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Pregenerated sensors for TUG1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000056579

Ensembl transcript IDs: ENSMUST00000193809.2

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp AACACTTTCCCACGTGTTTCTGTACAGAAGAAGTTCAGGGAACCTTCCCATCTCGATTACAGAGTGACTTaGCTAAGGTCACTCGGCCAG +
Preference number: 2 (lower is better)
Translates to: NTFPRVSVQKKFREPSHLDYRVT*LRSLGQ
Trigger: CTGGCCGAGTGACCTTAGGCAAGTCACTCTGTAATC...GAGATGGGAAGGTTCCCTGAACTTCTTCTGTACAGAAACACGTGGGAAAGTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193809.2
3UTR-3UTR TCA 90 bp ACTCATCCCCCTAGAAAACACTTTCCCACGTGTTTCTGTACAGAAGAAGTTCAGAATGAGCAATTGTTATaGCTTCTTGCAACTCAAAGG +
Preference number: 2 (lower is better)
Translates to: THPPRKHFPTCFCTEEVQNEQLL*LLATQR
Trigger: CCTTTGAGTTGCAAGAAGTCATAACAATTGCTCATT...CTGAACTTCTTCTGTACAGAAACACGTGGGAAAGTGTTTTCTAGGGGGATGAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193809.2
3UTR GCA 72 bp GAGGAAACTGAGGCGCAGACAGATTACAGAGTGACTTaGCTAAGGTCACTCGGCCAGCGAGTGGCTAGGCCC +
Preference number: 3 (lower is better)
Translates to: EETEAQTDYRVT*LRSLGQRVARP
Trigger: GGGCCTAGCCACTCGCTGGCCGAGTGACCTTAGGCAAGTCACTCTGTAATCTGTCTGCGCCTCAGTTTCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193809.2
3UTR TCA 72 bp AATTCCATACACACACTGATAGGCAGAGGAGGAAACTaGGGCGCAGACAGATTACAGAGTGACTTGCCTAAG +
Preference number: 3 (lower is better)
Translates to: NSIHTLIGRGGN*GADRLQSDLPK
Trigger: CTTAGGCAAGTCACTCTGTAATCTGTCTGCGCCTCAGTTTCCTCCTCTGCCTATCAGTGTGTGTATGGAATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193809.2
CDS-3UTR GCA 90 bp CTCGCTACTGAAGGATCTACTCATCCCCCTAGAAAACACTTTCCCACGTGTTTCCCGCCGCCCGAGTTCTaGGTACGAGAAGAAAGACGC +
Preference number: 4 (lower is better)
Translates to: LATEGSTHPPRKHFPTCFPPPEF*VREERR
Trigger: GCGTCTTTCTTCTCGTACGCAGAACTCGGGCGGCGG...GAAACACGTGGGAAAGTGTTTTCTAGGGGGATGAGTAGATCCTTCAGTAGCGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193809.2
CDS-3UTR TCA 90 bp AACACTTTCCCACGTGTTTCTGTACAGAAGAAGTTCAGGGAACCTTCCCATCTCCCTCCAGCTCCCTCTTaGCCCTCCAACTGGGTCCTA +
Preference number: 4 (lower is better)
Translates to: NTFPRVSVQKKFREPSHLPPAPS*PSNWVL
Trigger: TAGGACCCAGTTGGAGGGTCAAGAGGGAGCTGGAGG...GAGATGGGAAGGTTCCCTGAACTTCTTCTGTACAGAAACACGTGGGAAAGTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193809.2
CDS-3UTR GCA 90 bp GAAAACACTTTCCCACGTGTTTCTGTACAGAAGAAGTTCAGGGAACCTTCCCATGCCCCAAGAGCTGGATaGCAGAGCAGGAGAAAGAGC +
Preference number: 4 (lower is better)
Translates to: ENTFPRVSVQKKFREPSHAPRAG*QSRRKS
Trigger: GCTCTTTCTCCTGCTCTGGCATCCAGCTCTTGGGGC...ATGGGAAGGTTCCCTGAACTTCTTCTGTACAGAAACACGTGGGAAAGTGTTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000193809.2
CDS GCA 90 bp CGACCCCTCGTCGGATCGCAAAAGCATAGGCCGCCGCCCGAGTTCTaGGTACGAGAAGAAAGACGCGGCGCGAGCGCCAACGGCCACCGG +
Preference number: 5 (lower is better)
Translates to: RPLVGSQKHRPPPEF*VREERRGASANGHR
Trigger: CCGGTGGCCGTTGGCGCTCGCGCCGCGTCTTTCTTCTCGTACGCAGAACTCGGGCGGCGGCCTATGCTTTTGCGATCCGACGAGGGGTCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000193809.2
CDS TCA 90 bp AGGCAAAGGAGGAAGCCCACCACCAACCATCCTCCAGCTCCCTCTTaGCCCTCCAACTGGGTCCTAGCAGGCCCCGAGGGGTGGCGCCAG +
Preference number: 5 (lower is better)
Translates to: RQRRKPTTNHPPAPS*PSNWVLAGPEGWRQ
Trigger: CTGGCGCCACCCCTCGGGGCCTGCTAGGACCCAGTTGGAGGGTCAAGAGGGAGCTGGAGGATGGTTGGTGGTGGGCTTCCTCCTTTGCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000193809.2
CDS-3UTR CAA 90 bp AACTCGCTACTGAAGGATCTACTCATCCCCCTAGAAAACACTTTCCCACGTGTTTCCTCCAGCTCCCTCTaGACCCTCCAACTGGGTCCT +
Preference number: 5 (lower is better)
Translates to: NSLLKDLLIPLENTFPRVSSSSL*TLQLGP
Trigger: AGGACCCAGTTGGAGGGTCAAGAGGGAGCTGGAGGA...AACACGTGGGAAAGTGTTTTCTAGGGGGATGAGTAGATCCTTCAGTAGCGAGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193809.2
CDS CAA 90 bp AAGGCAAAGGAGGAAGCCCACCACCAACCATCCTCCAGCTCCCTCTaGACCCTCCAACTGGGTCCTAGCAGGCCCCGAGGGGTGGCGCCA +
Preference number: 6 (lower is better)
Translates to: KAKEEAHHQPSSSSL*TLQLGPSRPRGVAP
Trigger: TGGCGCCACCCCTCGGGGCCTGCTAGGACCCAGTTGGAGGGTCAAGAGGGAGCTGGAGGATGGTTGGTGGTGGGCTTCCTCCTTTGCCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000193809.2
CDS GCA 72 bp GTCGGATCGCAAAAGCATAGGCCGCCGCCCGAGTTCTaGGTACGAGAAGAAAGACGCGGCGCGAGCGCCAAC +
Preference number: 6 (lower is better)
Translates to: VGSQKHRPPPEF*VREERRGASAN
Trigger: GTTGGCGCTCGCGCCGCGTCTTTCTTCTCGTACGCAGAACTCGGGCGGCGGCCTATGCTTTTGCGATCCGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193809.2