Pregenerated sensors for U2AF1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000061613

Ensembl transcript IDs: ENSMUST00000237323.2, ENSMUST00000238046.2

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR TCA 90 bp	CCTCCACCTCCACCACCGCGTCCACGGTCTCTGGATCGGGAACGCCGTTCCCTGGGCAGCAGGCTTCCCTaGAGTCAGTTACTGGGGACA	+
Preference number: 2 (lower is better) Translates to: PPPPPPRPRSLDRERRSLGSRLP*SQLLGT Trigger: TGTCCCCAGTAACTGACTTCAGGGAAGCCTGCTGCC...CAGGGAACGGCGTTCCCGATCCAGAGACCGTGGACGCGGTGGTGGAGGTGGAGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000237323.2 ENSMUST00000238046.2
3UTR-3UTR TCA 90 bp	CGTCCAGATCTCTCCCGGTCTCTTGACCGCCTCCTGTCACGCTCCCGTCCTCCGGGCAGCAGGCTTCCCTaGAGTCAGTTACTGGGGACA	+
Preference number: 2 (lower is better) Translates to: RPDLSRSLDRLLSRSRPPGSRLP*SQLLGT Trigger: TGTCCCCAGTAACTGACTTCAGGGAAGCCTGCTGCC...CGGAGGACGGGAGCGTGACAGGAGGCGGTCAAGAGACCGGGAGAGATCTGGACG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237323.2
3UTR-3UTR CCA 90 bp	GATCTCTCCCGGTCTCTTGACCGCCTCCTGTCACGCTCCCGTCCTCCGCCACCTCCCTGGATCGGGACCTaGATCTATGCTTCTTGCGCC	+
Preference number: 2 (lower is better) Translates to: DLSRSLDRLLSRSRPPPPPWIGT*IYASCA Trigger: GGCGCAAGAAGCATAGATCCAGGTCCCGATCCAGGG...AGGTGGCGGAGGACGGGAGCGTGACAGGAGGCGGTCAAGAGACCGGGAGAGATC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237323.2
3UTR-3UTR GCA 90 bp	CCTCCACCTCCACCACCGCGTCCACGGTCTCTGGATCGGGAACGCCGTTCCCTGGATCACGGCTTTCTCTaGATCCTCCTCACGTCGAAA	+
Preference number: 2 (lower is better) Translates to: PPPPPPRPRSLDRERRSLDHGFL*ILLTSK Trigger: TTTCGACGTGAGGAGGATGCAGAGAAAGCCGTGATC...CAGGGAACGGCGTTCCCGATCCAGAGACCGTGGACGCGGTGGTGGAGGTGGAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000237323.2 ENSMUST00000238046.2
3UTR-3UTR GCA 90 bp	CCTCCACCTCCACCACCGCGTCCACGGTCTCTGGATCGGGAACGCCGTTCCCTGAGAAGCCCCCTCTTGTaGACTCTCCCATTTCATACT	+
Preference number: 2 (lower is better) Translates to: PPPPPPRPRSLDRERRSLRSPLL*TLPFHT Trigger: AGTATGAAATGGGAGAGTGCACAAGAGGGGGCTTCT...CAGGGAACGGCGTTCCCGATCCAGAGACCGTGGACGCGGTGGTGGAGGTGGAGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000237323.2 ENSMUST00000238046.2
3UTR-3UTR CCA 90 bp	ATCTCTCCCGGTCTCTTGACCGCCTCCTGTCACGCTCCCGTCCTCCGCCACCTCCCTGAAGTCAGTTACTaGGGACAGCTCTGCATGGAT	+
Preference number: 2 (lower is better) Translates to: ISPGLLTASCHAPVLRHLPEVSY*GQLCMD Trigger: ATCCATGCAGAGCTGTCCCCAGTAACTGACTTCAGG...GAGGTGGCGGAGGACGGGAGCGTGACAGGAGGCGGTCAAGAGACCGGGAGAGAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237323.2
3UTR-3UTR TCA 90 bp	GATCTCTCCCGGTCTCTTGACCGCCTCCTGTCACGCTCCCGTCCTCCGCCACCTTCTCTTCCATCTCAGTaGAGACTTCCTCAAAGAACT	+
Preference number: 2 (lower is better) Translates to: DLSRSLDRLLSRSRPPPPSLPSQ*RLPQRT Trigger: AGTTCTTTGAGGAAGTCTTCACTGAGATGGAAGAGA...AGGTGGCGGAGGACGGGAGCGTGACAGGAGGCGGTCAAGAGACCGGGAGAGATC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237323.2
3UTR-3UTR CAA 90 bp	CCTCCACCTCCACCACCGCGTCCACGGTCTCTGGATCGGGAACGCCGTTCCCTGCTGGATCTATGCTTCTaGCGCCGGCGCCCATACAGC	+
Preference number: 3 (lower is better) Translates to: PPPPPPRPRSLDRERRSLLDLCF*RRRPYS Trigger: GCTGTATGGGCGCCGGCGCAAGAAGCATAGATCCAG...CAGGGAACGGCGTTCCCGATCCAGAGACCGTGGACGCGGTGGTGGAGGTGGAGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000237323.2 ENSMUST00000238046.2
3UTR-3UTR CAA 90 bp	CCTCCACCTCCACCACCGCGTCCACGGTCTCTGGATCGGGAACGCCGTTCCCTGTCCTCACGTCGAAACTaGACATACACGTTCCCCACC	+
Preference number: 3 (lower is better) Translates to: PPPPPPRPRSLDRERRSLSSRRN*TYTFPT Trigger: GGTGGGGAACGTGTATGTCAAGTTTCGACGTGAGGA...CAGGGAACGGCGTTCCCGATCCAGAGACCGTGGACGCGGTGGTGGAGGTGGAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000237323.2 ENSMUST00000238046.2
3UTR-3UTR CAA 90 bp	GATCTCTCCCGGTCTCTTGACCGCCTCCTGTCACGCTCCCGTCCTCCGCCACCTTCCTCACGTCGAAACTaGACATACACGTTCCCCACC	+
Preference number: 3 (lower is better) Translates to: DLSRSLDRLLSRSRPPPPSSRRN*TYTFPT Trigger: GGTGGGGAACGTGTATGTCAAGTTTCGACGTGAGGA...AGGTGGCGGAGGACGGGAGCGTGACAGGAGGCGGTCAAGAGACCGGGAGAGATC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237323.2
CDS-3UTR GCA 90 bp	CCTCCACCTCCACCACCGCGTCCACGGTCTCTGGATCGGGAACGCCGTTCCCTGAAGGTTGGTTTATTGTaGAACCGAGAACATCTGTCT	+
Preference number: 4 (lower is better) Translates to: PPPPPPRPRSLDRERRSLKVGLL*NREHLS Trigger: AGACAGATGTTCTCGGTTGCACAATAAACCAACCTT...CAGGGAACGGCGTTCCCGATCCAGAGACCGTGGACGCGGTGGTGGAGGTGGAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000237323.2 ENSMUST00000238046.2
CDS-3UTR GCA 90 bp	CGTCCAGATCTCTCCCGGTCTCTTGACCGCCTCCTGTCACGCTCCCGTCCTCCGAAGGTTGGTTTATTGTaGAACCGAGAACATCTGTCT	+
Preference number: 4 (lower is better) Translates to: RPDLSRSLDRLLSRSRPPKVGLL*NREHLS Trigger: AGACAGATGTTCTCGGTTGCACAATAAACCAACCTT...CGGAGGACGGGAGCGTGACAGGAGGCGGTCAAGAGACCGGGAGAGATCTGGACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237323.2
CDS-3UTR TCA 90 bp	GTACTTCTCTTCCATCTCAGTGAAGACTTCCTCAAAGAACTCATCATAGTGCTCAGGGCAATGGTAGTGTaGGCCGTCAGCCGTCTGTGC	+
Preference number: 4 (lower is better) Translates to: VLLFHLSEDFLKELIIVLRAMVV*AVSRLC Trigger: GCACAGACGGCTGACGGCTCACACTACCATTGCCCT...GAGCACTATGATGAGTTCTTTGAGGAAGTCTTCACTGAGATGGAAGAGAAGTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237323.2
CDS-3UTR CAA 90 bp	CCTCCACCTCCACCACCGCGTCCACGGTCTCTGGATCGGGAACGCCGTTCCCTGAATGAACAGTTGACTTaGTCTTTTTCGGTGCCGAAG	+
Preference number: 5 (lower is better) Translates to: PPPPPPRPRSLDRERRSLNEQLT*SFSVPK Trigger: CTTCGGCACCGAAAAAGACAAAGTCAACTGTTCATT...CAGGGAACGGCGTTCCCGATCCAGAGACCGTGGACGCGGTGGTGGAGGTGGAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000237323.2 ENSMUST00000238046.2
CDS-3UTR CAA 90 bp	GTACTTCTCTTCCATCTCAGTGAAGACTTCCTCAAAGAACTCATCATAGTGCTCAATGAACAGTTGACTTaGTCTTTTTCGGTGCCGAAG	+
Preference number: 5 (lower is better) Translates to: VLLFHLSEDFLKELIIVLNEQLT*SFSVPK Trigger: CTTCGGCACCGAAAAAGACAAAGTCAACTGTTCATT...GAGCACTATGATGAGTTCTTTGAGGAAGTCTTCACTGAGATGGAAGAGAAGTAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000237323.2 ENSMUST00000238046.2