RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TUSC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000054000

Ensembl transcript IDs: ENSMUST00000066774.6

Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TTCTCCATCAGGCCAACGGATTTGGCGCCTGGAAGTGCCCTTGGGTaGGGCTGGAGTTCAGGAGCTCAGGACTTCAAACTTCCGCGTGCT +
Preference number: 1 (lower is better)
Translates to: FSIRPTDLAPGSALG*GWSSGAQDFKLPRA
Trigger: AGCACGCGGAAGTTTGAAGTCCTGAGCTCCTGAACTCCAGCCCCACCCAAGGGCACTTCCAGGCGCCAAATCCGTTGGCCTGATGGAGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
3UTR CCA 90 bp AACTGGGAAACTCTTGCTTCTCTTTCTCCATCAGGCCAACGGATTTaGCGCCTGGAAGTGCCCTTGGGTGGGGCTGGAGTTCAGGAGCTC +
Preference number: 1 (lower is better)
Translates to: NWETLASLSPSGQRI*RLEVPLGGAGVQEL
Trigger: GAGCTCCTGAACTCCAGCCCCACCCAAGGGCACTTCCAGGCGCCAAATCCGTTGGCCTGATGGAGAAAGAGAAGCAAGAGTTTCCCAGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
3UTR GCA 90 bp TTGCTTCTCTTTCTCCATCAGGCCAACGGATTTGGCGCCTGGAAGTaGCCTTGGGTGGGGCTGGAGTTCAGGAGCTCAGGACTTCAAACT +
Preference number: 1 (lower is better)
Translates to: LLLFLHQANGFGAWK*PWVGLEFRSSGLQT
Trigger: AGTTTGAAGTCCTGAGCTCCTGAACTCCAGCCCCACCCAAGGGCACTTCCAGGCGCCAAATCCGTTGGCCTGATGGAGAAAGAGAAGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
3UTR GCA 90 bp GTTGGACCCCTCTCAACACACCAGCAGTGTACTTGGCAGTTGCTTTaGACAAGTGGGAACTGGGAAACTCTTGCTTCTCTTTCTCCATCA +
Preference number: 1 (lower is better)
Translates to: VGPLSTHQQCTWQLL*TSGNWETLASLSPS
Trigger: TGATGGAGAAAGAGAAGCAAGAGTTTCCCAGTTCCCACTTGTGCAAAGCAACTGCCAAGTACACTGCTGGTGTGTTGAGAGGGGTCCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
3UTR CCA 90 bp GGTCTTAGAGTTGTTGGACCCCTCTCAACACACCAGCAGTGTACTTaGCAGTTGCTTTGCACAAGTGGGAACTGGGAAACTCTTGCTTCT +
Preference number: 1 (lower is better)
Translates to: GLRVVGPLSTHQQCT*QLLCTSGNWETLAS
Trigger: AGAAGCAAGAGTTTCCCAGTTCCCACTTGTGCAAAGCAACTGCCAAGTACACTGCTGGTGTGTTGAGAGGGGTCCAACAACTCTAAGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
3UTR CAA 90 bp GAACTGGGAAACTCTTGCTTCTCTTTCTCCATCAGGCCAACGGATTaGGCGCCTGGAAGTGCCCTTGGGTGGGGCTGGAGTTCAGGAGCT +
Preference number: 2 (lower is better)
Translates to: ELGNSCFSFSIRPTD*APGSALGWGWSSGA
Trigger: AGCTCCTGAACTCCAGCCCCACCCAAGGGCACTTCCAGGCGCCAAATCCGTTGGCCTGATGGAGAAAGAGAAGCAAGAGTTTCCCAGTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
3UTR-3UTR CCA 90 bp TTAGGAGGTGCGACCAGGCACCCAGTTCTTGCTGCTTTAAAGCAGGTCTTAGAGGGAAGTGCCCTTGGGTaGGGCTGGAGTTCAGGAGCT +
Preference number: 2 (lower is better)
Translates to: LGGATRHPVLAALKQVLEGSALG*GWSSGA
Trigger: AGCTCCTGAACTCCAGCCCCACCCAAGGGCACTTCC...CTCTAAGACCTGCTTTAAAGCAGCAAGAACTGGGTGCCTGGTCGCACCTCCTAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
3UTR-3UTR CCA 90 bp TCCTCACAACACTTTGAAAACTTCAAGAATTTAGGAGGTGCGACCAGGCACCCAGCCTGGAAGTGCCCTTaGGTGGGGCTGGAGTTCAGG +
Preference number: 2 (lower is better)
Translates to: SSQHFENFKNLGGATRHPAWKCP*VGLEFR
Trigger: CCTGAACTCCAGCCCCACCCAAGGGCACTTCCAGGC...TGGGTGCCTGGTCGCACCTCCTAAATTCTTGAAGTTTTCAAAGTGTTGTGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
3UTR CAA 90 bp TGTTGGACCCCTCTCAACACACCAGCAGTGTACTTGGCAGTTGCTTaGCACAAGTGGGAACTGGGAAACTCTTGCTTCTCTTTCTCCATC +
Preference number: 2 (lower is better)
Translates to: CWTPLNTPAVYLAVA*HKWELGNSCFSFSI
Trigger: GATGGAGAAAGAGAAGCAAGAGTTTCCCAGTTCCCACTTGTGCAAAGCAACTGCCAAGTACACTGCTGGTGTGTTGAGAGGGGTCCAACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
3UTR-3UTR GCA 90 bp TGCTGCTTTAAAGCAGGTCTTAGAGTTGTTGGACCCCTCTCAACACACCAGCAGGAACTGGGAAACTCTTaGTTCTCTTTCTCCATCAGG +
Preference number: 2 (lower is better)
Translates to: CCFKAGLRVVGPLSTHQQELGNS*FSFSIR
Trigger: CCTGATGGAGAAAGAGAAGCAAGAGTTTCCCAGTTC...CTGCTGGTGTGTTGAGAGGGGTCCAACAACTCTAAGACCTGCTTTAAAGCAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
3UTR-3UTR GCA 90 bp GGTAGTACTTCATGGGCTATCCAAGTCAGCAATTTACAAAACACACTTAAAAGGCAAGAATTTAGGAGGTaGGACCAGGCACCCAGTTCT +
Preference number: 2 (lower is better)
Translates to: GSTSWAIQVSNLQNTLKRQEFRR*DQAPSS
Trigger: AGAACTGGGTGCCTGGTCGCACCTCCTAAATTCTTG...CCTTTTAAGTGTGTTTTGTAAATTGCTGACTTGGATAGCCCATGAAGTACTACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
3UTR GCA 72 bp TTTCTCCATCAGGCCAACGGATTTGGCGCCTGGAAGTaGCCTTGGGTGGGGCTGGAGTTCAGGAGCTCAGGA +
Preference number: 3 (lower is better)
Translates to: FLHQANGFGAWK*PWVGLEFRSSG
Trigger: TCCTGAGCTCCTGAACTCCAGCCCCACCCAAGGGCACTTCCAGGCGCCAAATCCGTTGGCCTGATGGAGAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
3UTR CCA 72 bp CATCAGGCCAACGGATTTGGCGCCTGGAAGTGCCCTTaGGTGGGGCTGGAGTTCAGGAGCTCAGGACTTCAA +
Preference number: 3 (lower is better)
Translates to: HQANGFGAWKCP*VGLEFRSSGLQ
Trigger: TTGAAGTCCTGAGCTCCTGAACTCCAGCCCCACCCAAGGGCACTTCCAGGCGCCAAATCCGTTGGCCTGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
3UTR CCA 72 bp AGGCCAACGGATTTGGCGCCTGGAAGTGCCCTTGGGTaGGGCTGGAGTTCAGGAGCTCAGGACTTCAAACTT +
Preference number: 3 (lower is better)
Translates to: RPTDLAPGSALG*GWSSGAQDFKL
Trigger: AAGTTTGAAGTCCTGAGCTCCTGAACTCCAGCCCCACCCAAGGGCACTTCCAGGCGCCAAATCCGTTGGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
3UTR-3UTR CAA 90 bp CTTGCTGCTTTAAAGCAGGTCTTAGAGTTGTTGGACCCCTCTCAACACACCAGCCGCCTGGAAGTGCCCTaGGGTGGGGCTGGAGTTCAG +
Preference number: 3 (lower is better)
Translates to: LAALKQVLELLDPSQHTSRLEVP*GGAGVQ
Trigger: CTGAACTCCAGCCCCACCCAAGGGCACTTCCAGGCG...GCTGGTGTGTTGAGAGGGGTCCAACAACTCTAAGACCTGCTTTAAAGCAGCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
3UTR GCA 72 bp GCAGTTGCTTTGCACAAGTGGGAACTGGGAAACTCTTaGTTCTCTTTCTCCATCAGGCCAACGGATTTGGCG +
Preference number: 3 (lower is better)
Translates to: AVALHKWELGNS*FSFSIRPTDLA
Trigger: CGCCAAATCCGTTGGCCTGATGGAGAAAGAGAAGCAAGAGTTTCCCAGTTCCCACTTGTGCAAAGCAACTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
3UTR GCA 72 bp GACCCCTCTCAACACACCAGCAGTGTACTTGGCAGTTaGTTTGCACAAGTGGGAACTGGGAAACTCTTGCTT +
Preference number: 3 (lower is better)
Translates to: DPSQHTSSVLGS*FAQVGTGKLLL
Trigger: AAGCAAGAGTTTCCCAGTTCCCACTTGTGCAAAGCAACTGCCAAGTACACTGCTGGTGTGTTGAGAGGGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
3UTR GCA 72 bp GAATTTAGGAGGTGCGACCAGGCACCCAGTTCTTGCTaGTTTAAAGCAGGTCTTAGAGTTGTTGGACCCCTC +
Preference number: 3 (lower is better)
Translates to: EFRRCDQAPSSC*FKAGLRVVGPL
Trigger: GAGGGGTCCAACAACTCTAAGACCTGCTTTAAAGCAGCAAGAACTGGGTGCCTGGTCGCACCTCCTAAATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
3UTR GCA 72 bp CAAGAATTTAGGAGGTGCGACCAGGCACCCAGTTCTTaGTGCTTTAAAGCAGGTCTTAGAGTTGTTGGACCC +
Preference number: 3 (lower is better)
Translates to: QEFRRCDQAPSS*CFKAGLRVVGP
Trigger: GGGTCCAACAACTCTAAGACCTGCTTTAAAGCAGCAAGAACTGGGTGCCTGGTCGCACCTCCTAAATTCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
3UTR GCA 72 bp CTCTCAACACACCAGCAGTGTACTTGGCAGTTGCTTTaGACAAGTGGGAACTGGGAAACTCTTGCTTCTCTT +
Preference number: 3 (lower is better)
Translates to: LSTHQQCTWQLL*TSGNWETLASL
Trigger: AAGAGAAGCAAGAGTTTCCCAGTTCCCACTTGTGCAAAGCAACTGCCAAGTACACTGCTGGTGTGTTGAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
3UTR CCA 72 bp CAGTGTACTTGGCAGTTGCTTTGCACAAGTGGGAACTaGGAAACTCTTGCTTCTCTTTCTCCATCAGGCCAA +
Preference number: 3 (lower is better)
Translates to: QCTWQLLCTSGN*ETLASLSPSGQ
Trigger: TTGGCCTGATGGAGAAAGAGAAGCAAGAGTTTCCCAGTTCCCACTTGTGCAAAGCAACTGCCAAGTACACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
3UTR-3UTR CAA 90 bp AAAGGTAGTACTTCATGGGCTATCCAAGTCAGCAATTTACAAAACACACTTAAACAGTGTACTTGGCAGTaGCTTTGCACAAGTGGGAAC +
Preference number: 3 (lower is better)
Translates to: KGSTSWAIQVSNLQNTLKQCTWQ*LCTSGN
Trigger: GTTCCCACTTGTGCAAAGCAACTGCCAAGTACACTG...TTTAAGTGTGTTTTGTAAATTGCTGACTTGGATAGCCCATGAAGTACTACCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
3UTR-3UTR CAA 90 bp GGTAGTACTTCATGGGCTATCCAAGTCAGCAATTTACAAAACACACTTAAAAGGAAAAGAGCAGAGTTTTaGGACAGTAGAATGAACAGG +
Preference number: 3 (lower is better)
Translates to: GSTSWAIQVSNLQNTLKRKRAEF*DSRMNR
Trigger: CCTGTTCATTCTACTGTCCAAAAACTCTGCTCTTTT...CCTTTTAAGTGTGTTTTGTAAATTGCTGACTTGGATAGCCCATGAAGTACTACC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
3UTR TCA 72 bp TATAAGAGAAAAGAGCAGAGTTTTTGGACAGTAGAATaGACAGGCATCACCAATCAAATACACTATTCATCC +
Preference number: 3 (lower is better)
Translates to: YKRKEQSFWTVE*TGITNQIHYSS
Trigger: GGATGAATAGTGTATTTGATTGGTGATGCCTGTTCATTCTACTGTCCAAAAACTCTGCTCTTTTCTCTTATA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
CDS-3UTR CCA 90 bp TGGGGCTGGAGTTCAGGAGCTCAGGACTTCAAACTTCCGCGTGCTGAGAGGGGCGGCAGCCGCAGAGCCTaGCGGAAGAGGCTGCGGTTC +
Preference number: 4 (lower is better)
Translates to: WGWSSGAQDFKLPRAERGGSRRA*RKRLRF
Trigger: GAACCGCAGCCTCTTCCGCCAGGCTCTGCGGCTGCC...GCCCCTCTCAGCACGCGGAAGTTTGAAGTCCTGAGCTCCTGAACTCCAGCCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
CDS-3UTR CCA 90 bp GGTGGGGCTGGAGTTCAGGAGCTCAGGACTTCAAACTTCCGCGTGCTGAGAGGGGGGCGCACAGGCCGGTaGCAGTTTCTTGGAGCGGTG +
Preference number: 4 (lower is better)
Translates to: GGAGVQELRTSNFRVLRGGRTGR*QFLGAV
Trigger: CACCGCTCCAAGAAACTGCCACCGGCCTGTGCGCCC...CCCTCTCAGCACGCGGAAGTTTGAAGTCCTGAGCTCCTGAACTCCAGCCCCACC
63% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
CDS-3UTR GCA 90 bp GGTGGGGCTGGAGTTCAGGAGCTCAGGACTTCAAACTTCCGCGTGCTGAGAGGGTGCTCTAGGTGCAGCTaGAGGAGCGCTCGGCGGTAC +
Preference number: 4 (lower is better)
Translates to: GGAGVQELRTSNFRVLRGCSRCS*RSARRY
Trigger: GTACCGCCGAGCGCTCCTGCAGCTGCACCTAGAGCA...CCCTCTCAGCACGCGGAAGTTTGAAGTCCTGAGCTCCTGAACTCCAGCCCCACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
CDS-3UTR CCA 90 bp AAAGCAGGTCTTAGAGTTGTTGGACCCCTCTCAACACACCAGCAGTGTACTTGGGGGCCTCCAGGTGGCTaGCCGCCAGGTCGGCGAAGC +
Preference number: 4 (lower is better)
Translates to: KAGLRVVGPLSTHQQCTWGPPGG*PPGRRS
Trigger: GCTTCGCCGACCTGGCGGCCAGCCACCTGGAGGCCC...CCAAGTACACTGCTGGTGTGTTGAGAGGGGTCCAACAACTCTAAGACCTGCTTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
CDS-3UTR CCA 90 bp TTAGGAGGTGCGACCAGGCACCCAGTTCTTGCTGCTTTAAAGCAGGTCTTAGAGCTCTCGCCTTGCGGTTaGTGGCGGGCTCGTCCGGGG +
Preference number: 4 (lower is better)
Translates to: LGGATRHPVLAALKQVLELSPCG*WRARPG
Trigger: CCCCGGACGAGCCCGCCACCAACCGCAAGGCGAGAG...CTCTAAGACCTGCTTTAAAGCAGCAAGAACTGGGTGCCTGGTCGCACCTCCTAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
CDS-3UTR TCA 90 bp TCCTCACAACACTTTGAAAACTTCAAGAATTTAGGAGGTGCGACCAGGCACCCATGCGGTTCTCGCGCCTaGGCCGACGGTTCTCCAGCC +
Preference number: 4 (lower is better)
Translates to: SSQHFENFKNLGGATRHPCGSRA*ADGSPA
Trigger: GGCTGGAGAACCGTCGGCTCAGGCGCGAGAACCGCA...TGGGTGCCTGGTCGCACCTCCTAAATTCTTGAAGTTTTCAAAGTGTTGTGAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
CDS CCA 90 bp TCTGCCGGTCCCGCTCGTCCCGCGCGCGCAGGGCCTCCAGGTGGCTaGCCGCCAGGTCGGCGAAGCGCTCCTCCAGCTGTCGCCGGGCCC +
Preference number: 5 (lower is better)
Translates to: SAGPARPARAGPPGG*PPGRRSAPPAVAGP
Trigger: GGGCCCGGCGACAGCTGGAGGAGCGCTTCGCCGACCTGGCGGCCAGCCACCTGGAGGCCCTGCGCGCGCGGGACGAGCGGGACCGGCAGA
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
CDS GCA 90 bp CCCTGGGGCTGCCCGGCTCCTCCTCACGGCCATGGCCTCTCGCCTTaGGGTTGGTGGCGGGCTCGTCCGGGGCGAGGGTCTCGACGGCGG +
Preference number: 5 (lower is better)
Translates to: PWGCPAPPHGHGLSP*GWWRARPGRGSRRR
Trigger: CCGCCGTCGAGACCCTCGCCCCGGACGAGCCCGCCACCAACCGCAAGGCGAGAGGCCATGGCCGTGAGGAGGAGCCGGGCAGCCCCAGGG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
CDS CCA 90 bp GGCTGCCCGGCTCCTCCTCACGGCCATGGCCTCTCGCCTTGCGGTTaGTGGCGGGCTCGTCCGGGGCGAGGGTCTCGACGGCGGCCTCCC +
Preference number: 5 (lower is better)
Translates to: GCPAPPHGHGLSPCG*WRARPGRGSRRRPP
Trigger: GGGAGGCCGCCGTCGAGACCCTCGCCCCGGACGAGCCCGCCACCAACCGCAAGGCGAGAGGCCATGGCCGTGAGGAGGAGCCGGGCAGCC
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
CDS GCA 90 bp TTCTCCAGCCTCAGGCGGGCGTTCTCCTCGCGCAGCCGCGCGTTCTaGCGGTCCCGCTCGTCCCGCGCGCGCAGGGCCTCCAGGTGGCTG +
Preference number: 5 (lower is better)
Translates to: FSSLRRAFSSRSRAF*RSRSSRARRASRWL
Trigger: CAGCCACCTGGAGGCCCTGCGCGCGCGGGACGAGCGGGACCGGCAGAACGCGCGGCTGCGCGAGGAGAACGCCCGCCTGAGGCTGGAGAA
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
CDS GCA 90 bp TGGAGCGGTGGCTCCTCGATGGCTCCCGGCGGGCGCGCGCCCTGCTaGTCTAGGTGCAGCTGCAGGAGCGCTCGGCGGTACATGACCTCC +
Preference number: 5 (lower is better)
Translates to: WSGGSSMAPGGRAPC*SRCSCRSARRYMTS
Trigger: GGAGGTCATGTACCGCCGAGCGCTCCTGCAGCTGCACCTAGAGCAGCAGGGCGCGCGCCCGCCGGGAGCCATCGAGGAGCCACCGCTCCA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
CDS CCA 90 bp GGGCGCACAGGCCGGTGGCAGTTTCTTGGAGCGGTGGCTCCTCGATaGCTCCCGGCGGGCGCGCGCCCTGCTGCTCTAGGTGCAGCTGCA +
Preference number: 5 (lower is better)
Translates to: GRTGRWQFLGAVAPR*LPAGARPAALGAAA
Trigger: TGCAGCTGCACCTAGAGCAGCAGGGCGCGCGCCCGCCGGGAGCCATCGAGGAGCCACCGCTCCAAGAAACTGCCACCGGCCTGTGCGCCC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
CDS GCA 90 bp TCTTGGAGCGGTGGCTCCTCGATGGCTCCCGGCGGGCGCGCGCCCTaGTGCTCTAGGTGCAGCTGCAGGAGCGCTCGGCGGTACATGACC +
Preference number: 5 (lower is better)
Translates to: SWSGGSSMAPGGRAP*CSRCSCRSARRYMT
Trigger: GGTCATGTACCGCCGAGCGCTCCTGCAGCTGCACCTAGAGCAGCAGGGCGCGCGCCCGCCGGGAGCCATCGAGGAGCCACCGCTCCAAGA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
CDS GCA 90 bp TCGATGGCTCCCGGCGGGCGCGCGCCCTGCTGCTCTAGGTGCAGCTaGAGGAGCGCTCGGCGGTACATGACCTCCAGCTTCTCTAGCCGG +
Preference number: 5 (lower is better)
Translates to: SMAPGGRAPCCSRCS*RSARRYMTSSFSSR
Trigger: CCGGCTAGAGAAGCTGGAGGTCATGTACCGCCGAGCGCTCCTGCAGCTGCACCTAGAGCAGCAGGGCGCGCGCCCGCCGGGAGCCATCGA
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
CDS GCA 90 bp GGCTCCTCGATGGCTCCCGGCGGGCGCGCGCCCTGCTGCTCTAGGTaGAGCTGCAGGAGCGCTCGGCGGTACATGACCTCCAGCTTCTCT +
Preference number: 5 (lower is better)
Translates to: GSSMAPGGRAPCCSR*SCRSARRYMTSSFS
Trigger: AGAGAAGCTGGAGGTCATGTACCGCCGAGCGCTCCTGCAGCTGCACCTAGAGCAGCAGGGCGCGCGCCCGCCGGGAGCCATCGAGGAGCC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
CDS CCA 90 bp ACAGCCAGGGCCTCGGAACGTCCGGATCATGGGCGCACAGGCCGGTaGCAGTTTCTTGGAGCGGTGGCTCCTCGATGGCTCCCGGCGGGC +
Preference number: 5 (lower is better)
Translates to: TARASERPDHGRTGR*QFLGAVAPRWLPAG
Trigger: GCCCGCCGGGAGCCATCGAGGAGCCACCGCTCCAAGAAACTGCCACCGGCCTGTGCGCCCATGATCCGGACGTTCCGAGGCCCTGGCTGT
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
CDS-3UTR CAA 90 bp TGGTCCTCACAACACTTTGAAAACTTCAAGAATTTAGGAGGTGCGACCAGGCACGCCGGTGGCAGTTTCTaGGAGCGGTGGCTCCTCGAT +
Preference number: 5 (lower is better)
Translates to: WSSQHFENFKNLGGATRHAGGSF*ERWLLD
Trigger: ATCGAGGAGCCACCGCTCCAAGAAACTGCCACCGGC...GTGCCTGGTCGCACCTCCTAAATTCTTGAAGTTTTCAAAGTGTTGTGAGGACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
CDS GCA 72 bp CTCAGGCGGGCGTTCTCCTCGCGCAGCCGCGCGTTCTaGCGGTCCCGCTCGTCCCGCGCGCGCAGGGCCTCC +
Preference number: 6 (lower is better)
Translates to: LRRAFSSRSRAF*RSRSSRARRAS
Trigger: GGAGGCCCTGCGCGCGCGGGACGAGCGGGACCGGCAGAACGCGCGGCTGCGCGAGGAGAACGCCCGCCTGAG
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
CDS CAA 90 bp GGGCTGCCCGGCTCCTCCTCACGGCCATGGCCTCTCGCCTTGCGGTaGGTGGCGGGCTCGTCCGGGGCGAGGGTCTCGACGGCGGCCTCC +
Preference number: 6 (lower is better)
Translates to: GLPGSSSRPWPLALR*VAGSSGARVSTAAS
Trigger: GGAGGCCGCCGTCGAGACCCTCGCCCCGGACGAGCCCGCCACCAACCGCAAGGCGAGAGGCCATGGCCGTGAGGAGGAGCCGGGCAGCCC
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
CDS CAA 90 bp GCCCTGGGGCTGCCCGGCTCCTCCTCACGGCCATGGCCTCTCGCCTaGCGGTTGGTGGCGGGCTCGTCCGGGGCGAGGGTCTCGACGGCG +
Preference number: 6 (lower is better)
Translates to: ALGLPGSSSRPWPLA*RLVAGSSGARVSTA
Trigger: CGCCGTCGAGACCCTCGCCCCGGACGAGCCCGCCACCAACCGCAAGGCGAGAGGCCATGGCCGTGAGGAGGAGCCGGGCAGCCCCAGGGC
77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
CDS GCA 72 bp GGTGGCTCCTCGATGGCTCCCGGCGGGCGCGCGCCCTaGTGCTCTAGGTGCAGCTGCAGGAGCGCTCGGCGG +
Preference number: 6 (lower is better)
Translates to: GGSSMAPGGRAP*CSRCSCRSARR
Trigger: CCGCCGAGCGCTCCTGCAGCTGCACCTAGAGCAGCAGGGCGCGCGCCCGCCGGGAGCCATCGAGGAGCCACC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
CDS CAA 72 bp CTGCCCGGCTCCTCCTCACGGCCATGGCCTCTCGCCTaGCGGTTGGTGGCGGGCTCGTCCGGGGCGAGGGTC +
Preference number: 6 (lower is better)
Translates to: LPGSSSRPWPLA*RLVAGSSGARV
Trigger: GACCCTCGCCCCGGACGAGCCCGCCACCAACCGCAAGGCGAGAGGCCATGGCCGTGAGGAGGAGCCGGGCAG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
CDS GCA 72 bp TGCCCGGCTCCTCCTCACGGCCATGGCCTCTCGCCTTaGGGTTGGTGGCGGGCTCGTCCGGGGCGAGGGTCT +
Preference number: 6 (lower is better)
Translates to: CPAPPHGHGLSP*GWWRARPGRGS
Trigger: AGACCCTCGCCCCGGACGAGCCCGCCACCAACCGCAAGGCGAGAGGCCATGGCCGTGAGGAGGAGCCGGGCA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
CDS CCA 72 bp GCTCCTCCTCACGGCCATGGCCTCTCGCCTTGCGGTTaGTGGCGGGCTCGTCCGGGGCGAGGGTCTCGACGG +
Preference number: 6 (lower is better)
Translates to: APPHGHGLSPCG*WRARPGRGSRR
Trigger: CCGTCGAGACCCTCGCCCCGGACGAGCCCGCCACCAACCGCAAGGCGAGAGGCCATGGCCGTGAGGAGGAGC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
CDS CAA 90 bp CCTCGGAACGTCCGGATCATGGGCGCACAGGCCGGTGGCAGTTTCTaGGAGCGGTGGCTCCTCGATGGCTCCCGGCGGGCGCGCGCCCTG +
Preference number: 6 (lower is better)
Translates to: PRNVRIMGAQAGGSF*ERWLLDGSRRARAL
Trigger: CAGGGCGCGCGCCCGCCGGGAGCCATCGAGGAGCCACCGCTCCAAGAAACTGCCACCGGCCTGTGCGCCCATGATCCGGACGTTCCGAGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
CDS GCA 72 bp CCCGGCGGGCGCGCGCCCTGCTGCTCTAGGTGCAGCTaGAGGAGCGCTCGGCGGTACATGACCTCCAGCTTC +
Preference number: 6 (lower is better)
Translates to: PGGRAPCCSRCS*RSARRYMTSSF
Trigger: GAAGCTGGAGGTCATGTACCGCCGAGCGCTCCTGCAGCTGCACCTAGAGCAGCAGGGCGCGCGCCCGCCGGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
CDS CAA 72 bp GTCCGGATCATGGGCGCACAGGCCGGTGGCAGTTTCTaGGAGCGGTGGCTCCTCGATGGCTCCCGGCGGGCG +
Preference number: 6 (lower is better)
Translates to: VRIMGAQAGGSF*ERWLLDGSRRA
Trigger: CGCCCGCCGGGAGCCATCGAGGAGCCACCGCTCCAAGAAACTGCCACCGGCCTGTGCGCCCATGATCCGGAC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6
CDS CCA 72 bp GCCTCGGAACGTCCGGATCATGGGCGCACAGGCCGGTaGCAGTTTCTTGGAGCGGTGGCTCCTCGATGGCTC +
Preference number: 6 (lower is better)
Translates to: ASERPDHGRTGR*QFLGAVAPRWL
Trigger: GAGCCATCGAGGAGCCACCGCTCCAAGAAACTGCCACCGGCCTGTGCGCCCATGATCCGGACGTTCCGAGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066774.6