Pregenerated sensors for TWF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022451Ensembl transcript IDs: ENSMUST00000023087.13
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCCTGCTGCAGTTTGCCTTTCTCCACCGCGGCAGACAGCCCTTCCTaGGCATGCTCAAAGCAATCAGCTGCCCGCCTCCTCCCAGGCTCC | + |
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Preference number: 1 (lower is better) Translates to: PCCSLPFSTAADSPS*ACSKQSAARLLPGS Trigger: GGAGCCTGGGAGGAGGCGGGCAGCTGATTGCTTTGAGCATGCTCAGGAAGGGCTGTCTGCCGCGGTGGAGAAAGGCAAACTGCAGCAGGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| 3UTR GCA 90 bp | CACCGCGGCAGACAGCCCTTCCTGAGCATGCTCAAAGCAATCAGCTaGCCGCCTCCTCCCAGGCTCCTTAACACACTCGACAGGTGTGAG | + |
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Preference number: 1 (lower is better) Translates to: HRGRQPFLSMLKAIS*PPPPRLLNTLDRCE Trigger: CTCACACCTGTCGAGTGTGTTAAGGAGCCTGGGAGGAGGCGGGCAGCTGATTGCTTTGAGCATGCTCAGGAAGGGCTGTCTGCCGCGGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| 3UTR TCA 90 bp | TCCCCCACTGGCTCTGGATCCAGGACACGTAGTGCTCCCTCTGCTTaGAGTGGCAGCTGTGGTGATGGTCTAGACAGGGCTCCAGGACTC | + |
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Preference number: 1 (lower is better) Translates to: SPTGSGSRTRSAPSA*SGSCGDGLDRAPGL Trigger: GAGTCCTGGAGCCCTGTCTAGACCATCACCACAGCTGCCACTTCAAGCAGAGGGAGCACTACGTGTCCTGGATCCAGAGCCAGTGGGGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| 3UTR GCA 90 bp | ATGCTACTACAATGGAGAGGAGGGACAGGAAGCCCTGCTGCAGTTTaGCTTTCTCCACCGCGGCAGACAGCCCTTCCTGAGCATGCTCAA | + |
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Preference number: 1 (lower is better) Translates to: MLLQWRGGTGSPAAV*LSPPRQTALPEHAQ Trigger: TTGAGCATGCTCAGGAAGGGCTGTCTGCCGCGGTGGAGAAAGGCAAACTGCAGCAGGGCTTCCTGTCCCTCCTCTCCATTGTAGTAGCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| 3UTR TCA 90 bp | CTGCACTGTCTGGTACCTTTCGAGCTTCAGTGTGAACTTCGTTTCTaGGATCTGATGCTACTACAATGGAGAGGAGGGACAGGAAGCCCT | + |
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Preference number: 1 (lower is better) Translates to: LHCLVPFELQCELRF*DLMLLQWRGGTGSP Trigger: AGGGCTTCCTGTCCCTCCTCTCCATTGTAGTAGCATCAGATCTCAGAAACGAAGTTCACACTGAAGCTCGAAAGGTACCAGACAGTGCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| 3UTR-3UTR GCA 90 bp | GGTCTAGACAGGGCTCCAGGACTCTCAGTGCAGCACTCTATGGCACGTGTGACACTCAAAGCAATCAGCTaGCCGCCTCCTCCCAGGCTC | + |
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Preference number: 2 (lower is better) Translates to: GLDRAPGLSVQHSMARVTLKAIS*PPPPRL Trigger: GAGCCTGGGAGGAGGCGGGCAGCTGATTGCTTTGAG...TGTCACACGTGCCATAGAGTGCTGCACTGAGAGTCCTGGAGCCCTGTCTAGACC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| 3UTR-3UTR GCA 90 bp | CAGGGCTCCAGGACTCTCAGTGCAGCACTCTATGGCACGTGTGACAACTGTACAATGGGATGGGAAGCCTaGACTGTCTGGTACCTTTCG | + |
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Preference number: 2 (lower is better) Translates to: QGSRTLSAALYGTCDNCTMGWEA*TVWYLS Trigger: CGAAAGGTACCAGACAGTGCAGGCTTCCCATCCCAT...TGTACAGTTGTCACACGTGCCATAGAGTGCTGCACTGAGAGTCCTGGAGCCCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| 3UTR-3UTR CCA 90 bp | GGTCTAGACAGGGCTCCAGGACTCTCAGTGCAGCACTCTATGGCACGTGTGACACTGATGCTACTACAATaGAGAGGAGGGACAGGAAGC | + |
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Preference number: 2 (lower is better) Translates to: GLDRAPGLSVQHSMARVTLMLLQ*RGGTGS Trigger: GCTTCCTGTCCCTCCTCTCCATTGTAGTAGCATCAG...TGTCACACGTGCCATAGAGTGCTGCACTGAGAGTCCTGGAGCCCTGTCTAGACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| 3UTR-3UTR CCA 90 bp | AGCTGCCCGCCTCCTCCCAGGCTCCTTAACACACTCGACAGGTGTGAGTATCTCGAACTGGCCCACCTATaGGAAATATTGAAGATTATG | + |
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Preference number: 2 (lower is better) Translates to: SCPPPPRLLNTLDRCEYLELAHL*EILKIM Trigger: CATAATCTTCAATATTTCCCATAGGTGGGCCAGTTC...GAGATACTCACACCTGTCGAGTGTGTTAAGGAGCCTGGGAGGAGGCGGGCAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| 3UTR CAA 90 bp | TGGCTTTCGAACATGAACGTCTGGCGTCAGCCCTCTGGACTCACTTaGGAAATAGATAGCTCGAAAGTTCTGCAAAGACCTTACTGGACG | + |
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Preference number: 2 (lower is better) Translates to: WLSNMNVWRQPSGLT*EIDSSKVLQRPYWT Trigger: CGTCCAGTAAGGTCTTTGCAGAACTTTCGAGCTATCTATTTCCAAAGTGAGTCCAGAGGGCTGACGCCAGACGTTCATGTTCGAAAGCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| 3UTR-3UTR TCA 90 bp | CTGAACACTTGCTCCCAAGCAACAGGACAATTTGCTTTAAGATACATGGTTTCACTTGGCTTTCGAACATaGACGTCTGGCGTCAGCCCT | + |
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Preference number: 2 (lower is better) Translates to: LNTCSQATGQFALRYMVSLGFRT*TSGVSP Trigger: AGGGCTGACGCCAGACGTTCATGTTCGAAAGCCAAG...TGAAACCATGTATCTTAAAGCAAATTGTCCTGTTGCTTGGGAGCAAGTGTTCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| 3UTR-3UTR GCA 90 bp | AAATTTCCATCAGCCTGTAATTCCTCTTATGGTCTATGTGAATACACGCTGAATGACAGGAAGCCCTGCTaGAGTTTGCCTTTCTCCACC | + |
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Preference number: 2 (lower is better) Translates to: KFPSACNSSYGLCEYTLNDRKPC*SLPFST Trigger: GGTGGAGAAAGGCAAACTGCAGCAGGGCTTCCTGTC...ATTCAGCGTGTATTCACATAGACCATAAGAGGAATTACAGGCTGATGGAAATTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| 3UTR-3UTR CCA 90 bp | CTGAACACTTGCTCCCAAGCAACAGGACAATTTGCTTTAAGATACATGGTTTCACTGGCGTCAGCCCTCTaGACTCACTTTGGAAATAGA | + |
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Preference number: 2 (lower is better) Translates to: LNTCSQATGQFALRYMVSLASAL*THFGNR Trigger: TCTATTTCCAAAGTGAGTCCAGAGGGCTGACGCCAG...TGAAACCATGTATCTTAAAGCAAATTGTCCTGTTGCTTGGGAGCAAGTGTTCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| 3UTR-3UTR TCA 90 bp | AAATTTCCATCAGCCTGTAATTCCTCTTATGGTCTATGTGAATACACGCTGAATGCAGACAGCCCTTCCTaGGCATGCTCAAAGCAATCA | + |
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Preference number: 2 (lower is better) Translates to: KFPSACNSSYGLCEYTLNADSPS*ACSKQS Trigger: TGATTGCTTTGAGCATGCTCAGGAAGGGCTGTCTGC...ATTCAGCGTGTATTCACATAGACCATAAGAGGAATTACAGGCTGATGGAAATTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| 3UTR-3UTR CCA 90 bp | AAATTTCCATCAGCCTGTAATTCCTCTTATGGTCTATGTGAATACACGCTGAATAATAAGGCTCTGCAATaGGTGCTTCATATTTCATAC | + |
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Preference number: 2 (lower is better) Translates to: KFPSACNSSYGLCEYTLNNKALQ*VLHISY Trigger: GTATGAAATATGAAGCACCCATTGCAGAGCCTTATT...ATTCAGCGTGTATTCACATAGACCATAAGAGGAATTACAGGCTGATGGAAATTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| 3UTR GCA 72 bp | GCTACTACAATGGAGAGGAGGGACAGGAAGCCCTGCTaGAGTTTGCCTTTCTCCACCGCGGCAGACAGCCCT | + |
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Preference number: 3 (lower is better) Translates to: ATTMERRDRKPC*SLPFSTAADSP Trigger: AGGGCTGTCTGCCGCGGTGGAGAAAGGCAAACTGCAGCAGGGCTTCCTGTCCCTCCTCTCCATTGTAGTAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| 3UTR TCA 72 bp | GGCTCTGGATCCAGGACACGTAGTGCTCCCTCTGCTTaGAGTGGCAGCTGTGGTGATGGTCTAGACAGGGCT | + |
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Preference number: 3 (lower is better) Translates to: GSGSRTRSAPSA*SGSCGDGLDRA Trigger: AGCCCTGTCTAGACCATCACCACAGCTGCCACTTCAAGCAGAGGGAGCACTACGTGTCCTGGATCCAGAGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| 3UTR GCA 72 bp | AGACAGCCCTTCCTGAGCATGCTCAAAGCAATCAGCTaGCCGCCTCCTCCCAGGCTCCTTAACACACTCGAC | + |
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Preference number: 3 (lower is better) Translates to: RQPFLSMLKAIS*PPPPRLLNTLD Trigger: GTCGAGTGTGTTAAGGAGCCTGGGAGGAGGCGGGCAGCTGATTGCTTTGAGCATGCTCAGGAAGGGCTGTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| 3UTR GCA 72 bp | GATGCTACTACAATGGAGAGGAGGGACAGGAAGCCCTaGTGCAGTTTGCCTTTCTCCACCGCGGCAGACAGC | + |
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Preference number: 3 (lower is better) Translates to: DATTMERRDRKP*CSLPFSTAADS Trigger: GCTGTCTGCCGCGGTGGAGAAAGGCAAACTGCAGCAGGGCTTCCTGTCCCTCCTCTCCATTGTAGTAGCATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| 3UTR-3UTR CAA 90 bp | CAGGGCTCCAGGACTCTCAGTGCAGCACTCTATGGCACGTGTGACAACTGTACACCCTCTGGACTCACTTaGGAAATAGATAGCTCGAAA | + |
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Preference number: 3 (lower is better) Translates to: QGSRTLSAALYGTCDNCTPSGLT*EIDSSK Trigger: TTTCGAGCTATCTATTTCCAAAGTGAGTCCAGAGGG...TGTACAGTTGTCACACGTGCCATAGAGTGCTGCACTGAGAGTCCTGGAGCCCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| 3UTR TCA 72 bp | CTGGTACCTTTCGAGCTTCAGTGTGAACTTCGTTTCTaGGATCTGATGCTACTACAATGGAGAGGAGGGACA | + |
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Preference number: 3 (lower is better) Translates to: LVPFELQCELRF*DLMLLQWRGGT Trigger: TGTCCCTCCTCTCCATTGTAGTAGCATCAGATCTCAGAAACGAAGTTCACACTGAAGCTCGAAAGGTACCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| 3UTR CCA 72 bp | TTTTTGAGCGATCCTTGGCTTTCGAACATGAACGTCTaGCGTCAGCCCTCTGGACTCACTTTGGAAATAGAT | + |
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Preference number: 3 (lower is better) Translates to: FLSDPWLSNMNV*RQPSGLTLEID Trigger: ATCTATTTCCAAAGTGAGTCCAGAGGGCTGACGCCAGACGTTCATGTTCGAAAGCCAAGGATCGCTCAAAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| 3UTR TCA 72 bp | ATGAAATGTACATTACTGACATTATCTTGTGCAGCATaGAGTTCAGGTCGAGGACTTCCAGGTCCTGGACAC | + |
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Preference number: 3 (lower is better) Translates to: MKCTLLTLSCAA*SSGRGLPGPGH Trigger: GTGTCCAGGACCTGGAAGTCCTCGACCTGAACTTCATGCTGCACAAGATAATGTCAGTAATGTACATTTCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| 3UTR GCA 72 bp | TCATACCATGAAATGTACATTACTGACATTATCTTGTaGAGCATGAAGTTCAGGTCGAGGACTTCCAGGTCC | + |
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Preference number: 3 (lower is better) Translates to: SYHEMYITDIIL*SMKFRSRTSRS Trigger: GGACCTGGAAGTCCTCGACCTGAACTTCATGCTGCACAAGATAATGTCAGTAATGTACATTTCATGGTATGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| CDS-3UTR CCA 90 bp | AGCTGCCCGCCTCCTCCCAGGCTCCTTAACACACTCGACAGGTGTGAGTATCTCACGCCTTGGAGTGTCTaGTGCTTTGTGTCCACACTC | + |
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Preference number: 4 (lower is better) Translates to: SCPPPPRLLNTLDRCEYLTPWSV*CFVSTL Trigger: GAGTGTGGACACAAAGCACCAGACACTCCAAGGCGT...GAGATACTCACACCTGTCGAGTGTGTTAAGGAGCCTGGGAGGAGGCGGGCAGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| CDS-3UTR CCA 90 bp | GGTCTAGACAGGGCTCCAGGACTCTCAGTGCAGCACTCTATGGCACGTGTGACAGGAAAGGCTACGCCTTaGAGTGTCTGGTGCTTTGTG | + |
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Preference number: 4 (lower is better) Translates to: GLDRAPGLSVQHSMARVTGKATP*SVWCFV Trigger: CACAAAGCACCAGACACTCCAAGGCGTAGCCTTTCC...TGTCACACGTGCCATAGAGTGCTGCACTGAGAGTCCTGGAGCCCTGTCTAGACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| CDS-3UTR CCA 90 bp | ACAATGGAGAGGAGGGACAGGAAGCCCTGCTGCAGTTTGCCTTTCTCCACCGCGTATGTGCATGCTGCTTaGGGTGGACTTCATCGTACA | + |
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Preference number: 4 (lower is better) Translates to: TMERRDRKPCCSLPFSTAYVHAA*GGLHRT Trigger: TGTACGATGAAGTCCACCCCAAGCAGCATGCACATA...CGCGGTGGAGAAAGGCAAACTGCAGCAGGGCTTCCTGTCCCTCCTCTCCATTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| CDS-3UTR GCA 90 bp | GAGGAGGGACAGGAAGCCCTGCTGCAGTTTGCCTTTCTCCACCGCGGCAGACAGGAGCCAACCACCAGTTaGTCATTTTCGATAGATATT | + |
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Preference number: 4 (lower is better) Translates to: EEGQEALLQFAFLHRGRQEPTTS*SFSIDI Trigger: AATATCTATCGAAAATGAGCAACTGGTGGTTGGCTC...CTGTCTGCCGCGGTGGAGAAAGGCAAACTGCAGCAGGGCTTCCTGTCCCTCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| CDS-3UTR TCA 90 bp | GCTCTGGATCCAGGACACGTAGTGCTCCCTCTGCTTGAAGTGGCAGCTGTGGTGTCTGAGAGTCTAACCTaGATAATACATAGCACGGCT | + |
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Preference number: 4 (lower is better) Translates to: ALDPGHVVLPLLEVAAVVSESLT*IIHSTA Trigger: AGCCGTGCTATGTATTATTCAGGTTAGACTCTCAGA...CACCACAGCTGCCACTTCAAGCAGAGGGAGCACTACGTGTCCTGGATCCAGAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| CDS-3UTR TCA 90 bp | ACAATGGAGAGGAGGGACAGGAAGCCCTGCTGCAGTTTGCCTTTCTCCACCGCGCTATCTCAATCTTTCTaGTCACATCCATCTGTAGCT | + |
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Preference number: 4 (lower is better) Translates to: TMERRDRKPCCSLPFSTALSQSF*SHPSVA Trigger: AGCTACAGATGGATGTGATCAGAAAGATTGAGATAG...CGCGGTGGAGAAAGGCAAACTGCAGCAGGGCTTCCTGTCCCTCCTCTCCATTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| 3UTR CAA 72 bp | AACATGAACGTCTGGCGTCAGCCCTCTGGACTCACTTaGGAAATAGATAGCTCGAAAGTTCTGCAAAGACCT | + |
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Preference number: 4 (lower is better) Translates to: NMNVWRQPSGLT*EIDSSKVLQRP Trigger: AGGTCTTTGCAGAACTTTCGAGCTATCTATTTCCAAAGTGAGTCCAGAGGGCTGACGCCAGACGTTCATGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| CDS-3UTR TCA 90 bp | ATTTTAGATCTGAACACTTGCTCCCAAGCAACAGGACAATTTGCTTTAAGATACCTGTTCCCAGGAGTCTaGAGGTGGACTACAGGAGCC | + |
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Preference number: 4 (lower is better) Translates to: ILDLNTCSQATGQFALRYLFPGV*RWTTGA Trigger: GGCTCCTGTAGTCCACCTTCAGACTCCTGGGAACAG...GTATCTTAAAGCAAATTGTCCTGTTGCTTGGGAGCAAGTGTTCAGATCTAAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| CDS-3UTR CCA 90 bp | ATTTTAGATCTGAACACTTGCTCCCAAGCAACAGGACAATTTGCTTTAAGATACGCATGCTGCTTGGGGTaGACTTCATCGTACAGGAAA | + |
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Preference number: 4 (lower is better) Translates to: ILDLNTCSQATGQFALRYACCLG*TSSYRK Trigger: TTTCCTGTACGATGAAGTCCACCCCAAGCAGCATGC...GTATCTTAAAGCAAATTGTCCTGTTGCTTGGGAGCAAGTGTTCAGATCTAAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| CDS-3UTR TCA 90 bp | ATTTTAGATCTGAACACTTGCTCCCAAGCAACAGGACAATTTGCTTTAAGATACCCAACTGCACATAGTTaGGCTGCTTCTTACTCAGCT | + |
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Preference number: 4 (lower is better) Translates to: ILDLNTCSQATGQFALRYPTAHS*AASYSA Trigger: AGCTGAGTAAGAAGCAGCTCAACTATGTGCAGTTGG...GTATCTTAAAGCAAATTGTCCTGTTGCTTGGGAGCAAGTGTTCAGATCTAAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| CDS-3UTR GCA 90 bp | AAATTTCCATCAGCCTGTAATTCCTCTTATGGTCTATGTGAATACACGCTGAATAAAACTCTGCTTATGTaGATGCTGCTTGGGGTGGAC | + |
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Preference number: 4 (lower is better) Translates to: KFPSACNSSYGLCEYTLNKTLLM*MLLGVD Trigger: GTCCACCCCAAGCAGCATGCACATAAGCAGAGTTTT...ATTCAGCGTGTATTCACATAGACCATAAGAGGAATTACAGGCTGATGGAAATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| CDS-3UTR GCA 90 bp | CTGAACACTTGCTCCCAAGCAACAGGACAATTTGCTTTAAGATACATGGTTTCAGGTTTAGCAAAACTCTaGTTATGTGCATGCTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: LNTCSQATGQFALRYMVSGLAKL*LCACCL Trigger: CAAGCAGCATGCACATAAGCAGAGTTTTGCTAAACC...TGAAACCATGTATCTTAAAGCAAATTGTCCTGTTGCTTGGGAGCAAGTGTTCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| 3UTR CAA 72 bp | ATTTCATACCATGAAATGTACATTACTGACATTATCTaGTGCAGCATGAAGTTCAGGTCGAGGACTTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: ISYHEMYITDII*CSMKFRSRTSR Trigger: CCTGGAAGTCCTCGACCTGAACTTCATGCTGCACAAGATAATGTCAGTAATGTACATTTCATGGTATGAAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| CDS TCA 90 bp | CAGCAGGGGCAAGACAAAGGAGTCGTAGTCCTGTTCCCAGGAGTCTaGAGGTGGACTACAGGAGCCAACCACCAGTTGCTCATTTTCGAT | + |
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Preference number: 5 (lower is better) Translates to: QQGQDKGVVVLFPGV*RWTTGANHQLLIFD Trigger: ATCGAAAATGAGCAACTGGTGGTTGGCTCCTGTAGTCCACCTTCAGACTCCTGGGAACAGGACTACGACTCCTTTGTCTTGCCCCTGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| CDS-3UTR CAA 90 bp | CCAGGTCCTGGACACGATGGTCCACTTCAGAACTTCTCAGTTATGGCTCTGCAGTTATGTGCATGCTGCTaGGGGTGGACTTCATCGTAC | + |
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Preference number: 5 (lower is better) Translates to: PGPGHDGPLQNFSVMALQLCACC*GWTSSY Trigger: GTACGATGAAGTCCACCCCAAGCAGCATGCACATAA...CTGCAGAGCCATAACTGAGAAGTTCTGAAGTGGACCATCGTGTCCAGGACCTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| CDS-3UTR CAA 90 bp | CAGGGCTCCAGGACTCTCAGTGCAGCACTCTATGGCACGTGTGACAACTGTACAGGAGCCAACCACCAGTaGCTCATTTTCGATAGATAT | + |
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Preference number: 5 (lower is better) Translates to: QGSRTLSAALYGTCDNCTGANHQ*LIFDRY Trigger: ATATCTATCGAAAATGAGCAACTGGTGGTTGGCTCC...TGTACAGTTGTCACACGTGCCATAGAGTGCTGCACTGAGAGTCCTGGAGCCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| CDS-3UTR CAA 90 bp | ACAATGGAGAGGAGGGACAGGAAGCCCTGCTGCAGTTTGCCTTTCTCCACCGCGTCAGTTTGGACCTCGTaGATTTTAATCTGCCGTAAT | + |
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Preference number: 5 (lower is better) Translates to: TMERRDRKPCCSLPFSTASVWTS*ILICRN Trigger: ATTACGGCAGATTAAAATCAACGAGGTCCAAACTGA...CGCGGTGGAGAAAGGCAAACTGCAGCAGGGCTTCCTGTCCCTCCTCTCCATTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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| CDS GCA 72 bp | CCTTTCGGTTTAGCAAAACTCTGCTTATGTGCATGCTaGTTGGGGTGGACTTCATCGTACAGGAAATCCGCA | + |
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Preference number: 6 (lower is better) Translates to: PFGLAKLCLCAC*LGWTSSYRKSA Trigger: TGCGGATTTCCTGTACGATGAAGTCCACCCCAAGCAGCATGCACATAAGCAGAGTTTTGCTAAACCGAAAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023087.13 |
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