RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TXLNA (Mus musculus)

Ensembl gene IDs: ENSMUSG00000053841

Ensembl transcript IDs: ENSMUST00000046425.16, ENSMUST00000084264.12, ENSMUST00000130017.2, ENSMUST00000132217.8, ENSMUST00000133803.8, ENSMUST00000154105.8

Found 334 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTCCGACGGCCTCAGCCCTGGGCTGCTCCGTGTGGAAGCCTTGCATaGACGAGGCCTGACTGGGCTGCTGCTCCTGTCCCAGCATGCCCA +
Preference number: 1 (lower is better)
Translates to: VRRPQPWAAPCGSLA*TRPDWAAAPVPACP
Trigger: TGGGCATGCTGGGACAGGAGCAGCAGCCCAGTCAGGCCTCGTCCATGCAAGGCTTCCACACGGAGCAGCCCAGGGCTGAGGCCGTCGGAC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR TCA 90 bp AGCGACACTGGCCTGGACCTGGCACTATCGGAGGAGAAGTGGGCCTaGGGGATTCCCTCCCACACAGGCACACCTCCACTTCTGCCCCAC +
Preference number: 1 (lower is better)
Translates to: SDTGLDLALSEEKWA*GIPSHTGTPPLLPH
Trigger: GTGGGGCAGAAGTGGAGGTGTGCCTGTGTGGGAGGGAATCCCTCAGGCCCACTTCTCCTCCGATAGTGCCAGGTCCAGGCCAGTGTCGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR GCA 90 bp GGGCAGGAGCCAAGAAACGACCATGCGCCAAGGGGCACGTGGGCCTaGGGTCCAGCAAAGGCTGCATGGAGAAGTGATGGGAACCAGTGG +
Preference number: 1 (lower is better)
Translates to: GQEPRNDHAPRGTWA*GPAKAAWRSDGNQW
Trigger: CCACTGGTTCCCATCACTTCTCCATGCAGCCTTTGCTGGACCGCAGGCCCACGTGCCCCTTGGCGCATGGTCGTTTCTTGGCTCCTGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR CCA 90 bp TGCCCTGGGTGCCTACAAGTGGATGGAGGGAAAGCCAAGGTTCTCTaGCCTGCCACACTGAGACCCAGCAGCTGTCACCCTGCACAAGCT +
Preference number: 1 (lower is better)
Translates to: CPGCLQVDGGKAKVL*PATLRPSSCHPAQA
Trigger: AGCTTGTGCAGGGTGACAGCTGCTGGGTCTCAGTGTGGCAGGCCAGAGAACCTTGGCTTTCCCTCCATCCACTTGTAGGCACCCAGGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR TCA 90 bp ATCTTCCCAAGCAGGATACCTTGGCACCCACATGGCAAAGGACCCTaGCAGGGTGGTTCCAAGTGGGGTACTGGAGGCCAGGCACCTGAG +
Preference number: 1 (lower is better)
Translates to: IFPSRIPWHPHGKGP*QGGSKWGTGGQAPE
Trigger: CTCAGGTGCCTGGCCTCCAGTACCCCACTTGGAACCACCCTGTCAGGGTCCTTTGCCATGTGGGTGCCAAGGTATCCTGCTTGGGAAGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR GCA 90 bp TCCAGGGCAGCGAGGGAGGGACGAGAGCCCAAATCGCCCAAGTTCTaGTCACAAAAAGGAGGAGTCCAGGCCTGGGTGCTTTCACTTGTC +
Preference number: 1 (lower is better)
Translates to: SRAAREGREPKSPKF*SQKGGVQAWVLSLV
Trigger: GACAAGTGAAAGCACCCAGGCCTGGACTCCTCCTTTTTGTGAGCAGAACTTGGGCGATTTGGGCTCTCGTCCCTCCCTCGCTGCCCTGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR CCA 90 bp AACCCACAAAATTCACAATTGCCAAGTGTCCGACGGCCTCAGCCCTaGGCTGCTCCGTGTGGAAGCCTTGCATGGACGAGGCCTGACTGG +
Preference number: 1 (lower is better)
Translates to: NPQNSQLPSVRRPQP*AAPCGSLAWTRPDW
Trigger: CCAGTCAGGCCTCGTCCATGCAAGGCTTCCACACGGAGCAGCCCAGGGCTGAGGCCGTCGGACACTTGGCAATTGTGAATTTTGTGGGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR GCA 90 bp GCACGCCTGCCCATCCATGTAAGACTAACCCACAAAATTCACAATTaGCAAGTGTCCGACGGCCTCAGCCCTGGGCTGCTCCGTGTGGAA +
Preference number: 1 (lower is better)
Translates to: ARLPIHVRLTHKIHN*QVSDGLSPGLLRVE
Trigger: TTCCACACGGAGCAGCCCAGGGCTGAGGCCGTCGGACACTTGGCAATTGTGAATTTTGTGGGTTAGTCTTACATGGATGGGCAGGCGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR GCA 90 bp TGGGTGCCTACAAGTGGATGGAGGGAAAGCCAAGGTTCTCTGGCCTaGCACACTGAGACCCAGCAGCTGTCACCCTGCACAAGCTTTAAG +
Preference number: 1 (lower is better)
Translates to: WVPTSGWRESQGSLA*HTETQQLSPCTSFK
Trigger: CTTAAAGCTTGTGCAGGGTGACAGCTGCTGGGTCTCAGTGTGGCAGGCCAGAGAACCTTGGCTTTCCCTCCATCCACTTGTAGGCACCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR CCA 90 bp GCCCTCTCACAGACAGGCAGCCTCCCTGAAGCTGGCCCAGTCTCCTaGGCTGACTTTGGAAAGCAGAGCAGCTGTAGTGACTGTAGATAT +
Preference number: 1 (lower is better)
Translates to: ALSQTGSLPEAGPVS*ADFGKQSSCSDCRY
Trigger: ATATCTACAGTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCCAGGAGACTGGGCCAGCTTCAGGGAGGCTGCCTGTCTGTGAGAGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR GCA 90 bp GGGGAGAAGGTAGAAGGGAGAGATTACTATCTGCATTGCCCTGGGTaGCTACAAGTGGATGGAGGGAAAGCCAAGGTTCTCTGGCCTGCC +
Preference number: 1 (lower is better)
Translates to: GEKVEGRDYYLHCPG*LQVDGGKAKVLWPA
Trigger: GGCAGGCCAGAGAACCTTGGCTTTCCCTCCATCCACTTGTAGGCACCCAGGGCAATGCAGATAGTAATCTCTCCCTTCTACCTTCTCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR TCA 90 bp GTTCGAAGGAAATGGCACAAGAGCAGTCCTCAAAAACCACACCTCTaGGATGGAGGTGAGGGGCAGGAGCCAAGAAACGACCATGCGCCA +
Preference number: 1 (lower is better)
Translates to: VRRKWHKSSPQKPHL*DGGEGQEPRNDHAP
Trigger: TGGCGCATGGTCGTTTCTTGGCTCCTGCCCCTCACCTCCATCTCAGAGGTGTGGTTTTTGAGGACTGCTCTTGTGCCATTTCCTTCGAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR TCA 90 bp CCTCAGCTTCCCAGACGGTCACTCCAGAAAAGCTGTTGTGGAAACTaGCTCAACACCTTGGCAGGTGTGCAGTCACGAGAGCTTCAGCAG +
Preference number: 1 (lower is better)
Translates to: PQLPRRSLQKSCCGN*LNTLAGVQSRELQQ
Trigger: CTGCTGAAGCTCTCGTGACTGCACACCTGCCAAGGTGTTGAGTCAGTTTCCACAACAGCTTTTCTGGAGTGACCGTCTGGGAAGCTGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR CCA 90 bp CAGAGGGGAGAAGGTAGAAGGGAGAGATTACTATCTGCATTGCCCTaGGTGCCTACAAGTGGATGGAGGGAAAGCCAAGGTTCTCTGGCC +
Preference number: 1 (lower is better)
Translates to: QRGEGRRERLLSALP*VPTSGWRESQGSLA
Trigger: GGCCAGAGAACCTTGGCTTTCCCTCCATCCACTTGTAGGCACCCAGGGCAATGCAGATAGTAATCTCTCCCTTCTACCTTCTCCCCTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR TCA 90 bp TTGTGCAGGCTAGAGGCACCTGTGAATGATAAGGCTACTGAGAACTaGGAAGCGACACTGGCCTGGACCTGGCACTATCGGAGGAGAAGT +
Preference number: 1 (lower is better)
Translates to: LCRLEAPVNDKATEN*EATLAWTWHYRRRS
Trigger: ACTTCTCCTCCGATAGTGCCAGGTCCAGGCCAGTGTCGCTTCTCAGTTCTCAGTAGCCTTATCATTCACAGGTGCCTCTAGCCTGCACAA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR TCA 90 bp CTGAGACCCAGCAGCTGTCACCCTGCACAAGCTTTAAGAGGTAGCTaGAGTGAGGCAAGCCAATGTAGTGGACCACACAAGGTCCTTCTG +
Preference number: 1 (lower is better)
Translates to: LRPSSCHPAQALRGS*SEASQCSGPHKVLL
Trigger: CAGAAGGACCTTGTGTGGTCCACTACATTGGCTTGCCTCACTTCAGCTACCTCTTAAAGCTTGTGCAGGGTGACAGCTGCTGGGTCTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR GCA 90 bp ATGGTCAGAGGGGAGAAGGTAGAAGGGAGAGATTACTATCTGCATTaGCCTGGGTGCCTACAAGTGGATGGAGGGAAAGCCAAGGTTCTC +
Preference number: 1 (lower is better)
Translates to: MVRGEKVEGRDYYLH*PGCLQVDGGKAKVL
Trigger: GAGAACCTTGGCTTTCCCTCCATCCACTTGTAGGCACCCAGGGCAATGCAGATAGTAATCTCTCCCTTCTACCTTCTCCCCTCTGACCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR CCA 90 bp GATATAAGACCTTGGGAGAAATTCCACAGGACAACAGATTCCAGCTaGAGATGGCAAAGCCTCAACACACAGCTGCTGGGCACCCTGAGT +
Preference number: 1 (lower is better)
Translates to: DIRPWEKFHRTTDSS*RWQSLNTQLLGTLS
Trigger: ACTCAGGGTGCCCAGCAGCTGTGTGTTGAGGCTTTGCCATCTCCAGCTGGAATCTGTTGTCCTGTGGAATTTCTCCCAAGGTCTTATATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR TCA 90 bp GGGATGTCTGTTCTTGACCTACCAGCCAGCTTAGGCAGGAAGAAGTaGAATCCCAAGGACTCACTTTTTGGCCAAGAGGGTTCGAAGGAA +
Preference number: 1 (lower is better)
Translates to: GMSVLDLPASLGRKK*NPKDSLFGQEGSKE
Trigger: TTCCTTCGAACCCTCTTGGCCAAAAAGTGAGTCCTTGGGATTTCACTTCTTCCTGCCTAAGCTGGCTGGTAGGTCAAGAACAGACATCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CCA 90 bp GGGACTTGCCCAAGTGAGGAAGGCGCTGGCCCTCTCACAGACAGGCAGCCTCCCCGACGGCCTCAGCCCTaGGCTGCTCCGTGTGGAAGC +
Preference number: 2 (lower is better)
Translates to: GTCPSEEGAGPLTDRQPPRRPQP*AAPCGS
Trigger: GCTTCCACACGGAGCAGCCCAGGGCTGAGGCCGTCG...GGGAGGCTGCCTGTCTGTGAGAGGGCCAGCGCCTTCCTCACTTGGGCAAGTCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR CAA 90 bp CAAGTGTCCGACGGCCTCAGCCCTGGGCTGCTCCGTGTGGAAGCCTaGCATGGACGAGGCCTGACTGGGCTGCTGCTCCTGTCCCAGCAT +
Preference number: 2 (lower is better)
Translates to: QVSDGLSPGLLRVEA*HGRGLTGLLLLSQH
Trigger: ATGCTGGGACAGGAGCAGCAGCCCAGTCAGGCCTCGTCCATGCAAGGCTTCCACACGGAGCAGCCCAGGGCTGAGGCCGTCGGACACTTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CCA 90 bp CGACCATGCGCCAAGGGGCACGTGGGCCTGCGGTCCAGCAAAGGCTGCATGGAGCTGGGCTGCTCCGTGTaGAAGCCTTGCATGGACGAG +
Preference number: 2 (lower is better)
Translates to: RPCAKGHVGLRSSKGCMELGCSV*KPCMDE
Trigger: CTCGTCCATGCAAGGCTTCCACACGGAGCAGCCCAG...CTCCATGCAGCCTTTGCTGGACCGCAGGCCCACGTGCCCCTTGGCGCATGGTCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CCA 90 bp CCAAATCGCCCAAGTTCTGCTCACAAAAAGGAGGAGTCCAGGCCTGGGTGCTTTCGACGGCCTCAGCCCTaGGCTGCTCCGTGTGGAAGC +
Preference number: 2 (lower is better)
Translates to: PNRPSSAHKKEESRPGCFRRPQP*AAPCGS
Trigger: GCTTCCACACGGAGCAGCCCAGGGCTGAGGCCGTCG...AAAGCACCCAGGCCTGGACTCCTCCTTTTTGTGAGCAGAACTTGGGCGATTTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CCA 90 bp GGGACTTGCCCAAGTGAGGAAGGCGCTGGCCCTCTCACAGACAGGCAGCCTCCCGATTCCAGCTGGAGATaGCAAAGCCTCAACACACAG +
Preference number: 2 (lower is better)
Translates to: GTCPSEEGAGPLTDRQPPDSSWR*QSLNTQ
Trigger: CTGTGTGTTGAGGCTTTGCCATCTCCAGCTGGAATC...GGGAGGCTGCCTGTCTGTGAGAGGGCCAGCGCCTTCCTCACTTGGGCAAGTCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CCA 90 bp GGTGTGCAGTCACGAGAGCTTCAGCAGAGCCCCGAGACCACAGTAACACTGAGGACCTTGGCACCCACATaGCAAAGGACCCTGACAGGG +
Preference number: 2 (lower is better)
Translates to: GVQSRELQQSPETTVTLRTLAPT*QRTLTG
Trigger: CCCTGTCAGGGTCCTTTGCCATGTGGGTGCCAAGGT...CCTCAGTGTTACTGTGGTCTCGGGGCTCTGCTGAAGCTCTCGTGACTGCACACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CCA 90 bp ACAAGAGCAGTCCTCAAAAACCACACCTCTGAGATGGAGGTGAGGGGCAGGAGCGAAGCGACACTGGCCTaGACCTGGCACTATCGGAGG +
Preference number: 2 (lower is better)
Translates to: TRAVLKNHTSEMEVRGRSEATLA*TWHYRR
Trigger: CCTCCGATAGTGCCAGGTCCAGGCCAGTGTCGCTTC...GCTCCTGCCCCTCACCTCCATCTCAGAGGTGTGGTTTTTGAGGACTGCTCTTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CCA 90 bp ACAGCTATTTTGGTTCCTGGGATGTCTGTTCTTGACCTACCAGCCAGCTTAGGCGCGCCAAGGGGCACGTaGGCCTGCGGTCCAGCAAAG +
Preference number: 2 (lower is better)
Translates to: TAILVPGMSVLDLPASLGAPRGT*ACGPAK
Trigger: CTTTGCTGGACCGCAGGCCCACGTGCCCCTTGGCGC...GCCTAAGCTGGCTGGTAGGTCAAGAACAGACATCCCAGGAACCAAAATAGCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR CAA 90 bp AGACAGGCAGCCTCCCTGAAGCTGGCCCAGTCTCCTGGGCTGACTTaGGAAAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGG +
Preference number: 2 (lower is better)
Translates to: RQAASLKLAQSPGLT*ESRAAVVTVDMVRG
Trigger: CCCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCCAGGAGACTGGGCCAGCTTCAGGGAGGCTGCCTGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR TCA 90 bp CAGACGGTCACTCCAGAAAAGCTGTTGTGGAAACTGACTCAACACCTTGGCAGGTGCATGGACGAGGCCTaGCTGGGCTGCTGCTCCTGT +
Preference number: 2 (lower is better)
Translates to: QTVTPEKLLWKLTQHLGRCMDEA*LGCCSC
Trigger: ACAGGAGCAGCAGCCCAGTCAGGCCTCGTCCATGCA...CCTGCCAAGGTGTTGAGTCAGTTTCCACAACAGCTTTTCTGGAGTGACCGTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR TCA 90 bp GAAACTGACTCAACACCTTGGCAGGTGTGCAGTCACGAGAGCTTCAGCAGAGCCGCACACTGTCCGAGGTaGAAGCCCACAGTGCACCTA +
Preference number: 2 (lower is better)
Translates to: ETDSTPWQVCSHESFSRAAHCPR*KPTVHL
Trigger: TAGGTGCACTGTGGGCTTTCACCTCGGACAGTGTGC...GGCTCTGCTGAAGCTCTCGTGACTGCACACCTGCCAAGGTGTTGAGTCAGTTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR GCA 90 bp TCTGCATTGCCCTGGGTGCCTACAAGTGGATGGAGGGAAAGCCAAGGTTCTCTGGCCCCACAAAGACTCTaGCAGGGACACCATTCCCAG +
Preference number: 2 (lower is better)
Translates to: SALPWVPTSGWRESQGSLAPQRL*QGHHSQ
Trigger: CTGGGAATGGTGTCCCTGGCAGAGTCTTTGTGGGGC...CAGAGAACCTTGGCTTTCCCTCCATCCACTTGTAGGCACCCAGGGCAATGCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR GCA 90 bp ACAAGAGCAGTCCTCAAAAACCACACCTCTGAGATGGAGGTGAGGGGCAGGAGCGCCCCACAAAGACTCTaGCAGGGACACCATTCCCAG +
Preference number: 2 (lower is better)
Translates to: TRAVLKNHTSEMEVRGRSAPQRL*QGHHSQ
Trigger: CTGGGAATGGTGTCCCTGGCAGAGTCTTTGTGGGGC...GCTCCTGCCCCTCACCTCCATCTCAGAGGTGTGGTTTTTGAGGACTGCTCTTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CCA 90 bp GGGACTTGCCCAAGTGAGGAAGGCGCTGGCCCTCTCACAGACAGGCAGCCTCCCCCAGAAAAGCTGTTGTaGAAACTGACTCAACACCTT +
Preference number: 2 (lower is better)
Translates to: GTCPSEEGAGPLTDRQPPPEKLL*KLTQHL
Trigger: AAGGTGTTGAGTCAGTTTCCACAACAGCTTTTCTGG...GGGAGGCTGCCTGTCTGTGAGAGGGCCAGCGCCTTCCTCACTTGGGCAAGTCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR TCA 90 bp GTGTATGGAAGAGAAGCCTCAGCTTCCCAGACGGTCACTCCAGAAAAGCTGTTGAGGCCAAGAGGGGTCTaGGCCTTAGAGCTGGGTAGG +
Preference number: 2 (lower is better)
Translates to: VYGREASASQTVTPEKLLRPRGV*ALELGR
Trigger: CCTACCCAGCTCTAAGGCTCAGACCCCTCTTGGCCT...CAACAGCTTTTCTGGAGTGACCGTCTGGGAAGCTGAGGCTTCTCTTCCATACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR TCA 90 bp TCAGTGTATGGAAGAGAAGCCTCAGCTTCCCAGACGGTCACTCCAGAAAAGCTGAGGCCAAGAGGGGTCTaGGCCTTAGAGCTGGGTAGG +
Preference number: 2 (lower is better)
Translates to: SVYGREASASQTVTPEKLRPRGV*ALELGR
Trigger: CCTACCCAGCTCTAAGGCTCAGACCCCTCTTGGCCT...CAGCTTTTCTGGAGTGACCGTCTGGGAAGCTGAGGCTTCTCTTCCATACACTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR TCA 90 bp AAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGGGAGAAGGTAGAAGGTCTGGCCTGCCACACTaGGACCCAGCAGCTGTCACC +
Preference number: 2 (lower is better)
Translates to: KQSSCSDCRYGQRGEGRRSGLPH*DPAAVT
Trigger: GGTGACAGCTGCTGGGTCTCAGTGTGGCAGGCCAGA...CCTTCTACCTTCTCCCCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR GCA 90 bp GAAACTGACTCAACACCTTGGCAGGTGTGCAGTCACGAGAGCTTCAGCAGAGCCGCACACCTCCACTTCTaGCCCACAAAGACTCTGCCA +
Preference number: 2 (lower is better)
Translates to: ETDSTPWQVCSHESFSRAAHLHF*PTKTLP
Trigger: TGGCAGAGTCTTTGTGGGGCAGAAGTGGAGGTGTGC...GGCTCTGCTGAAGCTCTCGTGACTGCACACCTGCCAAGGTGTTGAGTCAGTTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CCA 90 bp TGGGCTGACTTTGGAAAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGTGGACGAGGCCTGACTaGGCTGCTGCTCCTGTCCCA +
Preference number: 2 (lower is better)
Translates to: WADFGKQSSCSDCRYGQRWTRPD*AAAPVP
Trigger: TGGGACAGGAGCAGCAGCCCAGTCAGGCCTCGTCCA...CCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CCA 90 bp TCAGTGTATGGAAGAGAAGCCTCAGCTTCCCAGACGGTCACTCCAGAAAAGCTGCAGGGTGGTTCCAAGTaGGGTACTGGAGGCCAGGCA +
Preference number: 2 (lower is better)
Translates to: SVYGREASASQTVTPEKLQGGSK*GTGGQA
Trigger: TGCCTGGCCTCCAGTACCCCACTTGGAACCACCCTG...CAGCTTTTCTGGAGTGACCGTCTGGGAAGCTGAGGCTTCTCTTCCATACACTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR TCA 90 bp CAGACGGTCACTCCAGAAAAGCTGTTGTGGAAACTGACTCAACACCTTGGCAGGGCACACTGTCCGAGGTaGAAGCCCACAGTGCACCTA +
Preference number: 2 (lower is better)
Translates to: QTVTPEKLLWKLTQHLGRAHCPR*KPTVHL
Trigger: TAGGTGCACTGTGGGCTTTCACCTCGGACAGTGTGC...CCTGCCAAGGTGTTGAGTCAGTTTCCACAACAGCTTTTCTGGAGTGACCGTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR TCA 90 bp TCAGTGTATGGAAGAGAAGCCTCAGCTTCCCAGACGGTCACTCCAGAAAAGCTGGGCTGCATGGAGAAGTaGTGGGAACCAGTGGTTGCC +
Preference number: 2 (lower is better)
Translates to: SVYGREASASQTVTPEKLGCMEK*WEPVVA
Trigger: GGCAACCACTGGTTCCCATCACTTCTCCATGCAGCC...CAGCTTTTCTGGAGTGACCGTCTGGGAAGCTGAGGCTTCTCTTCCATACACTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CCA 90 bp TGTCAGCACAACTTCAAACAAGTATGGGTGGCAAAGGAAAGCAGTCATGGGGACTGGACGAGGCCTGACTaGGCTGCTGCTCCTGTCCCA +
Preference number: 2 (lower is better)
Translates to: CQHNFKQVWVAKESSHGDWTRPD*AAAPVP
Trigger: TGGGACAGGAGCAGCAGCCCAGTCAGGCCTCGTCCA...GTCCCCATGACTGCTTTCCTTTGCCACCCATACTTGTTTGAAGTTGTGCTGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CCA 90 bp AAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGGGAGAAGGTAGAAGGCAGGGTGGTTCCAAGTaGGGTACTGGAGGCCAGGCA +
Preference number: 2 (lower is better)
Translates to: KQSSCSDCRYGQRGEGRRQGGSK*GTGGQA
Trigger: TGCCTGGCCTCCAGTACCCCACTTGGAACCACCCTG...CCTTCTACCTTCTCCCCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CCA 90 bp TCAGTGTATGGAAGAGAAGCCTCAGCTTCCCAGACGGTCACTCCAGAAAAGCTGAGGACCCTGACAGGGTaGTTCCAAGTGGGGTACTGG +
Preference number: 2 (lower is better)
Translates to: SVYGREASASQTVTPEKLRTLTG*FQVGYW
Trigger: CCAGTACCCCACTTGGAACCACCCTGTCAGGGTCCT...CAGCTTTTCTGGAGTGACCGTCTGGGAAGCTGAGGCTTCTCTTCCATACACTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR CAA 90 bp GGAAGAGAAGCCTCAGCTTCCCAGACGGTCACTCCAGAAAAGCTGTaGTGGAAACTGACTCAACACCTTGGCAGGTGTGCAGTCACGAGA +
Preference number: 2 (lower is better)
Translates to: GREASASQTVTPEKL*WKLTQHLGRCAVTR
Trigger: TCTCGTGACTGCACACCTGCCAAGGTGTTGAGTCAGTTTCCACAACAGCTTTTCTGGAGTGACCGTCTGGGAAGCTGAGGCTTCTCTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR TCA 90 bp TCAGTGTATGGAAGAGAAGCCTCAGCTTCCCAGACGGTCACTCCAGAAAAGCTGCCTGCCAGCTTACTGTaGCGGCAGCTTCAGATGACA +
Preference number: 2 (lower is better)
Translates to: SVYGREASASQTVTPEKLPASLL*RQLQMT
Trigger: TGTCATCTGAAGCTGCCGTCACAGTAAGCTGGCAGG...CAGCTTTTCTGGAGTGACCGTCTGGGAAGCTGAGGCTTCTCTTCCATACACTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR TCA 90 bp TCAGTGTATGGAAGAGAAGCCTCAGCTTCCCAGACGGTCACTCCAGAAAAGCTGAAGGCTACTGAGAACTaGGAAGCGACACTGGCCTGG +
Preference number: 2 (lower is better)
Translates to: SVYGREASASQTVTPEKLKATEN*EATLAW
Trigger: CCAGGCCAGTGTCGCTTCTCAGTTCTCAGTAGCCTT...CAGCTTTTCTGGAGTGACCGTCTGGGAAGCTGAGGCTTCTCTTCCATACACTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR TCA 90 bp CCCTGGACTCCAAGCCATACCCACTGTGGTCCTCTAGAGAAAAAGCTAACAATCCCTCTGAGATGGAGGTaGGGGGCAGGAGCCAAGAAA +
Preference number: 2 (lower is better)
Translates to: PWTPSHTHCGPLEKKLTIPLRWR*GAGAKK
Trigger: TTTCTTGGCTCCTGCCCCTCACCTCCATCTCAGAGG...GATTGTTAGCTTTTTCTCTAGAGGACCACAGTGGGTATGGCTTGGAGTCCAGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR GCA 90 bp GTGTATGGAAGAGAAGCCTCAGCTTCCCAGACGGTCACTCCAGAAAAGCTGTTGGCACACCTCCACTTCTaGCCCACAAAGACTCTGCCA +
Preference number: 2 (lower is better)
Translates to: VYGREASASQTVTPEKLLAHLHF*PTKTLP
Trigger: TGGCAGAGTCTTTGTGGGGCAGAAGTGGAGGTGTGC...CAACAGCTTTTCTGGAGTGACCGTCTGGGAAGCTGAGGCTTCTCTTCCATACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR GCA 90 bp TGGGCTGACTTTGGAAAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGCAAGGTTCTCTGGCCTaGCACACTGAGACCCAGCAG +
Preference number: 2 (lower is better)
Translates to: WADFGKQSSCSDCRYGQRQGSLA*HTETQQ
Trigger: CTGCTGGGTCTCAGTGTGGCAGGCCAGAGAACCTTG...CCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CCA 90 bp CACACCTCTGAGATGGAGGTGAGGGGCAGGAGCCAAGAAACGACCATGCGCCAATGGGTAGGAAAATATTaGAGTCATCTGACCTGCCAG +
Preference number: 2 (lower is better)
Translates to: HTSEMEVRGRSQETTMRQWVGKY*SHLTCQ
Trigger: CTGGCAGGTCAGATGACTCCAATATTTTCCTACCCA...TTGGCGCATGGTCGTTTCTTGGCTCCTGCCCCTCACCTCCATCTCAGAGGTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR TCA 90 bp CTTAGGCAGGAAGAAGTGAAATCCCAAGGACTCACTTTTTGGCCAAGAGGGTTCGGCTGCATGGAGAAGTaGTGGGAACCAGTGGTTGCC +
Preference number: 2 (lower is better)
Translates to: LRQEEVKSQGLTFWPRGFGCMEK*WEPVVA
Trigger: GGCAACCACTGGTTCCCATCACTTCTCCATGCAGCC...GAACCCTCTTGGCCAAAAAGTGAGTCCTTGGGATTTCACTTCTTCCTGCCTAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR TCA 90 bp CCCTGGACTCCAAGCCATACCCACTGTGGTCCTCTAGAGAAAAAGCTAACAATCCAAAAACCACACCTCTaGGATGGAGGTGAGGGGCAG +
Preference number: 2 (lower is better)
Translates to: PWTPSHTHCGPLEKKLTIQKPHL*DGGEGQ
Trigger: CTGCCCCTCACCTCCATCTCAGAGGTGTGGTTTTTG...GATTGTTAGCTTTTTCTCTAGAGGACCACAGTGGGTATGGCTTGGAGTCCAGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR TCA 90 bp GGGCTGACTTTGGAAAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGGTGGGATGTCTGTTCTTaGCCTACCAGCCAGCTTAGG +
Preference number: 2 (lower is better)
Translates to: GLTLESRAAVVTVDMVRGWDVCS*PTSQLR
Trigger: CCTAAGCTGGCTGGTAGGTCAAGAACAGACATCCCA...CCCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CCA 90 bp CCCTGGACTCCAAGCCATACCCACTGTGGTCCTCTAGAGAAAAAGCTAACAATCGGAGGAGTCCAGGCCTaGGTGCTTTCACTTGTCATG +
Preference number: 2 (lower is better)
Translates to: PWTPSHTHCGPLEKKLTIGGVQA*VLSLVM
Trigger: CATGACAAGTGAAAGCACCCAGGCCTGGACTCCTCC...GATTGTTAGCTTTTTCTCTAGAGGACCACAGTGGGTATGGCTTGGAGTCCAGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CCA 90 bp TCAGTGTATGGAAGAGAAGCCTCAGCTTCCCAGACGGTCACTCCAGAAAAGCTGCCAAGCAGGATACCTTaGCACCCACATGGCAAAGGA +
Preference number: 2 (lower is better)
Translates to: SVYGREASASQTVTPEKLPSRIP*HPHGKG
Trigger: TCCTTTGCCATGTGGGTGCCAAGGTATCCTGCTTGG...CAGCTTTTCTGGAGTGACCGTCTGGGAAGCTGAGGCTTCTCTTCCATACACTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CCA 90 bp GGGCTGACTTTGGAAAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGGACTGACTCAACACCTTaGCAGGTGTGCAGTCACGAG +
Preference number: 2 (lower is better)
Translates to: GLTLESRAAVVTVDMVRGTDSTP*QVCSHE
Trigger: CTCGTGACTGCACACCTGCCAAGGTGTTGAGTCAGT...CCCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CCA 90 bp TGTCAGCACAACTTCAAACAAGTATGGGTGGCAAAGGAAAGCAGTCATGGGGACGCTGGCCCAGTCTCCTaGGCTGACTTTGGAAAGCAG +
Preference number: 2 (lower is better)
Translates to: CQHNFKQVWVAKESSHGDAGPVS*ADFGKQ
Trigger: CTGCTTTCCAAAGTCAGCCCAGGAGACTGGGCCAGC...GTCCCCATGACTGCTTTCCTTTGCCACCCATACTTGTTTGAAGTTGTGCTGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR CAA 90 bp TATGGTCAGAGGGGAGAAGGTAGAAGGGAGAGATTACTATCTGCATaGCCCTGGGTGCCTACAAGTGGATGGAGGGAAAGCCAAGGTTCT +
Preference number: 2 (lower is better)
Translates to: YGQRGEGRRERLLSA*PWVPTSGWRESQGS
Trigger: AGAACCTTGGCTTTCCCTCCATCCACTTGTAGGCACCCAGGGCAATGCAGATAGTAATCTCTCCCTTCTACCTTCTCCCCTCTGACCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR TCA 90 bp CTTAGGCAGGAAGAAGTGAAATCCCAAGGACTCACTTTTTGGCCAAGAGGGTTCCAAAAACCACACCTCTaGGATGGAGGTGAGGGGCAG +
Preference number: 2 (lower is better)
Translates to: LRQEEVKSQGLTFWPRGFQKPHL*DGGEGQ
Trigger: CTGCCCCTCACCTCCATCTCAGAGGTGTGGTTTTTG...GAACCCTCTTGGCCAAAAAGTGAGTCCTTGGGATTTCACTTCTTCCTGCCTAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CCA 90 bp TGGGCTGACTTTGGAAAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGCTATCTGCATTGCCCTaGGTGCCTACAAGTGGATGG +
Preference number: 2 (lower is better)
Translates to: WADFGKQSSCSDCRYGQRLSALP*VPTSGW
Trigger: CCATCCACTTGTAGGCACCCAGGGCAATGCAGATAG...CCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR TCA 90 bp TGGGCTGACTTTGGAAAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGAGCTGTTGTGGAAACTaGCTCAACACCTTGGCAGGT +
Preference number: 2 (lower is better)
Translates to: WADFGKQSSCSDCRYGQRSCCGN*LNTLAG
Trigger: ACCTGCCAAGGTGTTGAGTCAGTTTCCACAACAGCT...CCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CCA 90 bp TGTCAGCACAACTTCAAACAAGTATGGGTGGCAAAGGAAAGCAGTCATGGGGACCCAAGCAGGATACCTTaGCACCCACATGGCAAAGGA +
Preference number: 2 (lower is better)
Translates to: CQHNFKQVWVAKESSHGDPSRIP*HPHGKG
Trigger: TCCTTTGCCATGTGGGTGCCAAGGTATCCTGCTTGG...GTCCCCATGACTGCTTTCCTTTGCCACCCATACTTGTTTGAAGTTGTGCTGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CCA 90 bp TCAGTGTATGGAAGAGAAGCCTCAGCTTCCCAGACGGTCACTCCAGAAAAGCTGCAAGGACTCACTTTTTaGCCAAGAGGGTTCGAAGGA +
Preference number: 2 (lower is better)
Translates to: SVYGREASASQTVTPEKLQGLTF*PRGFEG
Trigger: TCCTTCGAACCCTCTTGGCCAAAAAGTGAGTCCTTG...CAGCTTTTCTGGAGTGACCGTCTGGGAAGCTGAGGCTTCTCTTCCATACACTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CCA 90 bp GTGTATGGAAGAGAAGCCTCAGCTTCCCAGACGGTCACTCCAGAAAAGCTGTTGCAAGGACTCACTTTTTaGCCAAGAGGGTTCGAAGGA +
Preference number: 2 (lower is better)
Translates to: VYGREASASQTVTPEKLLQGLTF*PRGFEG
Trigger: TCCTTCGAACCCTCTTGGCCAAAAAGTGAGTCCTTG...CAACAGCTTTTCTGGAGTGACCGTCTGGGAAGCTGAGGCTTCTCTTCCATACAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR GCA 90 bp AGGGACGGTGAAGACAACTCCTCACAGCTATTTTGGTTCCTGGGATGTCTGTTCGTCTCCAACTTCATCTaGACACTGTCCGAGGTGAAA +
Preference number: 2 (lower is better)
Translates to: RDGEDNSSQLFWFLGCLFVSNFI*TLSEVK
Trigger: TTTCACCTCGGACAGTGTGCAGATGAAGTTGGAGAC...GAACAGACATCCCAGGAACCAAAATAGCTGTGAGGAGTTGTCTTCACCGTCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR GCA 90 bp TCAGTGTATGGAAGAGAAGCCTCAGCTTCCCAGACGGTCACTCCAGAAAAGCTGAAATCGCCCAAGTTCTaGTCACAAAAAGGAGGAGTC +
Preference number: 2 (lower is better)
Translates to: SVYGREASASQTVTPEKLKSPKF*SQKGGV
Trigger: GACTCCTCCTTTTTGTGAGCAGAACTTGGGCGATTT...CAGCTTTTCTGGAGTGACCGTCTGGGAAGCTGAGGCTTCTCTTCCATACACTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CCA 90 bp GACCTTGGGAGAAATTCCACAGGACAACAGATTCCAGCTGGAGATGGCAAAGCCTGGGTAGGAAAATATTaGAGTCATCTGACCTGCCAG +
Preference number: 2 (lower is better)
Translates to: DLGRNSTGQQIPAGDGKAWVGKY*SHLTCQ
Trigger: CTGGCAGGTCAGATGACTCCAATATTTTCCTACCCA...GGCTTTGCCATCTCCAGCTGGAATCTGTTGTCCTGTGGAATTTCTCCCAAGGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CCA 90 bp CAGACGGTCACTCCAGAAAAGCTGTTGTGGAAACTGACTCAACACCTTGGCAGGTCCTCACAGCTATTTTaGTTCCTGGGATGTCTGTTC +
Preference number: 2 (lower is better)
Translates to: QTVTPEKLLWKLTQHLGRSSQLF*FLGCLF
Trigger: GAACAGACATCCCAGGAACCAAAATAGCTGTGAGGA...CCTGCCAAGGTGTTGAGTCAGTTTCCACAACAGCTTTTCTGGAGTGACCGTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CCA 90 bp TGGGCTGACTTTGGAAAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGTCCAGTCTCAGTGTATaGAAGAGAAGCCTCAGCTTC +
Preference number: 2 (lower is better)
Translates to: WADFGKQSSCSDCRYGQRSSLSV*KRSLSF
Trigger: GAAGCTGAGGCTTCTCTTCCATACACTGAGACTGGA...CCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR TCA 90 bp ATTTCTGGATTTAAACACATGATCATCAGCACGAGATGTTTTCTTCCAGCTGTTTGCATGGACGAGGCCTaGCTGGGCTGCTGCTCCTGT +
Preference number: 2 (lower is better)
Translates to: ISGFKHMIISTRCFLPAVCMDEA*LGCCSC
Trigger: ACAGGAGCAGCAGCCCAGTCAGGCCTCGTCCATGCA...AACAGCTGGAAGAAAACATCTCGTGCTGATGATCATGTGTTTAAATCCAGAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR TCA 90 bp CAGCTGTTTACTTTTTGGTTTCCTGACAAGGGGTCCTGCTTCCTAGCTCTGCTGTGCTTTCACTTGTCATaGGCTCTGAAAAGGCCAAGA +
Preference number: 2 (lower is better)
Translates to: QLFTFWFPDKGSCFLALLCFHLS*ALKRPR
Trigger: TCTTGGCCTTTTCAGAGCTCATGACAAGTGAAAGCA...CAGCAGAGCTAGGAAGCAGGACCCCTTGTCAGGAAACCAAAAAGTAAACAGCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR TCA 90 bp AAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGGGAGAAGGTAGAAGGTGCTTTCACTTGTCATaGGCTCTGAAAAGGCCAAGA +
Preference number: 2 (lower is better)
Translates to: KQSSCSDCRYGQRGEGRRCFHLS*ALKRPR
Trigger: TCTTGGCCTTTTCAGAGCTCATGACAAGTGAAAGCA...CCTTCTACCTTCTCCCCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR TCA 90 bp TCTGCATTGCCCTGGGTGCCTACAAGTGGATGGAGGGAAAGCCAAGGTTCTCTGCCCTGTTCCTTCCTTTaGAGTTCTTTAATACAAACT +
Preference number: 2 (lower is better)
Translates to: SALPWVPTSGWRESQGSLPCSFL*SSLIQT
Trigger: AGTTTGTATTAAAGAACTTCAAAGGAAGGAACAGGG...CAGAGAACCTTGGCTTTCCCTCCATCCACTTGTAGGCACCCAGGGCAATGCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR GCA 90 bp ACAGCTATTTTGGTTCCTGGGATGTCTGTTCTTGACCTACCAGCCAGCTTAGGCAAATCGCCCAAGTTCTaGTCACAAAAAGGAGGAGTC +
Preference number: 2 (lower is better)
Translates to: TAILVPGMSVLDLPASLGKSPKF*SQKGGV
Trigger: GACTCCTCCTTTTTGTGAGCAGAACTTGGGCGATTT...GCCTAAGCTGGCTGGTAGGTCAAGAACAGACATCCCAGGAACCAAAATAGCTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CCA 90 bp TGTCAGCACAACTTCAAACAAGTATGGGTGGCAAAGGAAAGCAGTCATGGGGACACAACAGATTCCAGCTaGAGATGGCAAAGCCTCAAC +
Preference number: 2 (lower is better)
Translates to: CQHNFKQVWVAKESSHGDTTDSS*RWQSLN
Trigger: GTTGAGGCTTTGCCATCTCCAGCTGGAATCTGTTGT...GTCCCCATGACTGCTTTCCTTTGCCACCCATACTTGTTTGAAGTTGTGCTGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR TCA 90 bp CAGACGGTCACTCCAGAAAAGCTGTTGTGGAAACTGACTCAACACCTTGGCAGGCCCTGTTCCTTCCTTTaGAGTTCTTTAATACAAACT +
Preference number: 2 (lower is better)
Translates to: QTVTPEKLLWKLTQHLGRPCSFL*SSLIQT
Trigger: AGTTTGTATTAAAGAACTTCAAAGGAAGGAACAGGG...CCTGCCAAGGTGTTGAGTCAGTTTCCACAACAGCTTTTCTGGAGTGACCGTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR CAA 90 bp AAAAACCCTCCCAAAAGAATCCTTTGGGTGACATTTGTCAATTATTaGTGCAGGCTAGAGGCACCTGTGAATGATAAGGCTACTGAGAAC +
Preference number: 2 (lower is better)
Translates to: KNPPKRILWVTFVNY*CRLEAPVNDKATEN
Trigger: GTTCTCAGTAGCCTTATCATTCACAGGTGCCTCTAGCCTGCACAAATAATTGACAAATGTCACCCAAAGGATTCTTTTGGGAGGGTTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR CAA 90 bp GCCAGGCACCTGAGGACCACTGCTAGAGTATCCCTGTTCCTTCCTTaGAAGTTCTTTAATACAAACTCTTATGCAAAACAAGCAAACAAA +
Preference number: 2 (lower is better)
Translates to: ARHLRTTARVSLFLP*KFFNTNSYAKQANK
Trigger: TTTGTTTGCTTGTTTTGCATAAGAGTTTGTATTAAAGAACTTCAAAGGAAGGAACAGGGATACTCTAGCAGTGGTCCTCAGGTGCCTGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CCA 90 bp GGACTATTTAATGTAAAATTCATCAATAGCAAGTCCCTGGCTGCTGCCAATTCCCAGCTGTTTACTTTTTaGTTTCCTGACAAGGGGTCC +
Preference number: 2 (lower is better)
Translates to: GLFNVKFINSKSLAAANSQLFTF*FPDKGS
Trigger: GGACCCCTTGTCAGGAAACCAAAAAGTAAACAGCTG...GGAATTGGCAGCAGCCAGGGACTTGCTATTGATGAATTTTACATTAAATAGTCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR CCA 72 bp CCTCAGCCCTGGGCTGCTCCGTGTGGAAGCCTTGCATaGACGAGGCCTGACTGGGCTGCTGCTCCTGTCCCA +
Preference number: 3 (lower is better)
Translates to: PQPWAAPCGSLA*TRPDWAAAPVP
Trigger: TGGGACAGGAGCAGCAGCCCAGTCAGGCCTCGTCCATGCAAGGCTTCCACACGGAGCAGCCCAGGGCTGAGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR CCA 72 bp GCTCCGTGTGGAAGCCTTGCATGGACGAGGCCTGACTaGGCTGCTGCTCCTGTCCCAGCATGCCCAAGCACC +
Preference number: 3 (lower is better)
Translates to: APCGSLAWTRPD*AAAPVPACPST
Trigger: GGTGCTTGGGCATGCTGGGACAGGAGCAGCAGCCCAGTCAGGCCTCGTCCATGCAAGGCTTCCACACGGAGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR TCA 72 bp GGCCTGGACCTGGCACTATCGGAGGAGAAGTGGGCCTaGGGGATTCCCTCCCACACAGGCACACCTCCACTT +
Preference number: 3 (lower is better)
Translates to: GLDLALSEEKWA*GIPSHTGTPPL
Trigger: AAGTGGAGGTGTGCCTGTGTGGGAGGGAATCCCTCAGGCCCACTTCTCCTCCGATAGTGCCAGGTCCAGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR GCA 72 bp CCAAGAAACGACCATGCGCCAAGGGGCACGTGGGCCTaGGGTCCAGCAAAGGCTGCATGGAGAAGTGATGGG +
Preference number: 3 (lower is better)
Translates to: PRNDHAPRGTWA*GPAKAAWRSDG
Trigger: CCCATCACTTCTCCATGCAGCCTTTGCTGGACCGCAGGCCCACGTGCCCCTTGGCGCATGGTCGTTTCTTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR CCA 72 bp AGGGGCACGTGGGCCTGCGGTCCAGCAAAGGCTGCATaGAGAAGTGATGGGAACCAGTGGTTGCCTCCTAGG +
Preference number: 3 (lower is better)
Translates to: RGTWACGPAKAA*RSDGNQWLPPR
Trigger: CCTAGGAGGCAACCACTGGTTCCCATCACTTCTCCATGCAGCCTTTGCTGGACCGCAGGCCCACGTGCCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR CCA 72 bp CAGGAGCCAAGAAACGACCATGCGCCAAGGGGCACGTaGGCCTGCGGTCCAGCAAAGGCTGCATGGAGAAGT +
Preference number: 3 (lower is better)
Translates to: QEPRNDHAPRGT*ACGPAKAAWRS
Trigger: ACTTCTCCATGCAGCCTTTGCTGGACCGCAGGCCCACGTGCCCCTTGGCGCATGGTCGTTTCTTGGCTCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR TCA 72 bp AGCAGGATACCTTGGCACCCACATGGCAAAGGACCCTaGCAGGGTGGTTCCAAGTGGGGTACTGGAGGCCAG +
Preference number: 3 (lower is better)
Translates to: SRIPWHPHGKGP*QGGSKWGTGGQ
Trigger: CTGGCCTCCAGTACCCCACTTGGAACCACCCTGTCAGGGTCCTTTGCCATGTGGGTGCCAAGGTATCCTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR GCA 72 bp GCGAGGGAGGGACGAGAGCCCAAATCGCCCAAGTTCTaGTCACAAAAAGGAGGAGTCCAGGCCTGGGTGCTT +
Preference number: 3 (lower is better)
Translates to: AREGREPKSPKF*SQKGGVQAWVL
Trigger: AAGCACCCAGGCCTGGACTCCTCCTTTTTGTGAGCAGAACTTGGGCGATTTGGGCTCTCGTCCCTCCCTCGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR GCA 72 bp GAGGGATTCCCTCCCACACAGGCACACCTCCACTTCTaGCCCACAAAGACTCTGCCAGGGACACCATTCCCA +
Preference number: 3 (lower is better)
Translates to: EGFPPTQAHLHF*PTKTLPGTPFP
Trigger: TGGGAATGGTGTCCCTGGCAGAGTCTTTGTGGGGCAGAAGTGGAGGTGTGCCTGTGTGGGAGGGAATCCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR CCA 72 bp AATTCACAATTGCCAAGTGTCCGACGGCCTCAGCCCTaGGCTGCTCCGTGTGGAAGCCTTGCATGGACGAGG +
Preference number: 3 (lower is better)
Translates to: NSQLPSVRRPQP*AAPCGSLAWTR
Trigger: CCTCGTCCATGCAAGGCTTCCACACGGAGCAGCCCAGGGCTGAGGCCGTCGGACACTTGGCAATTGTGAATT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR CCA 72 bp CAGACAGGCAGCCTCCCTGAAGCTGGCCCAGTCTCCTaGGCTGACTTTGGAAAGCAGAGCAGCTGTAGTGAC +
Preference number: 3 (lower is better)
Translates to: QTGSLPEAGPVS*ADFGKQSSCSD
Trigger: GTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCCAGGAGACTGGGCCAGCTTCAGGGAGGCTGCCTGTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR CCA 72 bp TGCCTACAAGTGGATGGAGGGAAAGCCAAGGTTCTCTaGCCTGCCACACTGAGACCCAGCAGCTGTCACCCT +
Preference number: 3 (lower is better)
Translates to: CLQVDGGKAKVL*PATLRPSSCHP
Trigger: AGGGTGACAGCTGCTGGGTCTCAGTGTGGCAGGCCAGAGAACCTTGGCTTTCCCTCCATCCACTTGTAGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR GCA 72 bp GCTGTTGTGGAAACTGACTCAACACCTTGGCAGGTGTaGAGTCACGAGAGCTTCAGCAGAGCCCCGAGACCA +
Preference number: 3 (lower is better)
Translates to: AVVETDSTPWQV*SHESFSRAPRP
Trigger: TGGTCTCGGGGCTCTGCTGAAGCTCTCGTGACTGCACACCTGCCAAGGTGTTGAGTCAGTTTCCACAACAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR TCA 72 bp GACCACAGTAACACTGAGGAGGGTGGGGAGGGACGGTaGAGACAACTCCTCACAGCTATTTTGGTTCCTGGG +
Preference number: 3 (lower is better)
Translates to: DHSNTEEGGEGR*RQLLTAILVPG
Trigger: CCCAGGAACCAAAATAGCTGTGAGGAGTTGTCTTCACCGTCCCTCCCCACCCTCCTCAGTGTTACTGTGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR TCA 72 bp CCCAGACGGTCACTCCAGAAAAGCTGTTGTGGAAACTaGCTCAACACCTTGGCAGGTGTGCAGTCACGAGAG +
Preference number: 3 (lower is better)
Translates to: PRRSLQKSCCGN*LNTLAGVQSRE
Trigger: CTCTCGTGACTGCACACCTGCCAAGGTGTTGAGTCAGTTTCCACAACAGCTTTTCTGGAGTGACCGTCTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR GCA 72 bp CCCATCCATGTAAGACTAACCCACAAAATTCACAATTaGCAAGTGTCCGACGGCCTCAGCCCTGGGCTGCTC +
Preference number: 3 (lower is better)
Translates to: PIHVRLTHKIHN*QVSDGLSPGLL
Trigger: GAGCAGCCCAGGGCTGAGGCCGTCGGACACTTGGCAATTGTGAATTTTGTGGGTTAGTCTTACATGGATGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR GCA 72 bp ACACAAGGTCCTTCTGTCTTCAAGGAGGCAGGAAGATaGCTCACCCTTACATCTCTGTGGCCTAAGGAGCCC +
Preference number: 3 (lower is better)
Translates to: TQGPSVFKEAGR*LTLTSLWPKEP
Trigger: GGGCTCCTTAGGCCACAGAGATGTAAGGGTGAGGCATCTTCCTGCCTCCTTGAAGACAGAAGGACCTTGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR CCA 72 bp GAGATTACTATCTGCATTGCCCTGGGTGCCTACAAGTaGATGGAGGGAAAGCCAAGGTTCTCTGGCCTGCCA +
Preference number: 3 (lower is better)
Translates to: EITICIALGAYK*MEGKPRFSGLP
Trigger: TGGCAGGCCAGAGAACCTTGGCTTTCCCTCCATCCACTTGTAGGCACCCAGGGCAATGCAGATAGTAATCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR CCA 72 bp GGGAGGGACGGTGAAGACAACTCCTCACAGCTATTTTaGTTCCTGGGATGTCTGTTCTTGACCTACCAGCCA +
Preference number: 3 (lower is better)
Translates to: GRDGEDNSSQLF*FLGCLFLTYQP
Trigger: TGGCTGGTAGGTCAAGAACAGACATCCCAGGAACCAAAATAGCTGTGAGGAGTTGTCTTCACCGTCCCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CAA 90 bp GTGTATGGAAGAGAAGCCTCAGCTTCCCAGACGGTCACTCCAGAAAAGCTGTTGCCACAAAATTCACAATaGCCAAGTGTCCGACGGCCT +
Preference number: 3 (lower is better)
Translates to: VYGREASASQTVTPEKLLPQNSQ*PSVRRP
Trigger: AGGCCGTCGGACACTTGGCAATTGTGAATTTTGTGG...CAACAGCTTTTCTGGAGTGACCGTCTGGGAAGCTGAGGCTTCTCTTCCATACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR TCA 72 bp AGCAGCTGTCACCCTGCACAAGCTTTAAGAGGTAGCTaGAGTGAGGCAAGCCAATGTAGTGGACCACACAAG +
Preference number: 3 (lower is better)
Translates to: SSCHPAQALRGS*SEASQCSGPHK
Trigger: CTTGTGTGGTCCACTACATTGGCTTGCCTCACTTCAGCTACCTCTTAAAGCTTGTGCAGGGTGACAGCTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR GCA 72 bp GTAGAAGGGAGAGATTACTATCTGCATTGCCCTGGGTaGCTACAAGTGGATGGAGGGAAAGCCAAGGTTCTC +
Preference number: 3 (lower is better)
Translates to: VEGRDYYLHCPG*LQVDGGKAKVL
Trigger: GAGAACCTTGGCTTTCCCTCCATCCACTTGTAGGCACCCAGGGCAATGCAGATAGTAATCTCTCCCTTCTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR CCA 72 bp GAAGGTAGAAGGGAGAGATTACTATCTGCATTGCCCTaGGTGCCTACAAGTGGATGGAGGGAAAGCCAAGGT +
Preference number: 3 (lower is better)
Translates to: EGRRERLLSALP*VPTSGWRESQG
Trigger: ACCTTGGCTTTCCCTCCATCCACTTGTAGGCACCCAGGGCAATGCAGATAGTAATCTCTCCCTTCTACCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CAA 90 bp GGGCTGACTTTGGAAAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGGCTCCTCACAGCTATTTaGGTTCCTGGGATGTCTGTT +
Preference number: 3 (lower is better)
Translates to: GLTLESRAAVVTVDMVRGLLTAI*VPGMSV
Trigger: AACAGACATCCCAGGAACCAAAATAGCTGTGAGGAG...CCCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR TCA 72 bp GTTCTTGACCTACCAGCCAGCTTAGGCAGGAAGAAGTaGAATCCCAAGGACTCACTTTTTGGCCAAGAGGGT +
Preference number: 3 (lower is better)
Translates to: VLDLPASLGRKK*NPKDSLFGQEG
Trigger: ACCCTCTTGGCCAAAAAGTGAGTCCTTGGGATTTCACTTCTTCCTGCCTAAGCTGGCTGGTAGGTCAAGAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR GCA 72 bp TATGACTCTTCCGTTTTCAGAGTCTCCAACTTCATCTaGACACTGTCCGAGGTGAAAGCCCACAGTGCACCT +
Preference number: 3 (lower is better)
Translates to: YDSSVFRVSNFI*TLSEVKAHSAP
Trigger: AGGTGCACTGTGGGCTTTCACCTCGGACAGTGTGCAGATGAAGTTGGAGACTCTGAAAACGGAAGAGTCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CAA 90 bp GGGCTGACTTTGGAAAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGGACTCCAGAAAAGCTGTaGTGGAAACTGACTCAACAC +
Preference number: 3 (lower is better)
Translates to: GLTLESRAAVVTVDMVRGTPEKL*WKLTQH
Trigger: GTGTTGAGTCAGTTTCCACAACAGCTTTTCTGGAGT...CCCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR TCA 72 bp CCTCACAGCTATTTTGGTTCCTGGGATGTCTGTTCTTaGCCTACCAGCCAGCTTAGGCAGGAAGAAGTGAAA +
Preference number: 3 (lower is better)
Translates to: PHSYFGSWDVCS*PTSQLRQEEVK
Trigger: TTTCACTTCTTCCTGCCTAAGCTGGCTGGTAGGTCAAGAACAGACATCCCAGGAACCAAAATAGCTGTGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR CCA 72 bp AGGCAGGAAGAAGTGAAATCCCAAGGACTCACTTTTTaGCCAAGAGGGTTCGAAGGAAATGGCACAAGAGCA +
Preference number: 3 (lower is better)
Translates to: RQEEVKSQGLTF*PRGFEGNGTRA
Trigger: TGCTCTTGTGCCATTTCCTTCGAACCCTCTTGGCCAAAAAGTGAGTCCTTGGGATTTCACTTCTTCCTGCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CAA 90 bp TCTGCATTGCCCTGGGTGCCTACAAGTGGATGGAGGGAAAGCCAAGGTTCTCTGTCCCTGTTCCTTCCTTaGAAGTTCTTTAATACAAAC +
Preference number: 3 (lower is better)
Translates to: SALPWVPTSGWRESQGSLSLFLP*KFFNTN
Trigger: GTTTGTATTAAAGAACTTCAAAGGAAGGAACAGGGA...CAGAGAACCTTGGCTTTCCCTCCATCCACTTGTAGGCACCCAGGGCAATGCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CAA 90 bp GTCTCCTGGGCTGACTTTGGAAAGCAGAGCAGCTGTAGTGACTGTAGATATGGTACATTTGTCAATTATTaGTGCAGGCTAGAGGCACCT +
Preference number: 3 (lower is better)
Translates to: VSWADFGKQSSCSDCRYGTFVNY*CRLEAP
Trigger: AGGTGCCTCTAGCCTGCACAAATAATTGACAAATGT...ACCATATCTACAGTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCCAGGAGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CAA 90 bp CTTAGGCAGGAAGAAGTGAAATCCCAAGGACTCACTTTTTGGCCAAGAGGGTTCACATTTGTCAATTATTaGTGCAGGCTAGAGGCACCT +
Preference number: 3 (lower is better)
Translates to: LRQEEVKSQGLTFWPRGFTFVNY*CRLEAP
Trigger: AGGTGCCTCTAGCCTGCACAAATAATTGACAAATGT...GAACCCTCTTGGCCAAAAAGTGAGTCCTTGGGATTTCACTTCTTCCTGCCTAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CAA 90 bp GGGCTGACTTTGGAAAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGGTCCCTGTTCCTTCCTTaGAAGTTCTTTAATACAAAC +
Preference number: 3 (lower is better)
Translates to: GLTLESRAAVVTVDMVRGSLFLP*KFFNTN
Trigger: GTTTGTATTAAAGAACTTCAAAGGAAGGAACAGGGA...CCCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CAA 90 bp CAGCTGTTTACTTTTTGGTTTCCTGACAAGGGGTCCTGCTTCCTAGCTCTGCTGTCCCAAAAGAATCCTTaGGGTGACATTTGTCAATTA +
Preference number: 3 (lower is better)
Translates to: QLFTFWFPDKGSCFLALLSQKNP*GDICQL
Trigger: TAATTGACAAATGTCACCCAAAGGATTCTTTTGGGA...CAGCAGAGCTAGGAAGCAGGACCCCTTGTCAGGAAACCAAAAAGTAAACAGCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CAA 90 bp GGATTTAAACACATGATCATCAGCACGAGATGTTTTCTTCCAGCTGTTTACTTTCCACAAAATTCACAATaGCCAAGTGTCCGACGGCCT +
Preference number: 3 (lower is better)
Translates to: GFKHMIISTRCFLPAVYFPQNSQ*PSVRRP
Trigger: AGGCCGTCGGACACTTGGCAATTGTGAATTTTGTGG...AAAGTAAACAGCTGGAAGAAAACATCTCGTGCTGATGATCATGTGTTTAAATCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR TCA 72 bp CAGGAATATATCACACACCCAGCTCAATGTTTAATTTaGGTGTGTGGGGGCTTAGAGGCTAGTTATGAAAGA +
Preference number: 3 (lower is better)
Translates to: QEYITHPAQCLI*VCGGLEASYER
Trigger: TCTTTCATAACTAGCCTCTAAGCCCCCACACACTCAAATTAAACATTGAGCTGGGTGTGTGATATATTCCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR-3UTR CAA 90 bp GGATTTAAACACATGATCATCAGCACGAGATGTTTTCTTCCAGCTGTTTACTTTACTCCAGAAAAGCTGTaGTGGAAACTGACTCAACAC +
Preference number: 3 (lower is better)
Translates to: GFKHMIISTRCFLPAVYFTPEKL*WKLTQH
Trigger: GTGTTGAGTCAGTTTCCACAACAGCTTTTCTGGAGT...AAAGTAAACAGCTGGAAGAAAACATCTCGTGCTGATGATCATGTGTTTAAATCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR CAA 72 bp GACGGCCTCAGCCCTGGGCTGCTCCGTGTGGAAGCCTaGCATGGACGAGGCCTGACTGGGCTGCTGCTCCTG +
Preference number: 4 (lower is better)
Translates to: DGLSPGLLRVEA*HGRGLTGLLLL
Trigger: CAGGAGCAGCAGCCCAGTCAGGCCTCGTCCATGCAAGGCTTCCACACGGAGCAGCCCAGGGCTGAGGCCGTC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp CCCTGGGCTGCTCCGTGTGGAAGCCTTGCATGGACGAGGCCTGACTGGGCTGCTAGGCCCTGTCTGGCCTaGTGTTCCTGTGCTCGGGGC +
Preference number: 4 (lower is better)
Translates to: PWAAPCGSLAWTRPDWAARPCLA*CSCARG
Trigger: GCCCCGAGCACAGGAACAGCAGGCCAGACAGGGCCT...AGCAGCCCAGTCAGGCCTCGTCCATGCAAGGCTTCCACACGGAGCAGCCCAGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp CGACCATGCGCCAAGGGGCACGTGGGCCTGCGGTCCAGCAAAGGCTGCATGGAGCAGGAGCTGTCTGTCTaGGTCGTCCATGGGCTCCCT +
Preference number: 4 (lower is better)
Translates to: RPCAKGHVGLRSSKGCMEQELSV*VVHGLP
Trigger: AGGGAGCCCATGGACGACCCAGACAGACAGCTCCTG...CTCCATGCAGCCTTTGCTGGACCGCAGGCCCACGTGCCCCTTGGCGCATGGTCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp GGGACTTGCCCAAGTGAGGAAGGCGCTGGCCCTCTCACAGACAGGCAGCCTCCCTCTCCAGGCCCTGTCTaGCCTGCTGTTCCTGTGCTC +
Preference number: 4 (lower is better)
Translates to: GTCPSEEGAGPLTDRQPPSPGPV*PAVPVL
Trigger: GAGCACAGGAACAGCAGGCCAGACAGGGCCTGGAGA...GGGAGGCTGCCTGTCTGTGAGAGGGCCAGCGCCTTCCTCACTTGGGCAAGTCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp GGGACTTGCCCAAGTGAGGAAGGCGCTGGCCCTCTCACAGACAGGCAGCCTCCCCCAGCAGAGCCTTGTTaGTGCTTTCCCACCGGGATC +
Preference number: 4 (lower is better)
Translates to: GTCPSEEGAGPLTDRQPPPAEPC*CFPTGI
Trigger: GATCCCGGTGGGAAAGCAGCAACAAGGCTCTGCTGG...GGGAGGCTGCCTGTCTGTGAGAGGGCCAGCGCCTTCCTCACTTGGGCAAGTCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp GGGACTTGCCCAAGTGAGGAAGGCGCTGGCCCTCTCACAGACAGGCAGCCTCCCAGCTTCTCCAGCCGCTaGATTTTCACCTGCAGGCCC +
Preference number: 4 (lower is better)
Translates to: GTCPSEEGAGPLTDRQPPSFSSR*IFTCRP
Trigger: GGGCCTGCAGGTGAAAATCCAGCGGCTGGAGAAGCT...GGGAGGCTGCCTGTCTGTGAGAGGGCCAGCGCCTTCCTCACTTGGGCAAGTCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp CCCTGGGCTGCTCCGTGTGGAAGCCTTGCATGGACGAGGCCTGACTGGGCTGCTAGCTTCTCCAGCCGCTaGATTTTCACCTGCAGGCCC +
Preference number: 4 (lower is better)
Translates to: PWAAPCGSLAWTRPDWAASFSSR*IFTCRP
Trigger: GGGCCTGCAGGTGAAAATCCAGCGGCTGGAGAAGCT...AGCAGCCCAGTCAGGCCTCGTCCATGCAAGGCTTCCACACGGAGCAGCCCAGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp GGGACTTGCCCAAGTGAGGAAGGCGCTGGCCCTCTCACAGACAGGCAGCCTCCCAGGTGGGTCTCCTGCTaGTTCATCAGCTCGCACATC +
Preference number: 4 (lower is better)
Translates to: GTCPSEEGAGPLTDRQPPRWVSC*FISSHI
Trigger: GATGTGCGAGCTGATGAAGCAGCAGGAGACCCACCT...GGGAGGCTGCCTGTCTGTGAGAGGGCCAGCGCCTTCCTCACTTGGGCAAGTCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp CGACCATGCGCCAAGGGGCACGTGGGCCTGCGGTCCAGCAAAGGCTGCATGGAGGCTCAGCATACTTCTTaGACAGTGCAGCCAGCTTCT +
Preference number: 4 (lower is better)
Translates to: RPCAKGHVGLRSSKGCMEAQHTS*TVQPAS
Trigger: AGAAGCTGGCTGCACTGTGCAAGAAGTATGCTGAGC...CTCCATGCAGCCTTTGCTGGACCGCAGGCCCACGTGCCCCTTGGCGCATGGTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp CGTGTGGAAGCCTTGCATGGACGAGGCCTGACTGGGCTGCTGCTCCTGTCCCAGTCCTGTGGCCTCCGATaGTCTCGGTCTCCAACTTCA +
Preference number: 4 (lower is better)
Translates to: RVEALHGRGLTGLLLLSQSCGLR*SRSPTS
Trigger: TGAAGTTGGAGACCGAGACCATCGGAGGCCACAGGA...CTGGGACAGGAGCAGCAGCCCAGTCAGGCCTCGTCCATGCAAGGCTTCCACACG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp AGGGACGAGAGCCCAAATCGCCCAAGTTCTGCTCACAAAAAGGAGGAGTCCAGGAGGCCCTGTCTGGCCTaGTGTTCCTGTGCTCGGGGC +
Preference number: 4 (lower is better)
Translates to: RDESPNRPSSAHKKEESRRPCLA*CSCARG
Trigger: GCCCCGAGCACAGGAACAGCAGGCCAGACAGGGCCT...CCTGGACTCCTCCTTTTTGTGAGCAGAACTTGGGCGATTTGGGCTCTCGTCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp CACACCTCTGAGATGGAGGTGAGGGGCAGGAGCCAAGAAACGACCATGCGCCAATCCTTCAGCATCTCCTaGGCCTGCTGGAGCTTGGCG +
Preference number: 4 (lower is better)
Translates to: HTSEMEVRGRSQETTMRQSFSIS*ACWSLA
Trigger: CGCCAAGCTCCAGCAGGCCCAGGAGATGCTGAAGGA...TTGGCGCATGGTCGTTTCTTGGCTCCTGCCCCTCACCTCCATCTCAGAGGTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp GAAACTGACTCAACACCTTGGCAGGTGTGCAGTCACGAGAGCTTCAGCAGAGCCCCTTGGAGGCAGTGGTaGCCTCTGGCCTCCGCTCAG +
Preference number: 4 (lower is better)
Translates to: ETDSTPWQVCSHESFSRAPWRQW*PLASAQ
Trigger: CTGAGCGGAGGCCAGAGGCCACCACTGCCTCCAAGG...GGCTCTGCTGAAGCTCTCGTGACTGCACACCTGCCAAGGTGTTGAGTCAGTTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp ACAAGAGCAGTCCTCAAAAACCACACCTCTGAGATGGAGGTGAGGGGCAGGAGCCAGGAGCCTGGCTTGTaGAACCTTCGGCTTCCGCCC +
Preference number: 4 (lower is better)
Translates to: TRAVLKNHTSEMEVRGRSQEPGL*NLRLPP
Trigger: GGGCGGAAGCCGAAGGTTCCACAAGCCAGGCTCCTG...GCTCCTGCCCCTCACCTCCATCTCAGAGGTGTGGTTTTTGAGGACTGCTCTTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp GAAACTGACTCAACACCTTGGCAGGTGTGCAGTCACGAGAGCTTCAGCAGAGCCCAGGAGCCTGGCTTGTaGAACCTTCGGCTTCCGCCC +
Preference number: 4 (lower is better)
Translates to: ETDSTPWQVCSHESFSRAQEPGL*NLRLPP
Trigger: GGGCGGAAGCCGAAGGTTCCACAAGCCAGGCTCCTG...GGCTCTGCTGAAGCTCTCGTGACTGCACACCTGCCAAGGTGTTGAGTCAGTTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp CCAAATCGCCCAAGTTCTGCTCACAAAAAGGAGGAGTCCAGGCCTGGGTGCTTTCCTTGGAGGCAGTGGTaGCCTCTGGCCTCCGCTCAG +
Preference number: 4 (lower is better)
Translates to: PNRPSSAHKKEESRPGCFPWRQW*PLASAQ
Trigger: CTGAGCGGAGGCCAGAGGCCACCACTGCCTCCAAGG...AAAGCACCCAGGCCTGGACTCCTCCTTTTTGTGAGCAGAACTTGGGCGATTTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR TCA 90 bp CAGACGGTCACTCCAGAAAAGCTGTTGTGGAAACTGACTCAACACCTTGGCAGGCAGAGGGCCCCAGGCTaGGCTGCTTTAGCTCGAGCC +
Preference number: 4 (lower is better)
Translates to: QTVTPEKLLWKLTQHLGRQRAPG*AALARA
Trigger: GGCTCGAGCTAAAGCAGCTCAGCCTGGGGCCCTCTG...CCTGCCAAGGTGTTGAGTCAGTTTCCACAACAGCTTTTCTGGAGTGACCGTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR TCA 90 bp GGTGTGCAGTCACGAGAGCTTCAGCAGAGCCCCGAGACCACAGTAACACTGAGGCCTGTACCCTCTTGTTaGGGTCATTGCGCTCGGTCT +
Preference number: 4 (lower is better)
Translates to: GVQSRELQQSPETTVTLRPVPSC*GHCARS
Trigger: AGACCGAGCGCAATGACCTCAACAAGAGGGTACAGG...CCTCAGTGTTACTGTGGTCTCGGGGCTCTGCTGAAGCTCTCGTGACTGCACACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp GTCTCCTGGGCTGACTTTGGAAAGCAGAGCAGCTGTAGTGACTGTAGATATGGTAGTGGGCTCACCCTGTaGTCCCTCCTCAGCCGGGCC +
Preference number: 4 (lower is better)
Translates to: VSWADFGKQSSCSDCRYGSGLTL*SLLSRA
Trigger: GGCCCGGCTGAGGAGGGAGCACAGGGTGAGCCCACT...ACCATATCTACAGTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCCAGGAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp ACAGCTATTTTGGTTCCTGGGATGTCTGTTCTTGACCTACCAGCCAGCTTAGGCAGTGGGCTCACCCTGTaGTCCCTCCTCAGCCGGGCC +
Preference number: 4 (lower is better)
Translates to: TAILVPGMSVLDLPASLGSGLTL*SLLSRA
Trigger: GGCCCGGCTGAGGAGGGAGCACAGGGTGAGCCCACT...GCCTAAGCTGGCTGGTAGGTCAAGAACAGACATCCCAGGAACCAAAATAGCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp ACAAGAGCAGTCCTCAAAAACCACACCTCTGAGATGGAGGTGAGGGGCAGGAGCAGCAAGGAGCGTCTGTaGCCCTTGGAGAGCTGGCTG +
Preference number: 4 (lower is better)
Translates to: TRAVLKNHTSEMEVRGRSSKERL*PLESWL
Trigger: CAGCCAGCTCTCCAAGGGCCACAGACGCTCCTTGCT...GCTCCTGCCCCTCACCTCCATCTCAGAGGTGTGGTTTTTGAGGACTGCTCTTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp TCAGTGTATGGAAGAGAAGCCTCAGCTTCCCAGACGGTCACTCCAGAAAAGCTGAGGCAGTGGCAGGGGTaGGCTCTCCAGGCCCTGTCT +
Preference number: 4 (lower is better)
Translates to: SVYGREASASQTVTPEKLRQWQG*ALQALS
Trigger: AGACAGGGCCTGGAGAGCCCACCCCTGCCACTGCCT...CAGCTTTTCTGGAGTGACCGTCTGGGAAGCTGAGGCTTCTCTTCCATACACTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR TCA 90 bp CAGCTGTTTACTTTTTGGTTTCCTGACAAGGGGTCCTGCTTCCTAGCTCTGCTGCAGAGGGCCCCAGGCTaGGCTGCTTTAGCTCGAGCC +
Preference number: 4 (lower is better)
Translates to: QLFTFWFPDKGSCFLALLQRAPG*AALARA
Trigger: GGCTCGAGCTAAAGCAGCTCAGCCTGGGGCCCTCTG...CAGCAGAGCTAGGAAGCAGGACCCCTTGTCAGGAAACCAAAAAGTAAACAGCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp TGGGCTGACTTTGGAAAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGGGCCCCAGGCTGAGCTaGTTTAGCTCGAGCCCCCTC +
Preference number: 4 (lower is better)
Translates to: WADFGKQSSCSDCRYGQRGPRLS*FSSSPL
Trigger: GAGGGGGCTCGAGCTAAAGCAGCTCAGCCTGGGGCC...CCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp TCTGCATTGCCCTGGGTGCCTACAAGTGGATGGAGGGAAAGCCAAGGTTCTCTGTCATTGCGCTCGGTCTaGAGTGCTCGGCACAGCTTC +
Preference number: 4 (lower is better)
Translates to: SALPWVPTSGWRESQGSLSLRSV*SARHSF
Trigger: GAAGCTGTGCCGAGCACTGCAGACCGAGCGCAATGA...CAGAGAACCTTGGCTTTCCCTCCATCCACTTGTAGGCACCCAGGGCAATGCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp GAAACTGACTCAACACCTTGGCAGGTGTGCAGTCACGAGAGCTTCAGCAGAGCCCAGGCTCCCCATTCCTaGCTGCATAGGTTCGGGACT +
Preference number: 4 (lower is better)
Translates to: ETDSTPWQVCSHESFSRAQAPHS*LHRFGT
Trigger: AGTCCCGAACCTATGCAGCCAGGAATGGGGAGCCTG...GGCTCTGCTGAAGCTCTCGTGACTGCACACCTGCCAAGGTGTTGAGTCAGTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp TCTGCATTGCCCTGGGTGCCTACAAGTGGATGGAGGGAAAGCCAAGGTTCTCTGAGCTCGCACATCCTCTaGGACTCCACCGCTTCCTTC +
Preference number: 4 (lower is better)
Translates to: SALPWVPTSGWRESQGSLSSHIL*DSTASF
Trigger: GAAGGAAGCGGTGGAGTCCCAGAGGATGTGCGAGCT...CAGAGAACCTTGGCTTTCCCTCCATCCACTTGTAGGCACCCAGGGCAATGCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp AGGGACGGTGAAGACAACTCCTCACAGCTATTTTGGTTCCTGGGATGTCTGTTCAGGCAGTGGCAGGGGTaGGCTCTCCAGGCCCTGTCT +
Preference number: 4 (lower is better)
Translates to: RDGEDNSSQLFWFLGCLFRQWQG*ALQALS
Trigger: AGACAGGGCCTGGAGAGCCCACCCCTGCCACTGCCT...GAACAGACATCCCAGGAACCAAAATAGCTGTGAGGAGTTGTCTTCACCGTCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR TCA 90 bp AGGGACGAGAGCCCAAATCGCCCAAGTTCTGCTCACAAAAAGGAGGAGTCCAGGGCTCGATCAACTTCTTaGGCCTCTCGGCTAGCTCCA +
Preference number: 4 (lower is better)
Translates to: RDESPNRPSSAHKKEESRARSTS*ASRLAP
Trigger: TGGAGCTAGCCGAGAGGCTCAAGAAGTTGATCGAGC...CCTGGACTCCTCCTTTTTGTGAGCAGAACTTGGGCGATTTGGGCTCTCGTCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp CACACCTCTGAGATGGAGGTGAGGGGCAGGAGCCAAGAAACGACCATGCGCCAAGCTCAGCATACTTCTTaGACAGTGCAGCCAGCTTCT +
Preference number: 4 (lower is better)
Translates to: HTSEMEVRGRSQETTMRQAQHTS*TVQPAS
Trigger: AGAAGCTGGCTGCACTGTGCAAGAAGTATGCTGAGC...TTGGCGCATGGTCGTTTCTTGGCTCCTGCCCCTCACCTCCATCTCAGAGGTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp CACACCTCTGAGATGGAGGTGAGGGGCAGGAGCCAAGAAACGACCATGCGCCAATGGCTCTGCTTCTTCTaGAGGAGCTTCATCTGCTTC +
Preference number: 4 (lower is better)
Translates to: HTSEMEVRGRSQETTMRQWLCFF*RSFICF
Trigger: GAAGCAGATGAAGCTCCTGCAGAAGAAGCAGAGCCA...TTGGCGCATGGTCGTTTCTTGGCTCCTGCCCCTCACCTCCATCTCAGAGGTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp AGGGACGAGAGCCCAAATCGCCCAAGTTCTGCTCACAAAAAGGAGGAGTCCAGGTGCACGAGCTGGCTCTaGTTCTTCTGCAGGAGCTTC +
Preference number: 4 (lower is better)
Translates to: RDESPNRPSSAHKKEESRCTSWL*FFCRSF
Trigger: GAAGCTCCTGCAGAAGAAGCAGAGCCAGCTCGTGCA...CCTGGACTCCTCCTTTTTGTGAGCAGAACTTGGGCGATTTGGGCTCTCGTCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp TCAGTGTATGGAAGAGAAGCCTCAGCTTCCCAGACGGTCACTCCAGAAAAGCTGTCCTTCTCTCGCTGGTaGCGCTCCTCTGCCTCCTTC +
Preference number: 4 (lower is better)
Translates to: SVYGREASASQTVTPEKLSFSRW*RSSASF
Trigger: GAAGGAGGCAGAGGAGCGGCACCAGCGAGAGAAGGA...CAGCTTTTCTGGAGTGACCGTCTGGGAAGCTGAGGCTTCTCTTCCATACACTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp ACAAGAGCAGTCCTCAAAAACCACACCTCTGAGATGGAGGTGAGGGGCAGGAGCGCAGAGCCTTGTTGCTaGTTTCCCACCGGGATCGAT +
Preference number: 4 (lower is better)
Translates to: TRAVLKNHTSEMEVRGRSAEPCC*FPTGID
Trigger: ATCGATCCCGGTGGGAAAGCAGCAACAAGGCTCTGC...GCTCCTGCCCCTCACCTCCATCTCAGAGGTGTGGTTTTTGAGGACTGCTCTTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp ACAGCTATTTTGGTTCCTGGGATGTCTGTTCTTGACCTACCAGCCAGCTTAGGCGCGCTCGGTCTGCAGTaGTCGGCACAGCTTCTCCAG +
Preference number: 4 (lower is better)
Translates to: TAILVPGMSVLDLPASLGALGLQ*SAQLLQ
Trigger: CTGGAGAAGCTGTGCCGAGCACTGCAGACCGAGCGC...GCCTAAGCTGGCTGGTAGGTCAAGAACAGACATCCCAGGAACCAAAATAGCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp TCTGCATTGCCCTGGGTGCCTACAAGTGGATGGAGGGAAAGCCAAGGTTCTCTGAGCCAGCTTCTCCTCTaGGGTACTCAGCGTGTTCAG +
Preference number: 4 (lower is better)
Translates to: SALPWVPTSGWRESQGSLSQLLL*GTQRVQ
Trigger: CTGAACACGCTGAGTACCCCAGAGGAGAAGCTGGCT...CAGAGAACCTTGGCTTTCCCTCCATCCACTTGTAGGCACCCAGGGCAATGCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp ACAAGAGCAGTCCTCAAAAACCACACCTCTGAGATGGAGGTGAGGGGCAGGAGCAGCCAGCTTCTCCTCTaGGGTACTCAGCGTGTTCAG +
Preference number: 4 (lower is better)
Translates to: TRAVLKNHTSEMEVRGRSSQLLL*GTQRVQ
Trigger: CTGAACACGCTGAGTACCCCAGAGGAGAAGCTGGCT...GCTCCTGCCCCTCACCTCCATCTCAGAGGTGTGGTTTTTGAGGACTGCTCTTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp GAAATATCTCATCTTCCCAAGCAGGATACCTTGGCACCCACATGGCAAAGGACCGGGCCTGCTGGAGCTTaGCGTCCACTAGCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: EISHLPKQDTLAPTWQRTGPAGA*RPLAAA
Trigger: AGCAGCAGCTAGTGGACGCCAAGCTCCAGCAGGCCC...GGTCCTTTGCCATGTGGGTGCCAAGGTATCCTGCTTGGGAAGATGAGATATTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp CCAAATCGCCCAAGTTCTGCTCACAAAAAGGAGGAGTCCAGGCCTGGGTGCTTTAGCTCGCACATCCTCTaGGACTCCACCGCTTCCTTC +
Preference number: 4 (lower is better)
Translates to: PNRPSSAHKKEESRPGCFSSHIL*DSTASF
Trigger: GAAGGAAGCGGTGGAGTCCCAGAGGATGTGCGAGCT...AAAGCACCCAGGCCTGGACTCCTCCTTTTTGTGAGCAGAACTTGGGCGATTTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp CAGACGGTCACTCCAGAAAAGCTGTTGTGGAAACTGACTCAACACCTTGGCAGGAGCGTCTGTGGCCCTTaGAGAGCTGGCTGGTTGAGC +
Preference number: 4 (lower is better)
Translates to: QTVTPEKLLWKLTQHLGRSVCGP*RAGWLS
Trigger: GCTCAACCAGCCAGCTCTCCAAGGGCCACAGACGCT...CCTGCCAAGGTGTTGAGTCAGTTTCCACAACAGCTTTTCTGGAGTGACCGTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp GGGCTGACTTTGGAAAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGGAGCGTCTGTGGCCCTTaGAGAGCTGGCTGGTTGAGC +
Preference number: 4 (lower is better)
Translates to: GLTLESRAAVVTVDMVRGSVCGP*RAGWLS
Trigger: GCTCAACCAGCCAGCTCTCCAAGGGCCACAGACGCT...CCCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp GACCTTGGGAGAAATTCCACAGGACAACAGATTCCAGCTGGAGATGGCAAAGCCTCTCCAGGCCCTGTCTaGCCTGCTGTTCCTGTGCTC +
Preference number: 4 (lower is better)
Translates to: DLGRNSTGQQIPAGDGKASPGPV*PAVPVL
Trigger: GAGCACAGGAACAGCAGGCCAGACAGGGCCTGGAGA...GGCTTTGCCATCTCCAGCTGGAATCTGTTGTCCTGTGGAATTTCTCCCAAGGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR CAA 72 bp GCAAAGGCTGCATGGAGAAGTGATGGGAACCAGTGGTaGCCTCCTAGGCTGAAGCCCATAGGCAAGCTTGTG +
Preference number: 4 (lower is better)
Translates to: AKAAWRSDGNQW*PPRLKPIGKLV
Trigger: CACAAGCTTGCCTATGGGCTTCAGCCTAGGAGGCAACCACTGGTTCCCATCACTTCTCCATGCAGCCTTTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR TCA 90 bp AGGGACGAGAGCCCAAATCGCCCAAGTTCTGCTCACAAAAAGGAGGAGTCCAGGTCTGCATCAGCAGAGTaGTCTCCTTCCCTAGACCCT +
Preference number: 4 (lower is better)
Translates to: RDESPNRPSSAHKKEESRSASAE*SPSLDP
Trigger: AGGGTCTAGGGAAGGAGATCACTCTGCTGATGCAGA...CCTGGACTCCTCCTTTTTGTGAGCAGAACTTGGGCGATTTGGGCTCTCGTCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR TCA 90 bp ACAGCTATTTTGGTTCCTGGGATGTCTGTTCTTGACCTACCAGCCAGCTTAGGCGGAGAGCTGGCTGGTTaGGCCCCAGGACTTTCAACC +
Preference number: 4 (lower is better)
Translates to: TAILVPGMSVLDLPASLGGELAG*APGLST
Trigger: GGTTGAAAGTCCTGGGGCTCAACCAGCCAGCTCTCC...GCCTAAGCTGGCTGGTAGGTCAAGAACAGACATCCCAGGAACCAAAATAGCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp CCAAATCGCCCAAGTTCTGCTCACAAAAAGGAGGAGTCCAGGCCTGGGTGCTTTCTCCCCATTCCTGGCTaGATAGGTTCGGGACTTCTC +
Preference number: 4 (lower is better)
Translates to: PNRPSSAHKKEESRPGCFLPIPG*IGSGLL
Trigger: GAGAAGTCCCGAACCTATGCAGCCAGGAATGGGGAG...AAAGCACCCAGGCCTGGACTCCTCCTTTTTGTGAGCAGAACTTGGGCGATTTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp CTGCCCCACAAAGACTCTGCCAGGGACACCATTCCCAGGTTAAGAGAAGCAATGACAGACTCTCAAGCTTaGTTCGGGCCAGGACAGCCT +
Preference number: 4 (lower is better)
Translates to: LPHKDSARDTIPRLREAMTDSQA*FGPGQP
Trigger: AGGCTGTCCTGGCCCGAAGCAAGCTTGAGAGTCTGT...CATTGCTTCTCTTAACCTGGGAATGGTGTCCCTGGCAGAGTCTTTGTGGGGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp GTCTCCTGGGCTGACTTTGGAAAGCAGAGCAGCTGTAGTGACTGTAGATATGGTTCCTTCTCTCGCTGGTaGCGCTCCTCTGCCTCCTTC +
Preference number: 4 (lower is better)
Translates to: VSWADFGKQSSCSDCRYGSFSRW*RSSASF
Trigger: GAAGGAGGCAGAGGAGCGGCACCAGCGAGAGAAGGA...ACCATATCTACAGTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCCAGGAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp CTGCCCCACAAAGACTCTGCCAGGGACACCATTCCCAGGTTAAGAGAAGCAATGGCAGAGCCTTGTTGCTaGTTTCCCACCGGGATCGAT +
Preference number: 4 (lower is better)
Translates to: LPHKDSARDTIPRLREAMAEPCC*FPTGID
Trigger: ATCGATCCCGGTGGGAAAGCAGCAACAAGGCTCTGC...CATTGCTTCTCTTAACCTGGGAATGGTGTCCCTGGCAGAGTCTTTGTGGGGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp TGTCAGCACAACTTCAAACAAGTATGGGTGGCAAAGGAAAGCAGTCATGGGGACGCGCTCGGTCTGCAGTaGTCGGCACAGCTTCTCCAG +
Preference number: 4 (lower is better)
Translates to: CQHNFKQVWVAKESSHGDALGLQ*SAQLLQ
Trigger: CTGGAGAAGCTGTGCCGAGCACTGCAGACCGAGCGC...GTCCCCATGACTGCTTTCCTTTGCCACCCATACTTGTTTGAAGTTGTGCTGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp AGGGACGGTGAAGACAACTCCTCACAGCTATTTTGGTTCCTGGGATGTCTGTTCCAGGAGCTGTCTGTCTaGGTCGTCCATGGGCTCCCT +
Preference number: 4 (lower is better)
Translates to: RDGEDNSSQLFWFLGCLFQELSV*VVHGLP
Trigger: AGGGAGCCCATGGACGACCCAGACAGACAGCTCCTG...GAACAGACATCCCAGGAACCAAAATAGCTGTGAGGAGTTGTCTTCACCGTCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp GAAATATCTCATCTTCCCAAGCAGGATACCTTGGCACCCACATGGCAAAGGACCTGTCTTCCGGCTCAGTaGGCTCACCCTGTGCTCCCT +
Preference number: 4 (lower is better)
Translates to: EISHLPKQDTLAPTWQRTCLPAQ*AHPVLP
Trigger: AGGGAGCACAGGGTGAGCCCACTGAGCCGGAAGACA...GGTCCTTTGCCATGTGGGTGCCAAGGTATCCTGCTTGGGAAGATGAGATATTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp CTGCCCCACAAAGACTCTGCCAGGGACACCATTCCCAGGTTAAGAGAAGCAATGGACGACTGGAATGCCTaGTTCAGGCTCCCCATTCCT +
Preference number: 4 (lower is better)
Translates to: LPHKDSARDTIPRLREAMDDWNA*FRLPIP
Trigger: AGGAATGGGGAGCCTGAACCAGGCATTCCAGTCGTC...CATTGCTTCTCTTAACCTGGGAATGGTGTCCCTGGCAGAGTCTTTGTGGGGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp AGGGACGAGAGCCCAAATCGCCCAAGTTCTGCTCACAAAAAGGAGGAGTCCAGGAGCTCCATATTCTCCTaGCGCAGCTTGGAGTTTCGC +
Preference number: 4 (lower is better)
Translates to: RDESPNRPSSAHKKEESRSSIFS*RSLEFR
Trigger: GCGAAACTCCAAGCTGCGCCAGGAGAATATGGAGCT...CCTGGACTCCTCCTTTTTGTGAGCAGAACTTGGGCGATTTGGGCTCTCGTCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp TGTCAGCACAACTTCAAACAAGTATGGGTGGCAAAGGAAAGCAGTCATGGGGACGGGCCTGCTGGAGCTTaGCGTCCACTAGCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: CQHNFKQVWVAKESSHGDGPAGA*RPLAAA
Trigger: AGCAGCAGCTAGTGGACGCCAAGCTCCAGCAGGCCC...GTCCCCATGACTGCTTTCCTTTGCCACCCATACTTGTTTGAAGTTGTGCTGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp GTCTCCTGGGCTGACTTTGGAAAGCAGAGCAGCTGTAGTGACTGTAGATATGGTATCTCCTGGGCCTGCTaGAGCTTGGCGTCCACTAGC +
Preference number: 4 (lower is better)
Translates to: VSWADFGKQSSCSDCRYGISWAC*SLASTS
Trigger: GCTAGTGGACGCCAAGCTCCAGCAGGCCCAGGAGAT...ACCATATCTACAGTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCCAGGAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp AAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGGGAGAAGGTAGAAGGATCTCCTGGGCCTGCTaGAGCTTGGCGTCCACTAGC +
Preference number: 4 (lower is better)
Translates to: KQSSCSDCRYGQRGEGRRISWAC*SLASTS
Trigger: GCTAGTGGACGCCAAGCTCCAGCAGGCCCAGGAGAT...CCTTCTACCTTCTCCCCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp AAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGGGAGAAGGTAGAAGGTCCTTCAGCATCTCCTaGGCCTGCTGGAGCTTGGCG +
Preference number: 4 (lower is better)
Translates to: KQSSCSDCRYGQRGEGRRSFSIS*ACWSLA
Trigger: CGCCAAGCTCCAGCAGGCCCAGGAGATGCTGAAGGA...CCTTCTACCTTCTCCCCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp GAAACTGACTCAACACCTTGGCAGGTGTGCAGTCACGAGAGCTTCAGCAGAGCCAGCTGCTGCTTTAGGTaGGTCTCCTGCTGCTTCATC +
Preference number: 4 (lower is better)
Translates to: ETDSTPWQVCSHESFSRASCCFR*VSCCFI
Trigger: GATGAAGCAGCAGGAGACCCACCTAAAGCAGCAGCT...GGCTCTGCTGAAGCTCTCGTGACTGCACACCTGCCAAGGTGTTGAGTCAGTTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp CCCTGGACTCCAAGCCATACCCACTGTGGTCCTCTAGAGAAAAAGCTAACAATCAGCAAGGAGCGTCTGTaGCCCTTGGAGAGCTGGCTG +
Preference number: 4 (lower is better)
Translates to: PWTPSHTHCGPLEKKLTISKERL*PLESWL
Trigger: CAGCCAGCTCTCCAAGGGCCACAGACGCTCCTTGCT...GATTGTTAGCTTTTTCTCTAGAGGACCACAGTGGGTATGGCTTGGAGTCCAGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR CAA 72 bp GCCTCAGCTTCCCAGACGGTCACTCCAGAAAAGCTGTaGTGGAAACTGACTCAACACCTTGGCAGGTGTGCA +
Preference number: 4 (lower is better)
Translates to: ASASQTVTPEKL*WKLTQHLGRCA
Trigger: TGCACACCTGCCAAGGTGTTGAGTCAGTTTCCACAACAGCTTTTCTGGAGTGACCGTCTGGGAAGCTGAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp ACAAGAGCAGTCCTCAAAAACCACACCTCTGAGATGGAGGTGAGGGGCAGGAGCTGGCTCTGCTTCTTCTaGAGGAGCTTCATCTGCTTC +
Preference number: 4 (lower is better)
Translates to: TRAVLKNHTSEMEVRGRSWLCFF*RSFICF
Trigger: GAAGCAGATGAAGCTCCTGCAGAAGAAGCAGAGCCA...GCTCCTGCCCCTCACCTCCATCTCAGAGGTGTGGTTTTTGAGGACTGCTCTTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp GTGTATGGAAGAGAAGCCTCAGCTTCCCAGACGGTCACTCCAGAAAAGCTGTTGAGATGGTCCTTCTCCTaGACGAGCTGGCTCTGCTTC +
Preference number: 4 (lower is better)
Translates to: VYGREASASQTVTPEKLLRWSFS*TSWLCF
Trigger: GAAGCAGAGCCAGCTCGTGCAGGAGAAGGACCATCT...CAACAGCTTTTCTGGAGTGACCGTCTGGGAAGCTGAGGCTTCTCTTCCATACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp AAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGGGAGAAGGTAGAAGGCAGGCTCCCCATTCCTaGCTGCATAGGTTCGGGACT +
Preference number: 4 (lower is better)
Translates to: KQSSCSDCRYGQRGEGRRQAPHS*LHRFGT
Trigger: AGTCCCGAACCTATGCAGCCAGGAATGGGGAGCCTG...CCTTCTACCTTCTCCCCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp TCAGTGTATGGAAGAGAAGCCTCAGCTTCCCAGACGGTCACTCCAGAAAAGCTGGACGACTGGAATGCCTaGTTCAGGCTCCCCATTCCT +
Preference number: 4 (lower is better)
Translates to: SVYGREASASQTVTPEKLDDWNA*FRLPIP
Trigger: AGGAATGGGGAGCCTGAACCAGGCATTCCAGTCGTC...CAGCTTTTCTGGAGTGACCGTCTGGGAAGCTGAGGCTTCTCTTCCATACACTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp CTGCCCCACAAAGACTCTGCCAGGGACACCATTCCCAGGTTAAGAGAAGCAATGTTTCTTCTTCTCCTGTaGCCTCCGATGGTCTCGGTC +
Preference number: 4 (lower is better)
Translates to: LPHKDSARDTIPRLREAMFLLLL*PPMVSV
Trigger: GACCGAGACCATCGGAGGCCACAGGAGAAGAAGAAA...CATTGCTTCTCTTAACCTGGGAATGGTGTCCCTGGCAGAGTCTTTGTGGGGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR CAA 72 bp AGGGGAGAAGGTAGAAGGGAGAGATTACTATCTGCATaGCCCTGGGTGCCTACAAGTGGATGGAGGGAAAGC +
Preference number: 4 (lower is better)
Translates to: RGEGRRERLLSA*PWVPTSGWRES
Trigger: GCTTTCCCTCCATCCACTTGTAGGCACCCAGGGCAATGCAGATAGTAATCTCTCCCTTCTACCTTCTCCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR TCA 90 bp AGGGACGGTGAAGACAACTCCTCACAGCTATTTTGGTTCCTGGGATGTCTGTTCGCTCGATCAACTTCTTaGGCCTCTCGGCTAGCTCCA +
Preference number: 4 (lower is better)
Translates to: RDGEDNSSQLFWFLGCLFARSTS*ASRLAP
Trigger: TGGAGCTAGCCGAGAGGCTCAAGAAGTTGATCGAGC...GAACAGACATCCCAGGAACCAAAATAGCTGTGAGGAGTTGTCTTCACCGTCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR TCA 90 bp GTCTCCTGGGCTGACTTTGGAAAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCCTGTACCCTCTTGTTaGGGTCATTGCGCTCGGTCT +
Preference number: 4 (lower is better)
Translates to: VSWADFGKQSSCSDCRYGPVPSC*GHCARS
Trigger: AGACCGAGCGCAATGACCTCAACAAGAGGGTACAGG...ACCATATCTACAGTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCCAGGAGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp CTGCCCCACAAAGACTCTGCCAGGGACACCATTCCCAGGTTAAGAGAAGCAATGATACTTCTTGCACAGTaGAGCCAGCTTCTCCTCTGG +
Preference number: 4 (lower is better)
Translates to: LPHKDSARDTIPRLREAMILLAQ*SQLLLW
Trigger: CCAGAGGAGAAGCTGGCTGCACTGTGCAAGAAGTAT...CATTGCTTCTCTTAACCTGGGAATGGTGTCCCTGGCAGAGTCTTTGTGGGGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp CAGCTGTTTACTTTTTGGTTTCCTGACAAGGGGTCCTGCTTCCTAGCTCTGCTGTGCACGAGCTGGCTCTaGTTCTTCTGCAGGAGCTTC +
Preference number: 4 (lower is better)
Translates to: QLFTFWFPDKGSCFLALLCTSWL*FFCRSF
Trigger: GAAGCTCCTGCAGAAGAAGCAGAGCCAGCTCGTGCA...CAGCAGAGCTAGGAAGCAGGACCCCTTGTCAGGAAACCAAAAAGTAAACAGCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp AAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGGGAGAAGGTAGAAGGAGATGGTCCTTCTCCTaGACGAGCTGGCTCTGCTTC +
Preference number: 4 (lower is better)
Translates to: KQSSCSDCRYGQRGEGRRRWSFS*TSWLCF
Trigger: GAAGCAGAGCCAGCTCGTGCAGGAGAAGGACCATCT...CCTTCTACCTTCTCCCCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp ACAGCTATTTTGGTTCCTGGGATGTCTGTTCTTGACCTACCAGCCAGCTTAGGCACAGACTCTCAAGCTTaGTTCGGGCCAGGACAGCCT +
Preference number: 4 (lower is better)
Translates to: TAILVPGMSVLDLPASLGTDSQA*FGPGQP
Trigger: AGGCTGTCCTGGCCCGAAGCAAGCTTGAGAGTCTGT...GCCTAAGCTGGCTGGTAGGTCAAGAACAGACATCCCAGGAACCAAAATAGCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp AGGGACGGTGAAGACAACTCCTCACAGCTATTTTGGTTCCTGGGATGTCTGTTCAGGTGGGTCTCCTGCTaGTTCATCAGCTCGCACATC +
Preference number: 4 (lower is better)
Translates to: RDGEDNSSQLFWFLGCLFRWVSC*FISSHI
Trigger: GATGTGCGAGCTGATGAAGCAGCAGGAGACCCACCT...GAACAGACATCCCAGGAACCAAAATAGCTGTGAGGAGTTGTCTTCACCGTCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp CAGGAAGAAGTGAAATCCCAAGGACTCACTTTTTGGCCAAGAGGGTTCGAAGGACCAGCAGAGCCTTGTTaGTGCTTTCCCACCGGGATC +
Preference number: 4 (lower is better)
Translates to: QEEVKSQGLTFWPRGFEGPAEPC*CFPTGI
Trigger: GATCCCGGTGGGAAAGCAGCAACAAGGCTCTGCTGG...TCCTTCGAACCCTCTTGGCCAAAAAGTGAGTCCTTGGGATTTCACTTCTTCCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp AGGGACGGTGAAGACAACTCCTCACAGCTATTTTGGTTCCTGGGATGTCTGTTCCGCTGGATTTTCACCTaGAGGCCCTCCAGCTCTTTG +
Preference number: 4 (lower is better)
Translates to: RDGEDNSSQLFWFLGCLFRWIFT*RPSSSL
Trigger: CAAAGAGCTGGAGGGCCTGCAGGTGAAAATCCAGCG...GAACAGACATCCCAGGAACCAAAATAGCTGTGAGGAGTTGTCTTCACCGTCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp AGGGACGGTGAAGACAACTCCTCACAGCTATTTTGGTTCCTGGGATGTCTGTTCTCCTGTGGCCTCCGATaGTCTCGGTCTCCAACTTCA +
Preference number: 4 (lower is better)
Translates to: RDGEDNSSQLFWFLGCLFSCGLR*SRSPTS
Trigger: TGAAGTTGGAGACCGAGACCATCGGAGGCCACAGGA...GAACAGACATCCCAGGAACCAAAATAGCTGTGAGGAGTTGTCTTCACCGTCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp AGGGACGGTGAAGACAACTCCTCACAGCTATTTTGGTTCCTGGGATGTCTGTTCTTCTCCTGCACGAGCTaGCTCTGCTTCTTCTGCAGG +
Preference number: 4 (lower is better)
Translates to: RDGEDNSSQLFWFLGCLFFSCTS*LCFFCR
Trigger: CCTGCAGAAGAAGCAGAGCCAGCTCGTGCAGGAGAA...GAACAGACATCCCAGGAACCAAAATAGCTGTGAGGAGTTGTCTTCACCGTCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR TCA 90 bp TGGGCTGACTTTGGAAAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGTCTGCATCAGCAGAGTaGTCTCCTTCCCTAGACCCT +
Preference number: 4 (lower is better)
Translates to: WADFGKQSSCSDCRYGQRSASAE*SPSLDP
Trigger: AGGGTCTAGGGAAGGAGATCACTCTGCTGATGCAGA...CCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp GTGTATGGAAGAGAAGCCTCAGCTTCCCAGACGGTCACTCCAGAAAAGCTGTTGAGCTTCATCTGCTTCTaGGAGTTCCGATGCTCTTCC +
Preference number: 4 (lower is better)
Translates to: VYGREASASQTVTPEKLLSFICF*EFRCSS
Trigger: GGAAGAGCATCGGAACTCGCAGAAGCAGATGAAGCT...CAACAGCTTTTCTGGAGTGACCGTCTGGGAAGCTGAGGCTTCTCTTCCATACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp AGGGACGGTGAAGACAACTCCTCACAGCTATTTTGGTTCCTGGGATGTCTGTTCTGCAGGAGCTTCATCTaGTTCTGCGAGTTCCGATGC +
Preference number: 4 (lower is better)
Translates to: RDGEDNSSQLFWFLGCLFCRSFI*FCEFRC
Trigger: GCATCGGAACTCGCAGAAGCAGATGAAGCTCCTGCA...GAACAGACATCCCAGGAACCAAAATAGCTGTGAGGAGTTGTCTTCACCGTCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp AAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGGGAGAAGGTAGAAGGTGCAGGAGCTTCATCTaGTTCTGCGAGTTCCGATGC +
Preference number: 4 (lower is better)
Translates to: KQSSCSDCRYGQRGEGRRCRSFI*FCEFRC
Trigger: GCATCGGAACTCGCAGAAGCAGATGAAGCTCCTGCA...CCTTCTACCTTCTCCCCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp CCAAATCGCCCAAGTTCTGCTCACAAAAAGGAGGAGTCCAGGCCTGGGTGCTTTTCCACTAGCTGCTGCTaGAGGTCCTTATGTTTGAAG +
Preference number: 4 (lower is better)
Translates to: PNRPSSAHKKEESRPGCFSTSCC*RSLCLK
Trigger: CTTCAAACATAAGGACCTGCAGCAGCAGCTAGTGGA...AAAGCACCCAGGCCTGGACTCCTCCTTTTTGTGAGCAGAACTTGGGCGATTTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp GAAATATCTCATCTTCCCAAGCAGGATACCTTGGCACCCACATGGCAAAGGACCGCGTCCACTAGCTGCTaGTGCAGGTCCTTATGTTTG +
Preference number: 4 (lower is better)
Translates to: EISHLPKQDTLAPTWQRTASTSC*CRSLCL
Trigger: CAAACATAAGGACCTGCAGCAGCAGCTAGTGGACGC...GGTCCTTTGCCATGTGGGTGCCAAGGTATCCTGCTTGGGAAGATGAGATATTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp ACAGCTATTTTGGTTCCTGGGATGTCTGTTCTTGACCTACCAGCCAGCTTAGGCGCGTCCACTAGCTGCTaGTGCAGGTCCTTATGTTTG +
Preference number: 4 (lower is better)
Translates to: TAILVPGMSVLDLPASLGASTSC*CRSLCL
Trigger: CAAACATAAGGACCTGCAGCAGCAGCTAGTGGACGC...GCCTAAGCTGGCTGGTAGGTCAAGAACAGACATCCCAGGAACCAAAATAGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp TGTCAGCACAACTTCAAACAAGTATGGGTGGCAAAGGAAAGCAGTCATGGGGACCGCTGGATTTTCACCTaGAGGCCCTCCAGCTCTTTG +
Preference number: 4 (lower is better)
Translates to: CQHNFKQVWVAKESSHGDRWIFT*RPSSSL
Trigger: CAAAGAGCTGGAGGGCCTGCAGGTGAAAATCCAGCG...GTCCCCATGACTGCTTTCCTTTGCCACCCATACTTGTTTGAAGTTGTGCTGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp AAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGGGAGAAGGTAGAAGGTTTCTTCTTCTCCTGTaGCCTCCGATGGTCTCGGTC +
Preference number: 4 (lower is better)
Translates to: KQSSCSDCRYGQRGEGRRFLLLL*PPMVSV
Trigger: GACCGAGACCATCGGAGGCCACAGGAGAAGAAGAAA...CCTTCTACCTTCTCCCCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp CAGGAAGAAGTGAAATCCCAAGGACTCACTTTTTGGCCAAGAGGGTTCGAAGGATTCTCCTGCACGAGCTaGCTCTGCTTCTTCTGCAGG +
Preference number: 4 (lower is better)
Translates to: QEEVKSQGLTFWPRGFEGFSCTS*LCFFCR
Trigger: CCTGCAGAAGAAGCAGAGCCAGCTCGTGCAGGAGAA...TCCTTCGAACCCTCTTGGCCAAAAAGTGAGTCCTTGGGATTTCACTTCTTCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp GAAATATCTCATCTTCCCAAGCAGGATACCTTGGCACCCACATGGCAAAGGACCTCTCCTGGCGCAGCTTaGAGTTTCGCTCGTTATGCT +
Preference number: 4 (lower is better)
Translates to: EISHLPKQDTLAPTWQRTSPGAA*SFARYA
Trigger: AGCATAACGAGCGAAACTCCAAGCTGCGCCAGGAGA...GGTCCTTTGCCATGTGGGTGCCAAGGTATCCTGCTTGGGAAGATGAGATATTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp ACAGCTATTTTGGTTCCTGGGATGTCTGTTCTTGACCTACCAGCCAGCTTAGGCAGCTCCATATTCTCCTaGCGCAGCTTGGAGTTTCGC +
Preference number: 4 (lower is better)
Translates to: TAILVPGMSVLDLPASLGSSIFS*RSLEFR
Trigger: GCGAAACTCCAAGCTGCGCCAGGAGAATATGGAGCT...GCCTAAGCTGGCTGGTAGGTCAAGAACAGACATCCCAGGAACCAAAATAGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR CAA 72 bp TTCTCTGAAATATCTCATCTTCCCAAGCAGGATACCTaGGCACCCACATGGCAAAGGACCCTGACAGGGTGG +
Preference number: 4 (lower is better)
Translates to: FSEISHLPKQDT*APTWQRTLTGW
Trigger: CCACCCTGTCAGGGTCCTTTGCCATGTGGGTGCCAAGGTATCCTGCTTGGGAAGATGAGATATTTCAGAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp AAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGGGAGAAGGTAGAAGGATACTTCTTGCACAGTaGAGCCAGCTTCTCCTCTGG +
Preference number: 4 (lower is better)
Translates to: KQSSCSDCRYGQRGEGRRILLAQ*SQLLLW
Trigger: CCAGAGGAGAAGCTGGCTGCACTGTGCAAGAAGTAT...CCTTCTACCTTCTCCCCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp CTTAGGCAGGAAGAAGTGAAATCCCAAGGACTCACTTTTTGGCCAAGAGGGTTCTTTAGGTGGGTCTCCTaGTGCTTCATCAGCTCGCAC +
Preference number: 4 (lower is better)
Translates to: LRQEEVKSQGLTFWPRGFFRWVS*CFISSH
Trigger: GTGCGAGCTGATGAAGCAGCAGGAGACCCACCTAAA...GAACCCTCTTGGCCAAAAAGTGAGTCCTTGGGATTTCACTTCTTCCTGCCTAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp TGTCAGCACAACTTCAAACAAGTATGGGTGGCAAAGGAAAGCAGTCATGGGGACTCTCCTGGCGCAGCTTaGAGTTTCGCTCGTTATGCT +
Preference number: 4 (lower is better)
Translates to: CQHNFKQVWVAKESSHGDSPGAA*SFARYA
Trigger: AGCATAACGAGCGAAACTCCAAGCTGCGCCAGGAGA...GTCCCCATGACTGCTTTCCTTTGCCACCCATACTTGTTTGAAGTTGTGCTGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR TCA 90 bp TGGGCTGACTTTGGAAAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGTGTCACCTGGAAGTGTaGAGTCACTTCTTTGCGCTT +
Preference number: 4 (lower is better)
Translates to: WADFGKQSSCSDCRYGQRCHLEV*SHFFAL
Trigger: AAGCGCAAAGAAGTGACTTCACACTTCCAGGTGACA...CCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR TCA 90 bp GAAATATCTCATCTTCCCAAGCAGGATACCTTGGCACCCACATGGCAAAGGACCTGTTCCATCTGCAGCTaGATGTCATTCAGTGTCACC +
Preference number: 4 (lower is better)
Translates to: EISHLPKQDTLAPTWQRTCSICS*MSFSVT
Trigger: GGTGACACTGAATGACATTCAGCTGCAGATGGAACA...GGTCCTTTGCCATGTGGGTGCCAAGGTATCCTGCTTGGGAAGATGAGATATTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp GGATTTAAACACATGATCATCAGCACGAGATGTTTTCTTCCAGCTGTTTACTTTGGCCCCAGGCTGAGCTaGTTTAGCTCGAGCCCCCTC +
Preference number: 4 (lower is better)
Translates to: GFKHMIISTRCFLPAVYFGPRLS*FSSSPL
Trigger: GAGGGGGCTCGAGCTAAAGCAGCTCAGCCTGGGGCC...AAAGTAAACAGCTGGAAGAAAACATCTCGTGCTGATGATCATGTGTTTAAATCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp GAAACTGACTCAACACCTTGGCAGGTGTGCAGTCACGAGAGCTTCAGCAGAGCCACACTTCACTGCTTTTaGAAAGTGTGTTCTGGAACT +
Preference number: 4 (lower is better)
Translates to: ETDSTPWQVCSHESFSRATLHCF*KVCSGT
Trigger: AGTTCCAGAACACACTTTCCAAAAGCAGTGAAGTGT...GGCTCTGCTGAAGCTCTCGTGACTGCACACCTGCCAAGGTGTTGAGTCAGTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp GTGTATGGAAGAGAAGCCTCAGCTTCCCAGACGGTCACTCCAGAAAAGCTGTTGGGGATCGATACATGGTaGTTTCTTTCTCCAGCTTCT +
Preference number: 4 (lower is better)
Translates to: VYGREASASQTVTPEKLLGIDTW*FLSPAS
Trigger: AGAAGCTGGAGAAAGAAACCACCATGTATCGATCCC...CAACAGCTTTTCTGGAGTGACCGTCTGGGAAGCTGAGGCTTCTCTTCCATACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp AAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGGGAGAAGGTAGAAGGACCGGGATCGATACATaGTGGTTTCTTTCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: KQSSCSDCRYGQRGEGRRTGIDT*WFLSPA
Trigger: AGCTGGAGAAAGAAACCACCATGTATCGATCCCGGT...CCTTCTACCTTCTCCCCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp CTTAGGCAGGAAGAAGTGAAATCCCAAGGACTCACTTTTTGGCCAAGAGGGTTCTCCACTAGCTGCTGCTaGAGGTCCTTATGTTTGAAG +
Preference number: 4 (lower is better)
Translates to: LRQEEVKSQGLTFWPRGFSTSCC*RSLCLK
Trigger: CTTCAAACATAAGGACCTGCAGCAGCAGCTAGTGGA...GAACCCTCTTGGCCAAAAAGTGAGTCCTTGGGATTTCACTTCTTCCTGCCTAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp CTTAGGCAGGAAGAAGTGAAATCCCAAGGACTCACTTTTTGGCCAAGAGGGTTCACCGGGATCGATACATaGTGGTTTCTTTCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: LRQEEVKSQGLTFWPRGFTGIDT*WFLSPA
Trigger: AGCTGGAGAAAGAAACCACCATGTATCGATCCCGGT...GAACCCTCTTGGCCAAAAAGTGAGTCCTTGGGATTTCACTTCTTCCTGCCTAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR TCA 90 bp TGGGCTGACTTTGGAAAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGGCAGGTCCTTATGTTTaGAGACTTTGTCGATATGCT +
Preference number: 4 (lower is better)
Translates to: WADFGKQSSCSDCRYGQRAGPYV*RLCRYA
Trigger: AGCATATCGACAAAGTCTTCAAACATAAGGACCTGC...CCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR TCA 90 bp GGATTTAAACACATGATCATCAGCACGAGATGTTTTCTTCCAGCTGTTTACTTTGGAGAGCTGGCTGGTTaGGCCCCAGGACTTTCAACC +
Preference number: 4 (lower is better)
Translates to: GFKHMIISTRCFLPAVYFGELAG*APGLST
Trigger: GGTTGAAAGTCCTGGGGCTCAACCAGCCAGCTCTCC...AAAGTAAACAGCTGGAAGAAAACATCTCGTGCTGATGATCATGTGTTTAAATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp TGGGCTGACTTTGGAAAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGTCATTCAGTGTCACCTaGAAGTGTGAAGTCACTTCT +
Preference number: 4 (lower is better)
Translates to: WADFGKQSSCSDCRYGQRSFSVT*KCEVTS
Trigger: AGAAGTGACTTCACACTTCCAGGTGACACTGAATGA...CCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp TGTCAGCACAACTTCAAACAAGTATGGGTGGCAAAGGAAAGCAGTCATGGGGACGGGATCGATACATGGTaGTTTCTTTCTCCAGCTTCT +
Preference number: 4 (lower is better)
Translates to: CQHNFKQVWVAKESSHGDGIDTW*FLSPAS
Trigger: AGAAGCTGGAGAAAGAAACCACCATGTATCGATCCC...GTCCCCATGACTGCTTTCCTTTGCCACCCATACTTGTTTGAAGTTGTGCTGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp GGACTATTTAATGTAAAATTCATCAATAGCAAGTCCCTGGCTGCTGCCAATTCCTTTAGGTGGGTCTCCTaGTGCTTCATCAGCTCGCAC +
Preference number: 4 (lower is better)
Translates to: GLFNVKFINSKSLAAANSFRWVS*CFISSH
Trigger: GTGCGAGCTGATGAAGCAGCAGGAGACCCACCTAAA...GGAATTGGCAGCAGCCAGGGACTTGCTATTGATGAATTTTACATTAAATAGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp GGATTTAAACACATGATCATCAGCACGAGATGTTTTCTTCCAGCTGTTTACTTTTCATTGCGCTCGGTCTaGAGTGCTCGGCACAGCTTC +
Preference number: 4 (lower is better)
Translates to: GFKHMIISTRCFLPAVYFSLRSV*SARHSF
Trigger: GAAGCTGTGCCGAGCACTGCAGACCGAGCGCAATGA...AAAGTAAACAGCTGGAAGAAAACATCTCGTGCTGATGATCATGTGTTTAAATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp CTTAGGCAGGAAGAAGTGAAATCCCAAGGACTCACTTTTTGGCCAAGAGGGTTCTCATTCAGTGTCACCTaGAAGTGTGAAGTCACTTCT +
Preference number: 4 (lower is better)
Translates to: LRQEEVKSQGLTFWPRGFSFSVT*KCEVTS
Trigger: AGAAGTGACTTCACACTTCCAGGTGACACTGAATGA...GAACCCTCTTGGCCAAAAAGTGAGTCCTTGGGATTTCACTTCTTCCTGCCTAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp TGTCAGCACAACTTCAAACAAGTATGGGTGGCAAAGGAAAGCAGTCATGGGGACACACTTCACTGCTTTTaGAAAGTGTGTTCTGGAACT +
Preference number: 4 (lower is better)
Translates to: CQHNFKQVWVAKESSHGDTLHCF*KVCSGT
Trigger: AGTTCCAGAACACACTTTCCAAAAGCAGTGAAGTGT...GTCCCCATGACTGCTTTCCTTTGCCACCCATACTTGTTTGAAGTTGTGCTGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR TCA 90 bp GGACTATTTAATGTAAAATTCATCAATAGCAAGTCCCTGGCTGCTGCCAATTCCTGTTCCATCTGCAGCTaGATGTCATTCAGTGTCACC +
Preference number: 4 (lower is better)
Translates to: GLFNVKFINSKSLAAANSCSICS*MSFSVT
Trigger: GGTGACACTGAATGACATTCAGCTGCAGATGGAACA...GGAATTGGCAGCAGCCAGGGACTTGCTATTGATGAATTTTACATTAAATAGTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CCA 90 bp GGATTTAAACACATGATCATCAGCACGAGATGTTTTCTTCCAGCTGTTTACTTTAGCTGCTGCTTTAGGTaGGTCTCCTGCTGCTTCATC +
Preference number: 4 (lower is better)
Translates to: GFKHMIISTRCFLPAVYFSCCFR*VSCCFI
Trigger: GATGAAGCAGCAGGAGACCCACCTAAAGCAGCAGCT...AAAGTAAACAGCTGGAAGAAAACATCTCGTGCTGATGATCATGTGTTTAAATCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR GCA 90 bp GGATTTAAACACATGATCATCAGCACGAGATGTTTTCTTCCAGCTGTTTACTTTAGCTTCATCTGCTTCTaGGAGTTCCGATGCTCTTCC +
Preference number: 4 (lower is better)
Translates to: GFKHMIISTRCFLPAVYFSFICF*EFRCSS
Trigger: GGAAGAGCATCGGAACTCGCAGAAGCAGATGAAGCT...AAAGTAAACAGCTGGAAGAAAACATCTCGTGCTGATGATCATGTGTTTAAATCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR TCA 90 bp ATTTCTGGATTTAAACACATGATCATCAGCACGAGATGTTTTCTTCCAGCTGTTGCAGGTCCTTATGTTTaGAGACTTTGTCGATATGCT +
Preference number: 4 (lower is better)
Translates to: ISGFKHMIISTRCFLPAVAGPYV*RLCRYA
Trigger: AGCATATCGACAAAGTCTTCAAACATAAGGACCTGC...AACAGCTGGAAGAAAACATCTCGTGCTGATGATCATGTGTTTAAATCCAGAAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
3UTR CAA 72 bp CTGAGGACCACTGCTAGAGTATCCCTGTTCCTTCCTTaGAAGTTCTTTAATACAAACTCTTATGCAAAACAA +
Preference number: 4 (lower is better)
Translates to: LRTTARVSLFLP*KFFNTNSYAKQ
Trigger: TTGTTTTGCATAAGAGTTTGTATTAAAGAACTTCAAAGGAAGGAACAGGGATACTCTAGCAGTGGTCCTCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS CCA 90 bp GAACCTTCGGCTTCCGCCCCAGGAGCTGTCTGTCTGGGTCGTCCATaGGCTCCCTCCGGTCCTGCTTCCCGTTGCCCCGGGCTGCCCTTC +
Preference number: 5 (lower is better)
Translates to: EPSASAPGAVCLGRP*APSGPASRCPGLPF
Trigger: GAAGGGCAGCCCGGGGCAACGGGAAGCAGGACCGGAGGGAGCCCATGGACGACCCAGACAGACAGCTCCTGGGGCGGAAGCCGAAGGTTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000130017.2
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS CCA 90 bp CCTGGCTTGTGGAACCTTCGGCTTCCGCCCCAGGAGCTGTCTGTCTaGGTCGTCCATGGGCTCCCTCCGGTCCTGCTTCCCGTTGCCCCG +
Preference number: 5 (lower is better)
Translates to: PGLWNLRLPPQELSV*VVHGLPPVLLPVAP
Trigger: CGGGGCAACGGGAAGCAGGACCGGAGGGAGCCCATGGACGACCCAGACAGACAGCTCCTGGGGCGGAAGCCGAAGGTTCCACAAGCCAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000130017.2
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS GCA 90 bp CCCAGGAGCTGTCTGTCTGGGTCGTCCATGGGCTCCCTCCGGTCCTaGTTCCCGTTGCCCCGGGCTGCCCTTCGAGTTGGAGTGTTTGGC +
Preference number: 5 (lower is better)
Translates to: PRSCLSGSSMGSLRS*FPLPRAALRVGVFG
Trigger: GCCAAACACTCCAACTCGAAGGGCAGCCCGGGGCAACGGGAAGCAGGACCGGAGGGAGCCCATGGACGACCCAGACAGACAGCTCCTGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000130017.2
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS TCA 90 bp AACTGCCGGCTCAGCTCCTCAGAGACGTCACAGAGGGCCCCAGGCTaGGCTGCTTTAGCTCGAGCCCCCTCGGTCTTCCCAGGAGCCTGG +
Preference number: 5 (lower is better)
Translates to: NCRLSSSETSQRAPG*AALARAPSVFPGAW
Trigger: CCAGGCTCCTGGGAAGACCGAGGGGGCTCGAGCTAAAGCAGCTCAGCCTGGGGCCCTCTGTGACGTCTCTGAGGAGCTGAGCCGGCAGTT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000130017.2
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS GCA 90 bp GTCTGTCTGGGTCGTCCATGGGCTCCCTCCGGTCCTGCTTCCCGTTaGCCCGGGCTGCCCTTCGAGTTGGAGTGTTTGGCAGGCCCATTC +
Preference number: 5 (lower is better)
Translates to: VCLGRPWAPSGPASR*PGLPFELECLAGPF
Trigger: GAATGGGCCTGCCAAACACTCCAACTCGAAGGGCAGCCCGGGGCAACGGGAAGCAGGACCGGAGGGAGCCCATGGACGACCCAGACAGAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000130017.2
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS GCA 90 bp CCGGCTCAGCTCCTCAGAGACGTCACAGAGGGCCCCAGGCTGAGCTaGTTTAGCTCGAGCCCCCTCGGTCTTCCCAGGAGCCTGGCTTGT +
Preference number: 5 (lower is better)
Translates to: PAQLLRDVTEGPRLS*FSSSPLGLPRSLAC
Trigger: ACAAGCCAGGCTCCTGGGAAGACCGAGGGGGCTCGAGCTAAAGCAGCTCAGCCTGGGGCCCTCTGTGACGTCTCTGAGGAGCTGAGCCGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000130017.2
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS-3UTR CAA 90 bp CCCTGGGCTGCTCCGTGTGGAAGCCTTGCATGGACGAGGCCTGACTGGGCTGCTCACAGACTCTCAAGCTaGCTTCGGGCCAGGACAGCC +
Preference number: 5 (lower is better)
Translates to: PWAAPCGSLAWTRPDWAAHRLSS*LRARTA
Trigger: GGCTGTCCTGGCCCGAAGCAAGCTTGAGAGTCTGTG...AGCAGCCCAGTCAGGCCTCGTCCATGCAAGGCTTCCACACGGAGCAGCCCAGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS CCA 90 bp TCCTGGCTGCATAGGTTCGGGACTTCTCCGTGTCTTCCGGCTCAGTaGGCTCACCCTGTGCTCCCTCCTCAGCCGGGCCTCCCTGATTGT +
Preference number: 5 (lower is better)
Translates to: SWLHRFGTSPCLPAQ*AHPVLPPQPGLPDC
Trigger: ACAATCAGGGAGGCCCGGCTGAGGAGGGAGCACAGGGTGAGCCCACTGAGCCGGAAGACACGGAGAAGTCCCGAACCTATGCAGCCAGGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS-3UTR CAA 90 bp CCCTGGGCTGCTCCGTGTGGAAGCCTTGCATGGACGAGGCCTGACTGGGCTGCTATCTCCAGCAGAGCCTaGTTGCTGCTTTCCCACCGG +
Preference number: 5 (lower is better)
Translates to: PWAAPCGSLAWTRPDWAAISSRA*LLLSHR
Trigger: CCGGTGGGAAAGCAGCAACAAGGCTCTGCTGGAGAT...AGCAGCCCAGTCAGGCCTCGTCCATGCAAGGCTTCCACACGGAGCAGCCCAGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS GCA 90 bp GGTTCGGGACTTCTCCGTGTCTTCCGGCTCAGTGGGCTCACCCTGTaGTCCCTCCTCAGCCGGGCCTCCCTGATTGTTGTCCACACAGTA +
Preference number: 5 (lower is better)
Translates to: GSGLLRVFRLSGLTL*SLLSRASLIVVHTV
Trigger: TACTGTGTGGACAACAATCAGGGAGGCCCGGCTGAGGAGGGAGCACAGGGTGAGCCCACTGAGCCGGAAGACACGGAGAAGTCCCGAACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS CCA 90 bp GGCTCCCGAGCAGCAAGGAGCGTCTGTGGCCCTTGGAGAGCTGGCTaGTTGAGCCCCAGGACTTTCAACCCCTTGTTCCTTGGAGGCAGT +
Preference number: 5 (lower is better)
Translates to: GSRAARSVCGPWRAG*LSPRTFNPLFLGGS
Trigger: ACTGCCTCCAAGGAACAAGGGGTTGAAAGTCCTGGGGCTCAACCAGCCAGCTCTCCAAGGGCCACAGACGCTCCTTGCTGCTCGGGAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp GGTGTGCAGTCACGAGAGCTTCAGCAGAGCCCCGAGACCACAGTAACACTGAGGTGGGCCTGCTGGAGCTaGGCGTCCACTAGCTGCTGC +
Preference number: 5 (lower is better)
Translates to: GVQSRELQQSPETTVTLRWACWS*ASTSCC
Trigger: GCAGCAGCTAGTGGACGCCAAGCTCCAGCAGGCCCA...CCTCAGTGTTACTGTGGTCTCGGGGCTCTGCTGAAGCTCTCGTGACTGCACACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp CGTGTGGAAGCCTTGCATGGACGAGGCCTGACTGGGCTGCTGCTCCTGTCCCAGAGGCCCTCCAGCTCTTaGTCCCGGACGGTTTTCTCT +
Preference number: 5 (lower is better)
Translates to: RVEALHGRGLTGLLLLSQRPSSS*SRTVFS
Trigger: AGAGAAAACCGTCCGGGACAAAGAGCTGGAGGGCCT...CTGGGACAGGAGCAGCAGCCCAGTCAGGCCTCGTCCATGCAAGGCTTCCACACG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS GCA 90 bp GTCGTCCATGGGCTCCCTCCGGTCCTGCTTCCCGTTGCCCCGGGCTaGCCTTCGAGTTGGAGTGTTTGGCAGGCCCATTCTTTTTGTCTT +
Preference number: 5 (lower is better)
Translates to: VVHGLPPVLLPVAPG*PSSWSVWQAHSFCL
Trigger: AAGACAAAAAGAATGGGCCTGCCAAACACTCCAACTCGAAGGGCAGCCCGGGGCAACGGGAAGCAGGACCGGAGGGAGCCCATGGACGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000130017.2
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS GCA 90 bp GCCGTTGACGACTGGAATGCCTGGTTCAGGCTCCCCATTCCTGGCTaGATAGGTTCGGGACTTCTCCGTGTCTTCCGGCTCAGTGGGCTC +
Preference number: 5 (lower is better)
Translates to: AVDDWNAWFRLPIPG*IGSGLLRVFRLSGL
Trigger: GAGCCCACTGAGCCGGAAGACACGGAGAAGTCCCGAACCTATGCAGCCAGGAATGGGGAGCCTGAACCAGGCATTCCAGTCGTCAACGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS GCA 90 bp GGTGGCCTCTGGCCTCCGCTCAGAGCCAATGTCAGTGATGCCCCCTaGAGTCAGGTCCTGTACCCTCTTGTTGAGGTCATTGCGCTCGGT +
Preference number: 5 (lower is better)
Translates to: GGLWPPLRANVSDAP*SQVLYPLVEVIALG
Trigger: ACCGAGCGCAATGACCTCAACAAGAGGGTACAGGACCTGACTGCAGGGGGCATCACTGACATTGGCTCTGAGCGGAGGCCAGAGGCCACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS CCA 90 bp CCCAGGACTTTCAACCCCTTGTTCCTTGGAGGCAGTGGTGGCCTCTaGCCTCCGCTCAGAGCCAATGTCAGTGATGCCCCCTGCAGTCAG +
Preference number: 5 (lower is better)
Translates to: PRTFNPLFLGGSGGL*PPLRANVSDAPCSQ
Trigger: CTGACTGCAGGGGGCATCACTGACATTGGCTCTGAGCGGAGGCCAGAGGCCACCACTGCCTCCAAGGAACAAGGGGTTGAAAGTCCTGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp CCCTGGGCTGCTCCGTGTGGAAGCCTTGCATGGACGAGGCCTGACTGGGCTGCTAGGACTTTCAACCCCTaGTTCCTTGGAGGCAGTGGT +
Preference number: 5 (lower is better)
Translates to: PWAAPCGSLAWTRPDWAARTFNP*FLGGSG
Trigger: ACCACTGCCTCCAAGGAACAAGGGGTTGAAAGTCCT...AGCAGCCCAGTCAGGCCTCGTCCATGCAAGGCTTCCACACGGAGCAGCCCAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp CACACCTCTGAGATGGAGGTGAGGGGCAGGAGCCAAGAAACGACCATGCGCCAAGAGCGTCTGTGGCCCTaGGAGAGCTGGCTGGTTGAG +
Preference number: 5 (lower is better)
Translates to: HTSEMEVRGRSQETTMRQERLWP*ESWLVE
Trigger: CTCAACCAGCCAGCTCTCCAAGGGCCACAGACGCTC...TTGGCGCATGGTCGTTTCTTGGCTCCTGCCCCTCACCTCCATCTCAGAGGTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS GCA 90 bp CAGGTCCTGTACCCTCTTGTTGAGGTCATTGCGCTCGGTCTGCAGTaGTCGGCACAGCTTCTCCAGCCGCTGGATTTTCACCTGCAGGCC +
Preference number: 5 (lower is better)
Translates to: QVLYPLVEVIALGLQ*SAQLLQPLDFHLQA
Trigger: GGCCTGCAGGTGAAAATCCAGCGGCTGGAGAAGCTGTGCCGAGCACTGCAGACCGAGCGCAATGACCTCAACAAGAGGGTACAGGACCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS GCA 90 bp TTCTCCGTGTACAGGGCGAGCTGCTGCTTTAGGTGGGTCTCCTGCTaGTTCATCAGCTCGCACATCCTCTGGGACTCCACCGCTTCCTTC +
Preference number: 5 (lower is better)
Translates to: FSVYRASCCFRWVSC*FISSHILWDSTASF
Trigger: GAAGGAAGCGGTGGAGTCCCAGAGGATGTGCGAGCTGATGAAGCAGCAGGAGACCCACCTAAAGCAGCAGCTCGCCCTGTACACGGAGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS GCA 90 bp AACTTCTCCGTGTACAGGGCGAGCTGCTGCTTTAGGTGGGTCTCCTaGTGCTTCATCAGCTCGCACATCCTCTGGGACTCCACCGCTTCC +
Preference number: 5 (lower is better)
Translates to: NFSVYRASCCFRWVS*CFISSHILWDSTAS
Trigger: GGAAGCGGTGGAGTCCCAGAGGATGTGCGAGCTGATGAAGCAGCAGGAGACCCACCTAAAGCAGCAGCTCGCCCTGTACACGGAGAAGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp CTGCCCCACAAAGACTCTGCCAGGGACACCATTCCCAGGTTAAGAGAAGCAATGCGGGCCAGGACAGCCTaGCTGTGTTCCCCTCGCAGA +
Preference number: 5 (lower is better)
Translates to: LPHKDSARDTIPRLREAMRARTA*LCSPRR
Trigger: TCTGCGAGGGGAACACAGCAAGGCTGTCCTGGCCCG...CATTGCTTCTCTTAACCTGGGAATGGTGTCCCTGGCAGAGTCTTTGTGGGGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS GCA 90 bp CCTCGCAGATGGTCCTTCTCCTGCACGAGCTGGCTCTGCTTCTTCTaGAGGAGCTTCATCTGCTTCTGCGAGTTCCGATGCTCTTCCAGC +
Preference number: 5 (lower is better)
Translates to: PRRWSFSCTSWLCFF*RSFICFCEFRCSSS
Trigger: GCTGGAAGAGCATCGGAACTCGCAGAAGCAGATGAAGCTCCTGCAGAAGAAGCAGAGCCAGCTCGTGCAGGAGAAGGACCATCTGCGAGG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS CCA 90 bp CTCTCCCTTAGAGGTCTCCTTCTCGCCGTTGACGACTGGAATGCCTaGTTCAGGCTCCCCATTCCTGGCTGCATAGGTTCGGGACTTCTC +
Preference number: 5 (lower is better)
Translates to: LSLRGLLLAVDDWNA*FRLPIPGCIGSGLL
Trigger: GAGAAGTCCCGAACCTATGCAGCCAGGAATGGGGAGCCTGAACCAGGCATTCCAGTCGTCAACGGCGAGAAGGAGACCTCTAAGGGAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS CCA 90 bp TGTTCCAGGCTCTCCCTTAGAGGTCTCCTTCTCGCCGTTGACGACTaGAATGCCTGGTTCAGGCTCCCCATTCCTGGCTGCATAGGTTCG +
Preference number: 5 (lower is better)
Translates to: CSRLSLRGLLLAVDD*NAWFRLPIPGCIGS
Trigger: CGAACCTATGCAGCCAGGAATGGGGAGCCTGAACCAGGCATTCCAGTCGTCAACGGCGAGAAGGAGACCTCTAAGGGAGAGCCTGGAACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS-3UTR CAA 90 bp GGTGTGCAGTCACGAGAGCTTCAGCAGAGCCCCGAGACCACAGTAACACTGAGGTCCTGTACCCTCTTGTaGAGGTCATTGCGCTCGGTC +
Preference number: 5 (lower is better)
Translates to: GVQSRELQQSPETTVTLRSCTLL*RSLRSV
Trigger: GACCGAGCGCAATGACCTCAACAAGAGGGTACAGGA...CCTCAGTGTTACTGTGGTCTCGGGGCTCTGCTGAAGCTCTCGTGACTGCACACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp TCAGTGTATGGAAGAGAAGCCTCAGCTTCCCAGACGGTCACTCCAGAAAAGCTGGGGCTGCCCTTCGAGTaGGAGTGTTTGGCAGGCCCA +
Preference number: 5 (lower is better)
Translates to: SVYGREASASQTVTPEKLGLPFE*ECLAGP
Trigger: TGGGCCTGCCAAACACTCCAACTCGAAGGGCAGCCC...CAGCTTTTCTGGAGTGACCGTCTGGGAAGCTGAGGCTTCTCTTCCATACACTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp AGGGACGGTGAAGACAACTCCTCACAGCTATTTTGGTTCCTGGGATGTCTGTTCTGGGCCTGCTGGAGCTaGGCGTCCACTAGCTGCTGC +
Preference number: 5 (lower is better)
Translates to: RDGEDNSSQLFWFLGCLFWACWS*ASTSCC
Trigger: GCAGCAGCTAGTGGACGCCAAGCTCCAGCAGGCCCA...GAACAGACATCCCAGGAACCAAAATAGCTGTGAGGAGTTGTCTTCACCGTCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp TCTGCATTGCCCTGGGTGCCTACAAGTGGATGGAGGGAAAGCCAAGGTTCTCTGTCAACCCCTTGTTCCTaGGAGGCAGTGGTGGCCTCT +
Preference number: 5 (lower is better)
Translates to: SALPWVPTSGWRESQGSLSTPCS*EAVVAS
Trigger: AGAGGCCACCACTGCCTCCAAGGAACAAGGGGTTGA...CAGAGAACCTTGGCTTTCCCTCCATCCACTTGTAGGCACCCAGGGCAATGCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp TGGGCTGACTTTGGAAAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGGGGCTGCCCTTCGAGTaGGAGTGTTTGGCAGGCCCA +
Preference number: 5 (lower is better)
Translates to: WADFGKQSSCSDCRYGQRGLPFE*ECLAGP
Trigger: TGGGCCTGCCAAACACTCCAACTCGAAGGGCAGCCC...CCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp CAGGAAGAAGTGAAATCCCAAGGACTCACTTTTTGGCCAAGAGGGTTCGAAGGACGGGCCAGGACAGCCTaGCTGTGTTCCCCTCGCAGA +
Preference number: 5 (lower is better)
Translates to: QEEVKSQGLTFWPRGFEGRARTA*LCSPRR
Trigger: TCTGCGAGGGGAACACAGCAAGGCTGTCCTGGCCCG...TCCTTCGAACCCTCTTGGCCAAAAAGTGAGTCCTTGGGATTTCACTTCTTCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp CCAAATCGCCCAAGTTCTGCTCACAAAAAGGAGGAGTCCAGGCCTGGGTGCTTTATCTCCAGCAGAGCCTaGTTGCTGCTTTCCCACCGG +
Preference number: 5 (lower is better)
Translates to: PNRPSSAHKKEESRPGCFISSRA*LLLSHR
Trigger: CCGGTGGGAAAGCAGCAACAAGGCTCTGCTGGAGAT...AAAGCACCCAGGCCTGGACTCCTCCTTTTTGTGAGCAGAACTTGGGCGATTTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp TCTGCATTGCCCTGGGTGCCTACAAGTGGATGGAGGGAAAGCCAAGGTTCTCTGAGGTCCTGTACCCTCTaGTTGAGGTCATTGCGCTCG +
Preference number: 5 (lower is better)
Translates to: SALPWVPTSGWRESQGSLRSCTL*LRSLRS
Trigger: CGAGCGCAATGACCTCAACAAGAGGGTACAGGACCT...CAGAGAACCTTGGCTTTCCCTCCATCCACTTGTAGGCACCCAGGGCAATGCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp ACAGCTATTTTGGTTCCTGGGATGTCTGTTCTTGACCTACCAGCCAGCTTAGGCGAGCGTCTGTGGCCCTaGGAGAGCTGGCTGGTTGAG +
Preference number: 5 (lower is better)
Translates to: TAILVPGMSVLDLPASLGERLWP*ESWLVE
Trigger: CTCAACCAGCCAGCTCTCCAAGGGCCACAGACGCTC...GCCTAAGCTGGCTGGTAGGTCAAGAACAGACATCCCAGGAACCAAAATAGCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS GCA 90 bp AGTGCAGCCAGCTTCTCCTCTGGGGTACTCAGCGTGTTCAGTGTCTaGATCAGCAGAGTGATCTCCTTCCCTAGACCCTTGGCTTTCTTC +
Preference number: 5 (lower is better)
Translates to: SAASFSSGVLSVFSV*ISRVISFPRPLAFF
Trigger: GAAGAAAGCCAAGGGTCTAGGGAAGGAGATCACTCTGCTGATGCAGACACTGAACACGCTGAGTACCCCAGAGGAGAAGCTGGCTGCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS GCA 90 bp GCTGAATGTCATTCAGTGTCACCTGGAAGTGTGAAGTCACTTCTTTaGGCTTCTCCTCCTCCTCACGGGCTCGCTGCACGCCTTCTTCCT +
Preference number: 5 (lower is better)
Translates to: AECHSVSPGSVKSLL*ASPPPHGLAARLLP
Trigger: AGGAAGAAGGCGTGCAGCGAGCCCGTGAGGAGGAGGAGAAGCGCAAAGAAGTGACTTCACACTTCCAGGTGACACTGAATGACATTCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000133803.8
CDS GCA 90 bp CCCGGACGGTTTTCTCTTCAGCCATCTCCAGCAGAGCCTTGTTGCTaGTTTCCCACCGGGATCGATACATGGTGGTTTCTTTCTCCAGCT +
Preference number: 5 (lower is better)
Translates to: PGRFSLQPSPAEPCC*FPTGIDTWWFLSPA
Trigger: AGCTGGAGAAAGAAACCACCATGTATCGATCCCGGTGGGAAAGCAGCAACAAGGCTCTGCTGGAGATGGCTGAAGAGAAAACCGTCCGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp GGGCTGACTTTGGAAAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGGTCCAGCAGAGCCTTGTaGCTGCTTTCCCACCGGGAT +
Preference number: 5 (lower is better)
Translates to: GLTLESRAAVVTVDMVRGSSRAL*LLSHRD
Trigger: ATCCCGGTGGGAAAGCAGCAACAAGGCTCTGCTGGA...CCCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp GGGCTGACTTTGGAAAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGGAGGCCCTCCAGCTCTTaGTCCCGGACGGTTTTCTCT +
Preference number: 5 (lower is better)
Translates to: GLTLESRAAVVTVDMVRGRPSSS*SRTVFS
Trigger: AGAGAAAACCGTCCGGGACAAAGAGCTGGAGGGCCT...CCCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp TCTGCATTGCCCTGGGTGCCTACAAGTGGATGGAGGGAAAGCCAAGGTTCTCTGAGGACTTTCAACCCCTaGTTCCTTGGAGGCAGTGGT +
Preference number: 5 (lower is better)
Translates to: SALPWVPTSGWRESQGSLRTFNP*FLGGSG
Trigger: ACCACTGCCTCCAAGGAACAAGGGGTTGAAAGTCCT...CAGAGAACCTTGGCTTTCCCTCCATCCACTTGTAGGCACCCAGGGCAATGCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS TCA 90 bp CTGTTCCATCTGCAGCTGAATGTCATTCAGTGTCACCTGGAAGTGTaGAGTCACTTCTTTGCGCTTCTCCTCCTCCTCACGGGCTCGCTG +
Preference number: 5 (lower is better)
Translates to: LFHLQLNVIQCHLEV*SHFFALLLLLTGSL
Trigger: CAGCGAGCCCGTGAGGAGGAGGAGAAGCGCAAAGAAGTGACTTCACACTTCCAGGTGACACTGAATGACATTCAGCTGCAGATGGAACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000133803.8
CDS CCA 90 bp TGCTCGATCAACTTCTTGAGCCTCTCGGCTAGCTCCATATTCTCCTaGCGCAGCTTGGAGTTTCGCTCGTTATGCTGTTCCATCTGCAGC +
Preference number: 5 (lower is better)
Translates to: CSINFLSLSASSIFS*RSLEFRSLCCSICS
Trigger: GCTGCAGATGGAACAGCATAACGAGCGAAACTCCAAGCTGCGCCAGGAGAATATGGAGCTAGCCGAGAGGCTCAAGAAGTTGATCGAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp AGGGACGAGAGCCCAAATCGCCCAAGTTCTGCTCACAAAAAGGAGGAGTCCAGGTCCTTCCCTAGACCCTaGGCTTTCTTCTTCTCCTGT +
Preference number: 5 (lower is better)
Translates to: RDESPNRPSSAHKKEESRSFPRP*AFFFSC
Trigger: ACAGGAGAAGAAGAAAGCCAAGGGTCTAGGGAAGGA...CCTGGACTCCTCCTTTTTGTGAGCAGAACTTGGGCGATTTGGGCTCTCGTCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp TCAGTGTATGGAAGAGAAGCCTCAGCTTCCCAGACGGTCACTCCAGAAAAGCTGCTCTTGTTGAGGTCATaGCGCTCGGTCTGCAGTGCT +
Preference number: 5 (lower is better)
Translates to: SVYGREASASQTVTPEKLLLLRS*RSVCSA
Trigger: AGCACTGCAGACCGAGCGCAATGACCTCAACAAGAG...CAGCTTTTCTGGAGTGACCGTCTGGGAAGCTGAGGCTTCTCTTCCATACACTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp GACCTTGGGAGAAATTCCACAGGACAACAGATTCCAGCTGGAGATGGCAAAGCCAGCTCAGCATACTTCTaGCACAGTGCAGCCAGCTTC +
Preference number: 5 (lower is better)
Translates to: DLGRNSTGQQIPAGDGKASSAYF*HSAASF
Trigger: GAAGCTGGCTGCACTGTGCAAGAAGTATGCTGAGCT...GGCTTTGCCATCTCCAGCTGGAATCTGTTGTCCTGTGGAATTTCTCCCAAGGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp CTTAGGCAGGAAGAAGTGAAATCCCAAGGACTCACTTTTTGGCCAAGAGGGTTCTCCAGCAGAGCCTTGTaGCTGCTTTCCCACCGGGAT +
Preference number: 5 (lower is better)
Translates to: LRQEEVKSQGLTFWPRGFSSRAL*LLSHRD
Trigger: ATCCCGGTGGGAAAGCAGCAACAAGGCTCTGCTGGA...GAACCCTCTTGGCCAAAAAGTGAGTCCTTGGGATTTCACTTCTTCCTGCCTAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp GTCTCCTGGGCTGACTTTGGAAAGCAGAGCAGCTGTAGTGACTGTAGATATGGTTCCTGTACCCTCTTGTaGAGGTCATTGCGCTCGGTC +
Preference number: 5 (lower is better)
Translates to: VSWADFGKQSSCSDCRYGSCTLL*RSLRSV
Trigger: GACCGAGCGCAATGACCTCAACAAGAGGGTACAGGA...ACCATATCTACAGTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCCAGGAGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp TGGGCTGACTTTGGAAAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGAGGTCCTGTACCCTCTaGTTGAGGTCATTGCGCTCG +
Preference number: 5 (lower is better)
Translates to: WADFGKQSSCSDCRYGQRRSCTL*LRSLRS
Trigger: CGAGCGCAATGACCTCAACAAGAGGGTACAGGACCT...CCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp TGTCAGCACAACTTCAAACAAGTATGGGTGGCAAAGGAAAGCAGTCATGGGGACTCAACCCCTTGTTCCTaGGAGGCAGTGGTGGCCTCT +
Preference number: 5 (lower is better)
Translates to: CQHNFKQVWVAKESSHGDSTPCS*EAVVAS
Trigger: AGAGGCCACCACTGCCTCCAAGGAACAAGGGGTTGA...GTCCCCATGACTGCTTTCCTTTGCCACCCATACTTGTTTGAAGTTGTGCTGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp CAGACGGTCACTCCAGAAAAGCTGTTGTGGAAACTGACTCAACACCTTGGCAGGTCCTTCCCTAGACCCTaGGCTTTCTTCTTCTCCTGT +
Preference number: 5 (lower is better)
Translates to: QTVTPEKLLWKLTQHLGRSFPRP*AFFFSC
Trigger: ACAGGAGAAGAAGAAAGCCAAGGGTCTAGGGAAGGA...CCTGCCAAGGTGTTGAGTCAGTTTCCACAACAGCTTTTCTGGAGTGACCGTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp CTTAGGCAGGAAGAAGTGAAATCCCAAGGACTCACTTTTTGGCCAAGAGGGTTCCTCTTGTTGAGGTCATaGCGCTCGGTCTGCAGTGCT +
Preference number: 5 (lower is better)
Translates to: LRQEEVKSQGLTFWPRGFLLLRS*RSVCSA
Trigger: AGCACTGCAGACCGAGCGCAATGACCTCAACAAGAG...GAACCCTCTTGGCCAAAAAGTGAGTCCTTGGGATTTCACTTCTTCCTGCCTAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS TCA 90 bp TGGCGCAGCTTGGAGTTTCGCTCGTTATGCTGTTCCATCTGCAGCTaGATGTCATTCAGTGTCACCTGGAAGTGTGAAGTCACTTCTTTG +
Preference number: 5 (lower is better)
Translates to: WRSLEFRSLCCSICS*MSFSVTWKCEVTSL
Trigger: CAAAGAAGTGACTTCACACTTCCAGGTGACACTGAATGACATTCAGCTGCAGATGGAACAGCATAACGAGCGAAACTCCAAGCTGCGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp CAGACGGTCACTCCAGAAAAGCTGTTGTGGAAACTGACTCAACACCTTGGCAGGAACACTTCACTGCTTTaGGAAAGTGTGTTCTGGAAC +
Preference number: 5 (lower is better)
Translates to: QTVTPEKLLWKLTQHLGRNTSLL*ESVFWN
Trigger: GTTCCAGAACACACTTTCCAAAAGCAGTGAAGTGTT...CCTGCCAAGGTGTTGAGTCAGTTTCCACAACAGCTTTTCTGGAGTGACCGTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp GGGCTGACTTTGGAAAGCAGAGCAGCTGTAGTGACTGTAGATATGGTCAGAGGGTTATGTTTGAAGACTTaGTCGATATGCTCCTCACGA +
Preference number: 5 (lower is better)
Translates to: GLTLESRAAVVTVDMVRGLCLKT*SICSSR
Trigger: TCGTGAGGAGCATATCGACAAAGTCTTCAAACATAA...CCCTCTGACCATATCTACAGTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp ACAGCTATTTTGGTTCCTGGGATGTCTGTTCTTGACCTACCAGCCAGCTTAGGCTGCAGGTCCTTATGTTaGAAGACTTTGTCGATATGC +
Preference number: 5 (lower is better)
Translates to: TAILVPGMSVLDLPASLGCRSLC*KTLSIC
Trigger: GCATATCGACAAAGTCTTCAAACATAAGGACCTGCA...GCCTAAGCTGGCTGGTAGGTCAAGAACAGACATCCCAGGAACCAAAATAGCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp ACAGCTATTTTGGTTCCTGGGATGTCTGTTCTTGACCTACCAGCCAGCTTAGGCAACACTTCACTGCTTTaGGAAAGTGTGTTCTGGAAC +
Preference number: 5 (lower is better)
Translates to: TAILVPGMSVLDLPASLGNTSLL*ESVFWN
Trigger: GTTCCAGAACACACTTTCCAAAAGCAGTGAAGTGTT...GCCTAAGCTGGCTGGTAGGTCAAGAACAGACATCCCAGGAACCAAAATAGCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp AGGGACGGTGAAGACAACTCCTCACAGCTATTTTGGTTCCTGGGATGTCTGTTCTTTTCCATCTCCTGTTaGAACGTGGTGAACACTTCA +
Preference number: 5 (lower is better)
Translates to: RDGEDNSSQLFWFLGCLFFSISC*NVVNTS
Trigger: TGAAGTGTTCACCACGTTCAAACAGGAGATGGAAAA...GAACAGACATCCCAGGAACCAAAATAGCTGTGAGGAGTTGTCTTCACCGTCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp CAGCTGTTTACTTTTTGGTTTCCTGACAAGGGGTCCTGCTTCCTAGCTCTGCTGTTATGTTTGAAGACTTaGTCGATATGCTCCTCACGA +
Preference number: 5 (lower is better)
Translates to: QLFTFWFPDKGSCFLALLLCLKT*SICSSR
Trigger: TCGTGAGGAGCATATCGACAAAGTCTTCAAACATAA...CAGCAGAGCTAGGAAGCAGGACCCCTTGTCAGGAAACCAAAAAGTAAACAGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS-3UTR CAA 90 bp GGACTATTTAATGTAAAATTCATCAATAGCAAGTCCCTGGCTGCTGCCAATTCCTTTTCCATCTCCTGTTaGAACGTGGTGAACACTTCA +
Preference number: 5 (lower is better)
Translates to: GLFNVKFINSKSLAAANSFSISC*NVVNTS
Trigger: TGAAGTGTTCACCACGTTCAAACAGGAGATGGAAAA...GGAATTGGCAGCAGCCAGGGACTTGCTATTGATGAATTTTACATTAAATAGTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS CCA 72 bp GCTTCCGCCCCAGGAGCTGTCTGTCTGGGTCGTCCATaGGCTCCCTCCGGTCCTGCTTCCCGTTGCCCCGGG +
Preference number: 6 (lower is better)
Translates to: ASAPGAVCLGRP*APSGPASRCPG
Trigger: CCCGGGGCAACGGGAAGCAGGACCGGAGGGAGCCCATGGACGACCCAGACAGACAGCTCCTGGGGCGGAAGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000130017.2
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS CAA 72 bp GGGTCGTCCATGGGCTCCCTCCGGTCCTGCTTCCCGTaGCCCCGGGCTGCCCTTCGAGTTGGAGTGTTTGGC +
Preference number: 6 (lower is better)
Translates to: GSSMGSLRSCFP*PRAALRVGVFG
Trigger: GCCAAACACTCCAACTCGAAGGGCAGCCCGGGGCAACGGGAAGCAGGACCGGAGGGAGCCCATGGACGACCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000130017.2
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS GCA 72 bp GGGCTCCCTCCGGTCCTGCTTCCCGTTGCCCCGGGCTaGCCTTCGAGTTGGAGTGTTTGGCAGGCCCATTCT +
Preference number: 6 (lower is better)
Translates to: GLPPVLLPVAPG*PSSWSVWQAHS
Trigger: AGAATGGGCCTGCCAAACACTCCAACTCGAAGGGCAGCCCGGGGCAACGGGAAGCAGGACCGGAGGGAGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000130017.2
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS GCA 72 bp GGTCGTCCATGGGCTCCCTCCGGTCCTGCTTCCCGTTaGCCCGGGCTGCCCTTCGAGTTGGAGTGTTTGGCA +
Preference number: 6 (lower is better)
Translates to: GRPWAPSGPASR*PGLPFELECLA
Trigger: TGCCAAACACTCCAACTCGAAGGGCAGCCCGGGGCAACGGGAAGCAGGACCGGAGGGAGCCCATGGACGACC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000130017.2
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS GCA 72 bp TGTCTGTCTGGGTCGTCCATGGGCTCCCTCCGGTCCTaGTTCCCGTTGCCCCGGGCTGCCCTTCGAGTTGGA +
Preference number: 6 (lower is better)
Translates to: CLSGSSMGSLRS*FPLPRAALRVG
Trigger: TCCAACTCGAAGGGCAGCCCGGGGCAACGGGAAGCAGGACCGGAGGGAGCCCATGGACGACCCAGACAGACA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000130017.2
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS CCA 72 bp TGGAACCTTCGGCTTCCGCCCCAGGAGCTGTCTGTCTaGGTCGTCCATGGGCTCCCTCCGGTCCTGCTTCCC +
Preference number: 6 (lower is better)
Translates to: WNLRLPPQELSV*VVHGLPPVLLP
Trigger: GGGAAGCAGGACCGGAGGGAGCCCATGGACGACCCAGACAGACAGCTCCTGGGGCGGAAGCCGAAGGTTCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000130017.2
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS GCA 72 bp CTCCTCAGAGACGTCACAGAGGGCCCCAGGCTGAGCTaGTTTAGCTCGAGCCCCCTCGGTCTTCCCAGGAGC +
Preference number: 6 (lower is better)
Translates to: LLRDVTEGPRLS*FSSSPLGLPRS
Trigger: GCTCCTGGGAAGACCGAGGGGGCTCGAGCTAAAGCAGCTCAGCCTGGGGCCCTCTGTGACGTCTCTGAGGAG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000130017.2
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS CAA 72 bp CGGGCTCGCTGCACGCCTTCTTCCTTCAGGGACCGGTaGTGCCGTTGCAGCTCCCGGCACAGACTCTCAAGC +
Preference number: 6 (lower is better)
Translates to: RARCTPSSFRDR*CRCSSRHRLSS
Trigger: GCTTGAGAGTCTGTGCCGGGAGCTGCAACGGCACAACCGGTCCCTGAAGGAAGAAGGCGTGCAGCGAGCCCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000133803.8
CDS CAA 90 bp TGTCTGTCTGGGTCGTCCATGGGCTCCCTCCGGTCCTGCTTCCCGTaGCCCCGGGCTGCCCTTCGAGTTGGAGTGTTTGGCAGGCCCATT +
Preference number: 6 (lower is better)
Translates to: CLSGSSMGSLRSCFP*PRAALRVGVFGRPI
Trigger: AATGGGCCTGCCAAACACTCCAACTCGAAGGGCAGCCCGGGGCAACGGGAAGCAGGACCGGAGGGAGCCCATGGACGACCCAGACAGACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000130017.2
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS GCA 72 bp CTTCTCCGTGTCTTCCGGCTCAGTGGGCTCACCCTGTaGTCCCTCCTCAGCCGGGCCTCCCTGATTGTTGTC +
Preference number: 6 (lower is better)
Translates to: LLRVFRLSGLTL*SLLSRASLIVV
Trigger: GACAACAATCAGGGAGGCCCGGCTGAGGAGGGAGCACAGGGTGAGCCCACTGAGCCGGAAGACACGGAGAAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS CAA 72 bp AGAGCTGGCTGGTTGAGCCCCAGGACTTTCAACCCCTaGTTCCTTGGAGGCAGTGGTGGCCTCTGGCCTCCG +
Preference number: 6 (lower is better)
Translates to: RAGWLSPRTFNP*FLGGSGGLWPP
Trigger: CGGAGGCCAGAGGCCACCACTGCCTCCAAGGAACAAGGGGTTGAAAGTCCTGGGGCTCAACCAGCCAGCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS CAA 90 bp TCCCGAGCAGCAAGGAGCGTCTGTGGCCCTTGGAGAGCTGGCTGGTaGAGCCCCAGGACTTTCAACCCCTTGTTCCTTGGAGGCAGTGGT +
Preference number: 6 (lower is better)
Translates to: SRAARSVCGPWRAGW*SPRTFNPLFLGGSG
Trigger: ACCACTGCCTCCAAGGAACAAGGGGTTGAAAGTCCTGGGGCTCAACCAGCCAGCTCTCCAAGGGCCACAGACGCTCCTTGCTGCTCGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS TCA 72 bp TGGTGGCCTCTGGCCTCCGCTCAGAGCCAATGTCAGTaGTGCCCCCTGCAGTCAGGTCCTGTACCCTCTTGT +
Preference number: 6 (lower is better)
Translates to: WWPLASAQSQCQ*CPLQSGPVPSC
Trigger: ACAAGAGGGTACAGGACCTGACTGCAGGGGGCATCACTGACATTGGCTCTGAGCGGAGGCCAGAGGCCACCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS CCA 72 bp TCGGTCTGCAGTGCTCGGCACAGCTTCTCCAGCCGCTaGATTTTCACCTGCAGGCCCTCCAGCTCTTTGTCC +
Preference number: 6 (lower is better)
Translates to: SVCSARHSFSSR*IFTCRPSSSLS
Trigger: GGACAAAGAGCTGGAGGGCCTGCAGGTGAAAATCCAGCGGCTGGAGAAGCTGTGCCGAGCACTGCAGACCGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS CCA 72 bp TTCAACCCCTTGTTCCTTGGAGGCAGTGGTGGCCTCTaGCCTCCGCTCAGAGCCAATGTCAGTGATGCCCCC +
Preference number: 6 (lower is better)
Translates to: FNPLFLGGSGGL*PPLRANVSDAP
Trigger: GGGGGCATCACTGACATTGGCTCTGAGCGGAGGCCAGAGGCCACCACTGCCTCCAAGGAACAAGGGGTTGAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS CCA 72 bp CCCCAGGACTTTCAACCCCTTGTTCCTTGGAGGCAGTaGTGGCCTCTGGCCTCCGCTCAGAGCCAATGTCAG +
Preference number: 6 (lower is better)
Translates to: PQDFQPLVPWRQ*WPLASAQSQCQ
Trigger: CTGACATTGGCTCTGAGCGGAGGCCAGAGGCCACCACTGCCTCCAAGGAACAAGGGGTTGAAAGTCCTGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS CCA 72 bp CCGAGCAGCAAGGAGCGTCTGTGGCCCTTGGAGAGCTaGCTGGTTGAGCCCCAGGACTTTCAACCCCTTGTT +
Preference number: 6 (lower is better)
Translates to: PSSKERLWPLES*LVEPQDFQPLV
Trigger: AACAAGGGGTTGAAAGTCCTGGGGCTCAACCAGCCAGCTCTCCAAGGGCCACAGACGCTCCTTGCTGCTCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS CAA 72 bp GTGATGCCCCCTGCAGTCAGGTCCTGTACCCTCTTGTaGAGGTCATTGCGCTCGGTCTGCAGTGCTCGGCAC +
Preference number: 6 (lower is better)
Translates to: VMPPAVRSCTLL*RSLRSVCSARH
Trigger: GTGCCGAGCACTGCAGACCGAGCGCAATGACCTCAACAAGAGGGTACAGGACCTGACTGCAGGGGGCATCAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS TCA 72 bp CAAGGAGCGTCTGTGGCCCTTGGAGAGCTGGCTGGTTaGGCCCCAGGACTTTCAACCCCTTGTTCCTTGGAG +
Preference number: 6 (lower is better)
Translates to: QGASVALGELAG*APGLSTPCSLE
Trigger: CTCCAAGGAACAAGGGGTTGAAAGTCCTGGGGCTCAACCAGCCAGCTCTCCAAGGGCCACAGACGCTCCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS GCA 72 bp TACAGGGCGAGCTGCTGCTTTAGGTGGGTCTCCTGCTaGTTCATCAGCTCGCACATCCTCTGGGACTCCACC +
Preference number: 6 (lower is better)
Translates to: YRASCCFRWVSC*FISSHILWDST
Trigger: GGTGGAGTCCCAGAGGATGTGCGAGCTGATGAAGCAGCAGGAGACCCACCTAAAGCAGCAGCTCGCCCTGTA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS GCA 72 bp GTGTACAGGGCGAGCTGCTGCTTTAGGTGGGTCTCCTaGTGCTTCATCAGCTCGCACATCCTCTGGGACTCC +
Preference number: 6 (lower is better)
Translates to: VYRASCCFRWVS*CFISSHILWDS
Trigger: GGAGTCCCAGAGGATGTGCGAGCTGATGAAGCAGCAGGAGACCCACCTAAAGCAGCAGCTCGCCCTGTACAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS CCA 72 bp CTCTCCCTTAGAGGTCTCCTTCTCGCCGTTGACGACTaGAATGCCTGGTTCAGGCTCCCCATTCCTGGCTGC +
Preference number: 6 (lower is better)
Translates to: LSLRGLLLAVDD*NAWFRLPIPGC
Trigger: GCAGCCAGGAATGGGGAGCCTGAACCAGGCATTCCAGTCGTCAACGGCGAGAAGGAGACCTCTAAGGGAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS CAA 72 bp GGTCCTGCTTCCCGTTGCCCCGGGCTGCCCTTCGAGTaGGAGTGTTTGGCAGGCCCATTCTTTTTGTCTTGG +
Preference number: 6 (lower is better)
Translates to: GPASRCPGLPFE*ECLAGPFFLSW
Trigger: CCAAGACAAAAAGAATGGGCCTGCCAAACACTCCAACTCGAAGGGCAGCCCGGGGCAACGGGAAGCAGGACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000130017.2
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS CAA 72 bp TCAGTGATGCCCCCTGCAGTCAGGTCCTGTACCCTCTaGTTGAGGTCATTGCGCTCGGTCTGCAGTGCTCGG +
Preference number: 6 (lower is better)
Translates to: SVMPPAVRSCTL*LRSLRSVCSAR
Trigger: CCGAGCACTGCAGACCGAGCGCAATGACCTCAACAAGAGGGTACAGGACCTGACTGCAGGGGGCATCACTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS CAA 90 bp GAGCCAATGTCAGTGATGCCCCCTGCAGTCAGGTCCTGTACCCTCTaGTTGAGGTCATTGCGCTCGGTCTGCAGTGCTCGGCACAGCTTC +
Preference number: 6 (lower is better)
Translates to: EPMSVMPPAVRSCTL*LRSLRSVCSARHSF
Trigger: GAAGCTGTGCCGAGCACTGCAGACCGAGCGCAATGACCTCAACAAGAGGGTACAGGACCTGACTGCAGGGGGCATCACTGACATTGGCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS CAA 90 bp ATCTCCTCTGTTCCAGGCTCTCCCTTAGAGGTCTCCTTCTCGCCGTaGACGACTGGAATGCCTGGTTCAGGCTCCCCATTCCTGGCTGCA +
Preference number: 6 (lower is better)
Translates to: ISSVPGSPLEVSFSP*TTGMPGSGSPFLAA
Trigger: TGCAGCCAGGAATGGGGAGCCTGAACCAGGCATTCCAGTCGTCAACGGCGAGAAGGAGACCTCTAAGGGAGAGCCTGGAACAGAGGAGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS CAA 72 bp GTTCCAGGCTCTCCCTTAGAGGTCTCCTTCTCGCCGTaGACGACTGGAATGCCTGGTTCAGGCTCCCCATTC +
Preference number: 6 (lower is better)
Translates to: VPGSPLEVSFSP*TTGMPGSGSPF
Trigger: GAATGGGGAGCCTGAACCAGGCATTCCAGTCGTCAACGGCGAGAAGGAGACCTCTAAGGGAGAGCCTGGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS GCA 72 bp CATTCAGTGTCACCTGGAAGTGTGAAGTCACTTCTTTaGGCTTCTCCTCCTCCTCACGGGCTCGCTGCACGC +
Preference number: 6 (lower is better)
Translates to: HSVSPGSVKSLL*ASPPPHGLAAR
Trigger: GCGTGCAGCGAGCCCGTGAGGAGGAGGAGAAGCGCAAAGAAGTGACTTCACACTTCCAGGTGACACTGAATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000133803.8
CDS GCA 72 bp TACCCTCTTGTTGAGGTCATTGCGCTCGGTCTGCAGTaGTCGGCACAGCTTCTCCAGCCGCTGGATTTTCAC +
Preference number: 6 (lower is better)
Translates to: YPLVEVIALGLQ*SAQLLQPLDFH
Trigger: GTGAAAATCCAGCGGCTGGAGAAGCTGTGCCGAGCACTGCAGACCGAGCGCAATGACCTCAACAAGAGGGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS GCA 72 bp TGGCCTCCGCTCAGAGCCAATGTCAGTGATGCCCCCTaGAGTCAGGTCCTGTACCCTCTTGTTGAGGTCATT +
Preference number: 6 (lower is better)
Translates to: WPPLRANVSDAP*SQVLYPLVEVI
Trigger: AATGACCTCAACAAGAGGGTACAGGACCTGACTGCAGGGGGCATCACTGACATTGGCTCTGAGCGGAGGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS CCA 72 bp AACTTCTCCGTGTACAGGGCGAGCTGCTGCTTTAGGTaGGTCTCCTGCTGCTTCATCAGCTCGCACATCCTC +
Preference number: 6 (lower is better)
Translates to: NFSVYRASCCFR*VSCCFISSHIL
Trigger: GAGGATGTGCGAGCTGATGAAGCAGCAGGAGACCCACCTAAAGCAGCAGCTCGCCCTGTACACGGAGAAGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS TCA 72 bp GCTCCTCACGAAGCTCGTATTGCTCGATCAACTTCTTaGGCCTCTCGGCTAGCTCCATATTCTCCTGGCGCA +
Preference number: 6 (lower is better)
Translates to: APHEARIARSTS*ASRLAPYSPGA
Trigger: TGCGCCAGGAGAATATGGAGCTAGCCGAGAGGCTCAAGAAGTTGATCGAGCAATACGAGCTTCGTGAGGAGC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS GCA 72 bp AGCTTCTCCTCTGGGGTACTCAGCGTGTTCAGTGTCTaGATCAGCAGAGTGATCTCCTTCCCTAGACCCTTG +
Preference number: 6 (lower is better)
Translates to: SFSSGVLSVFSV*ISRVISFPRPL
Trigger: CAAGGGTCTAGGGAAGGAGATCACTCTGCTGATGCAGACACTGAACACGCTGAGTACCCCAGAGGAGAAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS CAA 72 bp TGCTCCTCACGAAGCTCGTATTGCTCGATCAACTTCTaGAGCCTCTCGGCTAGCTCCATATTCTCCTGGCGC +
Preference number: 6 (lower is better)
Translates to: CSSRSSYCSINF*SLSASSIFSWR
Trigger: GCGCCAGGAGAATATGGAGCTAGCCGAGAGGCTCAAGAAGTTGATCGAGCAATACGAGCTTCGTGAGGAGCA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS CAA 90 bp TTGTCCCGGACGGTTTTCTCTTCAGCCATCTCCAGCAGAGCCTTGTaGCTGCTTTCCCACCGGGATCGATACATGGTGGTTTCTTTCTCC +
Preference number: 6 (lower is better)
Translates to: LSRTVFSSAISSRAL*LLSHRDRYMVVSFS
Trigger: GGAGAAAGAAACCACCATGTATCGATCCCGGTGGGAAAGCAGCAACAAGGCTCTGCTGGAGATGGCTGAAGAGAAAACCGTCCGGGACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS CCA 72 bp AACTTCTTGAGCCTCTCGGCTAGCTCCATATTCTCCTaGCGCAGCTTGGAGTTTCGCTCGTTATGCTGTTCC +
Preference number: 6 (lower is better)
Translates to: NFLSLSASSIFS*RSLEFRSLCCS
Trigger: GGAACAGCATAACGAGCGAAACTCCAAGCTGCGCCAGGAGAATATGGAGCTAGCCGAGAGGCTCAAGAAGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS CAA 90 bp TCTTTGTCCCGGACGGTTTTCTCTTCAGCCATCTCCAGCAGAGCCTaGTTGCTGCTTTCCCACCGGGATCGATACATGGTGGTTTCTTTC +
Preference number: 6 (lower is better)
Translates to: SLSRTVFSSAISSRA*LLLSHRDRYMVVSF
Trigger: GAAAGAAACCACCATGTATCGATCCCGGTGGGAAAGCAGCAACAAGGCTCTGCTGGAGATGGCTGAAGAGAAAACCGTCCGGGACAAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS TCA 72 bp GGGTACTCAGCGTGTTCAGTGTCTGCATCAGCAGAGTaGTCTCCTTCCCTAGACCCTTGGCTTTCTTCTTCT +
Preference number: 6 (lower is better)
Translates to: GYSACSVSASAE*SPSLDPWLSSS
Trigger: AGAAGAAGAAAGCCAAGGGTCTAGGGAAGGAGATCACTCTGCTGATGCAGACACTGAACACGCTGAGTACCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS GCA 72 bp TTCTGCAGGAGCTTCATCTGCTTCTGCGAGTTCCGATaGTCTTCCAGCAGCTCAGCATACTTCTTGCACAGT +
Preference number: 6 (lower is better)
Translates to: FCRSFICFCEFR*SSSSSAYFLHS
Trigger: ACTGTGCAAGAAGTATGCTGAGCTGCTGGAAGAGCATCGGAACTCGCAGAAGCAGATGAAGCTCCTGCAGAA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
ENSMUST00000132217.8
ENSMUST00000133803.8
ENSMUST00000154105.8
CDS GCA 72 bp AAGACTTTGTCGATATGCTCCTCACGAAGCTCGTATTaGTCGATCAACTTCTTGAGCCTCTCGGCTAGCTCC +
Preference number: 6 (lower is better)
Translates to: KTLSICSSRSSY*SINFLSLSASS
Trigger: GGAGCTAGCCGAGAGGCTCAAGAAGTTGATCGAGCAATACGAGCTTCGTGAGGAGCATATCGACAAAGTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS GCA 72 bp TTTTCTCTTCAGCCATCTCCAGCAGAGCCTTGTTGCTaGTTTCCCACCGGGATCGATACATGGTGGTTTCTT +
Preference number: 6 (lower is better)
Translates to: FSLQPSPAEPCC*FPTGIDTWWFL
Trigger: AAGAAACCACCATGTATCGATCCCGGTGGGAAAGCAGCAACAAGGCTCTGCTGGAGATGGCTGAAGAGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12
CDS TCA 72 bp TTGGAGTTTCGCTCGTTATGCTGTTCCATCTGCAGCTaGATGTCATTCAGTGTCACCTGGAAGTGTGAAGTC +
Preference number: 6 (lower is better)
Translates to: LEFRSLCCSICS*MSFSVTWKCEV
Trigger: GACTTCACACTTCCAGGTGACACTGAATGACATTCAGCTGCAGATGGAACAGCATAACGAGCGAAACTCCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046425.16
ENSMUST00000084264.12