RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TXNDC17 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020803

Ensembl transcript IDs: ENSMUST00000021158.4

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTGGTTTTTCCAGACAGGGTTTTACTCTGTAGCTCTGGCTGTCCTTaGACTCAACTTGTAGACCAGGTAGCCTCAAACTCAAAGAGATCC +
Preference number: 1 (lower is better)
Translates to: LVFPDRVLLCSSGCP*TQLVDQVASNSKRS
Trigger: GGATCTCTTTGAGTTTGAGGCTACCTGGTCTACAAGTTGAGTTCAAGGACAGCCAGAGCTACAGAGTAAAACCCTGTCTGGAAAAACCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021158.4
3UTR-3UTR GCA 90 bp TTGAACTCAACTTGTAGACCAGGTAGCCTCAAACTCAAAGAGATCCAGCTGCCTGGGACTAAAGGCATGTaGCACCACAGTCCGGCAAGG +
Preference number: 2 (lower is better)
Translates to: LNSTCRPGSLKLKEIQLPGTKGM*HHSPAR
Trigger: CCTTGCCGGACTGTGGTGGCACATGCCTTTAGTCCC...AGGCAGCTGGATCTCTTTGAGTTTGAGGCTACCTGGTCTACAAGTTGAGTTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021158.4
3UTR-3UTR GCA 90 bp TGGTTTTTCCAGACAGGGTTTTACTCTGTAGCTCTGGCTGTCCTTGAACTCAACTCAAAGAGATCCAGCTaGCTCTGTCTCCCGAGTGCT +
Preference number: 2 (lower is better)
Translates to: WFFQTGFYSVALAVLELNSKRSS*LCLPSA
Trigger: AGCACTCGGGAGACAGAGGCAGCTGGATCTCTTTGA...GTTGAGTTCAAGGACAGCCAGAGCTACAGAGTAAAACCCTGTCTGGAAAAACCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021158.4
3UTR GCA 72 bp GTAGACCAGGTAGCCTCAAACTCAAAGAGATCCAGCTaGCTCTGTCTCCCGAGTGCTGGGACTAAAGGCATG +
Preference number: 3 (lower is better)
Translates to: VDQVASNSKRSS*LCLPSAGTKGM
Trigger: CATGCCTTTAGTCCCAGCACTCGGGAGACAGAGGCAGCTGGATCTCTTTGAGTTTGAGGCTACCTGGTCTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021158.4
CDS-3UTR TCA 90 bp ACTCAACTTGTAGACCAGGTAGCCTCAAACTCAAAGAGATCCAGCTGCCTCTGTTCAGCCCCTCTCGAATaGCTGGCTCAGCTTCCACGC +
Preference number: 4 (lower is better)
Translates to: TQLVDQVASNSKRSSCLCSAPLE*LAQLPR
Trigger: GCGTGGAAGCTGAGCCAGTCATTCGAGAGGGGCTGA...ACAGAGGCAGCTGGATCTCTTTGAGTTTGAGGCTACCTGGTCTACAAGTTGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021158.4
CDS-3UTR TCA 90 bp ACTCAACTTGTAGACCAGGTAGCCTCAAACTCAAAGAGATCCAGCTGCCTCTGTTCCACAAGGCTGGATTaGCAGCACTCAGACTCCACA +
Preference number: 4 (lower is better)
Translates to: TQLVDQVASNSKRSSCLCSTRLD*QHSDST
Trigger: TGTGGAGTCTGAGTGCTGTCAATCCAGCCTTGTGGA...ACAGAGGCAGCTGGATCTCTTTGAGTTTGAGGCTACCTGGTCTACAAGTTGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021158.4
CDS-3UTR GCA 90 bp TGGTTTTTCCAGACAGGGTTTTACTCTGTAGCTCTGGCTGTCCTTGAACTCAACATGGTCTTGCCCTCATaGTCCTTCACTGCCTTGTCG +
Preference number: 4 (lower is better)
Translates to: WFFQTGFYSVALAVLELNMVLPS*SFTALS
Trigger: CGACAAGGCAGTGAAGGAGCATGAGGGCAAGACCAT...GTTGAGTTCAAGGACAGCCAGAGCTACAGAGTAAAACCCTGTCTGGAAAAACCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021158.4
CDS-3UTR GCA 90 bp TTTTTCCAGACAGGGTTTTACTCTGTAGCTCTGGCTGTCCTTGAACTCAACTTGCAGTCTTCGGTAACATaGTTCAGCCCCTCTCGAATG +
Preference number: 4 (lower is better)
Translates to: FFQTGFYSVALAVLELNLQSSVT*FSPSRM
Trigger: CATTCGAGAGGGGCTGAAGCATGTTACCGAAGACTG...CAAGTTGAGTTCAAGGACAGCCAGAGCTACAGAGTAAAACCCTGTCTGGAAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021158.4
CDS GCA 90 bp ACCGCTGAAGTAGGCGAAAATGGTCTTGCCCTCATGCTCCTTCACTaGCTTGTCGAACTCCTCGAAGCCCAGCACGCTCACCTCCTCGAA +
Preference number: 5 (lower is better)
Translates to: TAEVGENGLALMLLH*LVELLEAQHAHLLE
Trigger: TTCGAGGAGGTGAGCGTGCTGGGCTTCGAGGAGTTCGACAAGGCAGTGAAGGAGCATGAGGGCAAGACCATTTTCGCCTACTTCAGCGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021158.4
CDS CAA 72 bp GCGAAAATGGTCTTGCCCTCATGCTCCTTCACTGCCTaGTCGAACTCCTCGAAGCCCAGCACGCTCACCTCC +
Preference number: 6 (lower is better)
Translates to: AKMVLPSCSFTA*SNSSKPSTLTS
Trigger: GGAGGTGAGCGTGCTGGGCTTCGAGGAGTTCGACAAGGCAGTGAAGGAGCATGAGGGCAAGACCATTTTCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021158.4
CDS GCA 72 bp GTAGGCGAAAATGGTCTTGCCCTCATGCTCCTTCACTaGCTTGTCGAACTCCTCGAAGCCCAGCACGCTCAC +
Preference number: 6 (lower is better)
Translates to: VGENGLALMLLH*LVELLEAQHAH
Trigger: GTGAGCGTGCTGGGCTTCGAGGAGTTCGACAAGGCAGTGAAGGAGCATGAGGGCAAGACCATTTTCGCCTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021158.4