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Pregenerated sensors for TUBG2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000045007

Ensembl transcript IDs: ENSMUST00000043654.10

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGGAAGACAGGAACAGTTCCTAAATTGCACATGAACACAAAAATGTaGGGCGAAGTTGGGTCAGAGGGTCTGGGCGTGGTGGGGACTGTG +
Preference number: 1 (lower is better)
Translates to: RKTGTVPKLHMNTKM*GEVGSEGLGVVGTV
Trigger: CACAGTCCCCACCACGCCCAGACCCTCTGACCCAACTTCGCCTCACATTTTTGTGTTCATGTGCAATTTAGGAACTGTTCCTGTCTTCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043654.10
3UTR CCA 72 bp TGTGAGGCGAAGTTGGGTCAGAGGGTCTGGGCGTGGTaGGGACTGTGCTTCTTGTCCAGGGGACAGCAGAGA +
Preference number: 3 (lower is better)
Translates to: CEAKLGQRVWAW*GLCFLSRGQQR
Trigger: TCTCTGCTGTCCCCTGGACAAGAAGCACAGTCCCCACCACGCCCAGACCCTCTGACCCAACTTCGCCTCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043654.10
3UTR CCA 72 bp AAATGTGAGGCGAAGTTGGGTCAGAGGGTCTGGGCGTaGTGGGGACTGTGCTTCTTGTCCAGGGGACAGCAG +
Preference number: 3 (lower is better)
Translates to: KCEAKLGQRVWA*WGLCFLSRGQQ
Trigger: CTGCTGTCCCCTGGACAAGAAGCACAGTCCCCACCACGCCCAGACCCTCTGACCCAACTTCGCCTCACATTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043654.10
3UTR-3UTR CAA 90 bp CAAGCCAGCCAAGCGCCAGGGGTGAAAAGGAAGACAGGAACAGTTCCTAAATTGTGGGGACTGTGCTTCTaGTCCAGGGGACAGCAGAGA +
Preference number: 3 (lower is better)
Translates to: QASQAPGVKRKTGTVPKLWGLCF*SRGQQR
Trigger: TCTCTGCTGTCCCCTGGACAAGAAGCACAGTCCCCA...CAATTTAGGAACTGTTCCTGTCTTCCTTTTCACCCCTGGCGCTTGGCTGGCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000043654.10
3UTR TCA 72 bp GGAACAGTTCCTAAATTGCACATGAACACAAAAATGTaGGGCGAAGTTGGGTCAGAGGGTCTGGGCGTGGTG +
Preference number: 3 (lower is better)
Translates to: GTVPKLHMNTKM*GEVGSEGLGVV
Trigger: CACCACGCCCAGACCCTCTGACCCAACTTCGCCTCACATTTTTGTGTTCATGTGCAATTTAGGAACTGTTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043654.10
3UTR-3UTR CAA 90 bp CAATGCATCATCACGCTTTATTTATTAGAACTTAACCAAGCCAGCCAAGCGCCAAAATGTGAGGCGAAGTaGGGTCAGAGGGTCTGGGCG +
Preference number: 3 (lower is better)
Translates to: QCIITLYLLELNQASQAPKCEAK*GQRVWA
Trigger: CGCCCAGACCCTCTGACCCAACTTCGCCTCACATTT...TGGCGCTTGGCTGGCTTGGTTAAGTTCTAATAAATAAAGCGTGATGATGCATTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043654.10
CDS-3UTR GCA 90 bp AGGCGAAGTTGGGTCAGAGGGTCTGGGCGTGGTGGGGACTGTGCTTCTTGTCCACTCTGCCCCAGTTGTTaGCAGCTCCTCCGCCATGCT +
Preference number: 4 (lower is better)
Translates to: RRSWVRGSGRGGDCASCPLCPSC*QLLRHA
Trigger: AGCATGGCGGAGGAGCTGGCAACAACTGGGGCAGAG...TGGACAAGAAGCACAGTCCCCACCACGCCCAGACCCTCTGACCCAACTTCGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043654.10
CDS-3UTR CCA 90 bp GTGAGGCGAAGTTGGGTCAGAGGGTCTGGGCGTGGTGGGGACTGTGCTTCTTGTAGGCTCTTGTGGACCTaGGTGGGGTCTACCTCTCCC +
Preference number: 4 (lower is better)
Translates to: VRRSWVRGSGRGGDCASCRLLWT*VGSTSP
Trigger: GGGAGAGGTAGACCCCACCCAGGTCCACAAGAGCCT...ACAAGAAGCACAGTCCCCACCACGCCCAGACCCTCTGACCCAACTTCGCCTCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043654.10
CDS-3UTR TCA 90 bp CGAAGTTGGGTCAGAGGGTCTGGGCGTGGTGGGGACTGTGCTTCTTGTCCAGGGCTGGGCCCCAGGGAATaGAGTTGGCCAGTTTCCTTT +
Preference number: 4 (lower is better)
Translates to: RSWVRGSGRGGDCASCPGLGPRE*SWPVSF
Trigger: AAAGGAAACTGGCCAACTTCATTCCCTGGGGCCCAG...CCCTGGACAAGAAGCACAGTCCCCACCACGCCCAGACCCTCTGACCCAACTTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043654.10
CDS-3UTR CCA 90 bp AGGCGAAGTTGGGTCAGAGGGTCTGGGCGTGGTGGGGACTGTGCTTCTTGTCCAACGCAGTCCGCATTCTaGGTCAGCCTCTTTAGTGTG +
Preference number: 4 (lower is better)
Translates to: RRSWVRGSGRGGDCASCPTQSAF*VSLFSV
Trigger: CACACTAAAGAGGCTGACCCAGAATGCGGACTGCGT...TGGACAAGAAGCACAGTCCCCACCACGCCCAGACCCTCTGACCCAACTTCGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043654.10
CDS-3UTR TCA 90 bp AGTTGGGTCAGAGGGTCTGGGCGTGGTGGGGACTGTGCTTCTTGTCCAGGGGACTCAAAGATGTCCTCGTaGATTTTCTCACCCTGGGAG +
Preference number: 4 (lower is better)
Translates to: SWVRGSGRGGDCASCPGDSKMSS*IFSPWE
Trigger: CTCCCAGGGTGAGAAAATTCACGAGGACATCTTTGA...GTCCCCTGGACAAGAAGCACAGTCCCCACCACGCCCAGACCCTCTGACCCAACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000043654.10
CDS-3UTR GCA 90 bp GAGGCGAAGTTGGGTCAGAGGGTCTGGGCGTGGTGGGGACTGTGCTTCTTGTCCGTAGTGCTCATCATCTaGCTGGTAGAAAAAGACATC +
Preference number: 4 (lower is better)
Translates to: EAKLGQRVWAWWGLCFLSVVLII*LVEKDI
Trigger: GATGTCTTTTTCTACCAGGCAGATGATGAGCACTAC...GGACAAGAAGCACAGTCCCCACCACGCCCAGACCCTCTGACCCAACTTCGCCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043654.10
CDS-3UTR GCA 90 bp AGTTGGGTCAGAGGGTCTGGGCGTGGTGGGGACTGTGCTTCTTGTCCAGGGGACCACAGTTTGTCATACTaGTGGCAGGAACTTTCAAAA +
Preference number: 4 (lower is better)
Translates to: SWVRGSGRGGDCASCPGDHSLSY*WQELSK
Trigger: TTTTGAAAGTTCCTGCCAGCAGTATGACAAACTGTG...GTCCCCTGGACAAGAAGCACAGTCCCCACCACGCCCAGACCCTCTGACCCAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043654.10
CDS-3UTR CCA 90 bp GAGGCGAAGTTGGGTCAGAGGGTCTGGGCGTGGTGGGGACTGTGCTTCTTGTCCAGTTTGTCATACTGCTaGCAGGAACTTTCAAAAAGC +
Preference number: 4 (lower is better)
Translates to: EAKLGQRVWAWWGLCFLSSLSYC*QELSKS
Trigger: GCTTTTTGAAAGTTCCTGCCAGCAGTATGACAAACT...GGACAAGAAGCACAGTCCCCACCACGCCCAGACCCTCTGACCCAACTTCGCCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043654.10
CDS-3UTR TCA 90 bp ATCACGCTTTATTTATTAGAACTTAACCAAGCCAGCCAAGCGCCAGGGGTGAAACCCCCAGCAATGGAGTaGCATAGCACAAATCCCTCT +
Preference number: 4 (lower is better)
Translates to: ITLYLLELNQASQAPGVKPPAME*HSTNPS
Trigger: AGAGGGATTTGTGCTATGTCACTCCATTGCTGGGGG...TTTCACCCCTGGCGCTTGGCTGGCTTGGTTAAGTTCTAATAAATAAAGCGTGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043654.10
CDS-3UTR GCA 90 bp GAACTTAACCAAGCCAGCCAAGCGCCAGGGGTGAAAAGGAAGACAGGAACAGTTACTGTCACTTCCATCTaGTTCTCGGTCTATAATGTC +
Preference number: 4 (lower is better)
Translates to: ELNQASQAPGVKRKTGTVTVTSI*FSVYNV
Trigger: GACATTATAGACCGAGAAGCAGATGGAAGTGACAGT...AACTGTTCCTGTCTTCCTTTTCACCCCTGGCGCTTGGCTGGCTTGGTTAAGTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043654.10
CDS-3UTR TCA 90 bp CAATGCATCATCACGCTTTATTTATTAGAACTTAACCAAGCCAGCCAAGCGCCATCAGCCTCTTTAGTGTaGGGAGGGAGTTGTAGGGCT +
Preference number: 4 (lower is better)
Translates to: QCIITLYLLELNQASQAPSASLV*GGSCRA
Trigger: AGCCCTACAACTCCCTCCTCACACTAAAGAGGCTGA...TGGCGCTTGGCTGGCTTGGTTAAGTTCTAATAAATAAAGCGTGATGATGCATTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043654.10
CDS-3UTR CAA 90 bp GTTGGGTCAGAGGGTCTGGGCGTGGTGGGGACTGTGCTTCTTGTCCAGGGGACACCCCAGGGAATGAAGTaGGCCAGTTTCCTTTCCCGG +
Preference number: 5 (lower is better)
Translates to: VGSEGLGVVGTVLLVQGTPQGMK*ASFLSR
Trigger: CCGGGAAAGGAAACTGGCCAACTTCATTCCCTGGGG...TGTCCCCTGGACAAGAAGCACAGTCCCCACCACGCCCAGACCCTCTGACCCAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000043654.10
CDS-3UTR CAA 90 bp GAGGCGAAGTTGGGTCAGAGGGTCTGGGCGTGGTGGGGACTGTGCTTCTTGTCCTGCATCTCCTCAAAGTaGTCCTTGAAGATGTCCTCC +
Preference number: 5 (lower is better)
Translates to: EAKLGQRVWAWWGLCFLSCISSK*SLKMSS
Trigger: GGAGGACATCTTCAAGGACAACTTTGAGGAGATGCA...GGACAAGAAGCACAGTCCCCACCACGCCCAGACCCTCTGACCCAACTTCGCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043654.10
CDS-3UTR CAA 90 bp ATTGCACATGAACACAAAAATGTGAGGCGAAGTTGGGTCAGAGGGTCTGGGCGTCCCCGCTTCCACAGTTaGTCATACTGCTGGCAGGAA +
Preference number: 5 (lower is better)
Translates to: IAHEHKNVRRSWVRGSGRPRFHS*SYCWQE
Trigger: TTCCTGCCAGCAGTATGACAAACTGTGGAAGCGGGG...ACGCCCAGACCCTCTGACCCAACTTCGCCTCACATTTTTGTGTTCATGTGCAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043654.10