RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TWIST1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035799

Ensembl transcript IDs: ENSMUST00000049089.7

Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp TCCTTCAGAGGAAGTATGGTTTTTAAGGAATTCACTGACTATGATTTTGCAGGCTGCCTTTCCTGTCAGTaGCTGATTGGCAAGACCTCT +
Preference number: 2 (lower is better)
Translates to: SFRGSMVFKEFTDYDFAGCLSCQ*LIGKTS
Trigger: AGAGGTCTTGCCAATCAGCCACTGACAGGAAAGGCA...GCCTGCAAAATCATAGTCAGTGAATTCCTTAAAAACCATACTTCCTCTGAAGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049089.7
3UTR-3UTR CCA 90 bp TCCTTCAGAGGAAGTATGGTTTTTAAGGAATTCACTGACTATGATTTTGCAGGCCTGTCAGTGGCTGATTaGCAAGACCTCTTGAGAATG +
Preference number: 2 (lower is better)
Translates to: SFRGSMVFKEFTDYDFAGLSVAD*QDLLRM
Trigger: CATTCTCAAGAGGTCTTGCCAATCAGCCACTGACAG...GCCTGCAAAATCATAGTCAGTGAATTCCTTAAAAACCATACTTCCTCTGAAGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049089.7
3UTR-3UTR TCA 90 bp TCCTTCAGAGGAAGTATGGTTTTTAAGGAATTCACTGACTATGATTTTGCAGGCATTGGCAAGACCTCTTaGGAATGCATGCATGAAAAA +
Preference number: 2 (lower is better)
Translates to: SFRGSMVFKEFTDYDFAGIGKTS*ECMHEK
Trigger: TTTTTCATGCATGCATTCTCAAGAGGTCTTGCCAAT...GCCTGCAAAATCATAGTCAGTGAATTCCTTAAAAACCATACTTCCTCTGAAGGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049089.7
3UTR-3UTR GCA 90 bp TCCTTCAGAGGAAGTATGGTTTTTAAGGAATTCACTGACTATGATTTTGCAGGCTGTGAATTTGGTCTCTaGTCTTCTAATTTCCATGAA +
Preference number: 2 (lower is better)
Translates to: SFRGSMVFKEFTDYDFAGCEFGL*SSNFHE
Trigger: TTCATGGAAATTAGAAGAGCAGAGACCAAATTCACA...GCCTGCAAAATCATAGTCAGTGAATTCCTTAAAAACCATACTTCCTCTGAAGGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049089.7
3UTR CCA 72 bp AACGAGTGTTCAGACTTCTATCAGAATGCAGAGGTGTaGGGGGTCTGCTGCTGCCCCTCTGGGAATCTCTGT +
Preference number: 3 (lower is better)
Translates to: NECSDFYQNAEV*GVCCCPSGNLC
Trigger: ACAGAGATTCCCAGAGGGGCAGCAGCAGACCCCCCACACCTCTGCATTCTGATAGAAGTCTGAACACTCGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049089.7
3UTR TCA 72 bp GAGCCAGTCCACAGGGATGCCTTTCCTGTCAGTGGCTaGTTGGCAAGACCTCTTGAGAATGCATGCATGAAA +
Preference number: 3 (lower is better)
Translates to: EPVHRDAFPVSG*LARPLENACMK
Trigger: TTTCATGCATGCATTCTCAAGAGGTCTTGCCAATCAGCCACTGACAGGAAAGGCATCCCTGTGGACTGGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049089.7
CDS-3UTR CCA 90 bp TTTAAAAGTGTGCCCCACGCCCTGATTCTTGTGAATTTGGTCTCTGCTCTTCTAGTCGGCCGGAGAGACTaGCGAGCTGGACACGTCCTG +
Preference number: 4 (lower is better)
Translates to: FKSVPHALILVNLVSALLVGRRD*RAGHVL
Trigger: CAGGACGTGTCCAGCTCGCCAGTCTCTCCGGCCGAC...TAGAAGAGCAGAGACCAAATTCACAAGAATCAGGGCGTGGGGCACACTTTTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049089.7
CDS-3UTR GCA 90 bp TCCTTCAGAGGAAGTATGGTTTTTAAGGAATTCACTGACTATGATTTTGCAGGCCGCCCGCAGATTTCTTaGCGCGCTTGCCCTGGGCCG +
Preference number: 4 (lower is better)
Translates to: SFRGSMVFKEFTDYDFAGRPQIS*RACPGP
Trigger: CGGCCCAGGGCAAGCGCGGCAAGAAATCTGCGGGCG...GCCTGCAAAATCATAGTCAGTGAATTCCTTAAAAACCATACTTCCTCTGAAGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049089.7
CDS-3UTR GCA 90 bp TTTAAAAGTGTGCCCCACGCCCTGATTCTTGTGAATTTGGTCTCTGCTCTTCTAATGACCCGCTGGGTCTaGAGCTCCTCGTACGACTGC +
Preference number: 4 (lower is better)
Translates to: FKSVPHALILVNLVSALLMTRWV*SSSYDC
Trigger: GCAGTCGTACGAGGAGCTGCAGACCCAGCGGGTCAT...TAGAAGAGCAGAGACCAAATTCACAAGAATCAGGGCGTGGGGCACACTTTTAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049089.7
CDS-3UTR GCA 90 bp TCCTTCAGAGGAAGTATGGTTTTTAAGGAATTCACTGACTATGATTTTGCAGGCCGTTCAGCGACTGCGTaGGCTGGCGCTCCCGCACGT +
Preference number: 4 (lower is better)
Translates to: SFRGSMVFKEFTDYDFAGRSATA*AGAPAR
Trigger: ACGTGCGGGAGCGCCAGCGCACGCAGTCGCTGAACG...GCCTGCAAAATCATAGTCAGTGAATTCCTTAAAAACCATACTTCCTCTGAAGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049089.7
CDS-3UTR CCA 90 bp TCCTTCAGAGGAAGTATGGTTTTTAAGGAATTCACTGACTATGATTTTGCAGGCAGCGACTGCGTGCGCTaGCGCTCCCGCACGTTAGCC +
Preference number: 4 (lower is better)
Translates to: SFRGSMVFKEFTDYDFAGSDCVR*RSRTLA
Trigger: GGCTAACGTGCGGGAGCGCCAGCGCACGCAGTCGCT...GCCTGCAAAATCATAGTCAGTGAATTCCTTAAAAACCATACTTCCTCTGAAGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049089.7
CDS-3UTR GCA 90 bp TCCTTCAGAGGAAGTATGGTTTTTAAGGAATTCACTGACTATGATTTTGCAGGCGCTCCTCCTCGCTGTTaGTCAGGCTGTCGTCGGCCG +
Preference number: 4 (lower is better)
Translates to: SFRGSMVFKEFTDYDFAGAPPRC*SGCRRP
Trigger: CGGCCGACGACAGCCTGAGCAACAGCGAGGAGGAGC...GCCTGCAAAATCATAGTCAGTGAATTCCTTAAAAACCATACTTCCTCTGAAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049089.7
CDS-3UTR CCA 90 bp TTTAAAAGTGTGCCCCACGCCCTGATTCTTGTGAATTTGGTCTCTGCTCTTCTATTAGCCATGACCCGCTaGGTCTGCAGCTCCTCGTAC +
Preference number: 4 (lower is better)
Translates to: FKSVPHALILVNLVSALLLAMTR*VCSSSY
Trigger: GTACGAGGAGCTGCAGACCCAGCGGGTCATGGCTAA...TAGAAGAGCAGAGACCAAATTCACAAGAATCAGGGCGTGGGGCACACTTTTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049089.7
CDS-3UTR CCA 90 bp TCCTTCAGAGGAAGTATGGTTTTTAAGGAATTCACTGACTATGATTTTGCAGGCAGTGGGACGCGGACATaGACCAGGCCCCCTCCATCC +
Preference number: 4 (lower is better)
Translates to: SFRGSMVFKEFTDYDFAGSGTRT*TRPPPS
Trigger: GGATGGAGGGGGCCTGGTCCATGTCCGCGTCCCACT...GCCTGCAAAATCATAGTCAGTGAATTCCTTAAAAACCATACTTCCTCTGAAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000049089.7
CDS-3UTR TCA 90 bp TTTAAAAGTGTGCCCCACGCCCTGATTCTTGTGAATTTGGTCTCTGCTCTTCTAACCTGGCCGCCAGTTTaGGGGTCTGAATCTTGCTCA +
Preference number: 4 (lower is better)
Translates to: FKSVPHALILVNLVSALLTWPPV*GSESCS
Trigger: TGAGCAAGATTCAGACCCTCAAACTGGCGGCCAGGT...TAGAAGAGCAGAGACCAAATTCACAAGAATCAGGGCGTGGGGCACACTTTTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000049089.7
CDS-3UTR GCA 90 bp TTTAAAAGTGTGCCCCACGCCCTGATTCTTGTGAATTTGGTCTCTGCTCTTCTACACATAGCTGCAGCTTaGCATCTTGGAGTCCAGCTC +
Preference number: 4 (lower is better)
Translates to: FKSVPHALILVNLVSALLHIAAA*HLGVQL
Trigger: GAGCTGGACTCCAAGATGGCAAGCTGCAGCTATGTG...TAGAAGAGCAGAGACCAAATTCACAAGAATCAGGGCGTGGGGCACACTTTTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049089.7
CDS-3UTR GCA 90 bp TCCTTCAGAGGAAGTATGGTTTTTAAGGAATTCACTGACTATGATTTTGCAGGCCGTGGGCCACATAGCTaGAGCTTGCCATCTTGGAGT +
Preference number: 4 (lower is better)
Translates to: SFRGSMVFKEFTDYDFAGRGPHS*SLPSWS
Trigger: ACTCCAAGATGGCAAGCTGCAGCTATGTGGCCCACG...GCCTGCAAAATCATAGTCAGTGAATTCCTTAAAAACCATACTTCCTCTGAAGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049089.7
CDS-3UTR CAA 90 bp TTTAAAAGTGTGCCCCACGCCCTGATTCTTGTGAATTTGGTCTCTGCTCTTCTATTGCGAGCCCCGCGCTaGCCGCTCGCCGGCTGCTGC +
Preference number: 5 (lower is better)
Translates to: FKSVPHALILVNLVSALLLRAPR*PLAGCC
Trigger: GCAGCAGCCGGCGAGCGGCAAGCGCGGGGCTCGCAA...TAGAAGAGCAGAGACCAAATTCACAAGAATCAGGGCGTGGGGCACACTTTTAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000049089.7
CDS-3UTR CAA 90 bp TTTAAAAGTGTGCCCCACGCCCTGATTCTTGTGAATTTGGTCTCTGCTCTTCTACCGCCCGCAGATTTCTaGCCGCGCTTGCCCTGGGCC +
Preference number: 5 (lower is better)
Translates to: FKSVPHALILVNLVSALLPPADF*PRLPWA
Trigger: GGCCCAGGGCAAGCGCGGCAAGAAATCTGCGGGCGG...TAGAAGAGCAGAGACCAAATTCACAAGAATCAGGGCGTGGGGCACACTTTTAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049089.7
CDS-3UTR CAA 90 bp TTTAAAAGTGTGCCCCACGCCCTGATTCTTGTGAATTTGGTCTCTGCTCTTCTACTGCAGCTTGCCATCTaGGAGTCCAGCTCGTCGCTC +
Preference number: 5 (lower is better)
Translates to: FKSVPHALILVNLVSALLLQLAI*ESSSSL
Trigger: GAGCGACGAGCTGGACTCCAAGATGGCAAGCTGCAG...TAGAAGAGCAGAGACCAAATTCACAAGAATCAGGGCGTGGGGCACACTTTTAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049089.7
CDS-3UTR CAA 90 bp TTTAAAAGTGTGCCCCACGCCCTGATTCTTGTGAATTTGGTCTCTGCTCTTCTACCACATAGCTGCAGCTaGCCATCTTGGAGTCCAGCT +
Preference number: 5 (lower is better)
Translates to: FKSVPHALILVNLVSALLPHSCS*PSWSPA
Trigger: AGCTGGACTCCAAGATGGCAAGCTGCAGCTATGTGG...TAGAAGAGCAGAGACCAAATTCACAAGAATCAGGGCGTGGGGCACACTTTTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049089.7
CDS GCA 72 bp CGCTGCCGCCCGCGCTGCGCCGACTGCTGCGTCTCTTaGGAGCCCCGCGCTTGCCGCTCGCCGGCTGCTGCC +
Preference number: 6 (lower is better)
Translates to: RCRPRCADCCVS*EPRACRSPAAA
Trigger: GGCAGCAGCCGGCGAGCGGCAAGCGCGGGGCTCGCAAGAGACGCAGCAGTCGGCGCAGCGCGGGCGGCAGCG
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049089.7
CDS CAA 72 bp GCGCTGCCGCCCGCGCTGCGCCGACTGCTGCGTCTCTaGCGAGCCCCGCGCTTGCCGCTCGCCGGCTGCTGC +
Preference number: 6 (lower is better)
Translates to: ALPPALRRLLRL*RAPRLPLAGCC
Trigger: GCAGCAGCCGGCGAGCGGCAAGCGCGGGGCTCGCAAGAGACGCAGCAGTCGGCGCAGCGCGGGCGGCAGCGC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049089.7
CDS CAA 90 bp CCGCCCGCGCTGCGCCGACTGCTGCGTCTCTTGCGAGCCCCGCGCTaGCCGCTCGCCGGCTGCTGCCGGTCCGGCTCCTCCTCGCTGTTG +
Preference number: 6 (lower is better)
Translates to: PPALRRLLRLLRAPR*PLAGCCRSGSSSLL
Trigger: CAACAGCGAGGAGGAGCCGGACCGGCAGCAGCCGGCGAGCGGCAAGCGCGGGGCTCGCAAGAGACGCAGCAGTCGGCGCAGCGCGGGCGG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049089.7
CDS CAA 72 bp CTGCGCCGACTGCTGCGTCTCTTGCGAGCCCCGCGCTaGCCGCTCGCCGGCTGCTGCCGGTCCGGCTCCTCC +
Preference number: 6 (lower is better)
Translates to: LRRLLRLLRAPR*PLAGCCRSGSS
Trigger: GGAGGAGCCGGACCGGCAGCAGCCGGCGAGCGGCAAGCGCGGGGCTCGCAAGAGACGCAGCAGTCGGCGCAG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049089.7
CDS GCA 72 bp TGGCGCTCCCGCACGTTAGCCATGACCCGCTGGGTCTaGAGCTCCTCGTACGACTGCGGGCTCCCGCCCCCG +
Preference number: 6 (lower is better)
Translates to: WRSRTLAMTRWV*SSSYDCGLPPP
Trigger: CGGGGGCGGGAGCCCGCAGTCGTACGAGGAGCTGCAGACCCAGCGGGTCATGGCTAACGTGCGGGAGCGCCA
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000049089.7
CDS CCA 72 bp AGGGCGGCGAACGCCTCGTTCAGCGACTGCGTGCGCTaGCGCTCCCGCACGTTAGCCATGACCCGCTGGGTC +
Preference number: 6 (lower is better)
Translates to: RAANASFSDCVR*RSRTLAMTRWV
Trigger: GACCCAGCGGGTCATGGCTAACGTGCGGGAGCGCCAGCGCACGCAGTCGCTGAACGAGGCGTTCGCCGCCCT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049089.7