Pregenerated sensors for TUSC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054000Ensembl transcript IDs: ENSMUST00000066774.6
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTCTCCATCAGGCCAACGGATTTGGCGCCTGGAAGTGCCCTTGGGTaGGGCTGGAGTTCAGGAGCTCAGGACTTCAAACTTCCGCGTGCT | + |
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Preference number: 1 (lower is better) Translates to: FSIRPTDLAPGSALG*GWSSGAQDFKLPRA Trigger: AGCACGCGGAAGTTTGAAGTCCTGAGCTCCTGAACTCCAGCCCCACCCAAGGGCACTTCCAGGCGCCAAATCCGTTGGCCTGATGGAGAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| 3UTR CCA 90 bp | AACTGGGAAACTCTTGCTTCTCTTTCTCCATCAGGCCAACGGATTTaGCGCCTGGAAGTGCCCTTGGGTGGGGCTGGAGTTCAGGAGCTC | + |
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Preference number: 1 (lower is better) Translates to: NWETLASLSPSGQRI*RLEVPLGGAGVQEL Trigger: GAGCTCCTGAACTCCAGCCCCACCCAAGGGCACTTCCAGGCGCCAAATCCGTTGGCCTGATGGAGAAAGAGAAGCAAGAGTTTCCCAGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| 3UTR GCA 90 bp | TTGCTTCTCTTTCTCCATCAGGCCAACGGATTTGGCGCCTGGAAGTaGCCTTGGGTGGGGCTGGAGTTCAGGAGCTCAGGACTTCAAACT | + |
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Preference number: 1 (lower is better) Translates to: LLLFLHQANGFGAWK*PWVGLEFRSSGLQT Trigger: AGTTTGAAGTCCTGAGCTCCTGAACTCCAGCCCCACCCAAGGGCACTTCCAGGCGCCAAATCCGTTGGCCTGATGGAGAAAGAGAAGCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| 3UTR GCA 90 bp | GTTGGACCCCTCTCAACACACCAGCAGTGTACTTGGCAGTTGCTTTaGACAAGTGGGAACTGGGAAACTCTTGCTTCTCTTTCTCCATCA | + |
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Preference number: 1 (lower is better) Translates to: VGPLSTHQQCTWQLL*TSGNWETLASLSPS Trigger: TGATGGAGAAAGAGAAGCAAGAGTTTCCCAGTTCCCACTTGTGCAAAGCAACTGCCAAGTACACTGCTGGTGTGTTGAGAGGGGTCCAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| 3UTR CCA 90 bp | GGTCTTAGAGTTGTTGGACCCCTCTCAACACACCAGCAGTGTACTTaGCAGTTGCTTTGCACAAGTGGGAACTGGGAAACTCTTGCTTCT | + |
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Preference number: 1 (lower is better) Translates to: GLRVVGPLSTHQQCT*QLLCTSGNWETLAS Trigger: AGAAGCAAGAGTTTCCCAGTTCCCACTTGTGCAAAGCAACTGCCAAGTACACTGCTGGTGTGTTGAGAGGGGTCCAACAACTCTAAGACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| 3UTR CAA 90 bp | GAACTGGGAAACTCTTGCTTCTCTTTCTCCATCAGGCCAACGGATTaGGCGCCTGGAAGTGCCCTTGGGTGGGGCTGGAGTTCAGGAGCT | + |
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Preference number: 2 (lower is better) Translates to: ELGNSCFSFSIRPTD*APGSALGWGWSSGA Trigger: AGCTCCTGAACTCCAGCCCCACCCAAGGGCACTTCCAGGCGCCAAATCCGTTGGCCTGATGGAGAAAGAGAAGCAAGAGTTTCCCAGTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| 3UTR-3UTR CCA 90 bp | TTAGGAGGTGCGACCAGGCACCCAGTTCTTGCTGCTTTAAAGCAGGTCTTAGAGGGAAGTGCCCTTGGGTaGGGCTGGAGTTCAGGAGCT | + |
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Preference number: 2 (lower is better) Translates to: LGGATRHPVLAALKQVLEGSALG*GWSSGA Trigger: AGCTCCTGAACTCCAGCCCCACCCAAGGGCACTTCC...CTCTAAGACCTGCTTTAAAGCAGCAAGAACTGGGTGCCTGGTCGCACCTCCTAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| 3UTR-3UTR CCA 90 bp | TCCTCACAACACTTTGAAAACTTCAAGAATTTAGGAGGTGCGACCAGGCACCCAGCCTGGAAGTGCCCTTaGGTGGGGCTGGAGTTCAGG | + |
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Preference number: 2 (lower is better) Translates to: SSQHFENFKNLGGATRHPAWKCP*VGLEFR Trigger: CCTGAACTCCAGCCCCACCCAAGGGCACTTCCAGGC...TGGGTGCCTGGTCGCACCTCCTAAATTCTTGAAGTTTTCAAAGTGTTGTGAGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| 3UTR CAA 90 bp | TGTTGGACCCCTCTCAACACACCAGCAGTGTACTTGGCAGTTGCTTaGCACAAGTGGGAACTGGGAAACTCTTGCTTCTCTTTCTCCATC | + |
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Preference number: 2 (lower is better) Translates to: CWTPLNTPAVYLAVA*HKWELGNSCFSFSI Trigger: GATGGAGAAAGAGAAGCAAGAGTTTCCCAGTTCCCACTTGTGCAAAGCAACTGCCAAGTACACTGCTGGTGTGTTGAGAGGGGTCCAACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| 3UTR-3UTR GCA 90 bp | TGCTGCTTTAAAGCAGGTCTTAGAGTTGTTGGACCCCTCTCAACACACCAGCAGGAACTGGGAAACTCTTaGTTCTCTTTCTCCATCAGG | + |
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Preference number: 2 (lower is better) Translates to: CCFKAGLRVVGPLSTHQQELGNS*FSFSIR Trigger: CCTGATGGAGAAAGAGAAGCAAGAGTTTCCCAGTTC...CTGCTGGTGTGTTGAGAGGGGTCCAACAACTCTAAGACCTGCTTTAAAGCAGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| 3UTR-3UTR GCA 90 bp | GGTAGTACTTCATGGGCTATCCAAGTCAGCAATTTACAAAACACACTTAAAAGGCAAGAATTTAGGAGGTaGGACCAGGCACCCAGTTCT | + |
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Preference number: 2 (lower is better) Translates to: GSTSWAIQVSNLQNTLKRQEFRR*DQAPSS Trigger: AGAACTGGGTGCCTGGTCGCACCTCCTAAATTCTTG...CCTTTTAAGTGTGTTTTGTAAATTGCTGACTTGGATAGCCCATGAAGTACTACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| 3UTR GCA 72 bp | TTTCTCCATCAGGCCAACGGATTTGGCGCCTGGAAGTaGCCTTGGGTGGGGCTGGAGTTCAGGAGCTCAGGA | + |
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Preference number: 3 (lower is better) Translates to: FLHQANGFGAWK*PWVGLEFRSSG Trigger: TCCTGAGCTCCTGAACTCCAGCCCCACCCAAGGGCACTTCCAGGCGCCAAATCCGTTGGCCTGATGGAGAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| 3UTR CCA 72 bp | CATCAGGCCAACGGATTTGGCGCCTGGAAGTGCCCTTaGGTGGGGCTGGAGTTCAGGAGCTCAGGACTTCAA | + |
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Preference number: 3 (lower is better) Translates to: HQANGFGAWKCP*VGLEFRSSGLQ Trigger: TTGAAGTCCTGAGCTCCTGAACTCCAGCCCCACCCAAGGGCACTTCCAGGCGCCAAATCCGTTGGCCTGATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| 3UTR CCA 72 bp | AGGCCAACGGATTTGGCGCCTGGAAGTGCCCTTGGGTaGGGCTGGAGTTCAGGAGCTCAGGACTTCAAACTT | + |
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Preference number: 3 (lower is better) Translates to: RPTDLAPGSALG*GWSSGAQDFKL Trigger: AAGTTTGAAGTCCTGAGCTCCTGAACTCCAGCCCCACCCAAGGGCACTTCCAGGCGCCAAATCCGTTGGCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| 3UTR-3UTR CAA 90 bp | CTTGCTGCTTTAAAGCAGGTCTTAGAGTTGTTGGACCCCTCTCAACACACCAGCCGCCTGGAAGTGCCCTaGGGTGGGGCTGGAGTTCAG | + |
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Preference number: 3 (lower is better) Translates to: LAALKQVLELLDPSQHTSRLEVP*GGAGVQ Trigger: CTGAACTCCAGCCCCACCCAAGGGCACTTCCAGGCG...GCTGGTGTGTTGAGAGGGGTCCAACAACTCTAAGACCTGCTTTAAAGCAGCAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| 3UTR GCA 72 bp | GCAGTTGCTTTGCACAAGTGGGAACTGGGAAACTCTTaGTTCTCTTTCTCCATCAGGCCAACGGATTTGGCG | + |
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Preference number: 3 (lower is better) Translates to: AVALHKWELGNS*FSFSIRPTDLA Trigger: CGCCAAATCCGTTGGCCTGATGGAGAAAGAGAAGCAAGAGTTTCCCAGTTCCCACTTGTGCAAAGCAACTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| 3UTR GCA 72 bp | GACCCCTCTCAACACACCAGCAGTGTACTTGGCAGTTaGTTTGCACAAGTGGGAACTGGGAAACTCTTGCTT | + |
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Preference number: 3 (lower is better) Translates to: DPSQHTSSVLGS*FAQVGTGKLLL Trigger: AAGCAAGAGTTTCCCAGTTCCCACTTGTGCAAAGCAACTGCCAAGTACACTGCTGGTGTGTTGAGAGGGGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| 3UTR GCA 72 bp | GAATTTAGGAGGTGCGACCAGGCACCCAGTTCTTGCTaGTTTAAAGCAGGTCTTAGAGTTGTTGGACCCCTC | + |
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Preference number: 3 (lower is better) Translates to: EFRRCDQAPSSC*FKAGLRVVGPL Trigger: GAGGGGTCCAACAACTCTAAGACCTGCTTTAAAGCAGCAAGAACTGGGTGCCTGGTCGCACCTCCTAAATTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| 3UTR GCA 72 bp | CAAGAATTTAGGAGGTGCGACCAGGCACCCAGTTCTTaGTGCTTTAAAGCAGGTCTTAGAGTTGTTGGACCC | + |
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Preference number: 3 (lower is better) Translates to: QEFRRCDQAPSS*CFKAGLRVVGP Trigger: GGGTCCAACAACTCTAAGACCTGCTTTAAAGCAGCAAGAACTGGGTGCCTGGTCGCACCTCCTAAATTCTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| 3UTR GCA 72 bp | CTCTCAACACACCAGCAGTGTACTTGGCAGTTGCTTTaGACAAGTGGGAACTGGGAAACTCTTGCTTCTCTT | + |
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Preference number: 3 (lower is better) Translates to: LSTHQQCTWQLL*TSGNWETLASL Trigger: AAGAGAAGCAAGAGTTTCCCAGTTCCCACTTGTGCAAAGCAACTGCCAAGTACACTGCTGGTGTGTTGAGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| 3UTR CCA 72 bp | CAGTGTACTTGGCAGTTGCTTTGCACAAGTGGGAACTaGGAAACTCTTGCTTCTCTTTCTCCATCAGGCCAA | + |
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Preference number: 3 (lower is better) Translates to: QCTWQLLCTSGN*ETLASLSPSGQ Trigger: TTGGCCTGATGGAGAAAGAGAAGCAAGAGTTTCCCAGTTCCCACTTGTGCAAAGCAACTGCCAAGTACACTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| 3UTR-3UTR CAA 90 bp | AAAGGTAGTACTTCATGGGCTATCCAAGTCAGCAATTTACAAAACACACTTAAACAGTGTACTTGGCAGTaGCTTTGCACAAGTGGGAAC | + |
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Preference number: 3 (lower is better) Translates to: KGSTSWAIQVSNLQNTLKQCTWQ*LCTSGN Trigger: GTTCCCACTTGTGCAAAGCAACTGCCAAGTACACTG...TTTAAGTGTGTTTTGTAAATTGCTGACTTGGATAGCCCATGAAGTACTACCTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| 3UTR-3UTR CAA 90 bp | GGTAGTACTTCATGGGCTATCCAAGTCAGCAATTTACAAAACACACTTAAAAGGAAAAGAGCAGAGTTTTaGGACAGTAGAATGAACAGG | + |
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Preference number: 3 (lower is better) Translates to: GSTSWAIQVSNLQNTLKRKRAEF*DSRMNR Trigger: CCTGTTCATTCTACTGTCCAAAAACTCTGCTCTTTT...CCTTTTAAGTGTGTTTTGTAAATTGCTGACTTGGATAGCCCATGAAGTACTACC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| 3UTR TCA 72 bp | TATAAGAGAAAAGAGCAGAGTTTTTGGACAGTAGAATaGACAGGCATCACCAATCAAATACACTATTCATCC | + |
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Preference number: 3 (lower is better) Translates to: YKRKEQSFWTVE*TGITNQIHYSS Trigger: GGATGAATAGTGTATTTGATTGGTGATGCCTGTTCATTCTACTGTCCAAAAACTCTGCTCTTTTCTCTTATA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| CDS-3UTR CCA 90 bp | TGGGGCTGGAGTTCAGGAGCTCAGGACTTCAAACTTCCGCGTGCTGAGAGGGGCGGCAGCCGCAGAGCCTaGCGGAAGAGGCTGCGGTTC | + |
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Preference number: 4 (lower is better) Translates to: WGWSSGAQDFKLPRAERGGSRRA*RKRLRF Trigger: GAACCGCAGCCTCTTCCGCCAGGCTCTGCGGCTGCC...GCCCCTCTCAGCACGCGGAAGTTTGAAGTCCTGAGCTCCTGAACTCCAGCCCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| CDS-3UTR CCA 90 bp | GGTGGGGCTGGAGTTCAGGAGCTCAGGACTTCAAACTTCCGCGTGCTGAGAGGGGGGCGCACAGGCCGGTaGCAGTTTCTTGGAGCGGTG | + |
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Preference number: 4 (lower is better) Translates to: GGAGVQELRTSNFRVLRGGRTGR*QFLGAV Trigger: CACCGCTCCAAGAAACTGCCACCGGCCTGTGCGCCC...CCCTCTCAGCACGCGGAAGTTTGAAGTCCTGAGCTCCTGAACTCCAGCCCCACC 63% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| CDS-3UTR GCA 90 bp | GGTGGGGCTGGAGTTCAGGAGCTCAGGACTTCAAACTTCCGCGTGCTGAGAGGGTGCTCTAGGTGCAGCTaGAGGAGCGCTCGGCGGTAC | + |
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Preference number: 4 (lower is better) Translates to: GGAGVQELRTSNFRVLRGCSRCS*RSARRY Trigger: GTACCGCCGAGCGCTCCTGCAGCTGCACCTAGAGCA...CCCTCTCAGCACGCGGAAGTTTGAAGTCCTGAGCTCCTGAACTCCAGCCCCACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| CDS-3UTR CCA 90 bp | AAAGCAGGTCTTAGAGTTGTTGGACCCCTCTCAACACACCAGCAGTGTACTTGGGGGCCTCCAGGTGGCTaGCCGCCAGGTCGGCGAAGC | + |
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Preference number: 4 (lower is better) Translates to: KAGLRVVGPLSTHQQCTWGPPGG*PPGRRS Trigger: GCTTCGCCGACCTGGCGGCCAGCCACCTGGAGGCCC...CCAAGTACACTGCTGGTGTGTTGAGAGGGGTCCAACAACTCTAAGACCTGCTTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| CDS-3UTR CCA 90 bp | TTAGGAGGTGCGACCAGGCACCCAGTTCTTGCTGCTTTAAAGCAGGTCTTAGAGCTCTCGCCTTGCGGTTaGTGGCGGGCTCGTCCGGGG | + |
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Preference number: 4 (lower is better) Translates to: LGGATRHPVLAALKQVLELSPCG*WRARPG Trigger: CCCCGGACGAGCCCGCCACCAACCGCAAGGCGAGAG...CTCTAAGACCTGCTTTAAAGCAGCAAGAACTGGGTGCCTGGTCGCACCTCCTAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| CDS-3UTR TCA 90 bp | TCCTCACAACACTTTGAAAACTTCAAGAATTTAGGAGGTGCGACCAGGCACCCATGCGGTTCTCGCGCCTaGGCCGACGGTTCTCCAGCC | + |
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Preference number: 4 (lower is better) Translates to: SSQHFENFKNLGGATRHPCGSRA*ADGSPA Trigger: GGCTGGAGAACCGTCGGCTCAGGCGCGAGAACCGCA...TGGGTGCCTGGTCGCACCTCCTAAATTCTTGAAGTTTTCAAAGTGTTGTGAGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| CDS CCA 90 bp | TCTGCCGGTCCCGCTCGTCCCGCGCGCGCAGGGCCTCCAGGTGGCTaGCCGCCAGGTCGGCGAAGCGCTCCTCCAGCTGTCGCCGGGCCC | + |
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Preference number: 5 (lower is better) Translates to: SAGPARPARAGPPGG*PPGRRSAPPAVAGP Trigger: GGGCCCGGCGACAGCTGGAGGAGCGCTTCGCCGACCTGGCGGCCAGCCACCTGGAGGCCCTGCGCGCGCGGGACGAGCGGGACCGGCAGA 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| CDS GCA 90 bp | CCCTGGGGCTGCCCGGCTCCTCCTCACGGCCATGGCCTCTCGCCTTaGGGTTGGTGGCGGGCTCGTCCGGGGCGAGGGTCTCGACGGCGG | + |
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Preference number: 5 (lower is better) Translates to: PWGCPAPPHGHGLSP*GWWRARPGRGSRRR Trigger: CCGCCGTCGAGACCCTCGCCCCGGACGAGCCCGCCACCAACCGCAAGGCGAGAGGCCATGGCCGTGAGGAGGAGCCGGGCAGCCCCAGGG 77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| CDS CCA 90 bp | GGCTGCCCGGCTCCTCCTCACGGCCATGGCCTCTCGCCTTGCGGTTaGTGGCGGGCTCGTCCGGGGCGAGGGTCTCGACGGCGGCCTCCC | + |
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Preference number: 5 (lower is better) Translates to: GCPAPPHGHGLSPCG*WRARPGRGSRRRPP Trigger: GGGAGGCCGCCGTCGAGACCCTCGCCCCGGACGAGCCCGCCACCAACCGCAAGGCGAGAGGCCATGGCCGTGAGGAGGAGCCGGGCAGCC 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| CDS GCA 90 bp | TTCTCCAGCCTCAGGCGGGCGTTCTCCTCGCGCAGCCGCGCGTTCTaGCGGTCCCGCTCGTCCCGCGCGCGCAGGGCCTCCAGGTGGCTG | + |
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Preference number: 5 (lower is better) Translates to: FSSLRRAFSSRSRAF*RSRSSRARRASRWL Trigger: CAGCCACCTGGAGGCCCTGCGCGCGCGGGACGAGCGGGACCGGCAGAACGCGCGGCTGCGCGAGGAGAACGCCCGCCTGAGGCTGGAGAA 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| CDS GCA 90 bp | TGGAGCGGTGGCTCCTCGATGGCTCCCGGCGGGCGCGCGCCCTGCTaGTCTAGGTGCAGCTGCAGGAGCGCTCGGCGGTACATGACCTCC | + |
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Preference number: 5 (lower is better) Translates to: WSGGSSMAPGGRAPC*SRCSCRSARRYMTS Trigger: GGAGGTCATGTACCGCCGAGCGCTCCTGCAGCTGCACCTAGAGCAGCAGGGCGCGCGCCCGCCGGGAGCCATCGAGGAGCCACCGCTCCA 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| CDS CCA 90 bp | GGGCGCACAGGCCGGTGGCAGTTTCTTGGAGCGGTGGCTCCTCGATaGCTCCCGGCGGGCGCGCGCCCTGCTGCTCTAGGTGCAGCTGCA | + |
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Preference number: 5 (lower is better) Translates to: GRTGRWQFLGAVAPR*LPAGARPAALGAAA Trigger: TGCAGCTGCACCTAGAGCAGCAGGGCGCGCGCCCGCCGGGAGCCATCGAGGAGCCACCGCTCCAAGAAACTGCCACCGGCCTGTGCGCCC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| CDS GCA 90 bp | TCTTGGAGCGGTGGCTCCTCGATGGCTCCCGGCGGGCGCGCGCCCTaGTGCTCTAGGTGCAGCTGCAGGAGCGCTCGGCGGTACATGACC | + |
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Preference number: 5 (lower is better) Translates to: SWSGGSSMAPGGRAP*CSRCSCRSARRYMT Trigger: GGTCATGTACCGCCGAGCGCTCCTGCAGCTGCACCTAGAGCAGCAGGGCGCGCGCCCGCCGGGAGCCATCGAGGAGCCACCGCTCCAAGA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| CDS GCA 90 bp | TCGATGGCTCCCGGCGGGCGCGCGCCCTGCTGCTCTAGGTGCAGCTaGAGGAGCGCTCGGCGGTACATGACCTCCAGCTTCTCTAGCCGG | + |
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Preference number: 5 (lower is better) Translates to: SMAPGGRAPCCSRCS*RSARRYMTSSFSSR Trigger: CCGGCTAGAGAAGCTGGAGGTCATGTACCGCCGAGCGCTCCTGCAGCTGCACCTAGAGCAGCAGGGCGCGCGCCCGCCGGGAGCCATCGA 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| CDS GCA 90 bp | GGCTCCTCGATGGCTCCCGGCGGGCGCGCGCCCTGCTGCTCTAGGTaGAGCTGCAGGAGCGCTCGGCGGTACATGACCTCCAGCTTCTCT | + |
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Preference number: 5 (lower is better) Translates to: GSSMAPGGRAPCCSR*SCRSARRYMTSSFS Trigger: AGAGAAGCTGGAGGTCATGTACCGCCGAGCGCTCCTGCAGCTGCACCTAGAGCAGCAGGGCGCGCGCCCGCCGGGAGCCATCGAGGAGCC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| CDS CCA 90 bp | ACAGCCAGGGCCTCGGAACGTCCGGATCATGGGCGCACAGGCCGGTaGCAGTTTCTTGGAGCGGTGGCTCCTCGATGGCTCCCGGCGGGC | + |
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Preference number: 5 (lower is better) Translates to: TARASERPDHGRTGR*QFLGAVAPRWLPAG Trigger: GCCCGCCGGGAGCCATCGAGGAGCCACCGCTCCAAGAAACTGCCACCGGCCTGTGCGCCCATGATCCGGACGTTCCGAGGCCCTGGCTGT 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| CDS-3UTR CAA 90 bp | TGGTCCTCACAACACTTTGAAAACTTCAAGAATTTAGGAGGTGCGACCAGGCACGCCGGTGGCAGTTTCTaGGAGCGGTGGCTCCTCGAT | + |
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Preference number: 5 (lower is better) Translates to: WSSQHFENFKNLGGATRHAGGSF*ERWLLD Trigger: ATCGAGGAGCCACCGCTCCAAGAAACTGCCACCGGC...GTGCCTGGTCGCACCTCCTAAATTCTTGAAGTTTTCAAAGTGTTGTGAGGACCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| CDS GCA 72 bp | CTCAGGCGGGCGTTCTCCTCGCGCAGCCGCGCGTTCTaGCGGTCCCGCTCGTCCCGCGCGCGCAGGGCCTCC | + |
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Preference number: 6 (lower is better) Translates to: LRRAFSSRSRAF*RSRSSRARRAS Trigger: GGAGGCCCTGCGCGCGCGGGACGAGCGGGACCGGCAGAACGCGCGGCTGCGCGAGGAGAACGCCCGCCTGAG 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| CDS CAA 90 bp | GGGCTGCCCGGCTCCTCCTCACGGCCATGGCCTCTCGCCTTGCGGTaGGTGGCGGGCTCGTCCGGGGCGAGGGTCTCGACGGCGGCCTCC | + |
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Preference number: 6 (lower is better) Translates to: GLPGSSSRPWPLALR*VAGSSGARVSTAAS Trigger: GGAGGCCGCCGTCGAGACCCTCGCCCCGGACGAGCCCGCCACCAACCGCAAGGCGAGAGGCCATGGCCGTGAGGAGGAGCCGGGCAGCCC 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| CDS CAA 90 bp | GCCCTGGGGCTGCCCGGCTCCTCCTCACGGCCATGGCCTCTCGCCTaGCGGTTGGTGGCGGGCTCGTCCGGGGCGAGGGTCTCGACGGCG | + |
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Preference number: 6 (lower is better) Translates to: ALGLPGSSSRPWPLA*RLVAGSSGARVSTA Trigger: CGCCGTCGAGACCCTCGCCCCGGACGAGCCCGCCACCAACCGCAAGGCGAGAGGCCATGGCCGTGAGGAGGAGCCGGGCAGCCCCAGGGC 77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| CDS GCA 72 bp | GGTGGCTCCTCGATGGCTCCCGGCGGGCGCGCGCCCTaGTGCTCTAGGTGCAGCTGCAGGAGCGCTCGGCGG | + |
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Preference number: 6 (lower is better) Translates to: GGSSMAPGGRAP*CSRCSCRSARR Trigger: CCGCCGAGCGCTCCTGCAGCTGCACCTAGAGCAGCAGGGCGCGCGCCCGCCGGGAGCCATCGAGGAGCCACC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| CDS CAA 72 bp | CTGCCCGGCTCCTCCTCACGGCCATGGCCTCTCGCCTaGCGGTTGGTGGCGGGCTCGTCCGGGGCGAGGGTC | + |
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Preference number: 6 (lower is better) Translates to: LPGSSSRPWPLA*RLVAGSSGARV Trigger: GACCCTCGCCCCGGACGAGCCCGCCACCAACCGCAAGGCGAGAGGCCATGGCCGTGAGGAGGAGCCGGGCAG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| CDS GCA 72 bp | TGCCCGGCTCCTCCTCACGGCCATGGCCTCTCGCCTTaGGGTTGGTGGCGGGCTCGTCCGGGGCGAGGGTCT | + |
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Preference number: 6 (lower is better) Translates to: CPAPPHGHGLSP*GWWRARPGRGS Trigger: AGACCCTCGCCCCGGACGAGCCCGCCACCAACCGCAAGGCGAGAGGCCATGGCCGTGAGGAGGAGCCGGGCA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| CDS CCA 72 bp | GCTCCTCCTCACGGCCATGGCCTCTCGCCTTGCGGTTaGTGGCGGGCTCGTCCGGGGCGAGGGTCTCGACGG | + |
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Preference number: 6 (lower is better) Translates to: APPHGHGLSPCG*WRARPGRGSRR Trigger: CCGTCGAGACCCTCGCCCCGGACGAGCCCGCCACCAACCGCAAGGCGAGAGGCCATGGCCGTGAGGAGGAGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| CDS CAA 90 bp | CCTCGGAACGTCCGGATCATGGGCGCACAGGCCGGTGGCAGTTTCTaGGAGCGGTGGCTCCTCGATGGCTCCCGGCGGGCGCGCGCCCTG | + |
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Preference number: 6 (lower is better) Translates to: PRNVRIMGAQAGGSF*ERWLLDGSRRARAL Trigger: CAGGGCGCGCGCCCGCCGGGAGCCATCGAGGAGCCACCGCTCCAAGAAACTGCCACCGGCCTGTGCGCCCATGATCCGGACGTTCCGAGG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| CDS GCA 72 bp | CCCGGCGGGCGCGCGCCCTGCTGCTCTAGGTGCAGCTaGAGGAGCGCTCGGCGGTACATGACCTCCAGCTTC | + |
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Preference number: 6 (lower is better) Translates to: PGGRAPCCSRCS*RSARRYMTSSF Trigger: GAAGCTGGAGGTCATGTACCGCCGAGCGCTCCTGCAGCTGCACCTAGAGCAGCAGGGCGCGCGCCCGCCGGG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| CDS CAA 72 bp | GTCCGGATCATGGGCGCACAGGCCGGTGGCAGTTTCTaGGAGCGGTGGCTCCTCGATGGCTCCCGGCGGGCG | + |
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Preference number: 6 (lower is better) Translates to: VRIMGAQAGGSF*ERWLLDGSRRA Trigger: CGCCCGCCGGGAGCCATCGAGGAGCCACCGCTCCAAGAAACTGCCACCGGCCTGTGCGCCCATGATCCGGAC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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| CDS CCA 72 bp | GCCTCGGAACGTCCGGATCATGGGCGCACAGGCCGGTaGCAGTTTCTTGGAGCGGTGGCTCCTCGATGGCTC | + |
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Preference number: 6 (lower is better) Translates to: ASERPDHGRTGR*QFLGAVAPRWL Trigger: GAGCCATCGAGGAGCCACCGCTCCAAGAAACTGCCACCGGCCTGTGCGCCCATGATCCGGACGTTCCGAGGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066774.6 |
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