Pregenerated sensors for TVP23B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000014177Ensembl transcript IDs: ENSMUST00000014321.5
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGCACACCTGACACTGTTTCCAGACACACAGACTTCCTGGCCCCATaGGGTTTCCTTCTTTTAAATAAGCTTCTAAGTAACAAACACACC | + |
|
Preference number: 1 (lower is better) Translates to: GTPDTVSRHTDFLAP*GFLLLNKLLSNKHT Trigger: GGTGTGTTTGTTACTTAGAAGCTTATTTAAAAGAAGGAAACCCCATGGGGCCAGGAAGTCTGTGTGTCTGGAAACAGTGTCAGGTGTGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000014321.5 |
||
| 3UTR-3UTR TCA 90 bp | TGCGAAGGTCCACTCACACGTGCAAAGGACTTGCTGCTGCTACAGGACCATCTACACCCAAGGCACACCTaGCACTGTTTCCAGACACAC | + |
|
Preference number: 2 (lower is better) Translates to: CEGPLTRAKDLLLLQDHLHPRHT*HCFQTH Trigger: GTGTGTCTGGAAACAGTGTCAGGTGTGCCTTGGGTG...TAGATGGTCCTGTAGCAGCAGCAAGTCCTTTGCACGTGTGAGTGGACCTTCGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000014321.5 |
||
| 3UTR-3UTR TCA 90 bp | ACAGTCTATGGGTCAGGATGCGAAGGTCCACTCACACGTGCAAAGGACTTGCTGCACTCTGCAACAGACTaGGCTCTAAACACTAAGAAT | + |
|
Preference number: 2 (lower is better) Translates to: TVYGSGCEGPLTRAKDLLHSATD*ALNTKN Trigger: ATTCTTAGTGTTTAGAGCTCAGTCTGTTGCAGAGTG...CAGCAAGTCCTTTGCACGTGTGAGTGGACCTTCGCATCCTGACCCATAGACTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000014321.5 |
||
| 3UTR-3UTR GCA 90 bp | AATGCTATGCAAACACAGAATTTGAGACAGACTGAACACCCATTCCTACAGTCTAAACACACCCCACTCTaGAACAGACTGAGCTCTAAA | + |
|
Preference number: 2 (lower is better) Translates to: NAMQTQNLRQTEHPFLQSKHTPL*NRLSSK Trigger: TTTAGAGCTCAGTCTGTTGCAGAGTGGGGTGTGTTT...AGACTGTAGGAATGGGTGTTCAGTCTGTCTCAAATTCTGTGTTTGCATAGCATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000014321.5 |
||
| 3UTR TCA 72 bp | AGGACCATCTATCCAGACAGACACCCAAGGCACACCTaGCACTGTTTCCAGACACACAGACTTCCTGGCCCC | + |
|
Preference number: 3 (lower is better) Translates to: RTIYPDRHPRHT*HCFQTHRLPGP Trigger: GGGGCCAGGAAGTCTGTGTGTCTGGAAACAGTGTCAGGTGTGCCTTGGGTGTCTGTCTGGATAGATGGTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000014321.5 |
||
| 3UTR GCA 72 bp | GCGAAGGTCCACTCACACGTGCAAAGGACTTGCTGCTaGTACAGGACCATCTATCCAGACAGACACCCAAGG | + |
|
Preference number: 3 (lower is better) Translates to: AKVHSHVQRTCC*YRTIYPDRHPR Trigger: CCTTGGGTGTCTGTCTGGATAGATGGTCCTGTAGCAGCAGCAAGTCCTTTGCACGTGTGAGTGGACCTTCGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000014321.5 |
||
| 3UTR GCA 72 bp | GATGCGAAGGTCCACTCACACGTGCAAAGGACTTGCTaGTGCTACAGGACCATCTATCCAGACAGACACCCA | + |
|
Preference number: 3 (lower is better) Translates to: DAKVHSHVQRTC*CYRTIYPDRHP Trigger: TGGGTGTCTGTCTGGATAGATGGTCCTGTAGCAGCAGCAAGTCCTTTGCACGTGTGAGTGGACCTTCGCATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000014321.5 |
||
| 3UTR TCA 72 bp | AAACCATGTACAGGAATGCTATGCAAACACAGAATTTaGGACAGACTGAACACCCATTCCTACAGTCTATGG | + |
|
Preference number: 3 (lower is better) Translates to: KPCTGMLCKHRI*DRLNTHSYSLW Trigger: CCATAGACTGTAGGAATGGGTGTTCAGTCTGTCTCAAATTCTGTGTTTGCATAGCATTCCTGTACATGGTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000014321.5 |
||
| 3UTR TCA 72 bp | ACAACTACAAAGGTCCCACTTATGCCAAATGGACCTTaGGTGAATGACTCATTACCAACTAAAACCAAAATT | + |
|
Preference number: 3 (lower is better) Translates to: TTTKVPLMPNGP*VNDSLPTKTKI Trigger: AATTTTGGTTTTAGTTGGTAATGAGTCATTCACTCAAGGTCCATTTGGCATAAGTGGGACCTTTGTAGTTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000014321.5 |
||
| CDS-3UTR TCA 90 bp | CCCAAGGCACACCTGACACTGTTTCCAGACACACAGACTTCCTGGCCCCATGGGGGACGGGGCAGGCGATaGGTCCTAGCCAAAAGATTC | + |
|
Preference number: 4 (lower is better) Translates to: PKAHLTLFPDTQTSWPHGGRGRR*VLAKRF Trigger: GAATCTTTTGGCTAGGACTCATCGCCTGCCCCGTCC...CCCATGGGGCCAGGAAGTCTGTGTGTCTGGAAACAGTGTCAGGTGTGCCTTGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000014321.5 |
||
| CDS-3UTR CCA 90 bp | GATGCGAAGGTCCACTCACACGTGCAAAGGACTTGCTGCTGCTACAGGACCATCACCCGGAAGAACAGATaGAAGAAGGATGCCACGGGG | + |
|
Preference number: 4 (lower is better) Translates to: DAKVHSHVQRTCCCYRTITRKNR*KKDATG Trigger: CCCCGTGGCATCCTTCTTCCATCTGTTCTTCCGGGT...GATGGTCCTGTAGCAGCAGCAAGTCCTTTGCACGTGTGAGTGGACCTTCGCATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000014321.5 |
||
| CDS-3UTR TCA 90 bp | TCTATGGGTCAGGATGCGAAGGTCCACTCACACGTGCAAAGGACTTGCTGCTGCGTTGTCTTGAGGCGTTaGCTTTCTGGACTCAAACAC | + |
|
Preference number: 4 (lower is better) Translates to: SMGQDAKVHSHVQRTCCCVVLRR*LSGLKH Trigger: GTGTTTGAGTCCAGAAAGTCAACGCCTCAAGACAAC...GCAGCAGCAAGTCCTTTGCACGTGTGAGTGGACCTTCGCATCCTGACCCATAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000014321.5 |
||
| CDS-3UTR TCA 90 bp | GATGCGAAGGTCCACTCACACGTGCAAAGGACTTGCTGCTGCTACAGGACCATCATTGTTTTGTTGTCTTaGGGCGTTGACTTTCTGGAC | + |
|
Preference number: 4 (lower is better) Translates to: DAKVHSHVQRTCCCYRTIIVLLS*GVDFLD Trigger: GTCCAGAAAGTCAACGCCTCAAGACAACAAAACAAT...GATGGTCCTGTAGCAGCAGCAAGTCCTTTGCACGTGTGAGTGGACCTTCGCATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000014321.5 |
||
| CDS-3UTR GCA 90 bp | GATGCGAAGGTCCACTCACACGTGCAAAGGACTTGCTGCTGCTACAGGACCATCTTAAGTTCTTCTTGCTaGCCACTTTACACCGGATAT | + |
|
Preference number: 4 (lower is better) Translates to: DAKVHSHVQRTCCCYRTILSSSC*PLYTGY Trigger: ATATCCGGTGTAAAGTGGGCAGCAAGAAGAACTTAA...GATGGTCCTGTAGCAGCAGCAAGTCCTTTGCACGTGTGAGTGGACCTTCGCATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000014321.5 |
||
| CDS-3UTR GCA 90 bp | TGCGAAGGTCCACTCACACGTGCAAAGGACTTGCTGCTGCTACAGGACCATCTATTTTGTCTTAGAAACTaGTTTCCAAGATACGACGTA | + |
|
Preference number: 4 (lower is better) Translates to: CEGPLTRAKDLLLLQDHLFCLRN*FPRYDV Trigger: TACGTCGTATCTTGGAAAGCAGTTTCTAAGACAAAA...TAGATGGTCCTGTAGCAGCAGCAAGTCCTTTGCACGTGTGAGTGGACCTTCGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000014321.5 |
||
| 3UTR CAA 72 bp | AAAACCATGTACAGGAATGCTATGCAAACACAGAATTaGAGACAGACTGAACACCCATTCCTACAGTCTATG | + |
|
Preference number: 4 (lower is better) Translates to: KTMYRNAMQTQN*RQTEHPFLQSM Trigger: CATAGACTGTAGGAATGGGTGTTCAGTCTGTCTCAAATTCTGTGTTTGCATAGCATTCCTGTACATGGTTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000014321.5 |
||
| CDS-3UTR CAA 90 bp | CTATGGGTCAGGATGCGAAGGTCCACTCACACGTGCAAAGGACTTGCTGCTGCTACTCGGCCTCAGAAATaGTTTTGTTGTCTTGAGGCG | + |
|
Preference number: 5 (lower is better) Translates to: LWVRMRRSTHTCKGLAAATRPQK*FCCLEA Trigger: CGCCTCAAGACAACAAAACAATTTCTGAGGCCGAGT...AGCAGCAGCAAGTCCTTTGCACGTGTGAGTGGACCTTCGCATCCTGACCCATAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000014321.5 |
||
| CDS-3UTR CAA 90 bp | TCTATGGGTCAGGATGCGAAGGTCCACTCACACGTGCAAAGGACTTGCTGCTGCTGTTGTCTTGAGGCGTaGACTTTCTGGACTCAAACA | + |
|
Preference number: 5 (lower is better) Translates to: SMGQDAKVHSHVQRTCCCCCLEA*TFWTQT Trigger: TGTTTGAGTCCAGAAAGTCAACGCCTCAAGACAACA...GCAGCAGCAAGTCCTTTGCACGTGTGAGTGGACCTTCGCATCCTGACCCATAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000014321.5 |
||