Pregenerated sensors for TUSC3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000118664Ensembl transcript IDs: ENSMUST00000239508.1, ENSMUST00000239509.1, ENSMUST00000239510.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AAAGCAAGCCACCAACCAGTGACACTAACAGGGCCAAAGCAATGGTaGCTGAGTAGTTGGGTGGCCGGAAAACTCGAATATGAACATCCG | + |
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Preference number: 5 (lower is better) Translates to: KASHQPVTLTGPKQW*LSSWVAGKLEYEHP Trigger: CGGATGTTCATATTCGAGTTTTCCGGCCACCCAACTACTCAGGCACCATTGCTTTGGCCCTGTTAGTGTCACTGGTTGGTGGCTTGCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000239508.1 ENSMUST00000239509.1 |
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| CDS CCA 90 bp | GATAAAGCAAGCCACCAACCAGTGACACTAACAGGGCCAAAGCAATaGTGCCTGAGTAGTTGGGTGGCCGGAAAACTCGAATATGAACAT | + |
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Preference number: 5 (lower is better) Translates to: DKASHQPVTLTGPKQ*CLSSWVAGKLEYEH Trigger: ATGTTCATATTCGAGTTTTCCGGCCACCCAACTACTCAGGCACCATTGCTTTGGCCCTGTTAGTGTCACTGGTTGGTGGCTTGCTTTATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000239508.1 ENSMUST00000239509.1 |
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| CDS CCA 72 bp | AGCCACCAACCAGTGACACTAACAGGGCCAAAGCAATaGTGCCTGAGTAGTTGGGTGGCCGGAAAACTCGAA | + |
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Preference number: 6 (lower is better) Translates to: SHQPVTLTGPKQ*CLSSWVAGKLE Trigger: TTCGAGTTTTCCGGCCACCCAACTACTCAGGCACCATTGCTTTGGCCCTGTTAGTGTCACTGGTTGGTGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000239508.1 ENSMUST00000239509.1 |
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| CDS TCA 72 bp | AGAAGAAGACCACCAAGCCCAATCCCACGAGGCAAATaGTGCGTCTTTTCCCGACATCCCCTTTGGAAGTTG | + |
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Preference number: 6 (lower is better) Translates to: RRRPPSPIPRGK*CVFSRHPLWKL Trigger: CAACTTCCAAAGGGGATGTCGGGAAAAGACGCATCATTTGCCTCGTGGGATTGGGCTTGGTGGTCTTCTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000239508.1 ENSMUST00000239509.1 |
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| CDS GCA 72 bp | CACCAACCAGTGACACTAACAGGGCCAAAGCAATGGTaGCTGAGTAGTTGGGTGGCCGGAAAACTCGAATAT | + |
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Preference number: 6 (lower is better) Translates to: HQPVTLTGPKQW*LSSWVAGKLEY Trigger: ATATTCGAGTTTTCCGGCCACCCAACTACTCAGGCACCATTGCTTTGGCCCTGTTAGTGTCACTGGTTGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000239508.1 ENSMUST00000239509.1 |
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| CDS CCA 72 bp | ACACTAACAGGGCCAAAGCAATGGTGCCTGAGTAGTTaGGTGGCCGGAAAACTCGAATATGAACATCCGTCC | + |
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Preference number: 6 (lower is better) Translates to: TLTGPKQWCLSS*VAGKLEYEHPS Trigger: GGACGGATGTTCATATTCGAGTTTTCCGGCCACCCAACTACTCAGGCACCATTGCTTTGGCCCTGTTAGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000239508.1 ENSMUST00000239509.1 |
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| CDS TCA 72 bp | CTTTTACAAACTTCCGGAACTTGTCGCCGTTCATTCTaGAGATCGAGCGCCTGGAACTCCATTCCATCAGCT | + |
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Preference number: 6 (lower is better) Translates to: LLQTSGTCRRSF*RSSAWNSIPSA Trigger: AGCTGATGGAATGGAGTTCCAGGCGCTCGATCTTCAGAATGAACGGCGACAAGTTCCGGAAGTTTGTAAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000239508.1 ENSMUST00000239509.1 ENSMUST00000239510.1 |
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| CDS CCA 72 bp | GCTCACTTGTCCATTGTGTGGGTTCTTATGAGCATATaGAGGTCCACGGATATGATTCCACATCTGGCCAGA | + |
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Preference number: 6 (lower is better) Translates to: AHLSIVWVLMSI*RSTDMIPHLAR Trigger: TCTGGCCAGATGTGGAATCATATCCGTGGACCTCCATATGCTCATAAGAACCCACACAATGGACAAGTGAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000239508.1 ENSMUST00000239509.1 |
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| CDS CAA 72 bp | ACGAGGCAAATGATGCGTCTTTTCCCGACATCCCCTTaGGAAGTTGCTGCTTCATTTAGAAGAACCATCCCC | + |
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Preference number: 6 (lower is better) Translates to: TRQMMRLFPTSP*EVAASFRRTIP Trigger: GGGGATGGTTCTTCTAAATGAAGCAGCAACTTCCAAAGGGGATGTCGGGAAAAGACGCATCATTTGCCTCGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000239508.1 ENSMUST00000239509.1 |
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| CDS GCA 72 bp | GTATCAGCTCTCTTGGGTCTGCCTTTTGAAGGAAAATaGATGAATGTGGGAGCGGAGTTCATGTTGAGCTGT | + |
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Preference number: 6 (lower is better) Translates to: VSALLGLPFEGK*MNVGAEFMLSC Trigger: ACAGCTCAACATGAACTCCGCTCCCACATTCATGCATTTTCCTTCAAAAGGCAGACCCAAGAGAGCTGATAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000239508.1 ENSMUST00000239509.1 |
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| CDS CCA 72 bp | GCTGCTTCCATGAATGTAGCTCACTTGTCCATTGTGTaGGTTCTTATGAGCATATGGAGGTCCACGGATATG | + |
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Preference number: 6 (lower is better) Translates to: AASMNVAHLSIV*VLMSIWRSTDM Trigger: CATATCCGTGGACCTCCATATGCTCATAAGAACCCACACAATGGACAAGTGAGCTACATTCATGGAAGCAGC 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000239508.1 ENSMUST00000239509.1 |
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| CDS TCA 72 bp | CATTTTGCTAGCTGCTCAGCTGCAAATCCAATTCGTTaGAGGTCAAAAGTATCAGCTCTCTTGGGTCTGCCT | + |
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Preference number: 6 (lower is better) Translates to: HFASCSAANPIR*RSKVSALLGLP Trigger: AGGCAGACCCAAGAGAGCTGATACTTTTGACCTTCAACGAATTGGATTTGCAGCTGAGCAGCTAGCAAAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000239508.1 ENSMUST00000239509.1 |
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