Pregenerated sensors for UBA2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000052997Ensembl transcript IDs: ENSMUST00000102746.11, ENSMUST00000134856.9, ENSMUST00000152037.3, ENSMUST00000175991.8
Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGCACTTCTTGGTACTGGCAGCCTCATTCTCTTCCAGCTTCCGCTTaGGGGCCTTGTCGTCCCCGCTGCAGTCGGTGCTATTTGAAGGGC | + |
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Preference number: 1 (lower is better) Translates to: GTSWYWQPHSLPASA*GPCRPRCSRCYLKG Trigger: GCCCTTCAAATAGCACCGACTGCAGCGGGGACGACAAGGCCCGCAAGCGGAAGCTGGAAGAGAATGAGGCTGCCAGTACCAAGAAGTGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000152037.3 |
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| 3UTR TCA 90 bp | GGTTCCGACCAGACCAAGGGCAGGAGCCTGCTCAGTCTAACGCTATaGCGTCATCTGGATCTTCCATCTGCTCCAAGCGGCACTTCTTGG | + |
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Preference number: 1 (lower is better) Translates to: GSDQTKGRSLLSLTL*RHLDLPSAPSGTSW Trigger: CCAAGAAGTGCCGCTTGGAGCAGATGGAAGATCCAGATGACGTCATAGCGTTAGACTGAGCAGGCTCCTGCCCTTGGTCTGGTCGGAACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152037.3 |
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| 3UTR GCA 90 bp | CCTCATTCTCTTCCAGCTTCCGCTTGCGGGCCTTGTCGTCCCCGCTaGAGTCGGTGCTATTTGAAGGGCCTTCTTCGTCTGAATCAACTA | + |
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Preference number: 1 (lower is better) Translates to: PHSLPASACGPCRPR*SRCYLKGLLRLNQL Trigger: TAGTTGATTCAGACGAAGAAGGCCCTTCAAATAGCACCGACTGCAGCGGGGACGACAAGGCCCGCAAGCGGAAGCTGGAAGAGAATGAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152037.3 |
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| 3UTR GCA 90 bp | AAGGCAACATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTaGTCAAAGGGTTGCAAATTCTATTCCTACTTCAACACAGCAACA | + |
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Preference number: 1 (lower is better) Translates to: KATCTPAFFQLITQL*SKGCKFYSYFNTAT Trigger: TGTTGCTGTGTTGAAGTAGGAATAGAATTTGCAACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCATGTTGCCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102746.11 ENSMUST00000152037.3 |
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| 3UTR CAA 90 bp | CGGCACTTCTTGGTACTGGCAGCCTCATTCTCTTCCAGCTTCCGCTaGCGGGCCTTGTCGTCCCCGCTGCAGTCGGTGCTATTTGAAGGG | + |
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Preference number: 2 (lower is better) Translates to: RHFLVLAASFSSSFR*RALSSPLQSVLFEG Trigger: CCCTTCAAATAGCACCGACTGCAGCGGGGACGACAAGGCCCGCAAGCGGAAGCTGGAAGAGAATGAGGCTGCCAGTACCAAGAAGTGCCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152037.3 |
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| 3UTR CAA 90 bp | TTGGTACTGGCAGCCTCATTCTCTTCCAGCTTCCGCTTGCGGGCCTaGTCGTCCCCGCTGCAGTCGGTGCTATTTGAAGGGCCTTCTTCG | + |
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Preference number: 2 (lower is better) Translates to: LVLAASFSSSFRLRA*SSPLQSVLFEGPSS Trigger: CGAAGAAGGCCCTTCAAATAGCACCGACTGCAGCGGGGACGACAAGGCCCGCAAGCGGAAGCTGGAAGAGAATGAGGCTGCCAGTACCAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152037.3 |
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| 3UTR-3UTR TCA 90 bp | ATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAGGGTTGCAAATCATCTTGCTCTTGTaGACCGCCAGGGACTGCTCT | + |
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Preference number: 2 (lower is better) Translates to: MHARVLSAHHPALLKGLQIILLL*TARDCS Trigger: AGAGCAGTCCCTGGCGGTTCACAAGAGCAAGATGAT...TTGCAACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152037.3 |
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| 3UTR-3UTR GCA 90 bp | GATCTAACTTTTGGTTCCGACCAGACCAAGGGCAGGAGCCTGCTCAGTCTAACGATGAGCACATCATCTTaGTCTTGTGAACCGCCAGGG | + |
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Preference number: 2 (lower is better) Translates to: DLTFGSDQTKGRSLLSLTMSTSS*SCEPPG Trigger: CCCTGGCGGTTCACAAGAGCAAGATGATGTGCTCAT...CGTTAGACTGAGCAGGCTCCTGCCCTTGGTCTGGTCGGAACCAAAAGTTAGATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152037.3 |
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| 3UTR-3UTR TCA 90 bp | AACATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAGGGTTGAACAGTCTCAGCAAATaGACGCTGAACGGAACCATC | + |
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Preference number: 2 (lower is better) Translates to: NMHARVLSAHHPALLKGLNSLSK*TLNGTI Trigger: GATGGTTCCGTTCAGCGTTCATTTGCTGAGACTGTT...CAACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCATGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102746.11 ENSMUST00000152037.3 |
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| 3UTR-3UTR TCA 90 bp | TGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAGGGTTGCAAAAACAGTCTCAGCAAATaGACGCTGAACGGAACCATC | + |
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Preference number: 2 (lower is better) Translates to: CTPAFFQLITQLCSKGCKNSLSK*TLNGTI Trigger: GATGGTTCCGTTCAGCGTTCATTTGCTGAGACTGTT...TTTGCAACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000102746.11 ENSMUST00000152037.3 |
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| 3UTR GCA 72 bp | TGGTACTGGCAGCCTCATTCTCTTCCAGCTTCCGCTTaGGGGCCTTGTCGTCCCCGCTGCAGTCGGTGCTAT | + |
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Preference number: 3 (lower is better) Translates to: WYWQPHSLPASA*GPCRPRCSRCY Trigger: ATAGCACCGACTGCAGCGGGGACGACAAGGCCCGCAAGCGGAAGCTGGAAGAGAATGAGGCTGCCAGTACCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000152037.3 |
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| 3UTR TCA 72 bp | CAGACCAAGGGCAGGAGCCTGCTCAGTCTAACGCTATaGCGTCATCTGGATCTTCCATCTGCTCCAAGCGGC | + |
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Preference number: 3 (lower is better) Translates to: QTKGRSLLSLTL*RHLDLPSAPSG Trigger: GCCGCTTGGAGCAGATGGAAGATCCAGATGACGTCATAGCGTTAGACTGAGCAGGCTCCTGCCCTTGGTCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152037.3 |
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| 3UTR GCA 72 bp | TCCGCTTGCGGGCCTTGTCGTCCCCGCTGCAGTCGGTaGTATTTGAAGGGCCTTCTTCGTCTGAATCAACTA | + |
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Preference number: 3 (lower is better) Translates to: SACGPCRPRCSR*YLKGLLRLNQL Trigger: TAGTTGATTCAGACGAAGAAGGCCCTTCAAATAGCACCGACTGCAGCGGGGACGACAAGGCCCGCAAGCGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152037.3 |
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| 3UTR-3UTR CAA 90 bp | ACAGGGAAGGCAACATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCGCTTTGCTCAAAGGGTaGCAAATTCTATTCCTACTT | + |
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Preference number: 3 (lower is better) Translates to: TGKATCTPAFFQLITQLCALLKG*QILFLL Trigger: AAGTAGGAATAGAATTTGCAACCCTTTGAGCAAAGC...GCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCATGTTGCCTTCCCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102746.11 ENSMUST00000152037.3 |
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| 3UTR CAA 72 bp | GCAGCCTCATTCTCTTCCAGCTTCCGCTTGCGGGCCTaGTCGTCCCCGCTGCAGTCGGTGCTATTTGAAGGG | + |
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Preference number: 4 (lower is better) Translates to: AASFSSSFRLRA*SSPLQSVLFEG Trigger: CCCTTCAAATAGCACCGACTGCAGCGGGGACGACAAGGCCCGCAAGCGGAAGCTGGAAGAGAATGAGGCTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152037.3 |
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| 3UTR CAA 72 bp | TTGGTACTGGCAGCCTCATTCTCTTCCAGCTTCCGCTaGCGGGCCTTGTCGTCCCCGCTGCAGTCGGTGCTA | + |
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Preference number: 4 (lower is better) Translates to: LVLAASFSSSFR*RALSSPLQSVL Trigger: TAGCACCGACTGCAGCGGGGACGACAAGGCCCGCAAGCGGAAGCTGGAAGAGAATGAGGCTGCCAGTACCAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152037.3 |
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| CDS-3UTR TCA 90 bp | ACAGGGAAGGCAACATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCAGGAAGTCGTCTGCTTaGAGCCGGCTGCCGTTTCTA | + |
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Preference number: 4 (lower is better) Translates to: TGKATCTPAFFQLITQLCRKSSA*SRLPFL Trigger: TAGAAACGGCAGCCGGCTTCAAGCAGACGACTTCCT...GCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCATGTTGCCTTCCCTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR CCA 90 bp | GGGAAGGCAACATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAGCTTCAGCCTCTGTTaGTTCCCAAGCAGCCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: GKATCTPAFFQLITQLCSSFSLC*FPSSLR Trigger: CCTGAGGCTGCTTGGGAACCAACAGAGGCTGAAGCT...TGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCATGTTGCCTTCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR TCA 90 bp | CATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAGGGTTGCAGCATTGGCTTCTCCTTaGCTCTGCACTTCAGCCCAG | + |
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Preference number: 4 (lower is better) Translates to: HARPRSFSSSPSFAQRVAALASP*LCTSAQ Trigger: CTGGGCTGAAGTGCAGAGTCAAGGAGAAGCCAATGC...TGCAACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR CCA 90 bp | GCTCAGTCTAACGCTATGACGTCATCTGGATCTTCCATCTGCTCCAAGCGGCACTCATCCCTGTGGAGGTaGAAGGCTGGGCACCGTCAT | + |
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Preference number: 4 (lower is better) Translates to: AQSNAMTSSGSSICSKRHSSLWR*KAGHRH Trigger: ATGACGGTGCCCAGCCTTCCACCTCCACAGGGATGA...GTGCCGCTTGGAGCAGATGGAAGATCCAGATGACGTCATAGCGTTAGACTGAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152037.3 |
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| CDS-3UTR GCA 90 bp | GGGAAGGCAACATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCACAGTCACCTCTGGCTTaGTGGCACAAACGTAACAGT | + |
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Preference number: 4 (lower is better) Translates to: GKATCTPAFFQLITQLCSQSPLA*WHKRNS Trigger: ACTGTTACGTTTGTGCCAGCAAGCCAGAGGTGACTG...TGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCATGTTGCCTTCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR CCA 90 bp | CATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAGGGTTGCAGCTTGGGGGTGGAACTaGAGCACACTTTCTTTGGCA | + |
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Preference number: 4 (lower is better) Translates to: HARPRSFSSSPSFAQRVAAWGWN*STLSLA Trigger: TGCCAAAGAAAGTGTGCTCCAGTTCCACCCCCAAGC...TGCAACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCATG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| 3UTR CAA 72 bp | TCATCTGGATCTTCCATCTGCTCCAAGCGGCACTTCTaGGTACTGGCAGCCTCATTCTCTTCCAGCTTCCGC | + |
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Preference number: 4 (lower is better) Translates to: SSGSSICSKRHF*VLAASFSSSFR Trigger: GCGGAAGCTGGAAGAGAATGAGGCTGCCAGTACCAAGAAGTGCCGCTTGGAGCAGATGGAAGATCCAGATGA 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152037.3 |
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| CDS-3UTR TCA 90 bp | CATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAGGGTTGCACTTTCTTTGGCAACCTaGGCCTTTGATCTTCCCACA | + |
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Preference number: 4 (lower is better) Translates to: HARPRSFSSSPSFAQRVALSLAT*AFDLPT Trigger: TGTGGGAAGATCAAAGGCTCAGGTTGCCAAAGAAAG...TGCAACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR TCA 90 bp | ACAGGGAAGGCAACATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCAGTCTCGATGCTCTTTaGAAACAGACTCGCATAGCT | + |
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Preference number: 4 (lower is better) Translates to: TGKATCTPAFFQLITQLCSLDAL*KQTRIA Trigger: AGCTATGCGAGTCTGTTTTCAAAGAGCATCGAGACT...GCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCATGTTGCCTTCCCTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR GCA 90 bp | GCAACATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAGGGTTCCGTCTTCATTAGATaGTCGAGCTCTAGCTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: ATCTPAFFQLITQLCSKGSVFIR*SSSSFS Trigger: GCTGAAGCTAGAGCTCGAGCATCTAATGAAGACGGA...ACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCATGTTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR GCA 90 bp | CATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAGGGTTGCACAAGCCGGCGATCACTaGATTAGTAGTAGCTATAGC | + |
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Preference number: 4 (lower is better) Translates to: HARPRSFSSSPSFAQRVAQAGDH*ISSSYS Trigger: GCTATAGCTACTACTAATGCAGTGATCGCCGGCTTG...TGCAACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR CCA 90 bp | CATCCCCCTTCTCCGCTAAATGGACTCGCAGAGTCTCGATGCTCTTTGAAAACAAGCTTCAGCCTCTGTTaGTTCCCAAGCAGCCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: HPPSPLNGLAESRCSLKTSFSLC*FPSSLR Trigger: CCTGAGGCTGCTTGGGAACCAACAGAGGCTGAAGCT...TGTTTTCAAAGAGCATCGAGACTCTGCGAGTCCATTTAGCGGAGAAGGGGGATG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000175991.8 |
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| CDS-3UTR CCA 90 bp | GGGAAGGCAACATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAAATCCATTGCAGGTaGGTCGTCCTTATCCCAGAT | + |
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Preference number: 4 (lower is better) Translates to: GKATCTPAFFQLITQLCSKIHCR*VVLIPD Trigger: ATCTGGGATAAGGACGACCCACCTGCAATGGATTTT...TGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCATGTTGCCTTCCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR CCA 90 bp | GCTATTTACAGGGAAGGCAACATGCACGCCCGCGTTCTTTCAGCTCATCACCCATCACCTCTGGCTTGCTaGCACAAACGTAACAGTTGG | + |
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Preference number: 4 (lower is better) Translates to: AIYREGNMHARVLSAHHPSPLAC*HKRNSW Trigger: CCAACTGTTACGTTTGTGCCAGCAAGCCAGAGGTGA...TGGGTGATGAGCTGAAAGAACGCGGGCGTGCATGTTGCCTTCCCTGTAAATAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR CCA 90 bp | ATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAGGGTTGCAAGGCACTTCTTGGTACTaGCAGCCTCATTCTCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: MHARVLSAHHPALLKGLQGTSWY*QPHSLP Trigger: TGGAAGAGAATGAGGCTGCCAGTACCAAGAAGTGCC...TTGCAACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR TCA 90 bp | AACATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAGGGTTGTATAGTCTGGGTTCATaGTGCTGTCATGGTGAGCCT | + |
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Preference number: 4 (lower is better) Translates to: NMHARVLSAHHPALLKGLYSLGS*CCHGEP Trigger: AGGCTCACCATGACAGCATCATGAACCCAGACTATA...CAACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCATGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR TCA 90 bp | GCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAGGGTTGCAAATTCAGGAGACACTTCTTaGTCAGCATCTTCCTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: ARPRSFSSSPSFAQRVANSGDTS*SASSSP Trigger: TGGAGAGGAAGATGCTGATCAAGAAGTGTCTCCTGA...ATTTGCAACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR GCA 90 bp | AACATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAGGGTTGCTCGCAGAGTCTCGATaGTCTTTGAAAACAGACTCG | + |
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Preference number: 4 (lower is better) Translates to: NMHARVLSAHHPALLKGLLAESR*SLKTDS Trigger: CGAGTCTGTTTTCAAAGAGCATCGAGACTCTGCGAG...CAACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCATGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR GCA 90 bp | ACAGGGAAGGCAACATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTGTAACAAAATCCATTaGAGGTGGGTCGTCCTTATC | + |
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Preference number: 4 (lower is better) Translates to: TGKATCTPAFFQLITQLCCNKIH*RWVVLI Trigger: GATAAGGACGACCCACCTGCAATGGATTTTGTTACA...GCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCATGTTGCCTTCCCTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR CCA 90 bp | ATTTACAGGGAAGGCAACATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTGGAGCACACTTTCTTTaGCAACCTGAGCCTTTGATC | + |
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Preference number: 4 (lower is better) Translates to: IYREGNMHARVLSAHHPAGAHFL*QPEPLI Trigger: GATCAAAGGCTCAGGTTGCCAAAGAAAGTGTGCTCC...AGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCATGTTGCCTTCCCTGTAAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR CCA 90 bp | TGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAGGGTTGCAAAACATCCAGAACCTGCTaGTCTTTCAAACCCAACTGG | + |
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Preference number: 4 (lower is better) Translates to: CTPAFFQLITQLCSKGCKTSRTC*SFKPNW Trigger: CCAGTTGGGTTTGAAAGACCAGCAGGTTCTGGATGT...TTTGCAACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR TCA 90 bp | TGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAGGGTTGCAAATCTTATCCTGTAAGGTaGGGACAGTCACTTTGTGGA | + |
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Preference number: 4 (lower is better) Translates to: CTPAFFQLITQLCSKGCKSYPVR*GQSLCG Trigger: TCCACAAAGTGACTGTCCTCACCTTACAGGATAAGA...TTTGCAACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR GCA 90 bp | CATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAGGGTTGCATTTACATCCAGAACCTaGTGGTCTTTCAAACCCAAC | + |
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Preference number: 4 (lower is better) Translates to: HARPRSFSSSPSFAQRVAFTSRT*WSFKPN Trigger: GTTGGGTTTGAAAGACCAGCAGGTTCTGGATGTAAA...TGCAACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR CCA 90 bp | GGGAAGGCAACATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAATCAGACAACTTCTTaGGGTTATTGGCTTCTGTCT | + |
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Preference number: 4 (lower is better) Translates to: GKATCTPAFFQLITQLCSNQTTS*GYWLLS Trigger: AGACAGAAGCCAATAACCCCAAGAAGTTGTCTGATT...TGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCATGTTGCCTTCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR TCA 90 bp | CCCTTCTCCGCTAAATGGACTCGCAGAGTCTCGATGCTCTTTGAAAACAGACTCTCAGGAGACACTTCTTaGTCAGCATCTTCCTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: PFSAKWTRRVSMLFENRLSGDTS*SASSSP Trigger: TGGAGAGGAAGATGCTGATCAAGAAGTGTCTCCTGA...GAGTCTGTTTTCAAAGAGCATCGAGACTCTGCGAGTCCATTTAGCGGAGAAGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000175991.8 |
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| CDS-3UTR GCA 90 bp | CATCCCCCTTCTCCGCTAAATGGACTCGCAGAGTCTCGATGCTCTTTGAAAACATCCGTCTTCATTAGATaGTCGAGCTCTAGCTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: HPPSPLNGLAESRCSLKTSVFIR*SSSSFS Trigger: GCTGAAGCTAGAGCTCGAGCATCTAATGAAGACGGA...TGTTTTCAAAGAGCATCGAGACTCTGCGAGTCCATTTAGCGGAGAAGGGGGATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000175991.8 |
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| CDS-3UTR TCA 90 bp | CATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAGGGTTGCAGATATTCCCTGCCATTaGTTTTATATCAAACCTGCT | + |
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Preference number: 4 (lower is better) Translates to: HARPRSFSSSPSFAQRVADIPCH*FYIKPA Trigger: AGCAGGTTTGATATAAAATCAATGGCAGGGAATATC...TGCAACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR TCA 90 bp | GCAACATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAGGGTCCAAGATCTTCACTATaGAGAATGTTGATCAGCAAA | + |
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Preference number: 4 (lower is better) Translates to: ATCTPAFFQLITQLCSKGPRSSL*RMLISK Trigger: TTTGCTGATCAACATTCTTCATAGTGAAGATCTTGG...ACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCATGTTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102746.11 ENSMUST00000152037.3 |
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| CDS-3UTR CCA 90 bp | GCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAGGGTTGCAAATTCTACACATCCTATTCACGTaGTTTCGTGCAGCTCTGTTA | + |
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Preference number: 4 (lower is better) Translates to: ARVLSAHHPALLKGLQILHILFT*FRAALL Trigger: TAACAGAGCTGCACGAAACCACGTGAATAGGATGTG...TAGAATTTGCAACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR CCA 90 bp | GCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAGGGTTGCAAATTCTATCCTCTCCAAACAGCTaGTTGAACAAATACTTGGCC | + |
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Preference number: 4 (lower is better) Translates to: ARVLSAHHPALLKGLQILSSPNS*LNKYLA Trigger: GGCCAAGTATTTGTTCAACCAGCTGTTTGGAGAGGA...TAGAATTTGCAACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR CCA 90 bp | CCCTTCTCCGCTAAATGGACTCGCAGAGTCTCGATGCTCTTTGAAAACAGACTCTCCTCTCCAAACAGCTaGTTGAACAAATACTTGGCC | + |
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Preference number: 4 (lower is better) Translates to: PFSAKWTRRVSMLFENRLSSPNS*LNKYLA Trigger: GGCCAAGTATTTGTTCAACCAGCTGTTTGGAGAGGA...GAGTCTGTTTTCAAAGAGCATCGAGACTCTGCGAGTCCATTTAGCGGAGAAGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000175991.8 |
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| 3UTR CAA 72 bp | ATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTaGCTCAAAGGGTTGCAAATTCTATTCCTACTTCAA | + |
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Preference number: 4 (lower is better) Translates to: MHARVLSAHHPA*LKGLQILFLLQ Trigger: TTGAAGTAGGAATAGAATTTGCAACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102746.11 ENSMUST00000152037.3 |
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| CDS-3UTR TCA 90 bp | ACATCATCTTGCTCTTGTGAACCGCCAGGGACTGCTCTGAGCACTGTGCACAAACCAAGATCTTCACTATaGAGAATGTTGATCAGCAAA | + |
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Preference number: 4 (lower is better) Translates to: TSSCSCEPPGTALSTVHKPRSSL*RMLISK Trigger: TTTGCTGATCAACATTCTTCATAGTGAAGATCTTGG...TTTGTGCACAGTGCTCAGAGCAGTCCCTGGCGGTTCACAAGAGCAAGATGATGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152037.3 |
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| CDS-3UTR CCA 90 bp | TCCCCCTTCTCCGCTAAATGGACTCGCAGAGTCTCGATGCTCTTTGAAAACAGATTTGTTGATCGGCATTaGCTTCTCCTTGGTAAAAAG | + |
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Preference number: 4 (lower is better) Translates to: SPFSAKWTRRVSMLFENRFVDRH*LLLGKK Trigger: CTTTTTACCAAGGAGAAGCCAATGCCGATCAACAAA...TCTGTTTTCAAAGAGCATCGAGACTCTGCGAGTCCATTTAGCGGAGAAGGGGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000175991.8 |
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| 3UTR CAA 72 bp | GTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAGGGTaGCAAATTCTATTCCTACTTCAACACAGCAACAGT | + |
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Preference number: 4 (lower is better) Translates to: VLSAHHPALLKG*QILFLLQHSNS Trigger: ACTGTTGCTGTGTTGAAGTAGGAATAGAATTTGCAACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102746.11 ENSMUST00000152037.3 |
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| CDS-3UTR CAA 90 bp | GCTATTTACAGGGAAGGCAACATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGTGAGCACCAGGTTCTaGAGCAGCTCACAGCCGATC | + |
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Preference number: 5 (lower is better) Translates to: AIYREGNMHARVLSAHHPVSTRF*SSSQPI Trigger: GATCGGCTGTGAGCTGCTCAAGAACCTGGTGCTCAC...TGGGTGATGAGCTGAAAGAACGCGGGCGTGCATGTTGCCTTCCCTGTAAATAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR CAA 90 bp | GGGAAGGCAACATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCATCAGTCACACCCTTCTaGATAGTGGTCACCTGTCCG | + |
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Preference number: 5 (lower is better) Translates to: GKATCTPAFFQLITQLCSSVTPF*IVVTCP Trigger: CGGACAGGTGACCACTATCAAGAAGGGTGTGACTGA...TGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCATGTTGCCTTCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR CAA 90 bp | ATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAGGGTTGCAAGAGGAAGTCGTCTGCTaGAAGCCGGCTGCCGTTTCT | + |
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Preference number: 5 (lower is better) Translates to: MHARVLSAHHPALLKGLQEEVVC*KPAAVS Trigger: AGAAACGGCAGCCGGCTTCAAGCAGACGACTTCCTC...TTGCAACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR CAA 90 bp | ATTTACAGGGAAGGCAACATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTGGCATTGGCTTCTCCTaGACTCTGCACTTCAGCCCA | + |
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Preference number: 5 (lower is better) Translates to: IYREGNMHARVLSAHHPAGIGFS*TLHFSP Trigger: TGGGCTGAAGTGCAGAGTCAAGGAGAAGCCAATGCC...AGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCATGTTGCCTTCCCTGTAAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR CAA 90 bp | CATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAGGGTTGCAGTCAGGAGACACTTCTaGATCAGCATCTTCCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: HARPRSFSSSPSFAQRVAVRRHF*ISIFLS Trigger: GGAGAGGAAGATGCTGATCAAGAAGTGTCTCCTGAC...TGCAACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR CAA 90 bp | ATTTACAGGGAAGGCAACATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTCAACTGGGGCTCATTTaGTTGATCGGCATTGGCTTC | + |
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Preference number: 5 (lower is better) Translates to: IYREGNMHARVLSAHHPAQLGLI*LIGIGF Trigger: GAAGCCAATGCCGATCAACAAAATGAGCCCCAGTTG...AGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCATGTTGCCTTCCCTGTAAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR CAA 90 bp | ATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAGGGTTGCAATGGCAACCTGAGCCTTaGATCTTCCCACATGTTTCT | + |
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Preference number: 5 (lower is better) Translates to: MHARVLSAHHPALLKGLQWQPEP*IFPHVS Trigger: AGAAACATGTGGGAAGATCAAAGGCTCAGGTTGCCA...TTGCAACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR CAA 90 bp | CATCCCCCTTCTCCGCTAAATGGACTCGCAGAGTCTCGATGCTCTTTGAAAACATCAGTCACACCCTTCTaGATAGTGGTCACCTGTCCG | + |
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Preference number: 5 (lower is better) Translates to: HPPSPLNGLAESRCSLKTSVTPF*IVVTCP Trigger: CGGACAGGTGACCACTATCAAGAAGGGTGTGACTGA...TGTTTTCAAAGAGCATCGAGACTCTGCGAGTCCATTTAGCGGAGAAGGGGGATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000175991.8 |
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| CDS-3UTR CAA 90 bp | GCTATTTACAGGGAAGGCAACATGCACGCCCGCGTTCTTTCAGCTCATCACCCACTCTTGCGCCAGAGTTaGTCCATTGTCAGCAGATAT | + |
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Preference number: 5 (lower is better) Translates to: AIYREGNMHARVLSAHHPLLRQS*SIVSRY Trigger: ATATCTGCTGACAATGGACAAACTCTGGCGCAAGAG...TGGGTGATGAGCTGAAAGAACGCGGGCGTGCATGTTGCCTTCCCTGTAAATAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR CAA 90 bp | TGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAGGGTTGCAAAAACTTCTTGGGGTTATaGGCTTCTGTCTCTCCCTCT | + |
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Preference number: 5 (lower is better) Translates to: CTPAFFQLITQLCSKGCKNFLGL*ASVSPS Trigger: AGAGGGAGAGACAGAAGCCAATAACCCCAAGAAGTT...TTTGCAACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR CAA 90 bp | GGGAAGGCAACATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAATCAGACAACTTCTaGGGGTTATTGGCTTCTGTC | + |
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Preference number: 5 (lower is better) Translates to: GKATCTPAFFQLITQLCSKSDNF*GLLASV Trigger: GACAGAAGCCAATAACCCCAAGAAGTTGTCTGATTT...TGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCATGTTGCCTTCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS TCA 90 bp | CTGGTTGAACAAATACTTGGCCCATACGATGCAATGGATAGGTTCTaGAGGTGTGTTCCGAATCGTACAGCCAGGGAACGTCCTCTGGGT | + |
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Preference number: 5 (lower is better) Translates to: LVEQILGPYDAMDRF*RCVPNRTARERPLG Trigger: ACCCAGAGGACGTTCCCTGGCTGTACGATTCGGAACACACCTTCAGAACCTATCCATTGCATCGTATGGGCCAAGTATTTGTTCAACCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000102746.11 ENSMUST00000134856.9 ENSMUST00000175991.8 |
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| CDS-3UTR CAA 90 bp | GCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAGGGTTGCAAATAACAAGAACTGCCTGTaGAGGTTGCTGACATCGATA | + |
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Preference number: 5 (lower is better) Translates to: ARPRSFSSSPSFAQRVANNKNCL*RLLTSI Trigger: TATCGATGTCAGCAACCTCAACAGGCAGTTCTTGTT...ATTTGCAACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR CAA 90 bp | GCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAGGGTTGCAAATTGGTTGAACAAATACTaGGCCCATACGATGCAATGG | + |
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Preference number: 5 (lower is better) Translates to: ARPRSFSSSPSFAQRVANWLNKY*AHTMQW Trigger: CCATTGCATCGTATGGGCCAAGTATTTGTTCAACCA...ATTTGCAACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR CAA 90 bp | ATGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAGGGTTGCAATCTCCAAACAGCTGGTaGAACAAATACTTGGCCCAT | + |
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Preference number: 5 (lower is better) Translates to: MHARVLSAHHPALLKGLQSPNSW*NKYLAH Trigger: ATGGGCCAAGTATTTGTTCAACCAGCTGTTTGGAGA...TTGCAACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR CAA 90 bp | TGCACGCCCGCGTTCTTTCAGCTCATCACCCAGCTTTGCTCAAAGGGTTGCAAACCAAGAGCTTCTTTCTaGGGTTTGGCTGCTTATTCA | + |
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Preference number: 5 (lower is better) Translates to: CTPAFFQLITQLCSKGCKPRASF*GLAAYS Trigger: TGAATAAGCAGCCAAACCCAAGAAAGAAGCTCTTGG...TTTGCAACCCTTTGAGCAAAGCTGGGTGATGAGCTGAAAGAACGCGGGCGTGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102746.11 |
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| CDS-3UTR CAA 90 bp | TCCCCCTTCTCCGCTAAATGGACTCGCAGAGTCTCGATGCTCTTTGAAAACAGATGGTTGAACAAATACTaGGCCCATACGATGCAATGG | + |
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Preference number: 5 (lower is better) Translates to: SPFSAKWTRRVSMLFENRWLNKY*AHTMQW Trigger: CCATTGCATCGTATGGGCCAAGTATTTGTTCAACCA...TCTGTTTTCAAAGAGCATCGAGACTCTGCGAGTCCATTTAGCGGAGAAGGGGGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000175991.8 |
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| CDS-3UTR CAA 90 bp | TCCCCCTTCTCCGCTAAATGGACTCGCAGAGTCTCGATGCTCTTTGAAAACAGATCTCCAAACAGCTGGTaGAACAAATACTTGGCCCAT | + |
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Preference number: 5 (lower is better) Translates to: SPFSAKWTRRVSMLFENRSPNSW*NKYLAH Trigger: ATGGGCCAAGTATTTGTTCAACCAGCTGTTTGGAGA...TCTGTTTTCAAAGAGCATCGAGACTCTGCGAGTCCATTTAGCGGAGAAGGGGGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000175991.8 |
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| CDS-3UTR CAA 90 bp | CGATGCTCTTTGAAAACAGACTCGCATAGCTCTTTACATCCAGAACCTGCTGGTGTCAGGAGACACTTCTaGATCAGCATCTTCCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: RCSLKTDSHSSLHPEPAGVRRHF*ISIFLS Trigger: GGAGAGGAAGATGCTGATCAAGAAGTGTCTCCTGAC...ACCAGCAGGTTCTGGATGTAAAGAGCTATGCGAGTCTGTTTTCAAAGAGCATCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000175991.8 |
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| CDS-3UTR CAA 90 bp | AATGGACTCGCAGAGTCTCGATGCTCTTTGAAAACAGACTCGCATAGCTCTTTACAACTGGGGCTCATTTaGTTGATCGGCATTGGCTTC | + |
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Preference number: 5 (lower is better) Translates to: NGLAESRCSLKTDSHSSLQLGLI*LIGIGF Trigger: GAAGCCAATGCCGATCAACAAAATGAGCCCCAGTTG...TAAAGAGCTATGCGAGTCTGTTTTCAAAGAGCATCGAGACTCTGCGAGTCCATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000175991.8 |
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| CDS-3UTR CAA 90 bp | CCCTTCTCCGCTAAATGGACTCGCAGAGTCTCGATGCTCTTTGAAAACAGACTCGGCATTGGCTTCTCCTaGGTAAAAAGTTTAACTGGA | + |
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Preference number: 5 (lower is better) Translates to: PFSAKWTRRVSMLFENRLGIGFS*VKSLTG Trigger: TCCAGTTAAACTTTTTACCAAGGAGAAGCCAATGCC...GAGTCTGTTTTCAAAGAGCATCGAGACTCTGCGAGTCCATTTAGCGGAGAAGGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000175991.8 |
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| CDS TCA 72 bp | CAAATACTTGGCCCATACGATGCAATGGATAGGTTCTaGAGGTGTGTTCCGAATCGTACAGCCAGGGAACGT | + |
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Preference number: 6 (lower is better) Translates to: QILGPYDAMDRF*RCVPNRTARER Trigger: ACGTTCCCTGGCTGTACGATTCGGAACACACCTTCAGAACCTATCCATTGCATCGTATGGGCCAAGTATTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000102746.11 ENSMUST00000134856.9 ENSMUST00000175991.8 |
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