Pregenerated sensors for TUSC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000010054Ensembl transcript IDs: ENSMUST00000010198.5, ENSMUST00000193418.2
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAACTGAAGGTTCTGGGCCAACGGAGTTTAGTTTATTCAAGGTTGTaGCACCAGCCTGGACTCCTGAATGGAAGCTACACCTTGATCCTG | + |
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Preference number: 1 (lower is better) Translates to: QLKVLGQRSLVYSRL*HQPGLLNGSYTLIL Trigger: CAGGATCAAGGTGTAGCTTCCATTCAGGAGTCCAGGCTGGTGCCACAACCTTGAATAAACTAAACTCCGTTGGCCCAGAACCTTCAGTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010198.5 |
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| 3UTR-3UTR GCA 90 bp | ATGCTTCTCCCACAAGCGGCTGGGGGAGACGGGCTGGTAATTCTGTCCTTAGCCTGCTGGGGCAGTGGGTaGTCGTGTCTGCCATGCCAC | + |
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Preference number: 2 (lower is better) Translates to: MLLPQAAGGDGLVILSLACWGSG*SCLPCH Trigger: GTGGCATGGCAGACACGAGCACCCACTGCCCCAGCA...GGCTAAGGACAGAATTACCAGCCCGTCTCCCCCAGCCGCTTGTGGGAGAAGCAT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000010198.5 |
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| 3UTR-3UTR GCA 90 bp | ATAGCTACTGGCACCAGCCCCAGTCGTTTCTTACCACTAGGTGGTGGACTGCCTACGTGTCTCCTGTCATaGTTCTCCCACAAGCGGCTG | + |
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Preference number: 2 (lower is better) Translates to: IATGTSPSRFLPLGGGLPTCLLS*FSHKRL Trigger: CAGCCGCTTGTGGGAGAAGCATGACAGGAGACACGT...AGGCAGTCCACCACCTAGTGGTAAGAAACGACTGGGGCTGGTGCCAGTAGCTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010198.5 |
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| 3UTR-3UTR CCA 90 bp | AGCCCTCACCAGCCACCAACCTCTTATTGTTCAGACATCCGCCAATACCAGTTAGTTTATTCAAGGTTGTaGCACCAGCCTGGACTCCTG | + |
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Preference number: 2 (lower is better) Translates to: SPHQPPTSYCSDIRQYQLVYSRL*HQPGLL Trigger: CAGGAGTCCAGGCTGGTGCCACAACCTTGAATAAAC...TAACTGGTATTGGCGGATGTCTGAACAATAAGAGGTTGGTGGCTGGTGAGGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010198.5 |
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| 3UTR CAA 90 bp | TTACAACTGAAGGTTCTGGGCCAACGGAGTTTAGTTTATTCAAGGTaGTGGCACCAGCCTGGACTCCTGAATGGAAGCTACACCTTGATC | + |
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Preference number: 2 (lower is better) Translates to: LQLKVLGQRSLVYSR*WHQPGLLNGSYTLI Trigger: GATCAAGGTGTAGCTTCCATTCAGGAGTCCAGGCTGGTGCCACAACCTTGAATAAACTAAACTCCGTTGGCCCAGAACCTTCAGTTGTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010198.5 |
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| 3UTR GCA 72 bp | AACCAGGCATTCCTGACCGGCACGTGTCTCCTGTCATaGTTCTCCCACAAGCGGCTGGGGGAGACGGGCTGG | + |
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Preference number: 3 (lower is better) Translates to: NQAFLTGTCLLS*FSHKRLGETGW Trigger: CCAGCCCGTCTCCCCCAGCCGCTTGTGGGAGAAGCATGACAGGAGACACGTGCCGGTCAGGAATGCCTGGTT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000010198.5 |
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| 3UTR CCA 72 bp | GCACGTGTCTCCTGTCATGCTTCTCCCACAAGCGGCTaGGGGAGACGGGCTGGTAATTCTGTCCTTAGCCCT | + |
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Preference number: 3 (lower is better) Translates to: ARVSCHASPTSG*GRRAGNSVLSP Trigger: AGGGCTAAGGACAGAATTACCAGCCCGTCTCCCCCAGCCGCTTGTGGGAGAAGCATGACAGGAGACACGTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010198.5 |
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| 3UTR-3UTR CAA 90 bp | ATGCTTCTCCCACAAGCGGCTGGGGGAGACGGGCTGGTAATTCTGTCCTTAGCCTTAGTTTATTCAAGGTaGTGGCACCAGCCTGGACTC | + |
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Preference number: 3 (lower is better) Translates to: MLLPQAAGGDGLVILSLALVYSR*WHQPGL Trigger: GAGTCCAGGCTGGTGCCACAACCTTGAATAAACTAA...GGCTAAGGACAGAATTACCAGCCCGTCTCCCCCAGCCGCTTGTGGGAGAAGCAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000010198.5 |
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| 3UTR TCA 72 bp | CCCGGCCTGTACCCTCTCAACTTGAGGGCAACTGGTTaGAATCAAGAGAGATCAGTCCAGCCCTGGGTGAAA | + |
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Preference number: 3 (lower is better) Translates to: PGLYPLNLRATG*NQERSVQPWVK Trigger: TTTCACCCAGGGCTGGACTGATCTCTCTTGATTTCAACCAGTTGCCCTCAAGTTGAGAGGGTACAGGCCGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010198.5 |
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| 3UTR CCA 72 bp | GTGGTGGACTGCCTCTCCCCTACAACTGGGGATTTGTaGGACTGGTGCAAAGACAAGGGAGACGACGAATAT | + |
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Preference number: 3 (lower is better) Translates to: VVDCLSPTTGDL*DWCKDKGDDEY Trigger: ATATTCGTCGTCTCCCTTGTCTTTGCACCAGTCCCACAAATCCCCAGTTGTAGGGGAGAGGCAGTCCACCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000010198.5 |
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| 3UTR CCA 72 bp | GACTGCCTCTCCCCTACAACTGGGGATTTGTGGGACTaGTGCAAAGACAAGGGAGACGACGAATATGTGGTT | + |
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Preference number: 3 (lower is better) Translates to: DCLSPTTGDLWD*CKDKGDDEYVV Trigger: AACCACATATTCGTCGTCTCCCTTGTCTTTGCACCAGTCCCACAAATCCCCAGTTGTAGGGGAGAGGCAGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000010198.5 |
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| 3UTR CCA 72 bp | GTTCTGGGCCAACGGAGTTTAGTTTATTCAAGGTTGTaGCACCAGCCTGGACTCCTGAATGGAAGCTACACC | + |
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Preference number: 3 (lower is better) Translates to: VLGQRSLVYSRL*HQPGLLNGSYT Trigger: GGTGTAGCTTCCATTCAGGAGTCCAGGCTGGTGCCACAACCTTGAATAAACTAAACTCCGTTGGCCCAGAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010198.5 |
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| 3UTR CCA 72 bp | ACGGAGTTTAGTTTATTCAAGGTTGTGGCACCAGCCTaGACTCCTGAATGGAAGCTACACCTTGATCCTGGG | + |
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Preference number: 3 (lower is better) Translates to: TEFSLFKVVAPA*TPEWKLHLDPG Trigger: CCCAGGATCAAGGTGTAGCTTCCATTCAGGAGTCCAGGCTGGTGCCACAACCTTGAATAAACTAAACTCCGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010198.5 |
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| CDS-3UTR TCA 90 bp | ATGCTTCTCCCACAAGCGGCTGGGGGAGACGGGCTGGTAATTCTGTCCTTAGCCTGGAGCCGCGGCGCGTaGATACGAAGGGAGGCACTG | + |
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Preference number: 4 (lower is better) Translates to: MLLPQAAGGDGLVILSLAWSRGA*IRREAL Trigger: CAGTGCCTCCCTTCGTATTCACGCGCCGCGGCTCCA...GGCTAAGGACAGAATTACCAGCCCGTCTCCCCCAGCCGCTTGTGGGAGAAGCAT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000010198.5 |
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| CDS-3UTR CCA 90 bp | ATGCTTCTCCCACAAGCGGCTGGGGGAGACGGGCTGGTAATTCTGTCCTTAGCCACGGGGAAATCCACGTaGATTCGGGGAGGATCCAGC | + |
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Preference number: 4 (lower is better) Translates to: MLLPQAAGGDGLVILSLATGKST*IRGGSS Trigger: GCTGGATCCTCCCCGAATCCACGTGGATTTCCCCGT...GGCTAAGGACAGAATTACCAGCCCGTCTCCCCCAGCCGCTTGTGGGAGAAGCAT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000010198.5 |
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| 3UTR CAA 72 bp | CCCCGGCCTGTACCCTCTCAACTTGAGGGCAACTGGTaGAAATCAAGAGAGATCAGTCCAGCCCTGGGTGAA | + |
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Preference number: 4 (lower is better) Translates to: PRPVPSQLEGNW*KSREISPALGE Trigger: TTCACCCAGGGCTGGACTGATCTCTCTTGATTTCAACCAGTTGCCCTCAAGTTGAGAGGGTACAGGCCGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010198.5 |
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| CDS-3UTR GCA 90 bp | ACTGAAGGTTCTGGGCCAACGGAGTTTAGTTTATTCAAGGTTGTGGCACCAGCCAGCTTGGCTCGCTTCTaGCCATTCTTGGTGACGATT | + |
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Preference number: 4 (lower is better) Translates to: TEGSGPTEFSLFKVVAPASLARF*PFLVTI Trigger: AATCGTCACCAAGAATGGGCAGAAGCGAGCCAAGCT...GGCTGGTGCCACAACCTTGAATAAACTAAACTCCGTTGGCCCAGAACCTTCAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010198.5 |
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| 3UTR CAA 72 bp | AAGGTTCTGGGCCAACGGAGTTTAGTTTATTCAAGGTaGTGGCACCAGCCTGGACTCCTGAATGGAAGCTAC | + |
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Preference number: 4 (lower is better) Translates to: KVLGQRSLVYSR*WHQPGLLNGSY Trigger: GTAGCTTCCATTCAGGAGTCCAGGCTGGTGCCACAACCTTGAATAAACTAAACTCCGTTGGCCCAGAACCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010198.5 |
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| CDS-3UTR TCA 90 bp | ACTGAAGGTTCTGGGCCAACGGAGTTTAGTTTATTCAAGGTTGTGGCACCAGCCTCTGCCCATTCTTGGTaGCGATTGTCTCCTCATAGA | + |
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Preference number: 4 (lower is better) Translates to: TEGSGPTEFSLFKVVAPASAHSW*RLSPHR Trigger: TCTATGAGGAGACAATCGTCACCAAGAATGGGCAGA...GGCTGGTGCCACAACCTTGAATAAACTAAACTCCGTTGGCCCAGAACCTTCAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010198.5 |
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| CDS GCA 90 bp | ATCGTAGAACATGGAGCCGCGGCGCGTGAATACGAAGGGAGGCACTaGTCGGGCTCGAGACCGCACCAGAGACTGCTCGGAGCCTGCCGC | + |
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Preference number: 5 (lower is better) Translates to: IVEHGAAAREYEGRH*SGSRPHQRLLGACR Trigger: GCGGCAGGCTCCGAGCAGTCTCTGGTGCGGTCTCGAGCCCGAGCAGTGCCTCCCTTCGTATTCACGCGCCGCGGCTCCATGTTCTACGAT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010198.5 ENSMUST00000193418.2 |
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| CDS TCA 90 bp | GAGCCAGATCTCCATCTTCATCGTAGAACATGGAGCCGCGGCGCGTaGATACGAAGGGAGGCACTGCTCGGGCTCGAGACCGCACCAGAG | + |
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Preference number: 5 (lower is better) Translates to: EPDLHLHRRTWSRGA*IRREALLGLETAPE Trigger: CTCTGGTGCGGTCTCGAGCCCGAGCAGTGCCTCCCTTCGTATTCACGCGCCGCGGCTCCATGTTCTACGATGAAGATGGAGATCTGGCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010198.5 ENSMUST00000193418.2 |
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| CDS-3UTR CAA 90 bp | TCACCAGCCACCAACCTCTTATTGTTCAGACATCCGCCAATACCAGTTAACACTTGTACCCGCCTCAGCTaGGCTCGCTTCTGCCCATTC | + |
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Preference number: 5 (lower is better) Translates to: SPATNLLLFRHPPIPVNTCTRLS*ARFCPF Trigger: GAATGGGCAGAAGCGAGCCAAGCTGAGGCGGGTACA...AGTGTTAACTGGTATTGGCGGATGTCTGAACAATAAGAGGTTGGTGGCTGGTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010198.5 |
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| CDS-3UTR CAA 90 bp | AGCCCTCACCAGCCACCAACCTCTTATTGTTCAGACATCCGCCAATACCAGTTACGCTTCTGCCCATTCTaGGTGACGATTGTCTCCTCA | + |
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Preference number: 5 (lower is better) Translates to: SPHQPPTSYCSDIRQYQLRFCPF*VTIVSS Trigger: TGAGGAGACAATCGTCACCAAGAATGGGCAGAAGCG...TAACTGGTATTGGCGGATGTCTGAACAATAAGAGGTTGGTGGCTGGTGAGGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010198.5 |
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| CDS GCA 72 bp | CATGGAGCCGCGGCGCGTGAATACGAAGGGAGGCACTaGTCGGGCTCGAGACCGCACCAGAGACTGCTCGGA | + |
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Preference number: 6 (lower is better) Translates to: HGAAAREYEGRH*SGSRPHQRLLG Trigger: TCCGAGCAGTCTCTGGTGCGGTCTCGAGCCCGAGCAGTGCCTCCCTTCGTATTCACGCGCCGCGGCTCCATG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010198.5 ENSMUST00000193418.2 |
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| CDS TCA 72 bp | CTCCATCTTCATCGTAGAACATGGAGCCGCGGCGCGTaGATACGAAGGGAGGCACTGCTCGGGCTCGAGACC | + |
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Preference number: 6 (lower is better) Translates to: LHLHRRTWSRGA*IRREALLGLET Trigger: GGTCTCGAGCCCGAGCAGTGCCTCCCTTCGTATTCACGCGCCGCGGCTCCATGTTCTACGATGAAGATGGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010198.5 ENSMUST00000193418.2 |
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