number: 1 (lower is better) Translates to: SHLESDPGELGVPAL*TCMRACSCACRHKT Trigger: AGTCTTGTGCCGGCACGCACAGCTGCACGCACGCATGCAAGTTCACAGCGCAGGCACCCCCAGCTCGCCTGGATCTGACTCCAAGTGGCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| 3UTR CCA 90 bp | GCTGCTTGGTCTCCAAGGTGCTGCCCACCAGGCACCCAAGCCACTTaGAGTCAGATCCAGGCGAGCTGGGGGTGCCTGCGCTGTGAACTT | + |
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Preference number: 1 (lower is better) Translates to: AAWSPRCCPPGTQAT*SQIQASWGCLRCEL Trigger: AAGTTCACAGCGCAGGCACCCCCAGCTCGCCTGGATCTGACTCCAAGTGGCTTGGGTGCCTGGTGGGCAGCACCTTGGAGACCAAGCAGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| 3UTR CCA 90 bp | AGAGTCCTGGAGTTTCCCATAATCCTTTGCAGGAAACAGCAATGCTaGCAGATAAGGAGGTGGAGTGAGACAGAGCCCTTCAGACAACAG | + |
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Preference number: 1 (lower is better) Translates to: RVLEFPIILCRKQQC*QIRRWSETEPFRQQ Trigger: CTGTTGTCTGAAGGGCTCTGTCTCACTCCACCTCCTTATCTGCCAGCATTGCTGTTTCCTGCAAAGGATTATGGGAAACTCCAGGACTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| 3UTR GCA 90 bp | GTTGCTTTTGAAGAGCGACATACATATAAATACATAAGACACAGCTaGACGCACACATGCGGAGAAGGCTCTGCATTCCCATGGGTAGGG | + |
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Preference number: 1 (lower is better) Translates to: VAFEERHTYKYIRHS*THTCGEGSAFPWVG Trigger: CCCTACCCATGGGAATGCAGAGCCTTCTCCGCATGTGTGCGTGCAGCTGTGTCTTATGTATTTATATGTATGTCGCTCTTCAAAAGCAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| 3UTR-3UTR GCA 90 bp | AGGTGGAGTGAGACAGAGCCCTTCAGACAACAGGGTGGTGGGCCAAGGGGCTTGCGAGCTGGGGGTGCCTaGGCTGTGAACTTGCATGCG | + |
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Preference number: 2 (lower is better) Translates to: RWSETEPFRQQGGGPRGLRAGGA*AVNLHA Trigger: CGCATGCAAGTTCACAGCGCAGGCACCCCCAGCTCG...CAAGCCCCTTGGCCCACCACCCTGTTGTCTGAAGGGCTCTGTCTCACTCCACCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| 3UTR-3UTR CCA 90 bp | GGTGGTGGGCCAAGGGGCTTGGGGCTCACTCTAACATGCAAAGTCCAGCTGCCCGGCACCCAAGCCACTTaGAGTCAGATCCAGGCGAGC | + |
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Preference number: 2 (lower is better) Translates to: GGGPRGLGLTLTCKVQLPGTQAT*SQIQAS Trigger: GCTCGCCTGGATCTGACTCCAAGTGGCTTGGGTGCC...GGGCAGCTGGACTTTGCATGTTAGAGTGAGCCCCAAGCCCCTTGGCCCACCACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| 3UTR-3UTR CCA 90 bp | GGTGGTGGGCCAAGGGGCTTGGGGCTCACTCTAACATGCAAAGTCCAGCTGCCCGCTGGGATGGCTGCTTaGTCTCCAAGGTGCTGCCCA | + |
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Preference number: 2 (lower is better) Translates to: GGGPRGLGLTLTCKVQLPAGMAA*SPRCCP Trigger: TGGGCAGCACCTTGGAGACCAAGCAGCCATCCCAGC...GGGCAGCTGGACTTTGCATGTTAGAGTGAGCCCCAAGCCCCTTGGCCCACCACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| 3UTR-3UTR CCA 90 bp | GGGTGGTGGGCCAAGGGGCTTGGGGCTCACTCTAACATGCAAAGTCCAGCTGCCCTGAAACACTCCAGGTaGTGGGGCCAGGCAGGTAAG | + |
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Preference number: 2 (lower is better) Translates to: GWWAKGLGAHSNMQSPAALKHSR*WGQAGK Trigger: CTTACCTGCCTGGCCCCACCACCTGGAGTGTTTCAG...GGCAGCTGGACTTTGCATGTTAGAGTGAGCCCCAAGCCCCTTGGCCCACCACCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| 3UTR-3UTR CCA 90 bp | TATAAATACATAAGACACAGCTGCACGCACACATGCGGAGAAGGCTCTGCATTCAAACACTCCAGGTGGTaGGGCCAGGCAGGTAAGTCT | + |
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Preference number: 2 (lower is better) Translates to: YKYIRHSCTHTCGEGSAFKHSRW*GQAGKS Trigger: AGACTTACCTGCCTGGCCCCACCACCTGGAGTGTTT...GAATGCAGAGCCTTCTCCGCATGTGTGCGTGCAGCTGTGTCTTATGTATTTATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| 3UTR TCA 72 bp | GAGTCAGATCCAGGCGAGCTGGGGGTGCCTGCGCTGTaGACTTGCATGCGTGCGTGCAGCTGTGCGTGCCGG | + |
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Preference number: 3 (lower is better) Translates to: ESDPGELGVPAL*TCMRACSCACR Trigger: CCGGCACGCACAGCTGCACGCACGCATGCAAGTTCACAGCGCAGGCACCCCCAGCTCGCCTGGATCTGACTC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| 3UTR CCA 72 bp | TCTCCAAGGTGCTGCCCACCAGGCACCCAAGCCACTTaGAGTCAGATCCAGGCGAGCTGGGGGTGCCTGCGC | + |
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Preference number: 3 (lower is better) Translates to: SPRCCPPGTQAT*SQIQASWGCLR Trigger: GCGCAGGCACCCCCAGCTCGCCTGGATCTGACTCCAAGTGGCTTGGGTGCCTGGTGGGCAGCACCTTGGAGA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| 3UTR GCA 72 bp | CATGCGTGCGTGCAGCTGTGCGTGCCGGCACAAGACTaGCTGGCTAGAGTCCAGTCTCTCCCCTCCAGGGCT | + |
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Preference number: 3 (lower is better) Translates to: HACVQLCVPAQD*LARVQSLPSRA Trigger: AGCCCTGGAGGGGAGAGACTGGACTCTAGCCAGGCAGTCTTGTGCCGGCACGCACAGCTGCACGCACGCATG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| 3UTR GCA 72 bp | CCACTTGGAGTCAGATCCAGGCGAGCTGGGGGTGCCTaGGCTGTGAACTTGCATGCGTGCGTGCAGCTGTGC | + |
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Preference number: 3 (lower is better) Translates to: PLGVRSRRAGGA*AVNLHACVQLC Trigger: GCACAGCTGCACGCACGCATGCAAGTTCACAGCGCAGGCACCCCCAGCTCGCCTGGATCTGACTCCAAGTGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| 3UTR CCA 72 bp | AGGTGGTGGGGCCAGGCAGGTAAGTCTTCGCTGGGATaGCTGCTTGGTCTCCAAGGTGCTGCCCACCAGGCA | + |
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Preference number: 3 (lower is better) Translates to: RWWGQAGKSSLG*LLGLQGAAHQA Trigger: TGCCTGGTGGGCAGCACCTTGGAGACCAAGCAGCCATCCCAGCGAAGACTTACCTGCCTGGCCCCACCACCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| 3UTR-3UTR CAA 90 bp | TGGCAGATAAGGAGGTGGAGTGAGACAGAGCCCTTCAGACAACAGGGTGGTGGGCGCTGGGATGGCTGCTaGGTCTCCAAGGTGCTGCCC | + |
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Preference number: 3 (lower is better) Translates to: WQIRRWSETEPFRQQGGGRWDGC*VSKVLP Trigger: GGGCAGCACCTTGGAGACCAAGCAGCCATCCCAGCG...CCCACCACCCTGTTGTCTGAAGGGCTCTGTCTCACTCCACCTCCTTATCTGCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| 3UTR GCA 72 bp | AAGACACAGCTGCACGCACACATGCGGAGAAGGCTCTaGATTCCCATGGGTAGGGATCTAGGCCTATGGCCC | + |
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Preference number: 3 (lower is better) Translates to: KTQLHAHMRRRL*IPMGRDLGLWP Trigger: GGGCCATAGGCCTAGATCCCTACCCATGGGAATGCAGAGCCTTCTCCGCATGTGTGCGTGCAGCTGTGTCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| 3UTR CCA 72 bp | CTGCCACCAAGTGATTCTCTGAAACACTCCAGGTGGTaGGGCCAGGCAGGTAAGTCTTCGCTGGGATGGCTG | + |
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Preference number: 3 (lower is better) Translates to: LPPSDSLKHSRW*GQAGKSSLGWL Trigger: CAGCCATCCCAGCGAAGACTTACCTGCCTGGCCCCACCACCTGGAGTGTTTCAGAGAATCACTTGGTGGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| 3UTR GCA 72 bp | CTGGAGTTTCCCATAATCCTTTGCAGGAAACAGCAATaGTGGCAGATAAGGAGGTGGAGTGAGACAGAGCCC | + |
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Preference number: 3 (lower is better) Translates to: LEFPIILCRKQQ*WQIRRWSETEP Trigger: GGGCTCTGTCTCACTCCACCTCCTTATCTGCCAGCATTGCTGTTTCCTGCAAAGGATTATGGGAAACTCCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| 3UTR CCA 72 bp | GAGTTTCCCATAATCCTTTGCAGGAAACAGCAATGCTaGCAGATAAGGAGGTGGAGTGAGACAGAGCCCTTC | + |
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Preference number: 3 (lower is better) Translates to: EFPIILCRKQQC*QIRRWSETEPF Trigger: GAAGGGCTCTGTCTCACTCCACCTCCTTATCTGCCAGCATTGCTGTTTCCTGCAAAGGATTATGGGAAACTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| 3UTR GCA 72 bp | ACATATAAATACATAAGACACAGCTGCACGCACACATaGGGAGAAGGCTCTGCATTCCCATGGGTAGGGATC | + |
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Preference number: 3 (lower is better) Translates to: TYKYIRHSCTHT*GEGSAFPWVGI Trigger: GATCCCTACCCATGGGAATGCAGAGCCTTCTCCGCATGTGTGCGTGCAGCTGTGTCTTATGTATTTATATGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| CDS-3UTR TCA 90 bp | TGCGTGCCGGCACAAGACTGCCTGGCTAGAGTCCAGTCTCTCCCCTCCAGGGCTTGGGCCTCCTGGGGGTaGGGCTGCAGTTGGCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: CVPAQDCLARVQSLPSRAWASWG*GCSWPA Trigger: AGCTGGCCAACTGCAGCCTCACCCCCAGGAGGCCCA...AGCCCTGGAGGGGAGAGACTGGACTCTAGCCAGGCAGTCTTGTGCCGGCACGCA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| CDS-3UTR GCA 90 bp | CACCAGGCACCCAAGCCACTTGGAGTCAGATCCAGGCGAGCTGGGGGTGCCTGCGTGGCATGGGGGAAGTaGGGTGGGGGTGATGTGGCC | + |
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Preference number: 4 (lower is better) Translates to: HQAPKPLGVRSRRAGGACVAWGK*GGGDVA Trigger: GGCCACATCACCCCCACCGCACTTCCCCCATGCCAC...GCAGGCACCCCCAGCTCGCCTGGATCTGACTCCAAGTGGCTTGGGTGCCTGGTG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| CDS-3UTR TCA 90 bp | GGAGGTGGAGTGAGACAGAGCCCTTCAGACAACAGGGTGGTGGGCCAAGGGGCTAGCAGTTGCTTCGCCTaGTCGGCCGCACAGCCCGCC | + |
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Preference number: 4 (lower is better) Translates to: GGGVRQSPSDNRVVGQGASSCFA*SAAQPA Trigger: GGCGGGCTGTGCGGCCGATCAGGCGAAGCAACTGCT...AGCCCCTTGGCCCACCACCCTGTTGTCTGAAGGGCTCTGTCTCACTCCACCTCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| 3UTR CAA 72 bp | AGATCCAGGCGAGCTGGGGGTGCCTGCGCTGTGAACTaGCATGCGTGCGTGCAGCTGTGCGTGCCGGCACAA | + |
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Preference number: 4 (lower is better) Translates to: RSRRAGGACAVN*HACVQLCVPAQ Trigger: TTGTGCCGGCACGCACAGCTGCACGCACGCATGCAAGTTCACAGCGCAGGCACCCCCAGCTCGCCTGGATCT 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| CDS-3UTR TCA 90 bp | TGGCTGCTTGGTCTCCAAGGTGCTGCCCACCAGGCACCCAAGCCACTTGGAGTCTCTGAGGTGGCCTGTTaGGGAGCCAGGGGAGGCCAG | + |
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Preference number: 4 (lower is better) Translates to: WLLGLQGAAHQAPKPLGVSEVAC*GARGGQ Trigger: CTGGCCTCCCCTGGCTCCTCAACAGGCCACCTCAGA...GACTCCAAGTGGCTTGGGTGCCTGGTGGGCAGCACCTTGGAGACCAAGCAGCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| CDS-3UTR CCA 90 bp | GGAGTGAGACAGAGCCCTTCAGACAACAGGGTGGTGGGCCAAGGGGCTTGGGGCGCCTCCATGGCAGGGTaGGCCCTTGGTTCTGAGGTG | + |
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Preference number: 4 (lower is better) Translates to: GVRQSPSDNRVVGQGAWGASMAG*ALGSEV Trigger: CACCTCAGAACCAAGGGCCCACCCTGCCATGGAGGC...GCCCCAAGCCCCTTGGCCCACCACCCTGTTGTCTGAAGGGCTCTGTCTCACTCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| CDS-3UTR TCA 90 bp | GCTGCTTGGTCTCCAAGGTGCTGCCCACCAGGCACCCAAGCCACTTGGAGTCAGGTGGGCCCTTGGTTCTaGGGTGGCCTGTTGAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: AAWSPRCCPPGTQATWSQVGPWF*GGLLRS Trigger: GCTCCTCAACAGGCCACCTCAGAACCAAGGGCCCAC...CTGACTCCAAGTGGCTTGGGTGCCTGGTGGGCAGCACCTTGGAGACCAAGCAGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| CDS-3UTR CCA 90 bp | GGGTGGTGGGCCAAGGGGCTTGGGGCTCACTCTAACATGCAAAGTCCAGCTGCCAAGCTGCCAGTGGCATaGGGGAAGTGCGGTGGGGGT | + |
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Preference number: 4 (lower is better) Translates to: GWWAKGLGAHSNMQSPAAKLPVA*GKCGGG Trigger: ACCCCCACCGCACTTCCCCCATGCCACTGGCAGCTT...GGCAGCTGGACTTTGCATGTTAGAGTGAGCCCCAAGCCCCTTGGCCCACCACCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| CDS-3UTR CCA 90 bp | TGCGTGCCGGCACAAGACTGCCTGGCTAGAGTCCAGTCTCTCCCCTCCAGGGCTCCCTTGGTTCTGAGGTaGCCTGTTGAGGAGCCAGGG | + |
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Preference number: 4 (lower is better) Translates to: CVPAQDCLARVQSLPSRAPLVLR*PVEEPG Trigger: CCCTGGCTCCTCAACAGGCCACCTCAGAACCAAGGG...AGCCCTGGAGGGGAGAGACTGGACTCTAGCCAGGCAGTCTTGTGCCGGCACGCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| CDS-3UTR GCA 90 bp | GGGTGGTGGGCCAAGGGGCTTGGGGCTCACTCTAACATGCAAAGTCCAGCTGCCTGGCCAGCTGGGTGTTaGAAAGCTGCCAGTGGCATG | + |
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Preference number: 4 (lower is better) Translates to: GWWAKGLGAHSNMQSPAAWPAGC*KAASGM Trigger: CATGCCACTGGCAGCTTTGCAACACCCAGCTGGCCA...GGCAGCTGGACTTTGCATGTTAGAGTGAGCCCCAAGCCCCTTGGCCCACCACCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| CDS-3UTR CCA 90 bp | AGGTGGTGGGGCCAGGCAGGTAAGTCTTCGCTGGGATGGCTGCTTGGTCTCCAAGCGTGGCAGGGGTGTTaGCGGGAGTGCACATCATCT | + |
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Preference number: 4 (lower is better) Translates to: RWWGQAGKSSLGWLLGLQAWQGC*RECTSS Trigger: AGATGATGTGCACTCCCGCCAACACCCCTGCCACGC...TTGGAGACCAAGCAGCCATCCCAGCGAAGACTTACCTGCCTGGCCCCACCACCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| CDS-3UTR CCA 90 bp | GGTGGTGGGGCCAGGCAGGTAAGTCTTCGCTGGGATGGCTGCTTGGTCTCCAAGCTGCAGTTGGCCAGCTaGGTGTTGCAAAGCTGCCAG | + |
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Preference number: 4 (lower is better) Translates to: GGGARQVSLRWDGCLVSKLQLAS*VLQSCQ Trigger: CTGGCAGCTTTGCAACACCCAGCTGGCCAACTGCAG...CTTGGAGACCAAGCAGCCATCCCAGCGAAGACTTACCTGCCTGGCCCCACCACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| CDS-3UTR TCA 90 bp | CACAGCTGCACGCACACATGCGGAGAAGGCTCTGCATTCCCATGGGTAGGGATCCCTGGAAAAAGGTGCTaGGGGCTGTCTCGAACTGCC | + |
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Preference number: 4 (lower is better) Translates to: HSCTHTCGEGSAFPWVGIPGKRC*GLSRTA Trigger: GGCAGTTCGAGACAGCCCTCAGCACCTTTTTCCAGG...GATCCCTACCCATGGGAATGCAGAGCCTTCTCCGCATGTGTGCGTGCAGCTGTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| CDS-3UTR CCA 90 bp | TGGCTGCTTGGTCTCCAAGGTGCTGCCCACCAGGCACCCAAGCCACTTGGAGTCGGCTGTAGGGGATGTTaGTCTCCTGGAAAAAGGTGC | + |
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Preference number: 4 (lower is better) Translates to: WLLGLQGAAHQAPKPLGVGCRGC*SPGKRC Trigger: GCACCTTTTTCCAGGAGACCAACATCCCCTACAGCC...GACTCCAAGTGGCTTGGGTGCCTGGTGGGCAGCACCTTGGAGACCAAGCAGCCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| CDS-3UTR CCA 90 bp | CATAAGACACAGCTGCACGCACACATGCGGAGAAGGCTCTGCATTCCCATGGGTTTGCAAAGCTGCCAGTaGCATGGGGGAAGTGCGGTG | + |
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Preference number: 4 (lower is better) Translates to: HKTQLHAHMRRRLCIPMGLQSCQ*HGGSAV Trigger: CACCGCACTTCCCCCATGCCACTGGCAGCTTTGCAA...ACCCATGGGAATGCAGAGCCTTCTCCGCATGTGTGCGTGCAGCTGTGTCTTATG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| CDS-3UTR GCA 90 bp | CCAAGTGATTCTCTGAAACACTCCAGGTGGTGGGGCCAGGCAGGTAAGTCTTCGTGGGTGTTGCAAAGCTaGCAGTGGCATGGGGGAAGT | + |
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Preference number: 4 (lower is better) Translates to: PSDSLKHSRWWGQAGKSSWVLQS*QWHGGS Trigger: ACTTCCCCCATGCCACTGGCAGCTTTGCAACACCCA...CGAAGACTTACCTGCCTGGCCCCACCACCTGGAGTGTTTCAGAGAATCACTTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| CDS TCA 90 bp | GGGTGTTGCAAAGCTGCCAGTGGCATGGGGGAAGTGCGGTGGGGGTaGTGTGGCCGACGTGGCCATTGGGCTGCTGCTGCCGCCACCCCC | + |
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Preference number: 5 (lower is better) Translates to: GCCKAASGMGEVRWG*CGRRGHWAAAAATP Trigger: GGGGGTGGCGGCAGCAGCAGCCCAATGGCCACGTCGGCCACATCACCCCCACCGCACTTCCCCCATGCCACTGGCAGCTTTGCAACACCC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| CDS CCA 90 bp | GGTGTTGCTGTGGGCCTCCTGGGGGTGAGGCTGCAGTTGGCCAGCTaGGTGTTGCAAAGCTGCCAGTGGCATGGGGGAAGTGCGGTGGGG | + |
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Preference number: 5 (lower is better) Translates to: GVAVGLLGVRLQLAS*VLQSCQWHGGSAVG Trigger: CCCCACCGCACTTCCCCCATGCCACTGGCAGCTTTGCAACACCCAGCTGGCCAACTGCAGCCTCACCCCCAGGAGGCCCACAGCAACACC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| CDS CCA 90 bp | GAGGCTGCAGTTGGCCAGCTGGGTGTTGCAAAGCTGCCAGTGGCATaGGGGAAGTGCGGTGGGGGTGATGTGGCCGACGTGGCCATTGGG | + |
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Preference number: 5 (lower is better) Translates to: EAAVGQLGVAKLPVA*GKCGGGDVADVAIG Trigger: CCCAATGGCCACGTCGGCCACATCACCCCCACCGCACTTCCCCCATGCCACTGGCAGCTTTGCAACACCCAGCTGGCCAACTGCAGCCTC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| CDS CCA 90 bp | GATGTGGCCGACGTGGCCATTGGGCTGCTGCTGCCGCCACCCCCGTaGAAGCTTTCAGAGGCCTTGAGACGGGAGAACATGGTGAGGGCA | + |
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Preference number: 5 (lower is better) Translates to: DVADVAIGLLLPPPP*KLSEALRRENMVRA Trigger: TGCCCTCACCATGTTCTCCCGTCTCAAGGCCTCTGAAAGCTTCCACGGGGGTGGCGGCAGCAGCAGCCCAATGGCCACGTCGGCCACATC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| CDS-3UTR CAA 90 bp | AGTGATTCTCTGAAACACTCCAGGTGGTGGGGCCAGGCAGGTAAGTCTTCGCTGTGGCCGACGTGGCCATaGGGCTGCTGCTGCCGCCAC | + |
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Preference number: 5 (lower is better) Translates to: SDSLKHSRWWGQAGKSSLWPTWP*GCCCRH Trigger: GTGGCGGCAGCAGCAGCCCAATGGCCACGTCGGCCA...CAGCGAAGACTTACCTGCCTGGCCCCACCACCTGGAGTGTTTCAGAGAATCACT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| CDS-3UTR CAA 90 bp | CCAAGTGATTCTCTGAAACACTCCAGGTGGTGGGGCCAGGCAGGTAAGTCTTCGGGCGTGGCAGGGGTGTaGGCGGGAGTGCACATCATC | + |
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Preference number: 5 (lower is better) Translates to: PSDSLKHSRWWGQAGKSSGVAGV*AGVHII Trigger: GATGATGTGCACTCCCGCCAACACCCCTGCCACGCC...CGAAGACTTACCTGCCTGGCCCCACCACCTGGAGTGTTTCAGAGAATCACTTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| CDS-3UTR CAA 90 bp | CATAAGACACAGCTGCACGCACACATGCGGAGAAGGCTCTGCATTCCCATGGGTGGGGTGAGGCTGCAGTaGGCCAGCTGGGTGTTGCAA | + |
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Preference number: 5 (lower is better) Translates to: HKTQLHAHMRRRLCIPMGGVRLQ*ASWVLQ Trigger: TTGCAACACCCAGCTGGCCAACTGCAGCCTCACCCC...ACCCATGGGAATGCAGAGCCTTCTCCGCATGTGTGCGTGCAGCTGTGTCTTATG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| CDS GCA 72 bp | GCGGTGGGGGTGATGTGGCCGACGTGGCCATTGGGCTaGTGCTGCCGCCACCCCCGTGGAAGCTTTCAGAGG | + |
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Preference number: 6 (lower is better) Translates to: AVGVMWPTWPLG*CCRHPRGSFQR Trigger: CCTCTGAAAGCTTCCACGGGGGTGGCGGCAGCAGCAGCCCAATGGCCACGTCGGCCACATCACCCCCACCGC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| CDS CCA 72 bp | TGCCAGTGGCATGGGGGAAGTGCGGTGGGGGTGATGTaGCCGACGTGGCCATTGGGCTGCTGCTGCCGCCAC | + |
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Preference number: 6 (lower is better) Translates to: CQWHGGSAVGVM*PTWPLGCCCRH Trigger: GTGGCGGCAGCAGCAGCCCAATGGCCACGTCGGCCACATCACCCCCACCGCACTTCCCCCATGCCACTGGCA 69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| CDS GCA 72 bp | GTGGGGGTGATGTGGCCGACGTGGCCATTGGGCTGCTaGTGCCGCCACCCCCGTGGAAGCTTTCAGAGGCCT | + |
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Preference number: 6 (lower is better) Translates to: VGVMWPTWPLGC*CRHPRGSFQRP Trigger: AGGCCTCTGAAAGCTTCCACGGGGGTGGCGGCAGCAGCAGCCCAATGGCCACGTCGGCCACATCACCCCCAC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| CDS CAA 72 bp | GGAAGTGCGGTGGGGGTGATGTGGCCGACGTGGCCATaGGGCTGCTGCTGCCGCCACCCCCGTGGAAGCTTT | + |
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Preference number: 6 (lower is better) Translates to: GSAVGVMWPTWP*GCCCRHPRGSF Trigger: AAAGCTTCCACGGGGGTGGCGGCAGCAGCAGCCCAATGGCCACGTCGGCCACATCACCCCCACCGCACTTCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| CDS CAA 90 bp | GCTGCGGCTGGTGTTGCTGTGGGCCTCCTGGGGGTGAGGCTGCAGTaGGCCAGCTGGGTGTTGCAAAGCTGCCAGTGGCATGGGGGAAGT | + |
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Preference number: 6 (lower is better) Translates to: AAAGVAVGLLGVRLQ*ASWVLQSCQWHGGS Trigger: ACTTCCCCCATGCCACTGGCAGCTTTGCAACACCCAGCTGGCCAACTGCAGCCTCACCCCCAGGAGGCCCACAGCAACACCAGCCGCAGC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| CDS CCA 72 bp | GTTGGCCAGCTGGGTGTTGCAAAGCTGCCAGTGGCATaGGGGAAGTGCGGTGGGGGTGATGTGGCCGACGTG | + |
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Preference number: 6 (lower is better) Translates to: VGQLGVAKLPVA*GKCGGGDVADV Trigger: CACGTCGGCCACATCACCCCCACCGCACTTCCCCCATGCCACTGGCAGCTTTGCAACACCCAGCTGGCCAAC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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| CDS CCA 72 bp | CTGCAGTTGGCCAGCTGGGTGTTGCAAAGCTGCCAGTaGCATGGGGGAAGTGCGGTGGGGGTGATGTGGCCG | + |
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Preference number: 6 (lower is better) Translates to: LQLASWVLQSCQ*HGGSAVGVMWP Trigger: CGGCCACATCACCCCCACCGCACTTCCCCCATGCCACTGGCAGCTTTGCAACACCCAGCTGGCCAACTGCAG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000037843.7 |
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