Pregenerated sensors for TXNDC8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038709Ensembl transcript IDs: ENSMUST00000102897.11, ENSMUST00000139256.2, ENSMUST00000239406.2
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | GCTCGCAGGGCATGCAAGACACAGAGCATTAGCTCCTaGTTTAGGAAATGTCACAGGTATATTTGGGTGGCC | + |
|
Preference number: 3 (lower is better) Translates to: ARRACKTQSISS*FRKCHRYIWVA Trigger: GGCCACCCAAATATACCTGTGACATTTCCTAAAGCAGGAGCTAATGCTCTGTGTCTTGCATGCCCTGCGAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000102897.11 ENSMUST00000139256.2 ENSMUST00000239406.2 |
||
| CDS-3UTR TCA 90 bp | AGGGCATGCAAGACACAGAGCATTAGCTCCTGCTTTAGGAAATGTCACAGGTATGCCACACCACTTTGCTaGAAACTCTACCACCACAAG | + |
|
Preference number: 4 (lower is better) Translates to: RACKTQSISSCFRKCHRYATPLC*KLYHHK Trigger: CTTGTGGTGGTAGAGTTTTCAGCAAAGTGGTGTGGC...ATACCTGTGACATTTCCTAAAGCAGGAGCTAATGCTCTGTGTCTTGCATGCCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102897.11 ENSMUST00000239406.2 |
||
| CDS-3UTR CCA 90 bp | GCTCGCAGGGCATGCAAGACACAGAGCATTAGCTCCTGCTTTAGGAAATGTCACAATGGAGTGACCTTTTaGGTGTACTTGAACATCTGG | + |
|
Preference number: 4 (lower is better) Translates to: ARRACKTQSISSCFRKCHNGVTF*VYLNIW Trigger: CCAGATGTTCAAGTACACCCAAAAGGTCACTCCATT...GTGACATTTCCTAAAGCAGGAGCTAATGCTCTGTGTCTTGCATGCCCTGCGAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102897.11 ENSMUST00000239406.2 |
||
| CDS-3UTR TCA 90 bp | ACCAATAGAGAACAGCTCGCAGGGCATGCAAGACACAGAGCATTAGCTCCTGCTCCACCTGAGCAAACGTaGCATTTTGGTATTTTAAAG | + |
|
Preference number: 4 (lower is better) Translates to: TNREQLAGHARHRALAPAPPEQT*HFGILK Trigger: CTTTAAAATACCAAAATGTCACGTTTGCTCAGGTGG...AGCAGGAGCTAATGCTCTGTGTCTTGCATGCCCTGCGAGCTGTTCTCTATTGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102897.11 ENSMUST00000239406.2 |
||
| CDS-3UTR TCA 90 bp | GGAGAGACCAATAGAGAACAGCTCGCAGGGCATGCAAGACACAGAGCATTAGCTCCACCTGAGCAAACGTaGCATTTTGGTATTTTAAAG | + |
|
Preference number: 4 (lower is better) Translates to: GETNREQLAGHARHRALAPPEQT*HFGILK Trigger: CTTTAAAATACCAAAATGTCACGTTTGCTCAGGTGG...AGCTAATGCTCTGTGTCTTGCATGCCCTGCGAGCTGTTCTCTATTGGTCTCTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102897.11 ENSMUST00000239406.2 |
||
| CDS-3UTR TCA 90 bp | GCATGCAAGACACAGAGCATTAGCTCCTGCTTTAGGAAATGTCACAGGTATATTGCCACACCACTTTGCTaGAAACTCTACCACCACAAG | + |
|
Preference number: 4 (lower is better) Translates to: ACKTQSISSCFRKCHRYIATPLC*KLYHHK Trigger: CTTGTGGTGGTAGAGTTTTCAGCAAAGTGGTGTGGC...AATATACCTGTGACATTTCCTAAAGCAGGAGCTAATGCTCTGTGTCTTGCATGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102897.11 ENSMUST00000239406.2 |
||
| CDS-3UTR CCA 90 bp | GCAAGACACAGAGCATTAGCTCCTGCTTTAGGAAATGTCACAGGTATATTTGGGACCATGATTAACATCTaGGACTTGCTGCTGACCCTC | + |
|
Preference number: 4 (lower is better) Translates to: ARHRALAPALGNVTGIFGTMINI*DLLLTL Trigger: GAGGGTCAGCAGCAAGTCCCAGATGTTAATCATGGT...CCCAAATATACCTGTGACATTTCCTAAAGCAGGAGCTAATGCTCTGTGTCTTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239406.2 |
||
| CDS-3UTR CCA 90 bp | ACCAATAGAGAACAGCTCGCAGGGCATGCAAGACACAGAGCATTAGCTCCTGCTTTTAAAGACATTGCCTaGAAAACAGGAGCAATTGTT | + |
|
Preference number: 4 (lower is better) Translates to: TNREQLAGHARHRALAPAFKDIA*KTGAIV Trigger: AACAATTGCTCCTGTTTTCCAGGCAATGTCTTTAAA...AGCAGGAGCTAATGCTCTGTGTCTTGCATGCCCTGCGAGCTGTTCTCTATTGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102897.11 ENSMUST00000239406.2 |
||
| CDS-3UTR CCA 90 bp | AGGGCATGCAAGACACAGAGCATTAGCTCCTGCTTTAGGAAATGTCACAGGTATAATGGAGTGACCTTTTaGGTGTACTTGAACATCTGG | + |
|
Preference number: 4 (lower is better) Translates to: RACKTQSISSCFRKCHRYNGVTF*VYLNIW Trigger: CCAGATGTTCAAGTACACCCAAAAGGTCACTCCATT...ATACCTGTGACATTTCCTAAAGCAGGAGCTAATGCTCTGTGTCTTGCATGCCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102897.11 ENSMUST00000239406.2 |
||
| CDS-3UTR CCA 90 bp | ACCAATAGAGAACAGCTCGCAGGGCATGCAAGACACAGAGCATTAGCTCCTGCTCATTCAAAAATCTTTTaGGTGTACTTGAACATCTGG | + |
|
Preference number: 4 (lower is better) Translates to: TNREQLAGHARHRALAPAHSKIF*VYLNIW Trigger: CCAGATGTTCAAGTACACCCAAAAGATTTTTGAATG...AGCAGGAGCTAATGCTCTGTGTCTTGCATGCCCTGCGAGCTGTTCTCTATTGGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000139256.2 |
||
| CDS-3UTR CCA 90 bp | GGGCATGCAAGACACAGAGCATTAGCTCCTGCTTTAGGAAATGTCACAGGTATAGCAAACGTGACATTTTaGTATTTTAAAGACATTGCC | + |
|
Preference number: 4 (lower is better) Translates to: GHARHRALAPALGNVTGIANVTF*YFKDIA Trigger: GGCAATGTCTTTAAAATACCAAAATGTCACGTTTGC...TATACCTGTGACATTTCCTAAAGCAGGAGCTAATGCTCTGTGTCTTGCATGCCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102897.11 ENSMUST00000239406.2 |
||
| CDS-3UTR CCA 90 bp | GCATGCAAGACACAGAGCATTAGCTCCTGCTTTAGGAAATGTCACAGGTATATTGCAAACGTGACATTTTaGTATTTTAAAGACATTGCC | + |
|
Preference number: 4 (lower is better) Translates to: ACKTQSISSCFRKCHRYIANVTF*YFKDIA Trigger: GGCAATGTCTTTAAAATACCAAAATGTCACGTTTGC...AATATACCTGTGACATTTCCTAAAGCAGGAGCTAATGCTCTGTGTCTTGCATGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102897.11 ENSMUST00000239406.2 |
||
| CDS-3UTR CAA 90 bp | ACCAATAGAGAACAGCTCGCAGGGCATGCAAGACACAGAGCATTAGCTCCTGCTAGGGGCCACACCACTTaGCTGAAAACTCTACCACCA | + |
|
Preference number: 5 (lower is better) Translates to: TNREQLAGHARHRALAPARGHTT*LKTLPP Trigger: TGGTGGTAGAGTTTTCAGCAAAGTGGTGTGGCCCCT...AGCAGGAGCTAATGCTCTGTGTCTTGCATGCCCTGCGAGCTGTTCTCTATTGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102897.11 ENSMUST00000239406.2 |
||
| CDS-3UTR CAA 90 bp | GAGACCAATAGAGAACAGCTCGCAGGGCATGCAAGACACAGAGCATTAGCTCCTATTAACATCTGGGACTaGCTGCTGACCCTCTCCTGT | + |
|
Preference number: 5 (lower is better) Translates to: ETNREQLAGHARHRALAPINIWD*LLTLSC Trigger: ACAGGAGAGGGTCAGCAGCAAGTCCCAGATGTTAAT...AGGAGCTAATGCTCTGTGTCTTGCATGCCCTGCGAGCTGTTCTCTATTGGTCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239406.2 |
||
| CDS-3UTR CAA 90 bp | AGACACAGAGCATTAGCTCCTGCTTTAGGAAATGTCACAGGTATATTTGGGTGGGCTGACCCTCTCCTGTaGGTTCAGGTGGAGGATCAC | + |
|
Preference number: 5 (lower is better) Translates to: RHRALAPALGNVTGIFGWADPLL*VQVEDH Trigger: GTGATCCTCCACCTGAACCAACAGGAGAGGGTCAGC...CCACCCAAATATACCTGTGACATTTCCTAAAGCAGGAGCTAATGCTCTGTGTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239406.2 |
||
| CDS-3UTR CAA 90 bp | AGGGCATGCAAGACACAGAGCATTAGCTCCTGCTTTAGGAAATGTCACAGGTATAGGGGCCACACCACTTaGCTGAAAACTCTACCACCA | + |
|
Preference number: 5 (lower is better) Translates to: RACKTQSISSCFRKCHRYRGHTT*LKTLPP Trigger: TGGTGGTAGAGTTTTCAGCAAAGTGGTGTGGCCCCT...ATACCTGTGACATTTCCTAAAGCAGGAGCTAATGCTCTGTGTCTTGCATGCCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102897.11 ENSMUST00000239406.2 |
||
| CDS-3UTR CAA 90 bp | ACAGCTCGCAGGGCATGCAAGACACAGAGCATTAGCTCCTGCTTTAGGAAATGTCAGCACAGTACTCTTTaGAGTCTTGAGAATGGAGTG | + |
|
Preference number: 5 (lower is better) Translates to: TARRACKTQSISSCFRKCQHSTL*SLENGV Trigger: CACTCCATTCTCAAGACTCAAAAGAGTACTGTGCTG...ACATTTCCTAAAGCAGGAGCTAATGCTCTGTGTCTTGCATGCCCTGCGAGCTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102897.11 ENSMUST00000239406.2 |
||
| CDS CCA 90 bp | TTCAGTTCACTCATGTTCTTAATCCTCTTCACCATGATTAACATCTaGGACTTGCTGCTGACCCTCTCCTGTTGGTTCAGGTGGAGGATC | + |
|
Preference number: 5 (lower is better) Translates to: FSSLMFLILFTMINI*DLLLTLSCWFRWRI Trigger: GATCCTCCACCTGAACCAACAGGAGAGGGTCAGCAGCAAGTCCCAGATGTTAATCATGGTGAAGAGGATTAAGAACATGAGTGAACTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239406.2 |
||
| CDS-3UTR CAA 90 bp | GCTCGCAGGGCATGCAAGACACAGAGCATTAGCTCCTGCTTTAGGAAATGTCACGGTATTTTAAAGACATaGCCTGGAAAACAGGAGCAA | + |
|
Preference number: 5 (lower is better) Translates to: ARRACKTQSISSCFRKCHGILKT*PGKQEQ Trigger: TTGCTCCTGTTTTCCAGGCAATGTCTTTAAAATACC...GTGACATTTCCTAAAGCAGGAGCTAATGCTCTGTGTCTTGCATGCCCTGCGAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102897.11 ENSMUST00000239406.2 |
||
| CDS-3UTR CAA 90 bp | ACCAATAGAGAACAGCTCGCAGGGCATGCAAGACACAGAGCATTAGCTCCTGCTGGTATTTTAAAGACATaGCCTGGAAAACAGGAGCAA | + |
|
Preference number: 5 (lower is better) Translates to: TNREQLAGHARHRALAPAGILKT*PGKQEQ Trigger: TTGCTCCTGTTTTCCAGGCAATGTCTTTAAAATACC...AGCAGGAGCTAATGCTCTGTGTCTTGCATGCCCTGCGAGCTGTTCTCTATTGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102897.11 ENSMUST00000239406.2 |
||
| CDS-3UTR CAA 90 bp | ACAGCTCGCAGGGCATGCAAGACACAGAGCATTAGCTCCTGCTTTAGGAAATGTCATTCAAAAATCATCTaGCTCTTCGGTCCACTTCTG | + |
|
Preference number: 5 (lower is better) Translates to: TARRACKTQSISSCFRKCHSKII*LFGPLL Trigger: CAGAAGTGGACCGAAGAGCAAGATGATTTTTGAATG...ACATTTCCTAAAGCAGGAGCTAATGCTCTGTGTCTTGCATGCCCTGCGAGCTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000102897.11 ENSMUST00000239406.2 |
||
| CDS-3UTR CAA 90 bp | CGCAGGGCATGCAAGACACAGAGCATTAGCTCCTGCTTTAGGAAATGTCACAGGAATCTTCTTTTCCAGTaGTTTAGCATCAGCTCCATG | + |
|
Preference number: 5 (lower is better) Translates to: RRACKTQSISSCFRKCHRNLLFQ*FSISSM Trigger: CATGGAGCTGATGCTAAACAACTGGAAAAGAAGATT...CCTGTGACATTTCCTAAAGCAGGAGCTAATGCTCTGTGTCTTGCATGCCCTGCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102897.11 ENSMUST00000139256.2 ENSMUST00000239406.2 |
||
| CDS-3UTR CAA 90 bp | GAGACCAATAGAGAACAGCTCGCAGGGCATGCAAGACACAGAGCATTAGCTCCTAATCTTCTTTTCCAGTaGTTTAGCATCAGCTCCATG | + |
|
Preference number: 5 (lower is better) Translates to: ETNREQLAGHARHRALAPNLLFQ*FSISSM Trigger: CATGGAGCTGATGCTAAACAACTGGAAAAGAAGATT...AGGAGCTAATGCTCTGTGTCTTGCATGCCCTGCGAGCTGTTCTCTATTGGTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102897.11 ENSMUST00000139256.2 ENSMUST00000239406.2 |
||
| CDS CCA 90 bp | AGGCAGCACAGTACTCTTTTGAGTCTTGAGAATGGAGTGACCTTTTaGGTGTACTTGAACATCTGGAATGTGGGTAGCATTGTGATGTCA | + |
|
Preference number: 5 (lower is better) Translates to: RQHSTLLSLENGVTF*VYLNIWNVGSIVMS Trigger: TGACATCACAATGCTACCCACATTCCAGATGTTCAAGTACACCCAAAAGGTCACTCCATTCTCAAGACTCAAAAGAGTACTGTGCTGCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102897.11 ENSMUST00000239406.2 |
||
| CDS-3UTR CAA 90 bp | GGGCATGCAAGACACAGAGCATTAGCTCCTGCTTTAGGAAATGTCACAGGTATAAATCTTCTTTTCCAGTaGTTTAGCATCAGCTCCATG | + |
|
Preference number: 5 (lower is better) Translates to: GHARHRALAPALGNVTGINLLFQ*FSISSM Trigger: CATGGAGCTGATGCTAAACAACTGGAAAAGAAGATT...TATACCTGTGACATTTCCTAAAGCAGGAGCTAATGCTCTGTGTCTTGCATGCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102897.11 ENSMUST00000139256.2 ENSMUST00000239406.2 |
||
| CDS CCA 72 bp | ATTAACATCTGGGACTTGCTGCTGACCCTCTCCTGTTaGTTCAGGTGGAGGATCACCGTAGCTGTCCCATTC | + |
|
Preference number: 6 (lower is better) Translates to: INIWDLLLTLSC*FRWRITVAVPF Trigger: GAATGGGACAGCTACGGTGATCCTCCACCTGAACCAACAGGAGAGGGTCAGCAGCAAGTCCCAGATGTTAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239406.2 |
||
| CDS TCA 72 bp | AGGAGCAATTGTTTTGCAGGGGCCACACCACTTTGCTaGAAACTCTACCACCACAAGCTTGTTTCCAGCATC | + |
|
Preference number: 6 (lower is better) Translates to: RSNCFAGATPLC*KLYHHKLVSSI Trigger: GATGCTGGAAACAAGCTTGTGGTGGTAGAGTTTTCAGCAAAGTGGTGTGGCCCCTGCAAAACAATTGCTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102897.11 ENSMUST00000239406.2 |
||
| CDS CAA 72 bp | CTCTTCGGTCCACTTCTGAGGCAGCACAGTACTCTTTaGAGTCTTGAGAATGGAGTGACCTTTTGGGTGTAC | + |
|
Preference number: 6 (lower is better) Translates to: LFGPLLRQHSTL*SLENGVTFWVY Trigger: GTACACCCAAAAGGTCACTCCATTCTCAAGACTCAAAAGAGTACTGTGCTGCCTCAGAAGTGGACCGAAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102897.11 ENSMUST00000239406.2 |
||
| CDS CAA 90 bp | TCACTCATGTTCTTAATCCTCTTCACCATGATTAACATCTGGGACTaGCTGCTGACCCTCTCCTGTTGGTTCAGGTGGAGGATCACCGTA | + |
|
Preference number: 6 (lower is better) Translates to: SLMFLILFTMINIWD*LLTLSCWFRWRITV Trigger: TACGGTGATCCTCCACCTGAACCAACAGGAGAGGGTCAGCAGCAAGTCCCAGATGTTAATCATGGTGAAGAGGATTAAGAACATGAGTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239406.2 |
||
| CDS CAA 90 bp | TTGCAGGGGCCACACCACTTTGCTGAAAACTCTACCACCACAAGCTaGTTTCCAGCATCGCTGAACAATTCTTTCAGTTCACTCATGTTC | + |
|
Preference number: 6 (lower is better) Translates to: LQGPHHFAENSTTTS*FPASLNNSFSSLMF Trigger: GAACATGAGTGAACTGAAAGAATTGTTCAGCGATGCTGGAAACAAGCTTGTGGTGGTAGAGTTTTCAGCAAAGTGGTGTGGCCCCTGCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102897.11 ENSMUST00000239406.2 |
||
| CDS CCA 72 bp | CTCATGTTCTTAATCCTCTTCACCATGATTAACATCTaGGACTTGCTGCTGACCCTCTCCTGTTGGTTCAGG | + |
|
Preference number: 6 (lower is better) Translates to: LMFLILFTMINI*DLLLTLSCWFR Trigger: CCTGAACCAACAGGAGAGGGTCAGCAGCAAGTCCCAGATGTTAATCATGGTGAAGAGGATTAAGAACATGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239406.2 |
||
| CDS CAA 72 bp | CCACACCACTTTGCTGAAAACTCTACCACCACAAGCTaGTTTCCAGCATCGCTGAACAATTCTTTCAGTTCA | + |
|
Preference number: 6 (lower is better) Translates to: PHHFAENSTTTS*FPASLNNSFSS Trigger: TGAACTGAAAGAATTGTTCAGCGATGCTGGAAACAAGCTTGTGGTGGTAGAGTTTTCAGCAAAGTGGTGTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102897.11 ENSMUST00000239406.2 |
||
| CDS CCA 72 bp | AGTACTCTTTTGAGTCTTGAGAATGGAGTGACCTTTTaGGTGTACTTGAACATCTGGAATGTGGGTAGCATT | + |
|
Preference number: 6 (lower is better) Translates to: STLLSLENGVTF*VYLNIWNVGSI Trigger: AATGCTACCCACATTCCAGATGTTCAAGTACACCCAAAAGGTCACTCCATTCTCAAGACTCAAAAGAGTACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102897.11 ENSMUST00000239406.2 |
||
| CDS CAA 90 bp | AGTACTCTTTTGAGTCTTGAGAATGGAGTGACCTTTTGGGTGTACTaGAACATCTGGAATGTGGGTAGCATTGTGATGTCACAATGTTCA | + |
|
Preference number: 6 (lower is better) Translates to: STLLSLENGVTFWVY*NIWNVGSIVMSQCS Trigger: TGAACATTGTGACATCACAATGCTACCCACATTCCAGATGTTCAAGTACACCCAAAAGGTCACTCCATTCTCAAGACTCAAAAGAGTACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102897.11 ENSMUST00000239406.2 |
||
| CDS TCA 72 bp | TGTTCAGCTAATTCCTTAGATGAGTCCACATCCACCTaGGCAAACGTGACATTTTGGTATTTTAAAGACATT | + |
|
Preference number: 6 (lower is better) Translates to: CSANSLDESTST*ANVTFWYFKDI Trigger: AATGTCTTTAAAATACCAAAATGTCACGTTTGCTCAGGTGGATGTGGACTCATCTAAGGAATTAGCTGAACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102897.11 ENSMUST00000239406.2 |
||