RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for UBA7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032596

Ensembl transcript IDs: ENSMUST00000035216.11, ENSMUST00000177039.8, ENSMUST00000177392.8

Found 280 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGGGATCCAGTGGGCAGGTATATGGAGTCGCTCGTAGGTCTGGGTTaGGACGATGGGCTGCTGCGGCGGCCACCTCTGCCTTGGGCCTTC +
Preference number: 1 (lower is better)
Translates to: WDPVGRYMESLVGLG*DDGLLRRPPLPWAF
Trigger: GAAGGCCCAAGGCAGAGGTGGCCGCCGCAGCAGCCCATCGTCTCAACCCAGACCTACGAGCGACTCCATATACCTGCCCACTGGATCCCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR TCA 90 bp TCAAGGCAGACAGAGGGCAACCTAGTGTGGACAAGAGGGTGCTGGTaGGCCCTCAAGAGCCCCAACCAGGAGCAGGAGCGGCCCAAGGCA +
Preference number: 1 (lower is better)
Translates to: SRQTEGNLVWTRGCW*ALKSPNQEQERPKA
Trigger: TGCCTTGGGCCGCTCCTGCTCCTGGTTGGGGCTCTTGAGGGCTCACCAGCACCCTCTTGTCCACACTAGGTTGCCCTCTGTCTGCCTTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
3UTR TCA 90 bp TCTGGGGCCTGGAATCAGACTCTAGCAGCCGCGTCAGCAGTTCCCTaGGTGCAGGCTGACTTTGTGAGCCAGGCAGCCCATGCATCCGTG +
Preference number: 1 (lower is better)
Translates to: SGAWNQTLAAASAVP*VQADFVSQAAHASV
Trigger: CACGGATGCATGGGCTGCCTGGCTCACAAAGTCAGCCTGCACTCAGGGAACTGCTGACGCGGCTGCTAGAGTCTGATTCCAGGCCCCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR CCA 90 bp AGTGGGCAGGTATATGGAGTCGCTCGTAGGTCTGGGTTGAGACGATaGGCTGCTGCGGCGGCCACCTCTGCCTTGGGCCTTCTAACATCC +
Preference number: 1 (lower is better)
Translates to: SGQVYGVARRSGLRR*AAAAATSALGLLTS
Trigger: GGATGTTAGAAGGCCCAAGGCAGAGGTGGCCGCCGCAGCAGCCCATCGTCTCAACCCAGACCTACGAGCGACTCCATATACCTGCCCACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR CCA 90 bp CGCCCTCACAGCTCAGCTCAAACACCAGAACCTTCAGCCCAGGCTTaGGCTTCCAGCCGGTCACGTGCTGAACCAGTTCTGTCACCCTGG +
Preference number: 1 (lower is better)
Translates to: RPHSSAQTPEPSAQA*ASSRSRAEPVLSPW
Trigger: CCAGGGTGACAGAACTGGTTCAGCACGTGACCGGCTGGAAGCCCAAGCCTGGGCTGAAGGTTCTGGTGTTTGAGCTGAGCTGTGAGGGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
3UTR CCA 90 bp CCTCAAATTGATCCTGGGCCCACTGCACGCTGTGCTCCATCGAGCTaGGGATGTGCCTCAGGGTACACACAGGGTAGGGAGCATCCTCAG +
Preference number: 1 (lower is better)
Translates to: PQIDPGPTARCAPSS*GCASGYTQGREHPQ
Trigger: CTGAGGATGCTCCCTACCCTGTGTGTACCCTGAGGCACATCCCCAGCTCGATGGAGCACAGCGTGCAGTGGGCCCAGGATCAATTTGAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR CCA 90 bp GCTTGGGCTTCCAGCCGGTCACGTGCTGAACCAGTTCTGTCACCCTaGTATGGGAGGGGGTTTAGGGGAGACTCTGTAGGTGGGTCAAGG +
Preference number: 1 (lower is better)
Translates to: AWASSRSRAEPVLSP*YGRGFRGDSVGGSR
Trigger: CCTTGACCCACCTACAGAGTCTCCCCTAAACCCCCTCCCATACCAGGGTGACAGAACTGGTTCAGCACGTGACCGGCTGGAAGCCCAAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
3UTR TCA 90 bp GGTCACGGAACGACTGGACGGCTGGGGCAGAAGGCGCTGAGCGGATaGAGTGGTTTTCAGCCAGGTGCAGATAGCTGTGACGAAAGGTAC +
Preference number: 1 (lower is better)
Translates to: GHGTTGRLGQKALSG*SGFQPGADSCDERY
Trigger: GTACCTTTCGTCACAGCTATCTGCACCTGGCTGAAAACCACTTCATCCGCTCAGCGCCTTCTGCCCCAGCCGTCCAGTCGTTCCGTGACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR TCA 90 bp CCATTTCAGGTCACGGAACGACTGGACGGCTGGGGCAGAAGGCGCTaGGCGGATGAAGTGGTTTTCAGCCAGGTGCAGATAGCTGTGACG +
Preference number: 1 (lower is better)
Translates to: PFQVTERLDGWGRRR*ADEVVFSQVQIAVT
Trigger: CGTCACAGCTATCTGCACCTGGCTGAAAACCACTTCATCCGCTCAGCGCCTTCTGCCCCAGCCGTCCAGTCGTTCCGTGACCTGAAATGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR GCA 90 bp CAGTCTTGCCAGGTCTGTGGGCGAGTTCTCAGGACACCCATCACTTaGTGCAGTAAGGCCAGTGTCTCTGTCCTATCCGTGGCCGACAGG +
Preference number: 1 (lower is better)
Translates to: QSCQVCGRVLRTPIT*CSKASVSVLSVADR
Trigger: CCTGTCGGCCACGGATAGGACAGAGACACTGGCCTTACTGCAGCAAGTGATGGGTGTCCTGAGAACTCGCCCACAGACCTGGCAAGACTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR GCA 90 bp TGGAAGCACAGTTGCCAGTGGCCAAGAGCCCACACCACACAGTCTTaGCAGGTCTGTGGGCGAGTTCTCAGGACACCCATCACTTGCTGC +
Preference number: 1 (lower is better)
Translates to: WKHSCQWPRAHTTQS*QVCGRVLRTPITCC
Trigger: GCAGCAAGTGATGGGTGTCCTGAGAACTCGCCCACAGACCTGGCAAGACTGTGTGGTGTGGGCTCTTGGCCACTGGCAACTGTGCTTCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR CCA 90 bp ACCTTCAGGCGGTCCCAACAGGTCCATTTCAGGTCACGGAACGACTaGACGGCTGGGGCAGAAGGCGCTGAGCGGATGAAGTGGTTTTCA +
Preference number: 1 (lower is better)
Translates to: TFRRSQQVHFRSRND*TAGAEGAERMKWFS
Trigger: TGAAAACCACTTCATCCGCTCAGCGCCTTCTGCCCCAGCCGTCCAGTCGTTCCGTGACCTGAAATGGACCTGTTGGGACCGCCTGAAGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR TCA 90 bp GAATCAGACTCTAGCAGCCGCGTCAGCAGTTCCCTGAGTGCAGGCTaGCTTTGTGAGCCAGGCAGCCCATGCATCCGTGCATACAGGTTG +
Preference number: 1 (lower is better)
Translates to: ESDSSSRVSSSLSAG*LCEPGSPCIRAYRL
Trigger: CAACCTGTATGCACGGATGCATGGGCTGCCTGGCTCACAAAGTCAGCCTGCACTCAGGGAACTGCTGACGCGGCTGCTAGAGTCTGATTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR TCA 90 bp CATCTCCACCTTCAGTCCATGTTCTTCCTGGAGATGGGCCAGCAGTaGCTTCAGTGTCCTTTCAGGCTGCACAGCGGGCACCTTCAGGCG +
Preference number: 1 (lower is better)
Translates to: HLHLQSMFFLEMGQQ*LQCPFRLHSGHLQA
Trigger: CGCCTGAAGGTGCCCGCTGTGCAGCCTGAAAGGACACTGAAGTCACTGCTGGCCCATCTCCAGGAAGAACATGGACTGAAGGTGGAGATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR GCA 90 bp GATGTGCCTCAGGGTACACACAGGGTAGGGAGCATCCTCAGAAGCTaGATCCGAGGCAGGACCTCTGTAGGCTTCTGTCACATAGGGCAC +
Preference number: 1 (lower is better)
Translates to: DVPQGTHRVGSILRS*IRGRTSVGFCHIGH
Trigger: GTGCCCTATGTGACAGAAGCCTACAGAGGTCCTGCCTCGGATGCAGCTTCTGAGGATGCTCCCTACCCTGTGTGTACCCTGAGGCACATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR TCA 90 bp TCAACCTCCAGGGACATGGTAGAGCCTGGCTACGACCGGCTCACCTaGGGCACAGGTGTTGAGCCTGCTTTTCAGATGACCATCCTGAAG +
Preference number: 1 (lower is better)
Translates to: STSRDMVEPGYDRLT*GTGVEPAFQMTILK
Trigger: CTTCAGGATGGTCATCTGAAAAGCAGGCTCAACACCTGTGCCTCAGGTGAGCCGGTCGTAGCCAGGCTCTACCATGTCCCTGGAGGTTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
3UTR CCA 90 bp GCTGACTTTGTGAGCCAGGCAGCCCATGCATCCGTGCATACAGGTTaGCAGCTGCCAGTACGTAGAGGAAATGCATGTCGTGGTTGGGGT +
Preference number: 1 (lower is better)
Translates to: ADFVSQAAHASVHTG*QLPVRRGNACRGWG
Trigger: ACCCCAACCACGACATGCATTTCCTCTACGTACTGGCAGCTGCCAACCTGTATGCACGGATGCATGGGCTGCCTGGCTCACAAAGTCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR CCA 90 bp TGGTGGAGAAGCATCTCCACCTTCAGTCCATGTTCTTCCTGGAGATaGGCCAGCAGTGACTTCAGTGTCCTTTCAGGCTGCACAGCGGGC +
Preference number: 1 (lower is better)
Translates to: WWRSISTFSPCSSWR*ASSDFSVLSGCTAG
Trigger: GCCCGCTGTGCAGCCTGAAAGGACACTGAAGTCACTGCTGGCCCATCTCCAGGAAGAACATGGACTGAAGGTGGAGATGCTTCTCCACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR CCA 90 bp TGGTGGCGTGGTGTGGCTACCTCGTCACAGCTCATAATGCAGAGGTaGGAAGGCCATTTCTTCCTCCTCGCCCTCACAGCTCAGCTCAAA +
Preference number: 1 (lower is better)
Translates to: WWRGVATSSQLIMQR*EGHFFLLALTAQLK
Trigger: TTTGAGCTGAGCTGTGAGGGCGAGGAGGAAGAAATGGCCTTCCCACCTCTGCATTATGAGCTGTGACGAGGTAGCCACACCACGCCACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR GCA 90 bp CAGTCGTCCAGGGTTTCCTGCAGTTCCTTCAACTGTTCCTGGCCATaGTCAGCAGAGAAGAGGTTCTGGGGCCTGGAATCAGACTCTAGC +
Preference number: 1 (lower is better)
Translates to: QSSRVSCSSFNCSWP*SAEKRFWGLESDSS
Trigger: GCTAGAGTCTGATTCCAGGCCCCAGAACCTCTTCTCTGCTGAGCATGGCCAGGAACAGTTGAAGGAACTGCAGGAAACCCTGGACGACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR CCA 90 bp TTCCTCCAGTCGTCCAGGGTTTCCTGCAGTTCCTTCAACTGTTCCTaGCCATGCTCAGCAGAGAAGAGGTTCTGGGGCCTGGAATCAGAC +
Preference number: 1 (lower is better)
Translates to: FLQSSRVSCSSFNCS*PCSAEKRFWGLESD
Trigger: GTCTGATTCCAGGCCCCAGAACCTCTTCTCTGCTGAGCATGGCCAGGAACAGTTGAAGGAACTGCAGGAAACCCTGGACGACTGGAGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR CCA 90 bp GCCGGGCCTGGAAGCTGTCCAAAGCAGCAACAACACCGTTCACCCTaGAGAAAAAGCTGTCATCGTAGATATCCTCTGTGGTGGGATCCA +
Preference number: 1 (lower is better)
Translates to: AGPGSCPKQQQHRSP*RKSCHRRYPLWWDP
Trigger: TGGATCCCACCACAGAGGATATCTACGATGACAGCTTTTTCTCCAGGGTGAACGGTGTTGTTGCTGCTTTGGACAGCTTCCAGGCCCGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR CCA 90 bp TCTTGGCTGACAATCCTCAGGGCTGGGAAGGAGCGTCTCATCTTCTaGAAGACATTCAAGGGCGTCAAAGTACAGCCACTGATCCAGGGG +
Preference number: 1 (lower is better)
Translates to: SWLTILRAGKERLIF*KTFKGVKVQPLIQG
Trigger: CCCCTGGATCAGTGGCTGTACTTTGACGCCCTTGAATGTCTTCCAGAAGATGAGACGCTCCTTCCCAGCCCTGAGGATTGTCAGCCAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR TCA 90 bp TGTCTTTTGGTGTCTCCTCTCAGGGTGACAATGCCGGGGAAACCCTaGGAGATGTCCTGGATGGCAGCTGTCATGGGTTCTACCTCAGTA +
Preference number: 1 (lower is better)
Translates to: CLLVSPLRVTMPGKP*EMSWMAAVMGSTSV
Trigger: TACTGAGGTAGAACCCATGACAGCTGCCATCCAGGACATCTCTCAGGGTTTCCCCGGCATTGTCACCCTGAGAGGAGACACCAAAAGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR GCA 90 bp TGGCTGCCATGGGGCTTAAGGTACCAGCACTACTCAGGGCAATTGTaGGGAGGAGAGCCTCATCCAGTGACTCTTCTTCTGTCCCTTTTA +
Preference number: 1 (lower is better)
Translates to: WLPWGLRYQHYSGQL*GGEPHPVTLLLSLL
Trigger: TAAAAGGGACAGAAGAAGAGTCACTGGATGAGGCTCTCCTCCGCACAATTGCCCTGAGTAGTGCTGGTACCTTAAGCCCCATGGCAGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR CCA 90 bp CGTTCACCCTGGAGAAAAAGCTGTCATCGTAGATATCCTCTGTGGTaGGATCCAGTGGGCAGGTATATGGAGTCGCTCGTAGGTCTGGGT +
Preference number: 1 (lower is better)
Translates to: RSPWRKSCHRRYPLW*DPVGRYMESLVGLG
Trigger: ACCCAGACCTACGAGCGACTCCATATACCTGCCCACTGGATCCCACCACAGAGGATATCTACGATGACAGCTTTTTCTCCAGGGTGAACG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR CCA 90 bp CACCGTTCACCCTGGAGAAAAAGCTGTCATCGTAGATATCCTCTGTaGTGGGATCCAGTGGGCAGGTATATGGAGTCGCTCGTAGGTCTG +
Preference number: 1 (lower is better)
Translates to: HRSPWRKSCHRRYPL*WDPVGRYMESLVGL
Trigger: CAGACCTACGAGCGACTCCATATACCTGCCCACTGGATCCCACCACAGAGGATATCTACGATGACAGCTTTTTCTCCAGGGTGAACGGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR CCA 90 bp ACAGGTTGGCAGCTGCCAGTACGTAGAGGAAATGCATGTCGTGGTTaGGGTCAAACTGCAAGGGATGTGGACACTTGTTGGATCCTGATG +
Preference number: 1 (lower is better)
Translates to: TGWQLPVRRGNACRG*GQTARDVDTCWILM
Trigger: CATCAGGATCCAACAAGTGTCCACATCCCTTGCAGTTTGACCCCAACCACGACATGCATTTCCTCTACGTACTGGCAGCTGCCAACCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR CCA 90 bp TTTGCCCATCGTATCGGCAGTTTCTTGGCTGACAATCCTCAGGGCTaGGAAGGAGCGTCTCATCTTCTGGAAGACATTCAAGGGCGTCAA +
Preference number: 1 (lower is better)
Translates to: FAHRIGSFLADNPQG*EGASHLLEDIQGRQ
Trigger: TTGACGCCCTTGAATGTCTTCCAGAAGATGAGACGCTCCTTCCCAGCCCTGAGGATTGTCAGCCAAGAAACTGCCGATACGATGGGCAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR GCA 90 bp CGGGAGAAAGTTGTCGTATCTCCAATCTCCAAGGACCCGTCTTTCTaGACACGGACAGACTGTGGAGAACAACTGTTGAGTTCAACCATG +
Preference number: 1 (lower is better)
Translates to: REKVVVSPISKDPSF*TRTDCGEQLLSSTM
Trigger: CATGGTTGAACTCAACAGTTGTTCTCCACAGTCTGTCCGTGTGCAGAAAGACGGGTCCTTGGAGATTGGAGATACGACAACTTTCTCCCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR TCA 90 bp AGGACCCGTCTTTCTGCACACGGACAGACTGTGGAGAACAACTGTTaGGTTCAACCATGCCTTCAATGTCTGAGAAAATCACCAAGTCCC +
Preference number: 1 (lower is better)
Translates to: RTRLSAHGQTVENNC*VQPCLQCLRKSPSP
Trigger: GGGACTTGGTGATTTTCTCAGACATTGAAGGCATGGTTGAACTCAACAGTTGTTCTCCACAGTCTGTCCGTGTGCAGAAAGACGGGTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR TCA 90 bp TCAAACTGCAAGGGATGTGGACACTTGTTGGATCCTGATGAGAACTaGGTTCCACCCTCAAGCACTTTATCATGGAAGCACAGTTGCCAG +
Preference number: 1 (lower is better)
Translates to: SNCKGCGHLLDPDEN*VPPSSTLSWKHSCQ
Trigger: CTGGCAACTGTGCTTCCATGATAAAGTGCTTGAGGGTGGAACTCAGTTCTCATCAGGATCCAACAAGTGTCCACATCCCTTGCAGTTTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR TCA 90 bp GCCTTCCGTCAACAAGTTTTTATTGTTGAAGTATCTGCTGTGAGCTaGAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGT +
Preference number: 1 (lower is better)
Translates to: AFRQQVFIVEVSAVS*RCRNFMQSLLWPSG
Trigger: ACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGCTCACAGCAGATACTTCAACAATAAAAACTTGTTGACGGAAGGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035216.11
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR GCA 90 bp CACCTTCAGGCGGTCCCAACAGGTCCATTTCAGGTCACGGAACGACTGGACGGCAAGCACTCCCCCAGGTaGCCTGGGTGCCGGCCTCCA +
Preference number: 2 (lower is better)
Translates to: HLQAVPTGPFQVTERLDGKHSPR*PGCRPP
Trigger: TGGAGGCCGGCACCCAGGGCACCTGGGGGAGTGCTT...GCCGTCCAGTCGTTCCGTGACCTGAAATGGACCTGTTGGGACCGCCTGAAGGTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR CAA 90 bp GTGGGATCCAGTGGGCAGGTATATGGAGTCGCTCGTAGGTCTGGGTaGAGACGATGGGCTGCTGCGGCGGCCACCTCTGCCTTGGGCCTT +
Preference number: 2 (lower is better)
Translates to: VGSSGQVYGVARRSG*RRWAAAAATSALGL
Trigger: AAGGCCCAAGGCAGAGGTGGCCGCCGCAGCAGCCCATCGTCTCAACCCAGACCTACGAGCGACTCCATATACCTGCCCACTGGATCCCAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR GCA 90 bp ACAGCTCAGCTCAAACACCAGAACCTTCAGCCCAGGCTTGGGCTTCCAGCCGGTGTTGAGACGATGGGCTaGTGCGGCGGCCACCTCTGC +
Preference number: 2 (lower is better)
Translates to: TAQLKHQNLQPRLGLPAGVETMG*CGGHLC
Trigger: GCAGAGGTGGCCGCCGCAGCAGCCCATCGTCTCAAC...ACCGGCTGGAAGCCCAAGCCTGGGCTGAAGGTTCTGGTGTTTGAGCTGAGCTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR TCA 90 bp GGAGCCCGCTTACCACCTTATACAGCTCCAGGCCCAGTAAGCCTGCCACAACTGTCCCTGAGTGCAGGCTaGCTTTGTGAGCCAGGCAGC +
Preference number: 2 (lower is better)
Translates to: GARLPPYTAPGPVSLPQLSLSAG*LCEPGS
Trigger: GCTGCCTGGCTCACAAAGTCAGCCTGCACTCAGGGA...CAGTTGTGGCAGGCTTACTGGGCCTGGAGCTGTATAAGGTGGTAAGCGGGCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR TCA 90 bp CGGGCACCTTCAGGCGGTCCCAACAGGTCCATTTCAGGTCACGGAACGACTGGATGGGGCAGAAGGCGCTaGGCGGATGAAGTGGTTTTC +
Preference number: 2 (lower is better)
Translates to: RAPSGGPNRSISGHGTTGWGRRR*ADEVVF
Trigger: GAAAACCACTTCATCCGCTCAGCGCCTTCTGCCCCA...TCCAGTCGTTCCGTGACCTGAAATGGACCTGTTGGGACCGCCTGAAGGTGCCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR TCA 90 bp ACAGCTCAGCTCAAACACCAGAACCTTCAGCCCAGGCTTGGGCTTCCAGCCGGTACAAGAGGGTGCTGGTaGGCCCTCAAGAGCCCCAAC +
Preference number: 2 (lower is better)
Translates to: TAQLKHQNLQPRLGLPAGTRGCW*ALKSPN
Trigger: GTTGGGGCTCTTGAGGGCTCACCAGCACCCTCTTGT...ACCGGCTGGAAGCCCAAGCCTGGGCTGAAGGTTCTGGTGTTTGAGCTGAGCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
3UTR-3UTR TCA 90 bp CAGTGGCCAAGAGCCCACACCACACAGTCTTGCCAGGTCTGTGGGCGAGTTCTCGCCTTTAGGACCTCCTaGGCAGCCACTCCTCCCATA +
Preference number: 2 (lower is better)
Translates to: QWPRAHTTQSCQVCGRVLAFRTS*AATPPI
Trigger: TATGGGAGGAGTGGCTGCTCAGGAGGTCCTAAAGGC...GAGAACTCGCCCACAGACCTGGCAAGACTGTGTGGTGTGGGCTCTTGGCCACTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR-3UTR GCA 90 bp AGACGATGGGCTGCTGCGGCGGCCACCTCTGCCTTGGGCCTTCTAACATCCTTGAGCATCCTCAGAAGCTaGATCCGAGGCAGGACCTCT +
Preference number: 2 (lower is better)
Translates to: RRWAAAAATSALGLLTSLSILRS*IRGRTS
Trigger: AGAGGTCCTGCCTCGGATGCAGCTTCTGAGGATGCT...CAAGGATGTTAGAAGGCCCAAGGCAGAGGTGGCCGCCGCAGCAGCCCATCGTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CCA 90 bp AGACGATGGGCTGCTGCGGCGGCCACCTCTGCCTTGGGCCTTCTAACATCCTTGGCATCTCACAGCCAATaGCACCAGCACCCACCAAGA +
Preference number: 2 (lower is better)
Translates to: RRWAAAAATSALGLLTSLASHSQ*HQHPPR
Trigger: TCTTGGTGGGTGCTGGTGCCATTGGCTGTGAGATGC...CAAGGATGTTAGAAGGCCCAAGGCAGAGGTGGCCGCCGCAGCAGCCCATCGTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR TCA 90 bp CAGTGGCCAAGAGCCCACACCACACAGTCTTGCCAGGTCTGTGGGCGAGTTCTCTTGGGTAGCCGGCCATaGAGTTGCTGGAACTTGTGC +
Preference number: 2 (lower is better)
Translates to: QWPRAHTTQSCQVCGRVLLGSRP*SCWNLC
Trigger: GCACAAGTTCCAGCAACTTCATGGCCGGCTACCCAA...GAGAACTCGCCCACAGACCTGGCAAGACTGTGTGGTGTGGGCTCTTGGCCACTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR-3UTR GCA 90 bp GGCCACCTCTGCCTTGGGCCTTCTAACATCCTTGGGCCTGAAGAGGAACTGCCTATCGAGCTGGGGATGTaGCTCAGGGTACACACAGGG +
Preference number: 2 (lower is better)
Translates to: GHLCLGPSNILGPEEELPIELGM*LRVHTG
Trigger: CCCTGTGTGTACCCTGAGGCACATCCCCAGCTCGAT...AGGCAGTTCCTCTTCAGGCCCAAGGATGTTAGAAGGCCCAAGGCAGAGGTGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR GCA 90 bp AGACGATGGGCTGCTGCGGCGGCCACCTCTGCCTTGGGCCTTCTAACATCCTTGTGGCCGACAGGGAAGTaGATGTCTGTTGGTAGCAGT +
Preference number: 2 (lower is better)
Translates to: RRWAAAAATSALGLLTSLWPTGK*MSVGSS
Trigger: ACTGCTACCAACAGACATGCACTTCCCTGTCGGCCA...CAAGGATGTTAGAAGGCCCAAGGCAGAGGTGGCCGCCGCAGCAGCCCATCGTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CCA 90 bp CTCCATCGAGCTGGGGATGTGCCTCAGGGTACACACAGGGTAGGGAGCATCCTCGCATCTCACAGCCAATaGCACCAGCACCCACCAAGA +
Preference number: 2 (lower is better)
Translates to: LHRAGDVPQGTHRVGSILASHSQ*HQHPPR
Trigger: TCTTGGTGGGTGCTGGTGCCATTGGCTGTGAGATGC...GAGGATGCTCCCTACCCTGTGTGTACCCTGAGGCACATCCCCAGCTCGATGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CCA 90 bp TGCCAGTGGCCAAGAGCCCACACCACACAGTCTTGCCAGGTCTGTGGGCGAGTTTGTGGTGGGATCCAGTaGGCAGGTATATGGAGTCGC +
Preference number: 2 (lower is better)
Translates to: CQWPRAHTTQSCQVCGRVCGGIQ*AGIWSR
Trigger: GCGACTCCATATACCTGCCCACTGGATCCCACCACA...AACTCGCCCACAGACCTGGCAAGACTGTGTGGTGTGGGCTCTTGGCCACTGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CCA 90 bp GTGCTCCATCGAGCTGGGGATGTGCCTCAGGGTACACACAGGGTAGGGAGCATCCGTAGATATCCTCTGTaGTGGGATCCAGTGGGCAGG +
Preference number: 2 (lower is better)
Translates to: VLHRAGDVPQGTHRVGSIRRYPL*WDPVGR
Trigger: CCTGCCCACTGGATCCCACCACAGAGGATATCTACG...GATGCTCCCTACCCTGTGTGTACCCTGAGGCACATCCCCAGCTCGATGGAGCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR CAA 90 bp ATGGAAGCACAGTTGCCAGTGGCCAAGAGCCCACACCACACAGTCTaGCCAGGTCTGTGGGCGAGTTCTCAGGACACCCATCACTTGCTG +
Preference number: 2 (lower is better)
Translates to: MEAQLPVAKSPHHTV*PGLWASSQDTHHLL
Trigger: CAGCAAGTGATGGGTGTCCTGAGAACTCGCCCACAGACCTGGCAAGACTGTGTGGTGTGGGCTCTTGGCCACTGGCAACTGTGCTTCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR TCA 90 bp GCTCATAATGCAGAGGTGGGAAGGCCATTTCTTCCTCCTCGCCCTCACAGCTCATCCCTGAGTGCAGGCTaGCTTTGTGAGCCAGGCAGC +
Preference number: 2 (lower is better)
Translates to: AHNAEVGRPFLPPRPHSSSLSAG*LCEPGS
Trigger: GCTGCCTGGCTCACAAAGTCAGCCTGCACTCAGGGA...TGAGCTGTGAGGGCGAGGAGGAAGAAATGGCCTTCCCACCTCTGCATTATGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR TCA 90 bp ACAGCTCAGCTCAAACACCAGAACCTTCAGCCCAGGCTTGGGCTTCCAGCCGGTAAGGCGCTGAGCGGATaGAGTGGTTTTCAGCCAGGT +
Preference number: 2 (lower is better)
Translates to: TAQLKHQNLQPRLGLPAGKALSG*SGFQPG
Trigger: ACCTGGCTGAAAACCACTTCATCCGCTCAGCGCCTT...ACCGGCTGGAAGCCCAAGCCTGGGCTGAAGGTTCTGGTGTTTGAGCTGAGCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR GCA 90 bp TCCAGTGACTCTTCTTCTGTCCCTTTTAGTGGCTCCAGGTCCTGGGCCAGCTCCGGCCTGAAGAGGAACTaGCTGCTGAGGTTGGAGCGT +
Preference number: 2 (lower is better)
Translates to: SSDSSSVPFSGSRSWASSGLKRN*LLRLER
Trigger: ACGCTCCAACCTCAGCAGGCAGTTCCTCTTCAGGCC...GGAGCTGGCCCAGGACCTGGAGCCACTAAAAGGGACAGAAGAAGAGTCACTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR-3UTR GCA 90 bp TCATGGAAGCACAGTTGCCAGTGGCCAAGAGCCCACACCACACAGTCTTGCCAGGGCCTGAAGAGGAACTaGCTGCTGAGGTTGGAGCGT +
Preference number: 2 (lower is better)
Translates to: SWKHSCQWPRAHTTQSCQGLKRN*LLRLER
Trigger: ACGCTCCAACCTCAGCAGGCAGTTCCTCTTCAGGCC...CTGGCAAGACTGTGTGGTGTGGGCTCTTGGCCACTGGCAACTGTGCTTCCATGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR GCA 90 bp GGAGCCCGCTTACCACCTTATACAGCTCCAGGCCCAGTAAGCCTGCCACAACTGAGCATCCTCAGAAGCTaGATCCGAGGCAGGACCTCT +
Preference number: 2 (lower is better)
Translates to: GARLPPYTAPGPVSLPQLSILRS*IRGRTS
Trigger: AGAGGTCCTGCCTCGGATGCAGCTTCTGAGGATGCT...CAGTTGTGGCAGGCTTACTGGGCCTGGAGCTGTATAAGGTGGTAAGCGGGCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR GCA 90 bp GCTGACTTTGTGAGCCAGGCAGCCCATGCATCCGTGCATACAGGTTGGCAGCTGTCATGGAAGCACAGTTaGCAGTGGCCAAGAGCCCAC +
Preference number: 2 (lower is better)
Translates to: ADFVSQAAHASVHTGWQLSWKHS*QWPRAH
Trigger: GTGGGCTCTTGGCCACTGGCAACTGTGCTTCCATGA...CAGCTGCCAACCTGTATGCACGGATGCATGGGCTGCCTGGCTCACAAAGTCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CCA 90 bp GCTCATAATGCAGAGGTGGGAAGGCCATTTCTTCCTCCTCGCCCTCACAGCTCAGCCGGCCTCCAGCAGTaGCTTCAGATAGTGGGTGCA +
Preference number: 2 (lower is better)
Translates to: AHNAEVGRPFLPPRPHSSAGLQQ*LQIVGA
Trigger: TGCACCCACTATCTGAAGCCACTGCTGGAGGCCGGC...TGAGCTGTGAGGGCGAGGAGGAAGAAATGGCCTTCCCACCTCTGCATTATGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CCA 90 bp AGACGATGGGCTGCTGCGGCGGCCACCTCTGCCTTGGGCCTTCTAACATCCTTGGAGCGTCTCATCTTCTaGAAGACATTCAAGGGCGTC +
Preference number: 2 (lower is better)
Translates to: RRWAAAAATSALGLLTSLERLIF*KTFKGV
Trigger: GACGCCCTTGAATGTCTTCCAGAAGATGAGACGCTC...CAAGGATGTTAGAAGGCCCAAGGCAGAGGTGGCCGCCGCAGCAGCCCATCGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR-3UTR TCA 90 bp TCATGGAAGCACAGTTGCCAGTGGCCAAGAGCCCACACCACACAGTCTTGCCAGAAGAGTCCCTCAAATTaGTCCTGGGCCCACTGCACG +
Preference number: 2 (lower is better)
Translates to: SWKHSCQWPRAHTTQSCQKSPSN*SWAHCT
Trigger: CGTGCAGTGGGCCCAGGATCAATTTGAGGGACTCTT...CTGGCAAGACTGTGTGGTGTGGGCTCTTGGCCACTGGCAACTGTGCTTCCATGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR TCA 90 bp AGTTCCTTCAACTGTTCCTGGCCATGCTCAGCAGAGAAGAGGTTCTGGGGCCTGATGCCGGGGAAACCCTaGGAGATGTCCTGGATGGCA +
Preference number: 2 (lower is better)
Translates to: SSFNCSWPCSAEKRFWGLMPGKP*EMSWMA
Trigger: TGCCATCCAGGACATCTCTCAGGGTTTCCCCGGCAT...CAGGCCCCAGAACCTCTTCTCTGCTGAGCATGGCCAGGAACAGTTGAAGGAACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR-3UTR TCA 90 bp GCTCATAATGCAGAGGTGGGAAGGCCATTTCTTCCTCCTCGCCCTCACAGCTCATGTCTCCTCTCAGGGTaGCAATGCCGGGGAAACCCT +
Preference number: 2 (lower is better)
Translates to: AHNAEVGRPFLPPRPHSSCLLSG*QCRGNP
Trigger: AGGGTTTCCCCGGCATTGTCACCCTGAGAGGAGACA...TGAGCTGTGAGGGCGAGGAGGAAGAAATGGCCTTCCCACCTCTGCATTATGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR-3UTR GCA 90 bp TGCCAGTGGCCAAGAGCCCACACCACACAGTCTTGCCAGGTCTGTGGGCGAGTTGCTTCAGATAGTGGGTaGATCGAGCAGCGACATAGT +
Preference number: 2 (lower is better)
Translates to: CQWPRAHTTQSCQVCGRVASDSG*IEQRHS
Trigger: ACTATGTCGCTGCTCGATGCACCCACTATCTGAAGC...AACTCGCCCACAGACCTGGCAAGACTGTGTGGTGTGGGCTCTTGGCCACTGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CCA 90 bp CGGGCACCTTCAGGCGGTCCCAACAGGTCCATTTCAGGTCACGGAACGACTGGAAGATATCCTCTGTGGTaGGATCCAGTGGGCAGGTAT +
Preference number: 2 (lower is better)
Translates to: RAPSGGPNRSISGHGTTGRYPLW*DPVGRY
Trigger: ATACCTGCCCACTGGATCCCACCACAGAGGATATCT...TCCAGTCGTTCCGTGACCTGAAATGGACCTGTTGGGACCGCCTGAAGGTGCCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CCA 90 bp CTCAAGCACTTTATCATGGAAGCACAGTTGCCAGTGGCCAAGAGCCCACACCACGCCGGCCTCCAGCAGTaGCTTCAGATAGTGGGTGCA +
Preference number: 2 (lower is better)
Translates to: LKHFIMEAQLPVAKSPHHAGLQQ*LQIVGA
Trigger: TGCACCCACTATCTGAAGCCACTGCTGGAGGCCGGC...GTGGTGTGGGCTCTTGGCCACTGGCAACTGTGCTTCCATGATAAAGTGCTTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CCA 90 bp GGCCACCTCTGCCTTGGGCCTTCTAACATCCTTGGGCCTGAAGAGGAACTGCCTTCCGTGCATACAGGTTaGCAGCTGCCAGTACGTAGA +
Preference number: 2 (lower is better)
Translates to: GHLCLGPSNILGPEEELPSVHTG*QLPVRR
Trigger: TCTACGTACTGGCAGCTGCCAACCTGTATGCACGGA...AGGCAGTTCCTCTTCAGGCCCAAGGATGTTAGAAGGCCCAAGGCAGAGGTGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CCA 90 bp ACGAAAGGTACCATGGGATCGGAGCCCGCTTACCACCTTATACAGCTCCAGGCCAGAGGTTCTGGGGCCTaGAATCAGACTCTAGCAGCC +
Preference number: 2 (lower is better)
Translates to: TKGTMGSEPAYHLIQLQARGSGA*NQTLAA
Trigger: GGCTGCTAGAGTCTGATTCCAGGCCCCAGAACCTCT...GGCCTGGAGCTGTATAAGGTGGTAAGCGGGCTCCGATCCCATGGTACCTTTCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR GCA 90 bp GCTACCTCGTCACAGCTCATAATGCAGAGGTGGGAAGGCCATTTCTTCCTCCTCCAGCCCATGCATCCGTaGATACAGGTTGGCAGCTGC +
Preference number: 2 (lower is better)
Translates to: ATSSQLIMQRWEGHFFLLQPMHP*IQVGSC
Trigger: GCAGCTGCCAACCTGTATGCACGGATGCATGGGCTG...GAGGAGGAAGAAATGGCCTTCCCACCTCTGCATTATGAGCTGTGACGAGGTAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR GCA 90 bp AAGCTGCATCCGAGGCAGGACCTCTGTAGGCTTCTGTCACATAGGGCACAAACACAGCCCATGCATCCGTaGATACAGGTTGGCAGCTGC +
Preference number: 2 (lower is better)
Translates to: KLHPRQDLCRLLSHRAQTQPMHP*IQVGSC
Trigger: GCAGCTGCCAACCTGTATGCACGGATGCATGGGCTG...TGTTTGTGCCCTATGTGACAGAAGCCTACAGAGGTCCTGCCTCGGATGCAGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CCA 90 bp AGTCGTCCAGGGTTTCCTGCAGTTCCTTCAACTGTTCCTGGCCATGCTCAGCAGAAGCACAGTTGCCAGTaGCCAAGAGCCCACACCACA +
Preference number: 2 (lower is better)
Translates to: SRPGFPAVPSTVPGHAQQKHSCQ*PRAHTT
Trigger: TGTGGTGTGGGCTCTTGGCCACTGGCAACTGTGCTT...CTGCTGAGCATGGCCAGGAACAGTTGAAGGAACTGCAGGAAACCCTGGACGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CCA 90 bp CTCCATCGAGCTGGGGATGTGCCTCAGGGTACACACAGGGTAGGGAGCATCCTCAGGAAATGCATGTCGTaGTTGGGGTCAAACTGCAAG +
Preference number: 2 (lower is better)
Translates to: LHRAGDVPQGTHRVGSILRKCMS*LGSNCK
Trigger: CTTGCAGTTTGACCCCAACCACGACATGCATTTCCT...GAGGATGCTCCCTACCCTGTGTGTACCCTGAGGCACATCCCCAGCTCGATGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR TCA 90 bp GCTACCTCGTCACAGCTCATAATGCAGAGGTGGGAAGGCCATTTCTTCCTCCTCAAGAGTCCCTCAAATTaGTCCTGGGCCCACTGCACG +
Preference number: 2 (lower is better)
Translates to: ATSSQLIMQRWEGHFFLLKSPSN*SWAHCT
Trigger: CGTGCAGTGGGCCCAGGATCAATTTGAGGGACTCTT...GAGGAGGAAGAAATGGCCTTCCCACCTCTGCATTATGAGCTGTGACGAGGTAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR TCA 90 bp ACGAAAGGTACCATGGGATCGGAGCCCGCTTACCACCTTATACAGCTCCAGGCCGAGAGCCTCATCCAGTaGCTCTTCTTCTGTCCCTTT +
Preference number: 2 (lower is better)
Translates to: TKGTMGSEPAYHLIQLQAESLIQ*LFFCPF
Trigger: AAAGGGACAGAAGAAGAGTCACTGGATGAGGCTCTC...GGCCTGGAGCTGTATAAGGTGGTAAGCGGGCTCCGATCCCATGGTACCTTTCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR-3UTR GCA 90 bp GCTCATAATGCAGAGGTGGGAAGGCCATTTCTTCCTCCTCGCCCTCACAGCTCATGGCCGACAGGGAAGTaGATGTCTGTTGGTAGCAGT +
Preference number: 2 (lower is better)
Translates to: AHNAEVGRPFLPPRPHSSWPTGK*MSVGSS
Trigger: ACTGCTACCAACAGACATGCACTTCCCTGTCGGCCA...TGAGCTGTGAGGGCGAGGAGGAAGAAATGGCCTTCCCACCTCTGCATTATGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR GCA 90 bp ACGAAAGGTACCATGGGATCGGAGCCCGCTTACCACCTTATACAGCTCCAGGCCAACTGTTCCTGGCCATaGTCAGCAGAGAAGAGGTTC +
Preference number: 2 (lower is better)
Translates to: TKGTMGSEPAYHLIQLQANCSWP*SAEKRF
Trigger: GAACCTCTTCTCTGCTGAGCATGGCCAGGAACAGTT...GGCCTGGAGCTGTATAAGGTGGTAAGCGGGCTCCGATCCCATGGTACCTTTCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CCA 90 bp CTCAAGCACTTTATCATGGAAGCACAGTTGCCAGTGGCCAAGAGCCCACACCACAGAGGTTCTGGGGCCTaGAATCAGACTCTAGCAGCC +
Preference number: 2 (lower is better)
Translates to: LKHFIMEAQLPVAKSPHHRGSGA*NQTLAA
Trigger: GGCTGCTAGAGTCTGATTCCAGGCCCCAGAACCTCT...GTGGTGTGGGCTCTTGGCCACTGGCAACTGTGCTTCCATGATAAAGTGCTTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CCA 90 bp GCCTGGTGGTGGAGAAGCATCTCCACCTTCAGTCCATGTTCTTCCTGGAGATGGGCTGAGCGGATGAAGTaGTTTTCAGCCAGGTGCAGA +
Preference number: 2 (lower is better)
Translates to: AWWWRSISTFSPCSSWRWAERMK*FSARCR
Trigger: TCTGCACCTGGCTGAAAACCACTTCATCCGCTCAGC...CCATCTCCAGGAAGAACATGGACTGAAGGTGGAGATGCTTCTCCACCACCAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CCA 90 bp AGTCGTCCAGGGTTTCCTGCAGTTCCTTCAACTGTTCCTGGCCATGCTCAGCAGGACAATCCTCAGGGCTaGGAAGGAGCGTCTCATCTT +
Preference number: 2 (lower is better)
Translates to: SRPGFPAVPSTVPGHAQQDNPQG*EGASHL
Trigger: AAGATGAGACGCTCCTTCCCAGCCCTGAGGATTGTC...CTGCTGAGCATGGCCAGGAACAGTTGAAGGAACTGCAGGAAACCCTGGACGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR-3UTR CCA 90 bp CACACCACACAGTCTTGCCAGGTCTGTGGGCGAGTTCTCAGGACACCCATCACTGTATCGGCAGTTTCTTaGCTGACAATCCTCAGGGCT +
Preference number: 2 (lower is better)
Translates to: HTTQSCQVCGRVLRTPITVSAVS*LTILRA
Trigger: AGCCCTGAGGATTGTCAGCCAAGAAACTGCCGATAC...AGTGATGGGTGTCCTGAGAACTCGCCCACAGACCTGGCAAGACTGTGTGGTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR-3UTR TCA 90 bp ACGAAAGGTACCATGGGATCGGAGCCCGCTTACCACCTTATACAGCTCCAGGCCCATGCCTTCAATGTCTaGGAAAATCACCAAGTCCCC +
Preference number: 2 (lower is better)
Translates to: TKGTMGSEPAYHLIQLQAHAFNV*ENHQVP
Trigger: GGGGACTTGGTGATTTTCTCAGACATTGAAGGCATG...GGCCTGGAGCTGTATAAGGTGGTAAGCGGGCTCCGATCCCATGGTACCTTTCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR-3UTR CCA 90 bp GCTGACTTTGTGAGCCAGGCAGCCCATGCATCCGTGCATACAGGTTGGCAGCTGTCAAGCACTTTATCATaGAAGCACAGTTGCCAGTGG +
Preference number: 2 (lower is better)
Translates to: ADFVSQAAHASVHTGWQLSSTLS*KHSCQW
Trigger: CCACTGGCAACTGTGCTTCCATGATAAAGTGCTTGA...CAGCTGCCAACCTGTATGCACGGATGCATGGGCTGCCTGGCTCACAAAGTCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CCA 90 bp CACACCACACAGTCTTGCCAGGTCTGTGGGCGAGTTCTCAGGACACCCATCACTAGGAAATGCATGTCGTaGTTGGGGTCAAACTGCAAG +
Preference number: 2 (lower is better)
Translates to: HTTQSCQVCGRVLRTPITRKCMS*LGSNCK
Trigger: CTTGCAGTTTGACCCCAACCACGACATGCATTTCCT...AGTGATGGGTGTCCTGAGAACTCGCCCACAGACCTGGCAAGACTGTGTGGTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CCA 90 bp GCTCATAATGCAGAGGTGGGAAGGCCATTTCTTCCTCCTCGCCCTCACAGCTCATGTTCTTCCTGGAGATaGGCCAGCAGTGACTTCAGT +
Preference number: 2 (lower is better)
Translates to: AHNAEVGRPFLPPRPHSSCSSWR*ASSDFS
Trigger: ACTGAAGTCACTGCTGGCCCATCTCCAGGAAGAACA...TGAGCTGTGAGGGCGAGGAGGAAGAAATGGCCTTCCCACCTCTGCATTATGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR TCA 90 bp GCTACCTCGTCACAGCTCATAATGCAGAGGTGGGAAGGCCATTTCTTCCTCCTCGATCCTGATGAGAACTaGGTTCCACCCTCAAGCACT +
Preference number: 2 (lower is better)
Translates to: ATSSQLIMQRWEGHFFLLDPDEN*VPPSST
Trigger: AGTGCTTGAGGGTGGAACTCAGTTCTCATCAGGATC...GAGGAGGAAGAAATGGCCTTCCCACCTCTGCATTATGAGCTGTGACGAGGTAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CCA 90 bp AAGCTGCATCCGAGGCAGGACCTCTGTAGGCTTCTGTCACATAGGGCACAAACATCCTTCAACTGTTCCTaGCCATGCTCAGCAGAGAAG +
Preference number: 2 (lower is better)
Translates to: KLHPRQDLCRLLSHRAQTSFNCS*PCSAEK
Trigger: CTTCTCTGCTGAGCATGGCCAGGAACAGTTGAAGGA...TGTTTGTGCCCTATGTGACAGAAGCCTACAGAGGTCCTGCCTCGGATGCAGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CCA 90 bp ATCTCCACCTTCAGTCCATGTTCTTCCTGGAGATGGGCCAGCAGTGACTTCAGTGCTGAGCGGATGAAGTaGTTTTCAGCCAGGTGCAGA +
Preference number: 2 (lower is better)
Translates to: ISTFSPCSSWRWASSDFSAERMK*FSARCR
Trigger: TCTGCACCTGGCTGAAAACCACTTCATCCGCTCAGC...ACTGAAGTCACTGCTGGCCCATCTCCAGGAAGAACATGGACTGAAGGTGGAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR TCA 90 bp ATAGTGGGTGCATCGAGCAGCGACATAGTGCCGGGCCTGGAAGCTGTCCAAAGCTTGAAGTATCTGCTGTaGGCTGAAGATGTAGGAATT +
Preference number: 2 (lower is better)
Translates to: IVGASSSDIVPGLEAVQSLKYLL*AEDVGI
Trigger: AATTCCTACATCTTCAGCTCACAGCAGATACTTCAA...GCTTTGGACAGCTTCCAGGCCCGGCACTATGTCGCTGCTCGATGCACCCACTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR TCA 90 bp ACGAAAGGTACCATGGGATCGGAGCCCGCTTACCACCTTATACAGCTCCAGGCCAAGGCAGGAAACATCTaGAACTATTTTAGGAGCAGC +
Preference number: 2 (lower is better)
Translates to: TKGTMGSEPAYHLIQLQAKAGNI*NYFRSS
Trigger: GCTGCTCCTAAAATAGTTTCAGATGTTTCCTGCCTT...GGCCTGGAGCTGTATAAGGTGGTAAGCGGGCTCCGATCCCATGGTACCTTTCGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
3UTR-3UTR GCA 90 bp AAGCAGCAACAACACCGTTCACCCTGGAGAAAAAGCTGTCATCGTAGATATCCTGAGCCAGGCAGCCCATaGATCCGTGCATACAGGTTG +
Preference number: 2 (lower is better)
Translates to: KQQQHRSPWRKSCHRRYPEPGSP*IRAYRL
Trigger: CAACCTGTATGCACGGATGCATGGGCTGCCTGGCTC...AGGATATCTACGATGACAGCTTTTTCTCCAGGGTGAACGGTGTTGTTGCTGCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CCA 90 bp GGAGCCCGCTTACCACCTTATACAGCTCCAGGCCCAGTAAGCCTGCCACAACTGTTTGTTGGCTCCATTTaGTGGAAGAATGCTTCAAGA +
Preference number: 2 (lower is better)
Translates to: GARLPPYTAPGPVSLPQLFVGSI*WKNASR
Trigger: TCTTGAAGCATTCTTCCACCAAATGGAGCCAACAAA...CAGTTGTGGCAGGCTTACTGGGCCTGGAGCTGTATAAGGTGGTAAGCGGGCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
3UTR-3UTR CCA 90 bp ATCTCCACCTTCAGTCCATGTTCTTCCTGGAGATGGGCCAGCAGTGACTTCAGTGAGAGATGTCCTGGATaGCAGCTGTCATGGGTTCTA +
Preference number: 2 (lower is better)
Translates to: ISTFSPCSSWRWASSDFSERCPG*QLSWVL
Trigger: TAGAACCCATGACAGCTGCCATCCAGGACATCTCTC...ACTGAAGTCACTGCTGGCCCATCTCCAGGAAGAACATGGACTGAAGGTGGAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR-3UTR TCA 90 bp ACGAAAGGTACCATGGGATCGGAGCCCGCTTACCACCTTATACAGCTCCAGGCCTTGAAGTATCTGCTGTaGGCTGAAGATGTAGGAATT +
Preference number: 2 (lower is better)
Translates to: TKGTMGSEPAYHLIQLQALKYLL*AEDVGI
Trigger: AATTCCTACATCTTCAGCTCACAGCAGATACTTCAA...GGCCTGGAGCTGTATAAGGTGGTAAGCGGGCTCCGATCCCATGGTACCTTTCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR TCA 90 bp AGAGGAAATGCATGTCGTGGTTGGGGTCAAACTGCAAGGGATGTGGACACTTGTGATCCTGATGAGAACTaGGTTCCACCCTCAAGCACT +
Preference number: 2 (lower is better)
Translates to: RGNACRGWGQTARDVDTCDPDEN*VPPSST
Trigger: AGTGCTTGAGGGTGGAACTCAGTTCTCATCAGGATC...ACAAGTGTCCACATCCCTTGCAGTTTGACCCCAACCACGACATGCATTTCCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR GCA 90 bp ATCTCCACCTTCAGTCCATGTTCTTCCTGGAGATGGGCCAGCAGTGACTTCAGTATACAGGTTGGCAGCTaGCAGTACGTAGAGGAAATG +
Preference number: 2 (lower is better)
Translates to: ISTFSPCSSWRWASSDFSIQVGS*QYVEEM
Trigger: CATTTCCTCTACGTACTGGCAGCTGCCAACCTGTAT...ACTGAAGTCACTGCTGGCCCATCTCCAGGAAGAACATGGACTGAAGGTGGAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR GCA 90 bp GGTGTTGAGCCTGCTTTTCAGATGACCATCCTGAAGAATAGAGCAGAGCCTGGTTCGTCCAGGGTTTCCTaGAGTTCCTTCAACTGTTCC +
Preference number: 2 (lower is better)
Translates to: GVEPAFQMTILKNRAEPGSSRVS*SSFNCS
Trigger: GGAACAGTTGAAGGAACTGCAGGAAACCCTGGACGA...ACCAGGCTCTGCTCTATTCTTCAGGATGGTCATCTGAAAAGCAGGCTCAACACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR TCA 90 bp CCACACAGTCTTGCCAGGTCTGTGGGCGAGTTCTCAGGACACCCATCACTTGCTACAAGTTTTTATTGTTaGAGTATCTGCTGTGAGCTG +
Preference number: 2 (lower is better)
Translates to: PHSLARSVGEFSGHPSLATSFYC*SICCEL
Trigger: CAGCTCACAGCAGATACTTCAACAATAAAAACTTGT...AGCAAGTGATGGGTGTCCTGAGAACTCGCCCACAGACCTGGCAAGACTGTGTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR CAA 90 bp AAGGACCCGTCTTTCTGCACACGGACAGACTGTGGAGAACAACTGTaGAGTTCAACCATGCCTTCAATGTCTGAGAAAATCACCAAGTCC +
Preference number: 2 (lower is better)
Translates to: KDPSFCTRTDCGEQL*SSTMPSMSEKITKS
Trigger: GGACTTGGTGATTTTCTCAGACATTGAAGGCATGGTTGAACTCAACAGTTGTTCTCCACAGTCTGTCCGTGTGCAGAAAGACGGGTCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR-3UTR GCA 90 bp CCACACAGTCTTGCCAGGTCTGTGGGCGAGTTCTCAGGACACCCATCACTTGCTGATGTAGGAATTTTATaGAGAGTTTGTTATGGCCAA +
Preference number: 2 (lower is better)
Translates to: PHSLARSVGEFSGHPSLADVGIL*RVCYGQ
Trigger: TTGGCCATAACAAACTCTGCATAAAATTCCTACATC...AGCAAGTGATGGGTGTCCTGAGAACTCGCCCACAGACCTGGCAAGACTGTGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR GCA 90 bp GCCTGGTGGTGGAGAAGCATCTCCACCTTCAGTCCATGTTCTTCCTGGAGATGGGATGTAGGAATTTTATaGAGAGTTTGTTATGGCCAA +
Preference number: 2 (lower is better)
Translates to: AWWWRSISTFSPCSSWRWDVGIL*RVCYGQ
Trigger: TTGGCCATAACAAACTCTGCATAAAATTCCTACATC...CCATCTCCAGGAAGAACATGGACTGAAGGTGGAGATGCTTCTCCACCACCAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR TCA 72 bp GTGGGCAGGTATATGGAGTCGCTCGTAGGTCTGGGTTaGGACGATGGGCTGCTGCGGCGGCCACCTCTGCCT +
Preference number: 3 (lower is better)
Translates to: VGRYMESLVGLG*DDGLLRRPPLP
Trigger: AGGCAGAGGTGGCCGCCGCAGCAGCCCATCGTCTCAACCCAGACCTACGAGCGACTCCATATACCTGCCCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR CCA 72 bp GATCCTGGGCCCACTGCACGCTGTGCTCCATCGAGCTaGGGATGTGCCTCAGGGTACACACAGGGTAGGGAG +
Preference number: 3 (lower is better)
Translates to: DPGPTARCAPSS*GCASGYTQGRE
Trigger: CTCCCTACCCTGTGTGTACCCTGAGGCACATCCCCAGCTCGATGGAGCACAGCGTGCAGTGGGCCCAGGATC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR TCA 72 bp ACAGAGGGCAACCTAGTGTGGACAAGAGGGTGCTGGTaGGCCCTCAAGAGCCCCAACCAGGAGCAGGAGCGG +
Preference number: 3 (lower is better)
Translates to: TEGNLVWTRGCW*ALKSPNQEQER
Trigger: CCGCTCCTGCTCCTGGTTGGGGCTCTTGAGGGCTCACCAGCACCCTCTTGTCCACACTAGGTTGCCCTCTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
3UTR CCA 72 bp GTATATGGAGTCGCTCGTAGGTCTGGGTTGAGACGATaGGCTGCTGCGGCGGCCACCTCTGCCTTGGGCCTT +
Preference number: 3 (lower is better)
Translates to: VYGVARRSGLRR*AAAAATSALGL
Trigger: AAGGCCCAAGGCAGAGGTGGCCGCCGCAGCAGCCCATCGTCTCAACCCAGACCTACGAGCGACTCCATATAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR CCA 72 bp CGGTCCCAACAGGTCCATTTCAGGTCACGGAACGACTaGACGGCTGGGGCAGAAGGCGCTGAGCGGATGAAG +
Preference number: 3 (lower is better)
Translates to: RSQQVHFRSRND*TAGAEGAERMK
Trigger: CTTCATCCGCTCAGCGCCTTCTGCCCCAGCCGTCCAGTCGTTCCGTGACCTGAAATGGACCTGTTGGGACCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR TCA 72 bp ACCTCTGTAGGCTTCTGTCACATAGGGCACAAACACTaGAGCACTCCCCCAGGTGCCCTGGGTGCCGGCCTC +
Preference number: 3 (lower is better)
Translates to: TSVGFCHIGHKH*STPPGALGAGL
Trigger: GAGGCCGGCACCCAGGGCACCTGGGGGAGTGCTTCAGTGTTTGTGCCCTATGTGACAGAAGCCTACAGAGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR TCA 72 bp TCTAGCAGCCGCGTCAGCAGTTCCCTGAGTGCAGGCTaGCTTTGTGAGCCAGGCAGCCCATGCATCCGTGCA +
Preference number: 3 (lower is better)
Translates to: SSSRVSSSLSAG*LCEPGSPCIRA
Trigger: TGCACGGATGCATGGGCTGCCTGGCTCACAAAGTCAGCCTGCACTCAGGGAACTGCTGACGCGGCTGCTAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR CCA 72 bp CCTGGCCATGCTCAGCAGAGAAGAGGTTCTGGGGCCTaGAATCAGACTCTAGCAGCCGCGTCAGCAGTTCCC +
Preference number: 3 (lower is better)
Translates to: PGHAQQRRGSGA*NQTLAAASAVP
Trigger: GGGAACTGCTGACGCGGCTGCTAGAGTCTGATTCCAGGCCCCAGAACCTCTTCTCTGCTGAGCATGGCCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CAA 90 bp GCTGACTTTGTGAGCCAGGCAGCCCATGCATCCGTGCATACAGGTTGGCAGCTGCCACACCACACAGTCTaGCCAGGTCTGTGGGCGAGT +
Preference number: 3 (lower is better)
Translates to: ADFVSQAAHASVHTGWQLPHHTV*PGLWAS
Trigger: ACTCGCCCACAGACCTGGCAAGACTGTGTGGTGTGG...CAGCTGCCAACCTGTATGCACGGATGCATGGGCTGCCTGGCTCACAAAGTCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR TCA 72 bp ACGACTGGACGGCTGGGGCAGAAGGCGCTGAGCGGATaGAGTGGTTTTCAGCCAGGTGCAGATAGCTGTGAC +
Preference number: 3 (lower is better)
Translates to: TTGRLGQKALSG*SGFQPGADSCD
Trigger: GTCACAGCTATCTGCACCTGGCTGAAAACCACTTCATCCGCTCAGCGCCTTCTGCCCCAGCCGTCCAGTCGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR GCA 72 bp AGTTGCCAGTGGCCAAGAGCCCACACCACACAGTCTTaGCAGGTCTGTGGGCGAGTTCTCAGGACACCCATC +
Preference number: 3 (lower is better)
Translates to: SCQWPRAHTTQS*QVCGRVLRTPI
Trigger: GATGGGTGTCCTGAGAACTCGCCCACAGACCTGGCAAGACTGTGTGGTGTGGGCTCTTGGCCACTGGCAACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CAA 90 bp CTCCATCGAGCTGGGGATGTGCCTCAGGGTACACACAGGGTAGGGAGCATCCTCGGCCTTCTAACATCCTaGGGCCTGAAGAGGAACTGC +
Preference number: 3 (lower is better)
Translates to: LHRAGDVPQGTHRVGSILGLLTS*GLKRNC
Trigger: GCAGTTCCTCTTCAGGCCCAAGGATGTTAGAAGGCC...GAGGATGCTCCCTACCCTGTGTGTACCCTGAGGCACATCCCCAGCTCGATGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CAA 90 bp TGCCAGTGGCCAAGAGCCCACACCACACAGTCTTGCCAGGTCTGTGGGCGAGTTGAAGAGTCCCTCAAATaGATCCTGGGCCCACTGCAC +
Preference number: 3 (lower is better)
Translates to: CQWPRAHTTQSCQVCGRVEESLK*ILGPLH
Trigger: GTGCAGTGGGCCCAGGATCAATTTGAGGGACTCTTC...AACTCGCCCACAGACCTGGCAAGACTGTGTGGTGTGGGCTCTTGGCCACTGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CAA 90 bp CCACACAGTCTTGCCAGGTCTGTGGGCGAGTTCTCAGGACACCCATCACTTGCTCCACACCACACAGTCTaGCCAGGTCTGTGGGCGAGT +
Preference number: 3 (lower is better)
Translates to: PHSLARSVGEFSGHPSLAPHHTV*PGLWAS
Trigger: ACTCGCCCACAGACCTGGCAAGACTGTGTGGTGTGG...AGCAAGTGATGGGTGTCCTGAGAACTCGCCCACAGACCTGGCAAGACTGTGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CAA 90 bp CTCCATCGAGCTGGGGATGTGCCTCAGGGTACACACAGGGTAGGGAGCATCCTCATCATGGAAGCACAGTaGCCAGTGGCCAAGAGCCCA +
Preference number: 3 (lower is better)
Translates to: LHRAGDVPQGTHRVGSILIMEAQ*PVAKSP
Trigger: TGGGCTCTTGGCCACTGGCAACTGTGCTTCCATGAT...GAGGATGCTCCCTACCCTGTGTGTACCCTGAGGCACATCCCCAGCTCGATGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CAA 90 bp TCTGGGTTGAGACGATGGGCTGCTGCGGCGGCCACCTCTGCCTTGGGCCTTCTATGGAAGGAATGTCTTTaGGTGTCTCCTCTCAGGGTG +
Preference number: 3 (lower is better)
Translates to: SGLRRWAAAAATSALGLLWKECL*VSPLRV
Trigger: CACCCTGAGAGGAGACACCAAAAGACATTCCTTCCA...TAGAAGGCCCAAGGCAGAGGTGGCCGCCGCAGCAGCCCATCGTCTCAACCCAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR-3UTR CAA 90 bp CTCCATCGAGCTGGGGATGTGCCTCAGGGTACACACAGGGTAGGGAGCATCCTCCACTACTCAGGGCAATaGTGCGGAGGAGAGCCTCAT +
Preference number: 3 (lower is better)
Translates to: LHRAGDVPQGTHRVGSILHYSGQ*CGGEPH
Trigger: ATGAGGCTCTCCTCCGCACAATTGCCCTGAGTAGTG...GAGGATGCTCCCTACCCTGTGTGTACCCTGAGGCACATCCCCAGCTCGATGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR-3UTR CAA 90 bp GGAGCCCGCTTACCACCTTATACAGCTCCAGGCCCAGTAAGCCTGCCACAACTGGGCCTTCTAACATCCTaGGGCCTGAAGAGGAACTGC +
Preference number: 3 (lower is better)
Translates to: GARLPPYTAPGPVSLPQLGLLTS*GLKRNC
Trigger: GCAGTTCCTCTTCAGGCCCAAGGATGTTAGAAGGCC...CAGTTGTGGCAGGCTTACTGGGCCTGGAGCTGTATAAGGTGGTAAGCGGGCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CAA 90 bp CACCTTCAGGCGGTCCCAACAGGTCCATTTCAGGTCACGGAACGACTGGACGGCTTATGCCTCACGGTCTaGGGTCTCTTGACTTCGGTG +
Preference number: 3 (lower is better)
Translates to: HLQAVPTGPFQVTERLDGLCLTV*GLLTSV
Trigger: CACCGAAGTCAAGAGACCCAAGACCGTGAGGCATAA...GCCGTCCAGTCGTTCCGTGACCTGAAATGGACCTGTTGGGACCGCCTGAAGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR TCA 72 bp AGGGACATGGTAGAGCCTGGCTACGACCGGCTCACCTaGGGCACAGGTGTTGAGCCTGCTTTTCAGATGACC +
Preference number: 3 (lower is better)
Translates to: RDMVEPGYDRLT*GTGVEPAFQMT
Trigger: GGTCATCTGAAAAGCAGGCTCAACACCTGTGCCTCAGGTGAGCCGGTCGTAGCCAGGCTCTACCATGTCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
3UTR TCA 72 bp GGCATGAACTTCCTGGAGATGGCCTTTAGGACCTCCTaGGCAGCCACTCCTCCCATAATGGCTGCCATGGGG +
Preference number: 3 (lower is better)
Translates to: GMNFLEMAFRTS*AATPPIMAAMG
Trigger: CCCCATGGCAGCCATTATGGGAGGAGTGGCTGCTCAGGAGGTCCTAAAGGCCATCTCCAGGAAGTTCATGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR CCA 72 bp TCCAGCCGGTCACGTGCTGAACCAGTTCTGTCACCCTaGTATGGGAGGGGGTTTAGGGGAGACTCTGTAGGT +
Preference number: 3 (lower is better)
Translates to: SSRSRAEPVLSP*YGRGFRGDSVG
Trigger: ACCTACAGAGTCTCCCCTAAACCCCCTCCCATACCAGGGTGACAGAACTGGTTCAGCACGTGACCGGCTGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
3UTR CCA 72 bp AGCTCAGCTCAAACACCAGAACCTTCAGCCCAGGCTTaGGCTTCCAGCCGGTCACGTGCTGAACCAGTTCTG +
Preference number: 3 (lower is better)
Translates to: SSAQTPEPSAQA*ASSRSRAEPVL
Trigger: CAGAACTGGTTCAGCACGTGACCGGCTGGAAGCCCAAGCCTGGGCTGAAGGTTCTGGTGTTTGAGCTGAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CAA 90 bp ATCTCCACCTTCAGTCCATGTTCTTCCTGGAGATGGGCCAGCAGTGACTTCAGTGCTCGTAGGTCTGGGTaGAGACGATGGGCTGCTGCG +
Preference number: 3 (lower is better)
Translates to: ISTFSPCSSWRWASSDFSARRSG*RRWAAA
Trigger: CGCAGCAGCCCATCGTCTCAACCCAGACCTACGAGC...ACTGAAGTCACTGCTGGCCCATCTCCAGGAAGAACATGGACTGAAGGTGGAGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CAA 90 bp GGTGTTGAGCCTGCTTTTCAGATGACCATCCTGAAGAATAGAGCAGAGCCTGGTACCTTCAGCCCAGGCTaGGGCTTCCAGCCGGTCACG +
Preference number: 3 (lower is better)
Translates to: GVEPAFQMTILKNRAEPGTFSPG*GFQPVT
Trigger: CGTGACCGGCTGGAAGCCCAAGCCTGGGCTGAAGGT...ACCAGGCTCTGCTCTATTCTTCAGGATGGTCATCTGAAAAGCAGGCTCAACACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR TCA 72 bp CTTCAGTCCATGTTCTTCCTGGAGATGGGCCAGCAGTaGCTTCAGTGTCCTTTCAGGCTGCACAGCGGGCAC +
Preference number: 3 (lower is better)
Translates to: LQSMFFLEMGQQ*LQCPFRLHSGH
Trigger: GTGCCCGCTGTGCAGCCTGAAAGGACACTGAAGTCACTGCTGGCCCATCTCCAGGAAGAACATGGACTGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR TCA 72 bp GTGTCTCCTCTCAGGGTGACAATGCCGGGGAAACCCTaGGAGATGTCCTGGATGGCAGCTGTCATGGGTTCT +
Preference number: 3 (lower is better)
Translates to: VSPLRVTMPGKP*EMSWMAAVMGS
Trigger: AGAACCCATGACAGCTGCCATCCAGGACATCTCTCAGGGTTTCCCCGGCATTGTCACCCTGAGAGGAGACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR GCA 72 bp AGGCAGCCCATGCATCCGTGCATACAGGTTGGCAGCTaGCAGTACGTAGAGGAAATGCATGTCGTGGTTGGG +
Preference number: 3 (lower is better)
Translates to: RQPMHPCIQVGS*QYVEEMHVVVG
Trigger: CCCAACCACGACATGCATTTCCTCTACGTACTGGCAGCTGCCAACCTGTATGCACGGATGCATGGGCTGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR CCA 72 bp GTGAGCCAGGCAGCCCATGCATCCGTGCATACAGGTTaGCAGCTGCCAGTACGTAGAGGAAATGCATGTCGT +
Preference number: 3 (lower is better)
Translates to: VSQAAHASVHTG*QLPVRRGNACR
Trigger: ACGACATGCATTTCCTCTACGTACTGGCAGCTGCCAACCTGTATGCACGGATGCATGGGCTGCCTGGCTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR CCA 72 bp GGTGTGGCTACCTCGTCACAGCTCATAATGCAGAGGTaGGAAGGCCATTTCTTCCTCCTCGCCCTCACAGCT +
Preference number: 3 (lower is better)
Translates to: GVATSSQLIMQR*EGHFFLLALTA
Trigger: AGCTGTGAGGGCGAGGAGGAAGAAATGGCCTTCCCACCTCTGCATTATGAGCTGTGACGAGGTAGCCACACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CAA 90 bp TCTGGGTTGAGACGATGGGCTGCTGCGGCGGCCACCTCTGCCTTGGGCCTTCTAAATTTTATGCAGAGTTaGTTATGGCCAAGTGGTGGC +
Preference number: 3 (lower is better)
Translates to: SGLRRWAAAAATSALGLLNFMQS*LWPSGG
Trigger: GCCACCACTTGGCCATAACAAACTCTGCATAAAATT...TAGAAGGCCCAAGGCAGAGGTGGCCGCCGCAGCAGCCCATCGTCTCAACCCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CAA 90 bp GCCTGGTGGTGGAGAAGCATCTCCACCTTCAGTCCATGTTCTTCCTGGAGATGGGAAGAGTCCCTCAAATaGATCCTGGGCCCACTGCAC +
Preference number: 3 (lower is better)
Translates to: AWWWRSISTFSPCSSWRWEESLK*ILGPLH
Trigger: GTGCAGTGGGCCCAGGATCAATTTGAGGGACTCTTC...CCATCTCCAGGAAGAACATGGACTGAAGGTGGAGATGCTTCTCCACCACCAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CAA 90 bp GGCCACCTCTGCCTTGGGCCTTCTAACATCCTTGGGCCTGAAGAGGAACTGCCTGGAAGTGCATGTCTGTaGGTAGCAGTTGATGGTCTC +
Preference number: 3 (lower is better)
Translates to: GHLCLGPSNILGPEEELPGSACL*VAVDGL
Trigger: GAGACCATCAACTGCTACCAACAGACATGCACTTCC...AGGCAGTTCCTCTTCAGGCCCAAGGATGTTAGAAGGCCCAAGGCAGAGGTGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR TCA 72 bp AACCAGGAGCAGGAGCGGCCCAAGGCAGGAAACATCTaGAACTATTTTAGGAGCAGCTGGTGGGGCAGGCAA +
Preference number: 3 (lower is better)
Translates to: NQEQERPKAGNI*NYFRSSWWGRQ
Trigger: TTGCCTGCCCCACCAGCTGCTCCTAAAATAGTTTCAGATGTTTCCTGCCTTGGGCCGCTCCTGCTCCTGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
3UTR TCA 72 bp GCATCATCAGGATCCCATGGCTTGGGTAGCCGGCCATaGAGTTGCTGGAACTTGTGCAGTACATGGAAGGCC +
Preference number: 3 (lower is better)
Translates to: ASSGSHGLGSRP*SCWNLCSTWKA
Trigger: GGCCTTCCATGTACTGCACAAGTTCCAGCAACTTCATGGCCGGCTACCCAAGCCATGGGATCCTGATGATGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR CCA 72 bp CCCTCAAGCACTTTATCATGGAAGCACAGTTGCCAGTaGCCAAGAGCCCACACCACACAGTCTTGCCAGGTC +
Preference number: 3 (lower is better)
Translates to: PSSTLSWKHSCQ*PRAHTTQSCQV
Trigger: GACCTGGCAAGACTGTGTGGTGTGGGCTCTTGGCCACTGGCAACTGTGCTTCCATGATAAAGTGCTTGAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR CCA 72 bp CCACCACAGTCTCTGCATCATCAGGATCCCATGGCTTaGGTAGCCGGCCATGAAGTTGCTGGAACTTGTGCA +
Preference number: 3 (lower is better)
Translates to: PPQSLHHQDPMA*VAGHEVAGTCA
Trigger: TGCACAAGTTCCAGCAACTTCATGGCCGGCTACCCAAGCCATGGGATCCTGATGATGCAGAGACTGTGGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR-3UTR CAA 90 bp GGGATCGGAGCCCGCTTACCACCTTATACAGCTCCAGGCCCAGTAAGCCTGCCAAGTAACGGGAGAAAGTaGTCGTATCTCCAATCTCCA +
Preference number: 3 (lower is better)
Translates to: GIGARLPPYTAPGPVSLPSNGRK*SYLQSP
Trigger: TGGAGATTGGAGATACGACAACTTTCTCCCGTTACT...TGGCAGGCTTACTGGGCCTGGAGCTGTATAAGGTGGTAAGCGGGCTCCGATCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR-3UTR CAA 90 bp CTCAAGCACTTTATCATGGAAGCACAGTTGCCAGTGGCCAAGAGCCCACACCACACGGTCTTGGGTCTCTaGACTTCGGTGACAACCCCA +
Preference number: 3 (lower is better)
Translates to: LKHFIMEAQLPVAKSPHHTVLGL*TSVTTP
Trigger: TGGGGTTGTCACCGAAGTCAAGAGACCCAAGACCGT...GTGGTGTGGGCTCTTGGCCACTGGCAACTGTGCTTCCATGATAAAGTGCTTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR TCA 72 bp CGTGGAAGGAATGTCTTTTGGTGTCTCCTCTCAGGGTaGCAATGCCGGGGAAACCCTGAGAGATGTCCTGGA +
Preference number: 3 (lower is better)
Translates to: RGRNVFWCLLSG*QCRGNPERCPG
Trigger: TCCAGGACATCTCTCAGGGTTTCCCCGGCATTGTCACCCTGAGAGGAGACACCAAAAGACATTCCTTCCACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR GCA 72 bp GTTCCACCCTCAAGCACTTTATCATGGAAGCACAGTTaGCAGTGGCCAAGAGCCCACACCACACAGTCTTGC +
Preference number: 3 (lower is better)
Translates to: VPPSSTLSWKHS*QWPRAHTTQSC
Trigger: GCAAGACTGTGTGGTGTGGGCTCTTGGCCACTGGCAACTGTGCTTCCATGATAAAGTGCTTGAGGGTGGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR GCA 72 bp TGGGGCTTAAGGTACCAGCACTACTCAGGGCAATTGTaGGGAGGAGAGCCTCATCCAGTGACTCTTCTTCTG +
Preference number: 3 (lower is better)
Translates to: WGLRYQHYSGQL*GGEPHPVTLLL
Trigger: CAGAAGAAGAGTCACTGGATGAGGCTCTCCTCCGCACAATTGCCCTGAGTAGTGCTGGTACCTTAAGCCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR-3UTR CAA 90 bp ACGAAAGGTACCATGGGATCGGAGCCCGCTTACCACCTTATACAGCTCCAGGCCAAGGGATGTGGACACTaGTTGGATCCTGATGAGAAC +
Preference number: 3 (lower is better)
Translates to: TKGTMGSEPAYHLIQLQAKGCGH*LDPDEN
Trigger: GTTCTCATCAGGATCCAACAAGTGTCCACATCCCTT...GGCCTGGAGCTGTATAAGGTGGTAAGCGGGCTCCGATCCCATGGTACCTTTCGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR TCA 72 bp ATGGTCTCTGTAGATAGTCTGAAGAGTCCCTCAAATTaGTCCTGGGCCCACTGCACGCTGTGCTCCATCGAG +
Preference number: 3 (lower is better)
Translates to: MVSVDSLKSPSN*SWAHCTLCSIE
Trigger: CTCGATGGAGCACAGCGTGCAGTGGGCCCAGGATCAATTTGAGGGACTCTTCAGACTATCTACAGAGACCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR CCA 72 bp CCCTGGAGAAAAAGCTGTCATCGTAGATATCCTCTGTaGTGGGATCCAGTGGGCAGGTATATGGAGTCGCTC +
Preference number: 3 (lower is better)
Translates to: PWRKSCHRRYPL*WDPVGRYMESL
Trigger: GAGCGACTCCATATACCTGCCCACTGGATCCCACCACAGAGGATATCTACGATGACAGCTTTTTCTCCAGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR CCA 72 bp CAGCTGCCAGTACGTAGAGGAAATGCATGTCGTGGTTaGGGTCAAACTGCAAGGGATGTGGACACTTGTTGG +
Preference number: 3 (lower is better)
Translates to: QLPVRRGNACRG*GQTARDVDTCW
Trigger: CCAACAAGTGTCCACATCCCTTGCAGTTTGACCCCAACCACGACATGCATTTCCTCTACGTACTGGCAGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CAA 90 bp ATGTCGTGGTTGGGGTCAAACTGCAAGGGATGTGGACACTTGTTGGATCCTGATATCATGGAAGCACAGTaGCCAGTGGCCAAGAGCCCA +
Preference number: 3 (lower is better)
Translates to: MSWLGSNCKGCGHLLDPDIMEAQ*PVAKSP
Trigger: TGGGCTCTTGGCCACTGGCAACTGTGCTTCCATGAT...ATCAGGATCCAACAAGTGTCCACATCCCTTGCAGTTTGACCCCAACCACGACAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CAA 90 bp CTCAAGCACTTTATCATGGAAGCACAGTTGCCAGTGGCCAAGAGCCCACACCACTGTGGAGAACAACTGTaGAGTTCAACCATGCCTTCA +
Preference number: 3 (lower is better)
Translates to: LKHFIMEAQLPVAKSPHHCGEQL*SSTMPS
Trigger: TGAAGGCATGGTTGAACTCAACAGTTGTTCTCCACA...GTGGTGTGGGCTCTTGGCCACTGGCAACTGTGCTTCCATGATAAAGTGCTTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR CCA 72 bp TGGAGAAAAAGCTGTCATCGTAGATATCCTCTGTGGTaGGATCCAGTGGGCAGGTATATGGAGTCGCTCGTA +
Preference number: 3 (lower is better)
Translates to: WRKSCHRRYPLW*DPVGRYMESLV
Trigger: TACGAGCGACTCCATATACCTGCCCACTGGATCCCACCACAGAGGATATCTACGATGACAGCTTTTTCTCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR CCA 72 bp GGAAGCTGTCCAAAGCAGCAACAACACCGTTCACCCTaGAGAAAAAGCTGTCATCGTAGATATCCTCTGTGG +
Preference number: 3 (lower is better)
Translates to: GSCPKQQQHRSP*RKSCHRRYPLW
Trigger: CCACAGAGGATATCTACGATGACAGCTTTTTCTCCAGGGTGAACGGTGTTGTTGCTGCTTTGGACAGCTTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR-3UTR CAA 90 bp GGTGACAACCCCACCTCTCAAGTAACGGGAGAAAGTTGTCGTATCTCCAATCTCAATTTTATGCAGAGTTaGTTATGGCCAAGTGGTGGC +
Preference number: 3 (lower is better)
Translates to: GDNPTSQVTGESCRISNLNFMQS*LWPSGG
Trigger: GCCACCACTTGGCCATAACAAACTCTGCATAAAATT...GAGATTGGAGATACGACAACTTTCTCCCGTTACTTGAGAGGTGGGGTTGTCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR TCA 72 bp AAGGGATGTGGACACTTGTTGGATCCTGATGAGAACTaGGTTCCACCCTCAAGCACTTTATCATGGAAGCAC +
Preference number: 3 (lower is better)
Translates to: KGCGHLLDPDEN*VPPSSTLSWKH
Trigger: GTGCTTCCATGATAAAGTGCTTGAGGGTGGAACTCAGTTCTCATCAGGATCCAACAAGTGTCCACATCCCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR TCA 72 bp AGAACAACTGTTGAGTTCAACCATGCCTTCAATGTCTaGGAAAATCACCAAGTCCCCATCGTGGAAGGAATG +
Preference number: 3 (lower is better)
Translates to: RTTVEFNHAFNV*ENHQVPIVEGM
Trigger: CATTCCTTCCACGATGGGGACTTGGTGATTTTCTCAGACATTGAAGGCATGGTTGAACTCAACAGTTGTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR TCA 72 bp CTTTCTGCACACGGACAGACTGTGGAGAACAACTGTTaGGTTCAACCATGCCTTCAATGTCTGAGAAAATCA +
Preference number: 3 (lower is better)
Translates to: LSAHGQTVENNC*VQPCLQCLRKS
Trigger: TGATTTTCTCAGACATTGAAGGCATGGTTGAACTCAACAGTTGTTCTCCACAGTCTGTCCGTGTGCAGAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR TCA 72 bp CAACAAGTTTTTATTGTTGAAGTATCTGCTGTGAGCTaGAGATGTAGGAATTTTATGCAGAGTTTGTTATGG +
Preference number: 3 (lower is better)
Translates to: QQVFIVEVSAVS*RCRNFMQSLLW
Trigger: CCATAACAAACTCTGCATAAAATTCCTACATCTTCAGCTCACAGCAGATACTTCAACAATAAAAACTTGTTG
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035216.11
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR CAA 72 bp AGTGGGCAGGTATATGGAGTCGCTCGTAGGTCTGGGTaGAGACGATGGGCTGCTGCGGCGGCCACCTCTGCC +
Preference number: 4 (lower is better)
Translates to: SGQVYGVARRSG*RRWAAAAATSA
Trigger: GGCAGAGGTGGCCGCCGCAGCAGCCCATCGTCTCAACCCAGACCTACGAGCGACTCCATATACCTGCCCACT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
CDS-3UTR GCA 90 bp GTCGCTCGTAGGTCTGGGTTGAGACGATGGGCTGCTGCGGCGGCCACCTCTGCCTCAGCTCCCAGACCCTaGAGGCCACATAGCAAGACT +
Preference number: 4 (lower is better)
Translates to: VARRSGLRRWAAAAATSASAPRP*RPHSKT
Trigger: AGTCTTGCTATGTGGCCTGCAGGGTCTGGGAGCTGA...GGCAGAGGTGGCCGCCGCAGCAGCCCATCGTCTCAACCCAGACCTACGAGCGAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
3UTR CAA 72 bp GCGGCGGCCACCTCTGCCTTGGGCCTTCTAACATCCTaGGGCCTGAAGAGGAACTGCCTGCTGAGGTTGGAG +
Preference number: 4 (lower is better)
Translates to: AAATSALGLLTS*GLKRNCLLRLE
Trigger: CTCCAACCTCAGCAGGCAGTTCCTCTTCAGGCCCAAGGATGTTAGAAGGCCCAAGGCAGAGGTGGCCGCCGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR CAA 72 bp TTGAGACGATGGGCTGCTGCGGCGGCCACCTCTGCCTaGGGCCTTCTAACATCCTTGGGCCTGAAGAGGAAC +
Preference number: 4 (lower is better)
Translates to: LRRWAAAAATSA*GLLTSLGLKRN
Trigger: GTTCCTCTTCAGGCCCAAGGATGTTAGAAGGCCCAAGGCAGAGGTGGCCGCCGCAGCAGCCCATCGTCTCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
CDS-3UTR TCA 90 bp TCTGGGTTGAGACGATGGGCTGCTGCGGCGGCCACCTCTGCCTTGGGCCTTCTATCTGAAAGGAAACACTaGGCAGCCAAGTCAGCCCAG +
Preference number: 4 (lower is better)
Translates to: SGLRRWAAAAATSALGLLSERKH*AAKSAQ
Trigger: CTGGGCTGACTTGGCTGCTCAGTGTTTCCTTTCAGA...TAGAAGGCCCAAGGCAGAGGTGGCCGCCGCAGCAGCCCATCGTCTCAACCCAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
CDS-3UTR TCA 90 bp CACCTTCAGGCGGTCCCAACAGGTCCATTTCAGGTCACGGAACGACTGGACGGCATGCCGGGGAAACCCTaGGAGATGTCCTGGATGGCA +
Preference number: 4 (lower is better)
Translates to: HLQAVPTGPFQVTERLDGMPGKP*EMSWMA
Trigger: TGCCATCCAGGACATCTCTCAGGGTTTCCCCGGCAT...GCCGTCCAGTCGTTCCGTGACCTGAAATGGACCTGTTGGGACCGCCTGAAGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
3UTR CAA 72 bp CAGTTGCCAGTGGCCAAGAGCCCACACCACACAGTCTaGCCAGGTCTGTGGGCGAGTTCTCAGGACACCCAT +
Preference number: 4 (lower is better)
Translates to: QLPVAKSPHHTV*PGLWASSQDTH
Trigger: ATGGGTGTCCTGAGAACTCGCCCACAGACCTGGCAAGACTGTGTGGTGTGGGCTCTTGGCCACTGGCAACTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
CDS-3UTR TCA 90 bp TGCACAGCGGGCACCTTCAGGCGGTCCCAACAGGTCCATTTCAGGTCACGGAACGTCAGCACCACTACCTaGAAACCCTGCAGTAGGTCC +
Preference number: 4 (lower is better)
Translates to: CTAGTFRRSQQVHFRSRNVSTTT*KPCSRS
Trigger: GGACCTACTGCAGGGTTTTCAGGTAGTGGTGCTGAC...GTTCCGTGACCTGAAATGGACCTGTTGGGACCGCCTGAAGGTGCCCGCTGTGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
CDS-3UTR CCA 90 bp AGACGATGGGCTGCTGCGGCGGCCACCTCTGCCTTGGGCCTTCTAACATCCTTGGACAATCCTCAGGGCTaGGAAGGAGCGTCTCATCTT +
Preference number: 4 (lower is better)
Translates to: RRWAAAAATSALGLLTSLDNPQG*EGASHL
Trigger: AAGATGAGACGCTCCTTCCCAGCCCTGAGGATTGTC...CAAGGATGTTAGAAGGCCCAAGGCAGAGGTGGCCGCCGCAGCAGCCCATCGTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
CDS-3UTR CCA 90 bp AAGCTGCATCCGAGGCAGGACCTCTGTAGGCTTCTGTCACATAGGGCACAAACAGCCCAGCAGGTGGGATaGGGATCATGCAGGGTGAGG +
Preference number: 4 (lower is better)
Translates to: KLHPRQDLCRLLSHRAQTAQQVG*GSCRVR
Trigger: CCTCACCCTGCATGATCCCCATCCCACCTGCTGGGC...TGTTTGTGCCCTATGTGACAGAAGCCTACAGAGGTCCTGCCTCGGATGCAGCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
CDS-3UTR TCA 90 bp TCCTGGCCATGCTCAGCAGAGAAGAGGTTCTGGGGCCTGGAATCAGACTCTAGCGTCAGCACCACTACCTaGAAACCCTGCAGTAGGTCC +
Preference number: 4 (lower is better)
Translates to: SWPCSAEKRFWGLESDSSVSTTT*KPCSRS
Trigger: GGACCTACTGCAGGGTTTTCAGGTAGTGGTGCTGAC...GCTAGAGTCTGATTCCAGGCCCCAGAACCTCTTCTCTGCTGAGCATGGCCAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
CDS-3UTR TCA 90 bp CACACCACACAGTCTTGCCAGGTCTGTGGGCGAGTTCTCAGGACACCCATCACTTTGGGTAGCCGGCCATaGAGTTGCTGGAACTTGTGC +
Preference number: 4 (lower is better)
Translates to: HTTQSCQVCGRVLRTPITLGSRP*SCWNLC
Trigger: GCACAAGTTCCAGCAACTTCATGGCCGGCTACCCAA...AGTGATGGGTGTCCTGAGAACTCGCCCACAGACCTGGCAAGACTGTGTGGTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
CDS-3UTR CCA 90 bp CGGGCACCTTCAGGCGGTCCCAACAGGTCCATTTCAGGTCACGGAACGACTGGAGAGAGATGTCCTGGATaGCAGCTGTCATGGGTTCTA +
Preference number: 4 (lower is better)
Translates to: RAPSGGPNRSISGHGTTGERCPG*QLSWVL
Trigger: TAGAACCCATGACAGCTGCCATCCAGGACATCTCTC...TCCAGTCGTTCCGTGACCTGAAATGGACCTGTTGGGACCGCCTGAAGGTGCCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
3UTR CAA 72 bp AGCAGAGCTATGTCCAGGGGCTTATGCCTCACGGTCTaGGGTCTCTTGACTTCGGTGACAACCCCACCTCTC +
Preference number: 4 (lower is better)
Translates to: SRAMSRGLCLTV*GLLTSVTTPPL
Trigger: GAGAGGTGGGGTTGTCACCGAAGTCAAGAGACCCAAGACCGTGAGGCATAAGCCCCTGGACATAGCTCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
CDS-3UTR TCA 90 bp GGGATCGGAGCCCGCTTACCACCTTATACAGCTCCAGGCCCAGTAAGCCTGCCACATGCCTTCAATGTCTaGGAAAATCACCAAGTCCCC +
Preference number: 4 (lower is better)
Translates to: GIGARLPPYTAPGPVSLPHAFNV*ENHQVP
Trigger: GGGGACTTGGTGATTTTCTCAGACATTGAAGGCATG...TGGCAGGCTTACTGGGCCTGGAGCTGTATAAGGTGGTAAGCGGGCTCCGATCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
CDS-3UTR TCA 90 bp GCTGACTTTGTGAGCCAGGCAGCCCATGCATCCGTGCATACAGGTTGGCAGCTGGAGAGCCTCATCCAGTaGCTCTTCTTCTGTCCCTTT +
Preference number: 4 (lower is better)
Translates to: ADFVSQAAHASVHTGWQLESLIQ*LFFCPF
Trigger: AAAGGGACAGAAGAAGAGTCACTGGATGAGGCTCTC...CAGCTGCCAACCTGTATGCACGGATGCATGGGCTGCCTGGCTCACAAAGTCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
CDS-3UTR GCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGAAGCACTCCCCCAGGTaGCCTGGGTGCCGGCCTCCA +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWKHSPR*PGCRPP
Trigger: TGGAGGCCGGCACCCAGGGCACCTGGGGGAGTGCTT...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR CCA 90 bp AGTCGTCCAGGGTTTCCTGCAGTTCCTTCAACTGTTCCTGGCCATGCTCAGCAGGGTCCCACCTTCAGCTaGTCTTCCAGCTTGGAGTCA +
Preference number: 4 (lower is better)
Translates to: SRPGFPAVPSTVPGHAQQGPTFS*SSSLES
Trigger: TGACTCCAAGCTGGAAGACCAGCTGAAGGTGGGACC...CTGCTGAGCATGGCCAGGAACAGTTGAAGGAACTGCAGGAAACCCTGGACGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR CAA 72 bp CTGGCCCTTAGCTCCACCCCCTCCCAGGCCCATTTGTaGGCTCCATTTGGTGGAAGAATGCTTCAAGAAGGT +
Preference number: 4 (lower is better)
Translates to: LALSSTPSQAHL*APFGGRMLQEG
Trigger: ACCTTCTTGAAGCATTCTTCCACCAAATGGAGCCAACAAATGGGCCTGGGAGGGGGTGGAGCTAAGGGCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
CDS-3UTR GCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGGTTGAGACGATGGGCTaGTGCGGCGGCCACCTCTGC +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWVETMG*CGGHLC
Trigger: GCAGAGGTGGCCGCCGCAGCAGCCCATCGTCTCAAC...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR CCA 90 bp CACACCACACAGTCTTGCCAGGTCTGTGGGCGAGTTCTCAGGACACCCATCACTGAGCGTCTCATCTTCTaGAAGACATTCAAGGGCGTC +
Preference number: 4 (lower is better)
Translates to: HTTQSCQVCGRVLRTPITERLIF*KTFKGV
Trigger: GACGCCCTTGAATGTCTTCCAGAAGATGAGACGCTC...AGTGATGGGTGTCCTGAGAACTCGCCCACAGACCTGGCAAGACTGTGTGGTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
3UTR CAA 72 bp CCATGGGGCTTAAGGTACCAGCACTACTCAGGGCAATaGTGCGGAGGAGAGCCTCATCCAGTGACTCTTCTT +
Preference number: 4 (lower is better)
Translates to: PWGLRYQHYSGQ*CGGEPHPVTLL
Trigger: AAGAAGAGTCACTGGATGAGGCTCTCCTCCGCACAATTGCCCTGAGTAGTGCTGGTACCTTAAGCCCCATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
CDS-3UTR GCA 90 bp GGTGTTGAGCCTGCTTTTCAGATGACCATCCTGAAGAATAGAGCAGAGCCTGGTGCTTCCTGGATCCTCTaGATAGCAGGCAGGCCCAGT +
Preference number: 4 (lower is better)
Translates to: GVEPAFQMTILKNRAEPGASWIL*IAGRPS
Trigger: ACTGGGCCTGCCTGCTATGCAGAGGATCCAGGAAGC...ACCAGGCTCTGCTCTATTCTTCAGGATGGTCATCTGAAAAGCAGGCTCAACACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
CDS-3UTR CCA 90 bp GTGCTCCATCGAGCTGGGGATGTGCCTCAGGGTACACACAGGGTAGGGAGCATCGTACATACAGCTGCCTaGAGTATAACTCTTCATCCA +
Preference number: 4 (lower is better)
Translates to: VLHRAGDVPQGTHRVGSIVHTAA*SITLHP
Trigger: TGGATGAAGAGTTATACTCCAGGCAGCTGTATGTAC...GATGCTCCCTACCCTGTGTGTACCCTGAGGCACATCCCCAGCTCGATGGAGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
CDS-3UTR CCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGGCCCAGCAGGTGGGATaGGGATCATGCAGGGTGAGG +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWAQQVG*GSCRVR
Trigger: CCTCACCCTGCATGATCCCCATCCCACCTGCTGGGC...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035216.11
ENSMUST00000177392.8
CDS-3UTR CCA 90 bp ATCTCCACCTTCAGTCCATGTTCTTCCTGGAGATGGGCCAGCAGTGACTTCAGTGGTCCCACCTTCAGCTaGTCTTCCAGCTTGGAGTCA +
Preference number: 4 (lower is better)
Translates to: ISTFSPCSSWRWASSDFSGPTFS*SSSLES
Trigger: TGACTCCAAGCTGGAAGACCAGCTGAAGGTGGGACC...ACTGAAGTCACTGCTGGCCCATCTCCAGGAAGAACATGGACTGAAGGTGGAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR CAA 72 bp AGTTCCACCCTCAAGCACTTTATCATGGAAGCACAGTaGCCAGTGGCCAAGAGCCCACACCACACAGTCTTG +
Preference number: 4 (lower is better)
Translates to: SSTLKHFIMEAQ*PVAKSPHHTVL
Trigger: CAAGACTGTGTGGTGTGGGCTCTTGGCCACTGGCAACTGTGCTTCCATGATAAAGTGCTTGAGGGTGGAACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
3UTR CAA 72 bp CAAACACAGCAATTTGCCCATCGTATCGGCAGTTTCTaGGCTGACAATCCTCAGGGCTGGGAAGGAGCGTCT +
Preference number: 4 (lower is better)
Translates to: QTQQFAHRIGSF*ADNPQGWEGAS
Trigger: AGACGCTCCTTCCCAGCCCTGAGGATTGTCAGCCAAGAAACTGCCGATACGATGGGCAAATTGCTGTGTTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
CDS-3UTR TCA 90 bp GGTCAAACTGCAAGGGATGTGGACACTTGTTGGATCCTGATGAGAACTGAGTTCTGTCTCCTCTCAGGGTaGCAATGCCGGGGAAACCCT +
Preference number: 4 (lower is better)
Translates to: GQTARDVDTCWILMRTEFCLLSG*QCRGNP
Trigger: AGGGTTTCCCCGGCATTGTCACCCTGAGAGGAGACA...GAACTCAGTTCTCATCAGGATCCAACAAGTGTCCACATCCCTTGCAGTTTGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
CDS-3UTR TCA 90 bp GGTCAAACTGCAAGGGATGTGGACACTTGTTGGATCCTGATGAGAACTGAGTTCGCCTTTAGGACCTCCTaGGCAGCCACTCCTCCCATA +
Preference number: 4 (lower is better)
Translates to: GQTARDVDTCWILMRTEFAFRTS*AATPPI
Trigger: TATGGGAGGAGTGGCTGCTCAGGAGGTCCTAAAGGC...GAACTCAGTTCTCATCAGGATCCAACAAGTGTCCACATCCCTTGCAGTTTGACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
CDS-3UTR TCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGTCCCTGAGTGCAGGCTaGCTTTGTGAGCCAGGCAGC +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWSLSAG*LCEPGS
Trigger: GCTGCCTGGCTCACAAAGTCAGCCTGCACTCAGGGA...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR TCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGCAGCCGGTCACGTGCTaGACCAGTTCTGTCACCCTG +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWQPVTC*TSSVTL
Trigger: CAGGGTGACAGAACTGGTTCAGCACGTGACCGGCTG...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR CCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGGCCGGCCTCCAGCAGTaGCTTCAGATAGTGGGTGCA +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWAGLQQ*LQIVGA
Trigger: TGCACCCACTATCTGAAGCCACTGCTGGAGGCCGGC...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR TCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGATGCCGGGGAAACCCTaGGAGATGTCCTGGATGGCA +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWMPGKP*EMSWMA
Trigger: TGCCATCCAGGACATCTCTCAGGGTTTCCCCGGCAT...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035216.11
ENSMUST00000177392.8
CDS-3UTR TCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGTGTCTCCTCTCAGGGTaGCAATGCCGGGGAAACCCT +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWCLLSG*QCRGNP
Trigger: AGGGTTTCCCCGGCATTGTCACCCTGAGAGGAGACA...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035216.11
ENSMUST00000177392.8
CDS-3UTR TCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGGCCTTTAGGACCTCCTaGGCAGCCACTCCTCCCATA +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWAFRTS*AATPPI
Trigger: TATGGGAGGAGTGGCTGCTCAGGAGGTCCTAAAGGC...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035216.11
ENSMUST00000177392.8
CDS-3UTR TCA 90 bp CTTGGGCCTGAAGAGGAACTGCCTGCTGAGGTTGGAGCGTTCTATGTAATCCATTCAAAGTACAGCCACTaGTCCAGGGGCATGAACTTC +
Preference number: 4 (lower is better)
Translates to: LGPEEELPAEVGAFYVIHSKYSH*SRGMNF
Trigger: GAAGTTCATGCCCCTGGATCAGTGGCTGTACTTTGA...ATGGATTACATAGAACGCTCCAACCTCAGCAGGCAGTTCCTCTTCAGGCCCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
CDS-3UTR TCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGTGGGGCAGAAGGCGCTaGGCGGATGAAGTGGTTTTC +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWWGRRR*ADEVVF
Trigger: GAAAACCACTTCATCCGCTCAGCGCCTTCTGCCCCA...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR GCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGGCTTCCTGGATCCTCTaGATAGCAGGCAGGCCCAGT +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWASWIL*IAGRPS
Trigger: ACTGGGCCTGCCTGCTATGCAGAGGATCCAGGAAGC...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035216.11
ENSMUST00000177392.8
CDS-3UTR GCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGGGCCTGAAGAGGAACTaGCTGCTGAGGTTGGAGCGT +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWGLKRN*LLRLER
Trigger: ACGCTCCAACCTCAGCAGGCAGTTCCTCTTCAGGCC...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR GCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGATCGAGCTGGGGATGTaGCTCAGGGTACACACAGGG +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWIELGM*LRVHTG
Trigger: CCCTGTGTGTACCCTGAGGCACATCCCCAGCTCGAT...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR GCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGCAGCCCATGCATCCGTaGATACAGGTTGGCAGCTGC +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWQPMHP*IQVGSC
Trigger: GCAGCTGCCAACCTGTATGCACGGATGCATGGGCTG...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR GCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGGAGCCAGGCAGCCCATaGATCCGTGCATACAGGTTG +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWEPGSP*IRAYRL
Trigger: CAACCTGTATGCACGGATGCATGGGCTGCCTGGCTC...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR TCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGGTCAGCACCACTACCTaGAAACCCTGCAGTAGGTCC +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWVSTTT*KPCSRS
Trigger: GGACCTACTGCAGGGTTTTCAGGTAGTGGTGCTGAC...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035216.11
ENSMUST00000177039.8
ENSMUST00000177392.8
CDS-3UTR TCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGTTGGGTAGCCGGCCATaGAGTTGCTGGAACTTGTGC +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWLGSRP*SCWNLC
Trigger: GCACAAGTTCCAGCAACTTCATGGCCGGCTACCCAA...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035216.11
ENSMUST00000177392.8
CDS-3UTR TCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGAAGAGTCCCTCAAATTaGTCCTGGGCCCACTGCACG +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWKSPSN*SWAHCT
Trigger: CGTGCAGTGGGCCCAGGATCAATTTGAGGGACTCTT...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR TCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGAAGGCGCTGAGCGGATaGAGTGGTTTTCAGCCAGGT +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWKALSG*SGFQPG
Trigger: ACCTGGCTGAAAACCACTTCATCCGCTCAGCGCCTT...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR GCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGTCAGCTCCCAGACCCTaGAGGCCACATAGCAAGACT +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWSAPRP*RPHSKT
Trigger: AGTCTTGCTATGTGGCCTGCAGGGTCTGGGAGCTGA...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035216.11
ENSMUST00000177392.8
CDS-3UTR GCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGAGCATCCTCAGAAGCTaGATCCGAGGCAGGACCTCT +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWSILRS*IRGRTS
Trigger: AGAGGTCCTGCCTCGGATGCAGCTTCTGAGGATGCT...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR GCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGCACACCACACAGTCTTaGCAGGTCTGTGGGCGAGTT +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWHTTQS*QVCGRV
Trigger: AACTCGCCCACAGACCTGGCAAGACTGTGTGGTGTG...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR GCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGTCATGGAAGCACAGTTaGCAGTGGCCAAGAGCCCAC +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWSWKHS*QWPRAH
Trigger: GTGGGCTCTTGGCCACTGGCAACTGTGCTTCCATGA...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR CCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGGGTCCCACCTTCAGCTaGTCTTCCAGCTTGGAGTCA +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWGPTFS*SSSLES
Trigger: TGACTCCAAGCTGGAAGACCAGCTGAAGGTGGGACC...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035216.11
ENSMUST00000177039.8
ENSMUST00000177392.8
CDS-3UTR CCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGGCATCTCACAGCCAATaGCACCAGCACCCACCAAGA +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWASHSQ*HQHPPR
Trigger: TCTTGGTGGGTGCTGGTGCCATTGGCTGTGAGATGC...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR CCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGTGTGGTGGGATCCAGTaGGCAGGTATATGGAGTCGC +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWCGGIQ*AGIWSR
Trigger: GCGACTCCATATACCTGCCCACTGGATCCCACCACA...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR CCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGCGTAGATATCCTCTGTaGTGGGATCCAGTGGGCAGG +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWRRYPL*WDPVGR
Trigger: CCTGCCCACTGGATCCCACCACAGAGGATATCTACG...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR CCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGAAGCACAGTTGCCAGTaGCCAAGAGCCCACACCACA +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWKHSCQ*PRAHTT
Trigger: TGTGGTGTGGGCTCTTGGCCACTGGCAACTGTGCTT...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR CCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGAGAGGTTCTGGGGCCTaGAATCAGACTCTAGCAGCC +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWRGSGA*NQTLAA
Trigger: GGCTGCTAGAGTCTGATTCCAGGCCCCAGAACCTCT...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR CCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGACTGGTGGCAATGGCTaGGATAATCCGGCCCACGAT +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWTGGNG*DNPAHD
Trigger: ATCGTGGGCCGGATTATCCCAGCCATTGCCACCAGT...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR CCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGAGCAGAGCCTGGTGGTaGAGAAGCATCTCCACCTTC +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWSRAWW*RSISTF
Trigger: GAAGGTGGAGATGCTTCTCCACCACCAGGCTCTGCT...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR TCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGTCTGAAAGGAAACACTaGGCAGCCAAGTCAGCCCAG +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWSERKH*AAKSAQ
Trigger: CTGGGCTGACTTGGCTGCTCAGTGTTTCCTTTCAGA...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035216.11
ENSMUST00000177392.8
CDS-3UTR TCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGCTGAGGCACAGGTGTTaGGCCTGCTTTTCAGATGAC +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWLRHRC*ACFSDD
Trigger: GTCATCTGAAAAGCAGGCTCAACACCTGTGCCTCAG...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR GCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGTGGCCGACAGGGAAGTaGATGTCTGTTGGTAGCAGT +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWWPTGK*MSVGSS
Trigger: ACTGCTACCAACAGACATGCACTTCCCTGTCGGCCA...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR CCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGGCTGGTCTTCCAGCTTaGAGTCAGTCAGCACCACTA +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWAGLPA*SQSAPL
Trigger: TAGTGGTGCTGACTGACTCCAAGCTGGAAGACCAGC...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035216.11
ENSMUST00000177039.8
ENSMUST00000177392.8
CDS-3UTR CCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGGACAATCCTCAGGGCTaGGAAGGAGCGTCTCATCTT +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWDNPQG*EGASHL
Trigger: AAGATGAGACGCTCCTTCCCAGCCCTGAGGATTGTC...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035216.11
ENSMUST00000177392.8
CDS-3UTR CCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGTCCGTGCATACAGGTTaGCAGCTGCCAGTACGTAGA +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWSVHTG*QLPVRR
Trigger: TCTACGTACTGGCAGCTGCCAACCTGTATGCACGGA...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR CCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGGCTGAGCGGATGAAGTaGTTTTCAGCCAGGTGCAGA +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWAERMK*FSARCR
Trigger: TCTGCACCTGGCTGAAAACCACTTCATCCGCTCAGC...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR TCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGGAGAGCCTCATCCAGTaGCTCTTCTTCTGTCCCTTT +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWESLIQ*LFFCPF
Trigger: AAAGGGACAGAAGAAGAGTCACTGGATGAGGCTCTC...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035216.11
ENSMUST00000177392.8
CDS-3UTR TCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGTCAAAGTACAGCCACTaGTCCAGGGGCATGAACTTC +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWSKYSH*SRGMNF
Trigger: GAAGTTCATGCCCCTGGATCAGTGGCTGTACTTTGA...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035216.11
ENSMUST00000177392.8
CDS-3UTR TCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGGATCCTGATGAGAACTaGGTTCCACCCTCAAGCACT +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWDPDEN*VPPSST
Trigger: AGTGCTTGAGGGTGGAACTCAGTTCTCATCAGGATC...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR GCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGGCTTCAGATAGTGGGTaGATCGAGCAGCGACATAGT +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWASDSG*IEQRHS
Trigger: ACTATGTCGCTGCTCGATGCACCCACTATCTGAAGC...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR GCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGAACTGTTCCTGGCCATaGTCAGCAGAGAAGAGGTTC +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWNCSWP*SAEKRF
Trigger: GAACCTCTTCTCTGCTGAGCATGGCCAGGAACAGTT...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR GCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGTCGTCCAGGGTTTCCTaGAGTTCCTTCAACTGTTCC +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWSSRVS*SSFNCS
Trigger: GGAACAGTTGAAGGAACTGCAGGAAACCCTGGACGA...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR CCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGGAGAGATGTCCTGGATaGCAGCTGTCATGGGTTCTA +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWERCPG*QLSWVL
Trigger: TAGAACCCATGACAGCTGCCATCCAGGACATCTCTC...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035216.11
ENSMUST00000177392.8
CDS-3UTR CCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGGAGCGTCTCATCTTCTaGAAGACATTCAAGGGCGTC +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWERLIF*KTFKGV
Trigger: GACGCCCTTGAATGTCTTCCAGAAGATGAGACGCTC...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035216.11
ENSMUST00000177392.8
CDS-3UTR CCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGGTATCGGCAGTTTCTTaGCTGACAATCCTCAGGGCT +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWVSAVS*LTILRA
Trigger: AGCCCTGAGGATTGTCAGCCAAGAAACTGCCGATAC...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR CCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGAGATATCCTCTGTGGTaGGATCCAGTGGGCAGGTAT +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWRYPLW*DPVGRY
Trigger: ATACCTGCCCACTGGATCCCACCACAGAGGATATCT...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR CCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGTCCTTCAACTGTTCCTaGCCATGCTCAGCAGAGAAG +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWSFNCS*PCSAEK
Trigger: CTTCTCTGCTGAGCATGGCCAGGAACAGTTGAAGGA...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR CCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGTGTTCTTCCTGGAGATaGGCCAGCAGTGACTTCAGT +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWCSSWR*ASSDFS
Trigger: ACTGAAGTCACTGCTGGCCCATCTCCAGGAAGAACA...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR TCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGCATGCCTTCAATGTCTaGGAAAATCACCAAGTCCCC +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWHAFNV*ENHQVP
Trigger: GGGGACTTGGTGATTTTCTCAGACATTGAAGGCATG...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035216.11
ENSMUST00000177392.8
CDS-3UTR GCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGATACAGGTTGGCAGCTaGCAGTACGTAGAGGAAATG +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWIQVGS*QYVEEM
Trigger: CATTTCCTCTACGTACTGGCAGCTGCCAACCTGTAT...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR CCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGAGGAAATGCATGTCGTaGTTGGGGTCAAACTGCAAG +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWRKCMS*LGSNCK
Trigger: CTTGCAGTTTGACCCCAACCACGACATGCATTTCCT...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR CCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGCTCATAATGCAGAGGTaGGAAGGCCATTTCTTCCTC +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWLIMQR*EGHFFL
Trigger: GAGGAAGAAATGGCCTTCCCACCTCTGCATTATGAG...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR CCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGTCAAGCACTTTATCATaGAAGCACAGTTGCCAGTGG +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWSSTLS*KHSCQW
Trigger: CCACTGGCAACTGTGCTTCCATGATAAAGTGCTTGA...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR GCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGAGTCCACATGGAAGTTaGTGTCATCATCCTTCACAA +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWSPHGS*CHHPSQ
Trigger: TTGTGAAGGATGATGACAGCAACTTCCATGTGGACT...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR CCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGGTACATACAGCTGCCTaGAGTATAACTCTTCATCCA +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWVHTAA*SITLHP
Trigger: TGGATGAAGAGTTATACTCCAGGCAGCTGTATGTAC...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035216.11
ENSMUST00000177392.8
3UTR CAA 72 bp TCTTTCTGCACACGGACAGACTGTGGAGAACAACTGTaGAGTTCAACCATGCCTTCAATGTCTGAGAAAATC +
Preference number: 4 (lower is better)
Translates to: SFCTRTDCGEQL*SSTMPSMSEKI
Trigger: GATTTTCTCAGACATTGAAGGCATGGTTGAACTCAACAGTTGTTCTCCACAGTCTGTCCGTGTGCAGAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
3UTR CAA 72 bp CAGTTTCTCTTGAAGATCAGTTCCAAACACAGCAATTaGCCCATCGTATCGGCAGTTTCTTGGCTGACAATC +
Preference number: 4 (lower is better)
Translates to: QFLLKISSKHSN*PIVSAVSWLTI
Trigger: GATTGTCAGCCAAGAAACTGCCGATACGATGGGCAAATTGCTGTGTTTGGAACTGATCTTCAAGAGAAACTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
CDS-3UTR TCA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGTCACTCAGTTTCTCTTaGAGATCAGTTCCAAACACA +
Preference number: 4 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWSLSFS*RSVPNT
Trigger: TGTGTTTGGAACTGATCTTCAAGAGAAACTGAGTGA...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR CAA 90 bp AGACGATGGGCTGCTGCGGCGGCCACCTCTGCCTTGGGCCTTCTAACATCCTTGATTGAGCTGAGCCAATaGCGCCTGAGAGGCCTCAGC +
Preference number: 5 (lower is better)
Translates to: RRWAAAAATSALGLLTSLIELSQ*RLRGLS
Trigger: GCTGAGGCCTCTCAGGCGCAATTGGCTCAGCTCAAT...CAAGGATGTTAGAAGGCCCAAGGCAGAGGTGGCCGCCGCAGCAGCCCATCGTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
CDS-3UTR CAA 90 bp GTGGCCAAGAGCCCACACCACACAGTCTTGCCAGGTCTGTGGGCGAGTTCTCAGCACTACTCAGGGCAATaGTGCGGAGGAGAGCCTCAT +
Preference number: 5 (lower is better)
Translates to: VAKSPHHTVLPGLWASSQHYSGQ*CGGEPH
Trigger: ATGAGGCTCTCCTCCGCACAATTGCCCTGAGTAGTG...CTGAGAACTCGCCCACAGACCTGGCAAGACTGTGTGGTGTGGGCTCTTGGCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
CDS CCA 90 bp TCAGCTCCCAGACCCTGCAGGCCACATAGCAAGACTTTGGCTTCCTaGATCCTCTGCATAGCAGGCAGGCCCAGTACATACAGCTGCCTG +
Preference number: 5 (lower is better)
Translates to: SAPRPCRPHSKTLAS*ILCIAGRPSTYSCL
Trigger: CAGGCAGCTGTATGTACTGGGCCTGCCTGCTATGCAGAGGATCCAGGAAGCCAAAGTCTTGCTATGTGGCCTGCAGGGTCTGGGAGCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035216.11
ENSMUST00000177392.8
CDS-3UTR CAA 90 bp GGAGCCCGCTTACCACCTTATACAGCTCCAGGCCCAGTAAGCCTGCCACAACTGTTATGCCTCACGGTCTaGGGTCTCTTGACTTCGGTG +
Preference number: 5 (lower is better)
Translates to: GARLPPYTAPGPVSLPQLLCLTV*GLLTSV
Trigger: CACCGAAGTCAAGAGACCCAAGACCGTGAGGCATAA...CAGTTGTGGCAGGCTTACTGGGCCTGGAGCTGTATAAGGTGGTAAGCGGGCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
CDS-3UTR CAA 90 bp GCCTGGTGGTGGAGAAGCATCTCCACCTTCAGTCCATGTTCTTCCTGGAGATGGAGCTGGTCTTCCAGCTaGGAGTCAGTCAGCACCACT +
Preference number: 5 (lower is better)
Translates to: AWWWRSISTFSPCSSWRWSWSSS*ESVSTT
Trigger: AGTGGTGCTGACTGACTCCAAGCTGGAAGACCAGCT...CCATCTCCAGGAAGAACATGGACTGAAGGTGGAGATGCTTCTCCACCACCAGGC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177039.8
ENSMUST00000177392.8
CDS GCA 90 bp AGACCCTGCAGGCCACATAGCAAGACTTTGGCTTCCTGGATCCTCTaGATAGCAGGCAGGCCCAGTACATACAGCTGCCTGGAGTATAAC +
Preference number: 5 (lower is better)
Translates to: RPCRPHSKTLASWIL*IAGRPSTYSCLEYN
Trigger: GTTATACTCCAGGCAGCTGTATGTACTGGGCCTGCCTGCTATGCAGAGGATCCAGGAAGCCAAAGTCTTGCTATGTGGCCTGCAGGGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035216.11
ENSMUST00000177392.8
CDS GCA 90 bp ACACCTGTAAGGACTAGGTTCTTGGCCACCTCAGCTCCCAGACCCTaGAGGCCACATAGCAAGACTTTGGCTTCCTGGATCCTCTGCATA +
Preference number: 5 (lower is better)
Translates to: TPVRTRFLATSAPRP*RPHSKTLASWILCI
Trigger: TATGCAGAGGATCCAGGAAGCCAAAGTCTTGCTATGTGGCCTGCAGGGTCTGGGAGCTGAGGTGGCCAAGAACCTAGTCCTTACAGGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035216.11
ENSMUST00000177392.8
CDS-3UTR CAA 90 bp AGAGATGTCCTGGATGGCAGCTGTCATGGGTTCTACCTCAGTAGGGTCCAAAACATTGAGCTGAGCCAATaGCGCCTGAGAGGCCTCAGC +
Preference number: 5 (lower is better)
Translates to: RDVLDGSCHGFYLSRVQNIELSQ*RLRGLS
Trigger: GCTGAGGCCTCTCAGGCGCAATTGGCTCAGCTCAAT...GTTTTGGACCCTACTGAGGTAGAACCCATGACAGCTGCCATCCAGGACATCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177039.8
CDS-3UTR CAA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGACCTTCAGCCCAGGCTaGGGCTTCCAGCCGGTCACG +
Preference number: 5 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWTFSPG*GFQPVT
Trigger: CGTGACCGGCTGGAAGCCCAAGCCTGGGCTGAAGGT...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS CCA 90 bp CATGCTTGTGACACAAAGGTCCCACCTTCAGCTGGTCTTCCAGCTTaGAGTCAGTCAGCACCACTACCTGAAAACCCTGCAGTAGGTCCT +
Preference number: 5 (lower is better)
Translates to: HACDTKVPPSAGLPA*SQSAPLPENPAVGP
Trigger: AGGACCTACTGCAGGGTTTTCAGGTAGTGGTGCTGACTGACTCCAAGCTGGAAGACCAGCTGAAGGTGGGACCTTTGTGTCACAAGCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035216.11
ENSMUST00000177039.8
ENSMUST00000177392.8
CDS CCA 90 bp TTTTGGCTGACAATCCTCAGGGCTGGGAAGGAGCGTCTCATCTTCTaGAAGACATTCAAGGGCGTCAAAGTACAGCCACTGATCCAGGGG +
Preference number: 5 (lower is better)
Translates to: FWLTILRAGKERLIF*KTFKGVKVQPLIQG
Trigger: CCCCTGGATCAGTGGCTGTACTTTGACGCCCTTGAATGTCTTCCAGAAGATGAGACGCTCCTTCCCAGCCCTGAGGATTGTCAGCCAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
CDS-3UTR CAA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGGCTCGTAGGTCTGGGTaGAGACGATGGGCTGCTGCG +
Preference number: 5 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWARRSG*RRWAAA
Trigger: CGCAGCAGCCCATCGTCTCAACCCAGACCTACGAGC...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR CAA 90 bp AAGCTGCATCCGAGGCAGGACCTCTGTAGGCTTCTGTCACATAGGGCACAAACATGGAAGGAATGTCTTTaGGTGTCTCCTCTCAGGGTG +
Preference number: 5 (lower is better)
Translates to: KLHPRQDLCRLLSHRAQTWKECL*VSPLRV
Trigger: CACCCTGAGAGGAGACACCAAAAGACATTCCTTCCA...TGTTTGTGCCCTATGTGACAGAAGCCTACAGAGGTCCTGCCTCGGATGCAGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
CDS-3UTR CAA 90 bp TTCCTCCTCGCCCTCACAGCTCAGCTCAAACACCAGAACCTTCAGCCCAGGCTTTGTGGAGAACAACTGTaGAGTTCAACCATGCCTTCA +
Preference number: 5 (lower is better)
Translates to: FLLALTAQLKHQNLQPRLCGEQL*SSTMPS
Trigger: TGAAGGCATGGTTGAACTCAACAGTTGTTCTCCACA...AAGCCTGGGCTGAAGGTTCTGGTGTTTGAGCTGAGCTGTGAGGGCGAGGAGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
CDS-3UTR CAA 90 bp CCACACAGTCTTGCCAGGTCTGTGGGCGAGTTCTCAGGACACCCATCACTTGCTAGTAACGGGAGAAAGTaGTCGTATCTCCAATCTCCA +
Preference number: 5 (lower is better)
Translates to: PHSLARSVGEFSGHPSLASNGRK*SYLQSP
Trigger: TGGAGATTGGAGATACGACAACTTTCTCCCGTTACT...AGCAAGTGATGGGTGTCCTGAGAACTCGCCCACAGACCTGGCAAGACTGTGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
CDS-3UTR CAA 90 bp AGAGGAAATGCATGTCGTGGTTGGGGTCAAACTGCAAGGGATGTGGACACTTGTACGGTCTTGGGTCTCTaGACTTCGGTGACAACCCCA +
Preference number: 5 (lower is better)
Translates to: RGNACRGWGQTARDVDTCTVLGL*TSVTTP
Trigger: TGGGGTTGTCACCGAAGTCAAGAGACCCAAGACCGT...ACAAGTGTCCACATCCCTTGCAGTTTGACCCCAACCACGACATGCATTTCCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
CDS-3UTR CAA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGCCACACCACACAGTCTaGCCAGGTCTGTGGGCGAGT +
Preference number: 5 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWPHHTV*PGLWAS
Trigger: ACTCGCCCACAGACCTGGCAAGACTGTGTGGTGTGG...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS CCA 90 bp AATTTGCCCATCGTATCGGCAGTTTTGGCTGACAATCCTCAGGGCTaGGAAGGAGCGTCTCATCTTCTGGAAGACATTCAAGGGCGTCAA +
Preference number: 5 (lower is better)
Translates to: NLPIVSAVLADNPQG*EGASHLLEDIQGRQ
Trigger: TTGACGCCCTTGAATGTCTTCCAGAAGATGAGACGCTCCTTCCCAGCCCTGAGGATTGTCAGCCAAAACTGCCGATACGATGGGCAAATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8
CDS-3UTR CAA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGATTGAGCTGAGCCAATaGCGCCTGAGAGGCCTCAGC +
Preference number: 5 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWIELSQ*RLRGLS
Trigger: GCTGAGGCCTCTCAGGCGCAATTGGCTCAGCTCAAT...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035216.11
ENSMUST00000177039.8
ENSMUST00000177392.8
CDS-3UTR CAA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGAGCTGGTCTTCCAGCTaGGAGTCAGTCAGCACCACT +
Preference number: 5 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWSWSSS*ESVSTT
Trigger: AGTGGTGCTGACTGACTCCAAGCTGGAAGACCAGCT...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035216.11
ENSMUST00000177039.8
ENSMUST00000177392.8
CDS-3UTR CAA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGACGGTCTTGGGTCTCTaGACTTCGGTGACAACCCCA +
Preference number: 5 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWTVLGL*TSVTTP
Trigger: TGGGGTTGTCACCGAAGTCAAGAGACCCAAGACCGT...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035216.11
ENSMUST00000177392.8
CDS-3UTR CAA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGCACTACTCAGGGCAATaGTGCGGAGGAGAGCCTCAT +
Preference number: 5 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWHYSGQ*CGGEPH
Trigger: ATGAGGCTCTCCTCCGCACAATTGCCCTGAGTAGTG...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035216.11
ENSMUST00000177392.8
CDS-3UTR CAA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGGGCCTTCTAACATCCTaGGGCCTGAAGAGGAACTGC +
Preference number: 5 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWGLLTS*GLKRNC
Trigger: GCAGTTCCTCTTCAGGCCCAAGGATGTTAGAAGGCC...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR CAA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGGAAGAGTCCCTCAAATaGATCCTGGGCCCACTGCAC +
Preference number: 5 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWEESLK*ILGPLH
Trigger: GTGCAGTGGGCCCAGGATCAATTTGAGGGACTCTTC...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR CAA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGATCATGGAAGCACAGTaGCCAGTGGCCAAGAGCCCA +
Preference number: 5 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWIMEAQ*PVAKSP
Trigger: TGGGCTCTTGGCCACTGGCAACTGTGCTTCCATGAT...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR CAA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGTTATGCCTCACGGTCTaGGGTCTCTTGACTTCGGTG +
Preference number: 5 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWLCLTV*GLLTSV
Trigger: CACCGAAGTCAAGAGACCCAAGACCGTGAGGCATAA...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035216.11
ENSMUST00000177392.8
CDS-3UTR CAA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGTGGAAGGAATGTCTTTaGGTGTCTCCTCTCAGGGTG +
Preference number: 5 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWWKECL*VSPLRV
Trigger: CACCCTGAGAGGAGACACCAAAAGACATTCCTTCCA...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035216.11
ENSMUST00000177392.8
CDS-3UTR CAA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGGGAAGTGCATGTCTGTaGGTAGCAGTTGATGGTCTC +
Preference number: 5 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWGSACL*VAVDGL
Trigger: GAGACCATCAACTGCTACCAACAGACATGCACTTCC...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR CAA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGAAGGGATGTGGACACTaGTTGGATCCTGATGAGAAC +
Preference number: 5 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWKGCGH*LDPDEN
Trigger: GTTCTCATCAGGATCCAACAAGTGTCCACATCCCTT...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS-3UTR CAA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGTGTGGAGAACAACTGTaGAGTTCAACCATGCCTTCA +
Preference number: 5 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWCGEQL*SSTMPS
Trigger: TGAAGGCATGGTTGAACTCAACAGTTGTTCTCCACA...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035216.11
ENSMUST00000177392.8
CDS-3UTR CAA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGAGTAACGGGAGAAAGTaGTCGTATCTCCAATCTCCA +
Preference number: 5 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWSNGRK*SYLQSP
Trigger: TGGAGATTGGAGATACGACAACTTTCTCCCGTTACT...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035216.11
ENSMUST00000177392.8
CDS-3UTR CAA 90 bp GCTGAAGATGTAGGAATTTTATGCAGAGTTTGTTATGGCCAAGTGGTGGCGTGGGTCACTCAGTTTCTCTaGAAGATCAGTTCCAAACAC +
Preference number: 5 (lower is better)
Translates to: AEDVGILCRVCYGQVVAWVTQFL*KISSKH
Trigger: GTGTTTGGAACTGATCTTCAAGAGAAACTGAGTGAC...CCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035216.11
CDS CAA 72 bp AGGGTGAGGCTGCCCACACCTGTAAGGACTAGGTTCTaGGCCACCTCAGCTCCCAGACCCTGCAGGCCACAT +
Preference number: 6 (lower is better)
Translates to: RVRLPTPVRTRF*ATSAPRPCRPH
Trigger: ATGTGGCCTGCAGGGTCTGGGAGCTGAGGTGGCCAAGAACCTAGTCCTTACAGGTGTGGGCAGCCTCACCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035216.11
ENSMUST00000177392.8
CDS TCA 72 bp TGTCGCCACTGTGGACGGAGATCTGGACAGCTTCATTaGGCTGAGCCAATTGCGCCTGAGAGGCCTCAGCCC +
Preference number: 6 (lower is better)
Translates to: CRHCGRRSGQLH*AEPIAPERPQP
Trigger: GGGCTGAGGCCTCTCAGGCGCAATTGGCTCAGCTCAATGAAGCTGTCCAGATCTCCGTCCACAGTGGCGACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035216.11
ENSMUST00000177039.8
ENSMUST00000177392.8
CDS CAA 90 bp GGATCATGCAGGGTGAGGCTGCCCACACCTGTAAGGACTAGGTTCTaGGCCACCTCAGCTCCCAGACCCTGCAGGCCACATAGCAAGACT +
Preference number: 6 (lower is better)
Translates to: GSCRVRLPTPVRTRF*ATSAPRPCRPHSKT
Trigger: AGTCTTGCTATGTGGCCTGCAGGGTCTGGGAGCTGAGGTGGCCAAGAACCTAGTCCTTACAGGTGTGGGCAGCCTCACCCTGCATGATCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035216.11
ENSMUST00000177392.8
CDS GCA 72 bp AGGACTAGGTTCTTGGCCACCTCAGCTCCCAGACCCTaGAGGCCACATAGCAAGACTTTGGCTTCCTGGATC +
Preference number: 6 (lower is better)
Translates to: RTRFLATSAPRP*RPHSKTLASWI
Trigger: GATCCAGGAAGCCAAAGTCTTGCTATGTGGCCTGCAGGGTCTGGGAGCTGAGGTGGCCAAGAACCTAGTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035216.11
ENSMUST00000177392.8
CDS TCA 72 bp GCACCACTACCTGAAAACCCTGCAGTAGGTCCTCAGTaGTGTCGCCACTGTGGACGGAGATCTGGACAGCTT +
Preference number: 6 (lower is better)
Translates to: APLPENPAVGPQ*CRHCGRRSGQL
Trigger: AAGCTGTCCAGATCTCCGTCCACAGTGGCGACATCACTGAGGACCTACTGCAGGGTTTTCAGGTAGTGGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035216.11
ENSMUST00000177039.8
ENSMUST00000177392.8
CDS GCA 72 bp AGGCCACATAGCAAGACTTTGGCTTCCTGGATCCTCTaGATAGCAGGCAGGCCCAGTACATACAGCTGCCTG +
Preference number: 6 (lower is better)
Translates to: RPHSKTLASWIL*IAGRPSTYSCL
Trigger: CAGGCAGCTGTATGTACTGGGCCTGCCTGCTATGCAGAGGATCCAGGAAGCCAAAGTCTTGCTATGTGGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035216.11
ENSMUST00000177392.8
CDS CCA 72 bp GACACAAAGGTCCCACCTTCAGCTGGTCTTCCAGCTTaGAGTCAGTCAGCACCACTACCTGAAAACCCTGCA +
Preference number: 6 (lower is better)
Translates to: DTKVPPSAGLPA*SQSAPLPENPA
Trigger: TGCAGGGTTTTCAGGTAGTGGTGCTGACTGACTCCAAGCTGGAAGACCAGCTGAAGGTGGGACCTTTGTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035216.11
ENSMUST00000177039.8
ENSMUST00000177392.8
CDS CCA 72 bp CCAAACACAGCAATTTGCCCATCGTATCGGCAGTTTTaGCTGACAATCCTCAGGGCTGGGAAGGAGCGTCTC +
Preference number: 6 (lower is better)
Translates to: PNTAICPSYRQF*LTILRAGKERL
Trigger: GAGACGCTCCTTCCCAGCCCTGAGGATTGTCAGCCAAAACTGCCGATACGATGGGCAAATTGCTGTGTTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177392.8