Pregenerated sensors for TXK (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054892Ensembl transcript IDs: ENSMUST00000113604.10, ENSMUST00000169534.6, ENSMUST00000197313.5, ENSMUST00000198464.3
Found 101 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTTGCAAGATGACCCTGTaGGCTGGAGTTCCACTTAAG | + |
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Preference number: 2 (lower is better) Translates to: VSVHLRDLGVISHLEGWCCKMTL*AGVPLK Trigger: CTTAAGTGGAACTCCAGCCCACAGGGTCATCTTGCA...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| 3UTR-3UTR TCA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTGCATTGAAATCAGTGTaGCAAGCCTGTGACCTTTGC | + |
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Preference number: 2 (lower is better) Translates to: VSVHLRDLGVISHLEGWCALKSV*QACDLC Trigger: GCAAAGGTCACAGGCTTGTCACACTGATTTCAATGC...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| 3UTR-3UTR TCA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTCAGACTATTTTGCATTaGAATCAGTGTGACAAGCCT | + |
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Preference number: 2 (lower is better) Translates to: VSVHLRDLGVISHLEGWCQTILH*NQCDKP Trigger: AGGCTTGTCACACTGATTTCAATGCAAAATAGTCTG...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| 3UTR-3UTR CCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGTGCAAGATGACCCTGTaGGCTGGAGTTCCACTTAAG | + |
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Preference number: 2 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKCKMTL*AGVPLK Trigger: CTTAAGTGGAACTCCAGCCCACAGGGTCATCTTGCA...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| 3UTR-3UTR TCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGGCATTGAAATCAGTGTaGCAAGCCTGTGACCTTTGC | + |
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Preference number: 2 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKALKSV*QACDLC Trigger: GCAAAGGTCACAGGCTTGTCACACTGATTTCAATGC...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| 3UTR-3UTR TCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGCAGACTATTTTGCATTaGAATCAGTGTGACAAGCCT | + |
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Preference number: 2 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKQTILH*NQCDKP Trigger: AGGCTTGTCACACTGATTTCAATGCAAAATAGTCTG...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| 3UTR CAA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTaGTACAAGACTACGATCAGACTATTTTGCATTGAAATCAGTGTG | + |
|
Preference number: 2 (lower is better) Translates to: QDVEGAQKCSSEVSH*YKTTIRLFCIEISV Trigger: CACACTGATTTCAATGCAAAATAGTCTGATCGTAGTCTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| 3UTR CCA 72 bp | GGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTaGAGCATACTCTTTTCACATACAGGATGTGGAAGG | + |
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Preference number: 3 (lower is better) Translates to: GPGGHQPLGRLV*SILFSHTGCGR Trigger: CCTTCCACATCCTGTATGTGAAAAGAGTATGCTCCACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| 3UTR TCA 72 bp | TGGACCACTCGAAAGAGAAATGTCAGCGCTCAAGAATaGTGTTGCCTCAGCCTTATGAAGAATAAGGGGTCT | + |
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Preference number: 3 (lower is better) Translates to: WTTRKRNVSAQE*CCLSLMKNKGS Trigger: AGACCCCTTATTCTTCATAAGGCTGAGGCAACATCATTCTTGAGCGCTGACATTTCTCTTTCGAGTGGTCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| 3UTR TCA 72 bp | AGACTACGATCAGACTATTTTGCATTGAAATCAGTGTaGCAAGCCTGTGACCTTTGCTTCGTCGCCAAGAGT | + |
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Preference number: 3 (lower is better) Translates to: RLRSDYFALKSV*QACDLCFVAKS Trigger: ACTCTTGGCGACGAAGCAAAGGTCACAGGCTTGTCACACTGATTTCAATGCAAAATAGTCTGATCGTAGTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR TCA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTAAGAGCAGCGCCTTCTaGAGCTGGCCTTTCCTCTCC | + |
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Preference number: 4 (lower is better) Translates to: VSVHLRDLGVISHLEGWCKSSAF*SWPFLS Trigger: GGAGAGGAAAGGCCAGCTTCAGAAGGCGCTGCTCTT...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR CCA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTTCCCGAAGCGGTCTCTaGCCTTCCACCAGTGAGGAT | + |
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Preference number: 4 (lower is better) Translates to: VSVHLRDLGVISHLEGWCSRSGL*PSTSED Trigger: ATCCTCACTGGTGGAAGGCCAGAGACCGCTTCGGGA...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000198464.3 |
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| CDS-3UTR TCA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTCTGGCCTTCCACCAGTaGGGATCACACCTCTCCAAT | + |
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Preference number: 4 (lower is better) Translates to: VSVHLRDLGVISHLEGWCLAFHQ*GSHLSN Trigger: ATTGGAGAGGTGTGATCCTCACTGGTGGAAGGCCAG...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR TCA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTCTACGCAGGCAGAACTaGCCAAACAGTTCCTGGCAG | + |
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Preference number: 4 (lower is better) Translates to: VSVHLRDLGVISHLEGWCLRRQN*PNSSWQ Trigger: CTGCCAGGAACTGTTTGGTCAGTTCTGCCTGCGTAG...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR TCA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTCGCCATGCCGAAGTCTaGGATCTTTACTACGCAGGC | + |
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Preference number: 4 (lower is better) Translates to: VSVHLRDLGVISHLEGWCRHAEV*DLYYAG Trigger: GCCTGCGTAGTAAAGATCTCAGACTTCGGCATGGCG...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR GCA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTCTCCGCTCTCTTCAGTaGCAAATTACCAGGCTCCCG | + |
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Preference number: 4 (lower is better) Translates to: VSVHLRDLGVISHLEGWCLRSLQ*QITRLP Trigger: CGGGAGCCTGGTAATTTGGCACTGAAGAGAGCGGAG...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR GCA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTTGGCTGGTAAACAGCTaGCCAGGAGCCCAATGGGAT | + |
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Preference number: 4 (lower is better) Translates to: VSVHLRDLGVISHLEGWCWLVNS*PGAQWD Trigger: ATCCCATTGGGCTCCTGGGCAGCTGTTTACCAGCCA...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR CCA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTATCCGAAGCGGTCTCTaGCCTTCCACCAGTGAGGAT | + |
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Preference number: 4 (lower is better) Translates to: VSVHLRDLGVISHLEGWCIRSGL*PSTSED Trigger: ATCCTCACTGGTGGAAGGCCAGAGACCGCTTCGGAT...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000197313.5 |
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| CDS-3UTR TCA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTGCTGCATTGTACTGGTaGTACTGGATCAACTCGGGG | + |
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Preference number: 4 (lower is better) Translates to: VSVHLRDLGVISHLEGWCAALYW*YWINSG Trigger: CCCCGAGTTGATCCAGTATCACCAGTACAATGCAGC...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR CCA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTGCACCCCGCCTCTGTTaGATTGAGTTTTGCCCATCA | + |
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Preference number: 4 (lower is better) Translates to: VSVHLRDLGVISHLEGWCAPRLC*IEFCPS Trigger: TGATGGGCAAAACTCAATCCAACAGAGGCGGGGTGC...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 |
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| CDS-3UTR CCA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTCTCTGTATATGGTCATaGGGGCCAGGTGAGGACGAT | + |
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Preference number: 4 (lower is better) Translates to: VSVHLRDLGVISHLEGWCLCIWS*GPGEDD Trigger: ATCGTCCTCACCTGGCCCCCATGACCATATACAGAG...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR TCA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTCTGCTCAGGCTTATCTaGGTTCTCACCTGTCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: VSVHLRDLGVISHLEGWCLLRLI*VLTCLF Trigger: GAAGAGACAGGTGAGAACTCAGATAAGCCTGAGCAG...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 |
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| CDS-3UTR TCA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTCCGCCTCTGTTGGATTaGGTTTTGCCCATCAGTTTG | + |
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Preference number: 4 (lower is better) Translates to: VSVHLRDLGVISHLEGWCPPLLD*VLPISL Trigger: CAAACTGATGGGCAAAACTCAATCCAACAGAGGCGG...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 |
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| CDS-3UTR TCA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTTACAGCCGGAAACCTTaGGAAATGGCTTCCACCACT | + |
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Preference number: 4 (lower is better) Translates to: VSVHLRDLGVISHLEGWCYSRKP*EMASTT Trigger: AGTGGTGGAAGCCATTTCTCAAGGTTTCCGGCTGTA...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR TCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGGTCATGGGGGCCAGGTaGGGACGATACAGCCGGAAA | + |
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Preference number: 4 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKVMGAR*GRYSRK Trigger: TTTCCGGCTGTATCGTCCTCACCTGGCCCCCATGAC...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR TCA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTATCTCCGTGAGAACCTaGAGCAGCTCAGCAAATGTC | + |
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Preference number: 4 (lower is better) Translates to: VSVHLRDLGVISHLEGWCISVRT*SSSANV Trigger: GACATTTGCTGAGCTGCTTCAGGTTCTCACGGAGAT...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR TCA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTCACTTCCGATCTCCTTaGCAAAAGCCAACTCTGATG | + |
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Preference number: 4 (lower is better) Translates to: VSVHLRDLGVISHLEGWCHFRSP*QKPTLM Trigger: CATCAGAGTTGGCTTTTGTCAAGGAGATCGGAAGTG...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR TCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGAAGAGCAGCGCCTTCTaGAGCTGGCCTTTCCTCTCC | + |
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Preference number: 4 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKKSSAF*SWPFLS Trigger: GGAGAGGAAAGGCCAGCTTCAGAAGGCGCTGCTCTT...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR CCA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTCCTTCACATATGTCTTaGCACATGCTCAAGAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: VSVHLRDLGVISHLEGWCPSHMS*HMLKSS Trigger: GCTGCTCTTGAGCATGTGCCAAGACATATGTGAAGG...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR TCA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTCTGGGAATGTTTTTCTaGGAGTTCTTCCTCTCTGCT | + |
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Preference number: 4 (lower is better) Translates to: VSVHLRDLGVISHLEGWCLGMFF*EFFLSA Trigger: AGCAGAGAGGAAGAACTCTCAGAAAAACATTCCCAG...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 |
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| CDS-3UTR TCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGGCGAACCACGGCCTCTaGCGCTGGGAATGTTTTTCT | + |
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Preference number: 4 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKANHGL*RWECFS Trigger: AGAAAAACATTCCCAGCGTCAGAGGCCGTGGTTCGC...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 |
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| CDS-3UTR TCA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTAGTCATAAAGAGCCTTaGCCTGGATTCTCTCATCTG | + |
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Preference number: 4 (lower is better) Translates to: VSVHLRDLGVISHLEGWCSHKEP*PGFSHL Trigger: CAGATGAGAGAATCCAGGTCAAGGCTCTTTATGACT...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR TCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGCTGGCCTTCCACCAGTaGGGATCACACCTCTCCAAT | + |
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Preference number: 4 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKLAFHQ*GSHLSN Trigger: ATTGGAGAGGTGTGATCCTCACTGGTGGAAGGCCAG...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR TCA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTGACAAAAGCCAACTCTaGTGGATCTATCTCCCACTT | + |
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Preference number: 4 (lower is better) Translates to: VSVHLRDLGVISHLEGWCDKSQL*WIYLPL Trigger: AAGTGGGAGATAGATCCATCAGAGTTGGCTTTTGTC...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR TCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGCTACGCAGGCAGAACTaGCCAAACAGTTCCTGGCAG | + |
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Preference number: 4 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKLRRQN*PNSSWQ Trigger: CTGCCAGGAACTGTTTGGTCAGTTCTGCCTGCGTAG...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR TCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGCGCCATGCCGAAGTCTaGGATCTTTACTACGCAGGC | + |
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Preference number: 4 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKRHAEV*DLYYAG Trigger: GCCTGCGTAGTAAAGATCTCAGACTTCGGCATGGCG...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR GCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGCTCCGCTCTCTTCAGTaGCAAATTACCAGGCTCCCG | + |
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Preference number: 4 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKLRSLQ*QITRLP Trigger: CGGGAGCCTGGTAATTTGGCACTGAAGAGAGCGGAG...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR GCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGTGGCTGGTAAACAGCTaGCCAGGAGCCCAATGGGAT | + |
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Preference number: 4 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKWLVNS*PGAQWD Trigger: ATCCCATTGGGCTCCTGGGCAGCTGTTTACCAGCCA...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR TCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGGCTGCATTGTACTGGTaGTACTGGATCAACTCGGGG | + |
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Preference number: 4 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKAALYW*YWINSG Trigger: CCCCGAGTTGATCCAGTATCACCAGTACAATGCAGC...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR CCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGGCACCCCGCCTCTGTTaGATTGAGTTTTGCCCATCA | + |
|
Preference number: 4 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKAPRLC*IEFCPS Trigger: TGATGGGCAAAACTCAATCCAACAGAGGCGGGGTGC...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 |
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| CDS-3UTR CCA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTGGAAACCTTGAGAAATaGCTTCCACCACTTGCAAAT | + |
|
Preference number: 4 (lower is better) Translates to: VSVHLRDLGVISHLEGWCGNLEK*LPPLAN Trigger: ATTTGCAAGTGGTGGAAGCCATTTCTCAAGGTTTCC...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR CCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGCTCTGTATATGGTCATaGGGGCCAGGTGAGGACGAT | + |
|
Preference number: 4 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKLCIWS*GPGEDD Trigger: ATCGTCCTCACCTGGCCCCCATGACCATATACAGAG...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR TCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGCTGCTCAGGCTTATCTaGGTTCTCACCTGTCTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKLLRLI*VLTCLF Trigger: GAAGAGACAGGTGAGAACTCAGATAAGCCTGAGCAG...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 |
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| CDS-3UTR TCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGCCGCCTCTGTTGGATTaGGTTTTGCCCATCAGTTTG | + |
|
Preference number: 4 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKPPLLD*VLPISL Trigger: CAAACTGATGGGCAAAACTCAATCCAACAGAGGCGG...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 |
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| CDS-3UTR TCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGTACAGCCGGAAACCTTaGGAAATGGCTTCCACCACT | + |
|
Preference number: 4 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKYSRKP*EMASTT Trigger: AGTGGTGGAAGCCATTTCTCAAGGTTTCCGGCTGTA...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR TCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGATCTCCGTGAGAACCTaGAGCAGCTCAGCAAATGTC | + |
|
Preference number: 4 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKISVRT*SSSANV Trigger: GACATTTGCTGAGCTGCTTCAGGTTCTCACGGAGAT...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR GCA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTATTGAAGACTGTGTATaGCTTCGAGCTCTTGTAAAC | + |
|
Preference number: 4 (lower is better) Translates to: VSVHLRDLGVISHLEGWCIEDCV*LRALVN Trigger: GTTTACAAGAGCTCGAAGGCATACACAGTCTTCAAT...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR TCA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTCTGATAATGTTTTATTaGAGACTGTGTATGCCTTCG | + |
|
Preference number: 4 (lower is better) Translates to: VSVHLRDLGVISHLEGWCLIMFY*RLCMPS Trigger: CGAAGGCATACACAGTCTTCAATAAAACATTATCAG...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR TCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGCACTTCCGATCTCCTTaGCAAAAGCCAACTCTGATG | + |
|
Preference number: 4 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKHFRSP*QKPTLM Trigger: CATCAGAGTTGGCTTTTGTCAAGGAGATCGGAAGTG...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR TCA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTTGCTACTGTATTTGTTaGAATGAAAGACTTCAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: VSVHLRDLGVISHLEGWCCYCIC*NERLQV Trigger: CACCTGAAGTCTTTCATTTCAACAAATACAGTAGCA...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR GCA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTTTTCTGTCACATAGTTaGTTGGGATTAAGCCTTCAT | + |
|
Preference number: 4 (lower is better) Translates to: VSVHLRDLGVISHLEGWCFLSHS*LGLSLH Trigger: ATGAAGGCTTAATCCCAAGCAACTATGTGACAGAAA...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000198464.3 |
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| CDS-3UTR CCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGCCTTCACATATGTCTTaGCACATGCTCAAGAGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKPSHMS*HMLKSS Trigger: GCTGCTCTTGAGCATGTGCCAAGACATATGTGAAGG...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR TCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGCTGGGAATGTTTTTCTaGGAGTTCTTCCTCTCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKLGMFF*EFFLSA Trigger: AGCAGAGAGGAAGAACTCTCAGAAAAACATTCCCAG...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 |
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| CDS-3UTR TCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGAGTCATAAAGAGCCTTaGCCTGGATTCTCTCATCTG | + |
|
Preference number: 4 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKSHKEP*PGFSHL Trigger: CAGATGAGAGAATCCAGGTCAAGGCTCTTTATGACT...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR TCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGGACAAAAGCCAACTCTaGTGGATCTATCTCCCACTT | + |
|
Preference number: 4 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKDKSQL*WIYLPL Trigger: AAGTGGGAGATAGATCCATCAGAGTTGGCTTTTGTC...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR GCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGAGAGTTCTTCCTCTCTaGTCAGGCTTATCTGAGTTC | + |
|
Preference number: 4 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKRVLPL*SGLSEF Trigger: GAACTCAGATAAGCCTGAGCAGAGAGGAAGAACTCT...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 |
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| CDS-3UTR GCA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTATGGCTTCCACCACTTaGAAATTTGACTTATTTTCA | + |
|
Preference number: 4 (lower is better) Translates to: VSVHLRDLGVISHLEGWCMASTT*KFDLFS Trigger: TGAAAATAAGTCAAATTTGCAAGTGGTGGAAGCCAT...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR CCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGCAGCAGAGAACAGACTaGAAGGAGCTATCTGAAAAG | + |
|
Preference number: 4 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKQQRTD*KELSEK Trigger: CTTTTCAGATAGCTCCTTCCAGTCTGTTCTCTGCTG...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169534.6 |
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| CDS-3UTR CCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGGGAAACCTTGAGAAATaGCTTCCACCACTTGCAAAT | + |
|
Preference number: 4 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKGNLEK*LPPLAN Trigger: ATTTGCAAGTGGTGGAAGCCATTTCTCAAGGTTTCC...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR GCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGATTGAAGACTGTGTATaGCTTCGAGCTCTTGTAAAC | + |
|
Preference number: 4 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKIEDCV*LRALVN Trigger: GTTTACAAGAGCTCGAAGGCATACACAGTCTTCAAT...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR TCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGCTGATAATGTTTTATTaGAGACTGTGTATGCCTTCG | + |
|
Preference number: 4 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKLIMFY*RLCMPS Trigger: CGAAGGCATACACAGTCTTCAATAAAACATTATCAG...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR TCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGTGCTACTGTATTTGTTaGAATGAAAGACTTCAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKCYCIC*NERLQV Trigger: CACCTGAAGTCTTTCATTTCAACAAATACAGTAGCA...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR GCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGTTTCTGTCACATAGTTaGTTGGGATTAAGCCTTCAT | + |
|
Preference number: 4 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKFLSHS*LGLSLH Trigger: ATGAAGGCTTAATCCCAAGCAACTATGTGACAGAAA...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000198464.3 |
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| CDS-3UTR GCA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGATGGCTTCCACCACTTaGAAATTTGACTTATTTTCA | + |
|
Preference number: 4 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKMASTT*KFDLFS Trigger: TGAAAATAAGTCAAATTTGCAAGTGGTGGAAGCCAT...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS TCA 90 bp | GAGACCAGCTGCATTGTACTGGTGATACTGGATCAACTCGGGGACTaGGGGGAAGAGATGTCTTTCGGTGATGTACCACTGTCCGGAGTC | + |
|
Preference number: 5 (lower is better) Translates to: ETSCIVLVILDQLGD*GEEMSFGDVPLSGV Trigger: GACTCCGGACAGTGGTACATCACCGAAAGACATCTCTTCCCCTCAGTCCCCGAGTTGATCCAGTATCACCAGTACAATGCAGCTGGTCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR CAA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTCCTTCATTGATGGCCTaGATGGCGACCGGGATATGT | + |
|
Preference number: 5 (lower is better) Translates to: VSVHLRDLGVISHLEGWCPSLMA*MATGIC Trigger: ACATATCCCGGTCGCCATCAAGGCCATCAATGAAGG...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR CAA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTGACATGGAACCTTCATaGATGGCCTTGATGGCGACC | + |
|
Preference number: 5 (lower is better) Translates to: VSVHLRDLGVISHLEGWCDMEPS*MALMAT Trigger: GGTCGCCATCAAGGCCATCAATGAAGGTTCCATGTC...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS TCA 90 bp | GGGATTAAGCCTTCATTCCCGAAGCGGTCTCTGGCCTTCCACCAGTaGGGATCACACCTCTCCAATATCAGATATTCCTCCGCTCTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: GIKPSFPKRSLAFHQ*GSHLSNIRYSSALF Trigger: GAAGAGAGCGGAGGAATATCTGATATTGGAGAGGTGTGATCCTCACTGGTGGAAGGCCAGAGACCGCTTCGGGAATGAAGGCTTAATCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000198464.3 |
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| CDS-3UTR CAA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTCCCGCCTCTGTTGGATaGAGTTTTGCCCATCAGTTT | + |
|
Preference number: 5 (lower is better) Translates to: VSVHLRDLGVISHLEGWCPASVG*SFAHQF Trigger: AAACTGATGGGCAAAACTCAATCCAACAGAGGCGGG...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 |
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| CDS-3UTR CAA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTCCCTTCACATATGTCTaGGCACATGCTCAAGAGCAG | + |
|
Preference number: 5 (lower is better) Translates to: VSVHLRDLGVISHLEGWCPFTYV*AHAQEQ Trigger: CTGCTCTTGAGCATGTGCCAAGACATATGTGAAGGG...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR CAA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTATACAGCCGGAAACCTaGAGAAATGGCTTCCACCAC | + |
|
Preference number: 5 (lower is better) Translates to: VSVHLRDLGVISHLEGWCIQPET*RNGFHH Trigger: GTGGTGGAAGCCATTTCTCAAGGTTTCCGGCTGTAT...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS TCA 90 bp | ATGTTCTTGTGGTACCATCCGAAGCGGTCTCTGGCCTTCCACCAGTaGGGATCACACCTCTCCAATATCAGATATTCCTCCGCTCTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: MFLWYHPKRSLAFHQ*GSHLSNIRYSSALF Trigger: GAAGAGAGCGGAGGAATATCTGATATTGGAGAGGTGTGATCCTCACTGGTGGAAGGCCAGAGACCGCTTCGGATGGTACCACAAGAACAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197313.5 |
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| CDS-3UTR CAA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTCCACTTCCGATCTCCTaGACAAAAGCCAACTCTGAT | + |
|
Preference number: 5 (lower is better) Translates to: VSVHLRDLGVISHLEGWCPLPIS*TKANSD Trigger: ATCAGAGTTGGCTTTTGTCAAGGAGATCGGAAGTGG...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS GCA 90 bp | ACGGCCTCTGACGCTGGGAATGTTTTTCTGAGAGTTCTTCCTCTCTaGTCAGGCTTATCTGAGTTCTCACCTGTCTCTTCTGTACTGAGC | + |
|
Preference number: 5 (lower is better) Translates to: TASDAGNVFLRVLPL*SGLSEFSPVSSVLS Trigger: GCTCAGTACAGAAGAGACAGGTGAGAACTCAGATAAGCCTGAGCAGAGAGGAAGAACTCTCAGAAAAACATTCCCAGCGTCAGAGGCCGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 |
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| CDS-3UTR CAA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGGACATGGAACCTTCATaGATGGCCTTGATGGCGACC | + |
|
Preference number: 5 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKDMEPS*MALMAT Trigger: GGTCGCCATCAAGGCCATCAATGAAGGTTCCATGTC...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR CAA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGCCCGCCTCTGTTGGATaGAGTTTTGCCCATCAGTTT | + |
|
Preference number: 5 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKPASVG*SFAHQF Trigger: AAACTGATGGGCAAAACTCAATCCAACAGAGGCGGG...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 |
||
| CDS-3UTR CAA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGCCCTTCACATATGTCTaGGCACATGCTCAAGAGCAG | + |
|
Preference number: 5 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKPFTYV*AHAQEQ Trigger: CTGCTCTTGAGCATGTGCCAAGACATATGTGAAGGG...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR CAA 90 bp | GTCTCTGTACACTTAAGGGACCTGGGGGTCATCAGCCACTTGGAAGGTTGGTGTGACCAGACATCAGACTaGCTACTGTATTTGTTGAAA | + |
|
Preference number: 5 (lower is better) Translates to: VSVHLRDLGVISHLEGWCDQTSD*LLYLLK Trigger: TTTCAACAAATACAGTAGCAAGTCTGATGTCTGGTC...ACACCAACCTTCCAAGTGGCTGATGACCCCCAGGTCCCTTAAGTGTACAGAGAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR CAA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGATACAGCCGGAAACCTaGAGAAATGGCTTCCACCAC | + |
|
Preference number: 5 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKIQPET*RNGFHH Trigger: GTGGTGGAAGCCATTTCTCAAGGTTTCCGGCTGTAT...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS TCA 90 bp | ACTGATATATTCATCGTCCAAAACATACCTCGCCATGCCGAAGTCTaGGATCTTTACTACGCAGGCAGAACTGACCAAACAGTTCCTGGC | + |
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Preference number: 5 (lower is better) Translates to: TDIFIVQNIPRHAEV*DLYYAGRTDQTVPG Trigger: GCCAGGAACTGTTTGGTCAGTTCTGCCTGCGTAGTAAAGATCTCAGACTTCGGCATGGCGAGGTATGTTTTGGACGATGAATATATCAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS GCA 90 bp | AAGTGTCTCGAATCTCTCACGATAAAGGCACCTTCTTTAGCCTCTTaGCTCAATAGGCGTTCGGTCTGGTTTCTCGTAATGTTCTTGTGG | + |
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Preference number: 5 (lower is better) Translates to: KCLESLTIKAPSLAS*LNRRSVWFLVMFLW Trigger: CCACAAGAACATTACGAGAAACCAGACCGAACGCCTATTGAGGCAAGAGGCTAAAGAAGGTGCCTTTATCGTGAGAGATTCGAGACACTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR CAA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGCCACTTCCGATCTCCTaGACAAAAGCCAACTCTGAT | + |
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Preference number: 5 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKPLPIS*TKANSD Trigger: ATCAGAGTTGGCTTTTGTCAAGGAGATCGGAAGTGG...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS-3UTR CAA 90 bp | CAGGATGTGGAAGGAGCTCAGAAGTGTAGTTCAGAAGTCTCACACTTGTACAAGGACCAGACATCAGACTaGCTACTGTATTTGTTGAAA | + |
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Preference number: 5 (lower is better) Translates to: QDVEGAQKCSSEVSHLYKDQTSD*LLYLLK Trigger: TTTCAACAAATACAGTAGCAAGTCTGATGTCTGGTC...CTTGTACAAGTGTGAGACTTCTGAACTACACTTCTGAGCTCCTTCCACATCCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS CAA 90 bp | GGGCAGCGGCTTGCGCTTCGAGGGTTGCACCCCGCCTCTGTTGGATaGAGTTTTGCCCATCAGTTTGGCGAACCACGGCCTCTGACGCTG | + |
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Preference number: 6 (lower is better) Translates to: GQRLALRGLHPASVG*SFAHQFGEPRPLTL Trigger: CAGCGTCAGAGGCCGTGGTTCGCCAAACTGATGGGCAAAACTCAATCCAACAGAGGCGGGGTGCAACCCTCGAAGCGCAAGCCGCTGCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 |
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| CDS CCA 72 bp | GCGGCTTGCGCTTCGAGGGTTGCACCCCGCCTCTGTTaGATTGAGTTTTGCCCATCAGTTTGGCGAACCACG | + |
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Preference number: 6 (lower is better) Translates to: AACASRVAPRLC*IEFCPSVWRTT Trigger: CGTGGTTCGCCAAACTGATGGGCAAAACTCAATCCAACAGAGGCGGGGTGCAACCCTCGAAGCGCAAGCCGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 |
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| CDS CAA 72 bp | CTTGCGCTTCGAGGGTTGCACCCCGCCTCTGTTGGATaGAGTTTTGCCCATCAGTTTGGCGAACCACGGCCT | + |
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Preference number: 6 (lower is better) Translates to: LALRGLHPASVG*SFAHQFGEPRP Trigger: AGGCCGTGGTTCGCCAAACTGATGGGCAAAACTCAATCCAACAGAGGCGGGGTGCAACCCTCGAAGCGCAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 |
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| CDS GCA 72 bp | CCAGGTACGCCATCCCTTCACATATGTCTTGGCACATaGTCAAGAGCAGCGCCTTCTGAAGCTGGCCTTTCC | + |
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Preference number: 6 (lower is better) Translates to: PGTPSLHICLGT*SRAAPSEAGLS Trigger: GGAAAGGCCAGCTTCAGAAGGCGCTGCTCTTGAGCATGTGCCAAGACATATGTGAAGGGATGGCGTACCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS CCA 72 bp | GGCTCTCATGCCAGCAACTGTACATCACTCTGTATATaGTCATGGGGGCCAGGTGAGGACGATACAGCCGGA | + |
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Preference number: 6 (lower is better) Translates to: GSHASNCTSLCI*SWGPGEDDTAG Trigger: TCCGGCTGTATCGTCCTCACCTGGCCCCCATGACCATATACAGAGTGATGTACAGTTGCTGGCATGAGAGCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS CCA 72 bp | CCCCGCCTCTGTTGGATTGAGTTTTGCCCATCAGTTTaGCGAACCACGGCCTCTGACGCTGGGAATGTTTTT | + |
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Preference number: 6 (lower is better) Translates to: PRLCWIEFCPSV*RTTASDAGNVF Trigger: AAAAACATTCCCAGCGTCAGAGGCCGTGGTTCGCCAAACTGATGGGCAAAACTCAATCCAACAGAGGCGGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 |
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| CDS TCA 72 bp | CCTTCATTCCCGAAGCGGTCTCTGGCCTTCCACCAGTaGGGATCACACCTCTCCAATATCAGATATTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: PSFPKRSLAFHQ*GSHLSNIRYSS Trigger: GGAGGAATATCTGATATTGGAGAGGTGTGATCCTCACTGGTGGAAGGCCAGAGACCGCTTCGGGAATGAAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000198464.3 |
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| CDS TCA 72 bp | CGGAGACGAGATATGAGACCAGCTGCATTGTACTGGTaGTACTGGATCAACTCGGGGACTGAGGGGAAGAGA | + |
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Preference number: 6 (lower is better) Translates to: RRRDMRPAALYW*YWINSGTEGKR Trigger: TCTCTTCCCCTCAGTCCCCGAGTTGATCCAGTATCACCAGTACAATGCAGCTGGTCTCATATCTCGTCTCCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS TCA 72 bp | TGGTACCATCCGAAGCGGTCTCTGGCCTTCCACCAGTaGGGATCACACCTCTCCAATATCAGATATTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: WYHPKRSLAFHQ*GSHLSNIRYSS Trigger: GGAGGAATATCTGATATTGGAGAGGTGTGATCCTCACTGGTGGAAGGCCAGAGACCGCTTCGGATGGTACCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197313.5 |
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| CDS CCA 72 bp | TGCTTGGGATTAAGCCTTCATTCCCGAAGCGGTCTCTaGCCTTCCACCAGTGAGGATCACACCTCTCCAATA | + |
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Preference number: 6 (lower is better) Translates to: CLGLSLHSRSGL*PSTSEDHTSPI Trigger: TATTGGAGAGGTGTGATCCTCACTGGTGGAAGGCCAGAGACCGCTTCGGGAATGAAGGCTTAATCCCAAGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000198464.3 |
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| CDS CCA 72 bp | CATGCCAGCAACTGTACATCACTCTGTATATGGTCATaGGGGCCAGGTGAGGACGATACAGCCGGAAACCTT | + |
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Preference number: 6 (lower is better) Translates to: HASNCTSLCIWS*GPGEDDTAGNL Trigger: AAGGTTTCCGGCTGTATCGTCCTCACCTGGCCCCCATGACCATATACAGAGTGATGTACAGTTGCTGGCATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS GCA 72 bp | CCTCTCCAATATCAGATATTCCTCCGCTCTCTTCAGTaGCAAATTACCAGGCTCCCGAGGCAGGAAGTCATA | + |
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Preference number: 6 (lower is better) Translates to: PLQYQIFLRSLQ*QITRLPRQEVI Trigger: TATGACTTCCTGCCTCGGGAGCCTGGTAATTTGGCACTGAAGAGAGCGGAGGAATATCTGATATTGGAGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS GCA 72 bp | AGCTCAGCAAATGTCGGACGGCCTTTAGGGCTCTCATaGCAGCAACTGTACATCACTCTGTATATGGTCATG | + |
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Preference number: 6 (lower is better) Translates to: SSANVGRPLGLS*QQLYITLYMVM Trigger: CATGACCATATACAGAGTGATGTACAGTTGCTGGCATGAGAGCCCTAAAGGCCGTCCGACATTTGCTGAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS TCA 72 bp | AGTGGACAACCCCAAACTGACCACTTCCGATCTCCTTaGCAAAAGCCAACTCTGATGGATCTATCTCCCACT | + |
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Preference number: 6 (lower is better) Translates to: SGQPQTDHFRSP*QKPTLMDLSPT Trigger: AGTGGGAGATAGATCCATCAGAGTTGGCTTTTGTCAAGGAGATCGGAAGTGGTCAGTTTGGGGTTGTCCACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS TCA 72 bp | TTCATCGTCCAAAACATACCTCGCCATGCCGAAGTCTaGGATCTTTACTACGCAGGCAGAACTGACCAAACA | + |
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Preference number: 6 (lower is better) Translates to: FIVQNIPRHAEV*DLYYAGRTDQT Trigger: TGTTTGGTCAGTTCTGCCTGCGTAGTAAAGATCTCAGACTTCGGCATGGCGAGGTATGTTTTGGACGATGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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| CDS GCA 72 bp | GACGCTGGGAATGTTTTTCTGAGAGTTCTTCCTCTCTaGTCAGGCTTATCTGAGTTCTCACCTGTCTCTTCT | + |
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Preference number: 6 (lower is better) Translates to: DAGNVFLRVLPL*SGLSEFSPVSS Trigger: AGAAGAGACAGGTGAGAACTCAGATAAGCCTGAGCAGAGAGGAAGAACTCTCAGAAAAACATTCCCAGCGTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 |
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| CDS GCA 72 bp | TTTCTAAGTTGGCGAGTCTGTTTTCTGTCACATAGTTaGTTGGGATTAAGCCTTCATTCCCGAAGCGGTCTC | + |
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Preference number: 6 (lower is better) Translates to: FLSWRVCFLSHS*LGLSLHSRSGL Trigger: GAGACCGCTTCGGGAATGAAGGCTTAATCCCAAGCAACTATGTGACAGAAAACAGACTCGCCAACTTAGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000198464.3 |
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| CDS CCA 72 bp | CTTGCTACTGTATTTGTTGAAATGAAAGACTTCAGGTaGGCACCACTTGACTGGGAACTTAGCTCCAGAAGA | + |
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Preference number: 6 (lower is better) Translates to: LATVFVEMKDFR*APLDWELSSRR Trigger: TCTTCTGGAGCTAAGTTCCCAGTCAAGTGGTGCCCACCTGAAGTCTTTCATTTCAACAAATACAGTAGCAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000113604.10 ENSMUST00000169534.6 ENSMUST00000197313.5 ENSMUST00000198464.3 |
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