Pregenerated sensors for TUBG1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035198Ensembl transcript IDs: ENSMUST00000043680.9
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | TGCGTGTGTACGCGAGGACTTGTGAGGTCCCTGATCTGTGCTCCGAGGGGAAGTAGGCTCTTGTGGACCTaGGTGGGGTCCACCTCTCCC | + |
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Preference number: 4 (lower is better) Translates to: CVCTRGLVRSLICAPRGSRLLWT*VGSTSP Trigger: GGGAGAGGTGGACCCCACCCAGGTCCACAAGAGCCT...ACTTCCCCTCGGAGCACAGATCAGGGACCTCACAAGTCCTCGCGTACACACGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043680.9 |
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| CDS-3UTR CCA 90 bp | ACGGTGCGTGTGTACGCGAGGACTTGTGAGGTCCCTGATCTGTGCTCCGAGGGGCCAGGAGATATAGTCTaGCCGTGTGGCCGCGTGGTA | + |
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Preference number: 4 (lower is better) Translates to: TVRVYARTCEVPDLCSEGPGDIV*PCGRVV Trigger: TACCACGCGGCCACACGGCCAGACTATATCTCCTGG...CCCCTCGGAGCACAGATCAGGGACCTCACAAGTCCTCGCGTACACACGCACCGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043680.9 |
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| CDS-3UTR GCA 90 bp | AGCCGACAGACGGTGCGTGTGTACGCGAGGACTTGTGAGGTCCCTGATCTGTGCCGTCCTTTCGGTCAGTaGCCTCCGTGGCGAACTCTT | + |
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Preference number: 4 (lower is better) Translates to: SRQTVRVYARTCEVPDLCRPFGQ*PPWRTL Trigger: AAGAGTTCGCCACGGAGGGCACTGACCGAAAGGACG...GCACAGATCAGGGACCTCACAAGTCCTCGCGTACACACGCACCGTCTGTCGGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043680.9 |
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| CDS-3UTR TCA 90 bp | TGTACGCGAGGACTTGTGAGGTCCCTGATCTGTGCTCCGAGGGGAAGTCAGCCTCTGGGCCCCAGGGGATaGAGTTGGCCAGTTTCCTTT | + |
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Preference number: 4 (lower is better) Translates to: CTRGLVRSLICAPRGSQPLGPRG*SWPVSF Trigger: AAAGGAAACTGGCCAACTTCATCCCCTGGGGCCCAG...AGGCTGACTTCCCCTCGGAGCACAGATCAGGGACCTCACAAGTCCTCGCGTACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043680.9 |
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| CDS-3UTR CCA 90 bp | GTGTACGCGAGGACTTGTGAGGTCCCTGATCTGTGCTCCGAGGGGAAGTCAGCCTTGTCTTCCTCACACTaGCCACTGACTGGTCCGTGG | + |
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Preference number: 4 (lower is better) Translates to: VYARTCEVPDLCSEGKSALSSSH*PLTGPW Trigger: CCACGGACCAGTCAGTGGCCAGTGTGAGGAAGACAA...GGCTGACTTCCCCTCGGAGCACAGATCAGGGACCTCACAAGTCCTCGCGTACAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043680.9 |
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| CDS-3UTR CCA 90 bp | GCCGACAGACGGTGCGTGTGTACGCGAGGACTTGTGAGGTCCCTGATCTGTGCTCGCAGCTTGTCAAACTaGCGACAGGTCCGTTCGAAG | + |
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Preference number: 4 (lower is better) Translates to: ADRRCVCTRGLVRSLICARSLSN*RQVRSK Trigger: CTTCGAACGGACCTGTCGCCAGTTTGACAAGCTGCG...AGCACAGATCAGGGACCTCACAAGTCCTCGCGTACACACGCACCGTCTGTCGGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043680.9 |
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| CDS-3UTR CCA 90 bp | ACTCTCAGAGAAGAAGTAAACCCACCCCCAAGCCGACAGACGGTGCGTGTGTACGGCCGTGTGGCCGCGTaGTACTCGTCAATCAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: TLREEVNPPPSRQTVRVYGRVAA*YSSISC Trigger: GCAGCTGATTGACGAGTACCACGCGGCCACACGGCC...GTACACACGCACCGTCTGTCGGCTTGGGGGTGGGTTTACTTCTTCTCTGAGAGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043680.9 |
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| CDS-3UTR CCA 90 bp | CGTGTGTACGCGAGGACTTGTGAGGTCCCTGATCTGTGCTCCGAGGGGAAGTCATATAGTCTGGCCGTGTaGCCGCGTGGTACTCGTCAA | + |
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Preference number: 4 (lower is better) Translates to: RVYARTCEVPDLCSEGKSYSLAV*PRGTRQ Trigger: TTGACGAGTACCACGCGGCCACACGGCCAGACTATA...TGACTTCCCCTCGGAGCACAGATCAGGGACCTCACAAGTCCTCGCGTACACACG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043680.9 |
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| CDS-3UTR CCA 90 bp | TGTACGCGAGGACTTGTGAGGTCCCTGATCTGTGCTCCGAGGGGAAGTCAGCCTACACCATCACATTCTTaGGCTGTAGCAGGCGCCTCA | + |
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Preference number: 4 (lower is better) Translates to: CTRGLVRSLICAPRGSQPTPSHS*AVAGAS Trigger: TGAGGCGCCTGCTACAGCCCAAGAATGTGATGGTGT...AGGCTGACTTCCCCTCGGAGCACAGATCAGGGACCTCACAAGTCCTCGCGTACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043680.9 |
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| CDS-3UTR TCA 90 bp | TGTACGCGAGGACTTGTGAGGTCCCTGATCTGTGCTCCGAGGGGAAGTCAGCCTTCAGCCTCTTTAGTGTaGGGAGGGAGTTGTAGGGTT | + |
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Preference number: 4 (lower is better) Translates to: CTRGLVRSLICAPRGSQPSASLV*GGSCRV Trigger: AACCCTACAACTCCCTCCTCACACTAAAGAGGCTGA...AGGCTGACTTCCCCTCGGAGCACAGATCAGGGACCTCACAAGTCCTCGCGTACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043680.9 |
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| CDS-3UTR GCA 90 bp | ACGGTGCGTGTGTACGCGAGGACTTGTGAGGTCCCTGATCTGTGCTCCGAGGGGGTAGTGCTCATCATCTaGCTGGTAGAAAAAGACGTC | + |
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Preference number: 4 (lower is better) Translates to: TVRVYARTCEVPDLCSEGVVLII*LVEKDV Trigger: GACGTCTTTTTCTACCAGGCAGATGATGAGCACTAC...CCCCTCGGAGCACAGATCAGGGACCTCACAAGTCCTCGCGTACACACGCACCGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000043680.9 |
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| CDS-3UTR GCA 90 bp | AATACTCTCAGAGAAGAAGTAAACCCACCCCCAAGCCGACAGACGGTGCGTGTGTCGTCAATCAGCTGCTaGACAATCTCCCTGGAGGTG | + |
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Preference number: 4 (lower is better) Translates to: NTLREEVNPPPSRQTVRVSSISC*TISLEV Trigger: CACCTCCAGGGAGATTGTGCAGCAGCTGATTGACGA...CACACGCACCGTCTGTCGGCTTGGGGGTGGGTTTACTTCTTCTCTGAGAGTATT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043680.9 |
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| CDS-3UTR CCA 90 bp | TGTACGCGAGGACTTGTGAGGTCCCTGATCTGTGCTCCGAGGGGAAGTCAGCCTTCATCTCATCCTGGTTaGGGAACACAGAGTATGTCT | + |
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Preference number: 4 (lower is better) Translates to: CTRGLVRSLICAPRGSQPSSHPG*GTQSMS Trigger: AGACATACTCTGTGTTCCCCAACCAGGATGAGATGA...AGGCTGACTTCCCCTCGGAGCACAGATCAGGGACCTCACAAGTCCTCGCGTACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043680.9 |
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| CDS-3UTR TCA 90 bp | AAATACTCTCAGAGAAGAAGTAAACCCACCCCCAAGCCGACAGACGGTGCGTGTCCCCCAGCAATGGAATaGCACAGTACAAATCCCTCT | + |
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Preference number: 4 (lower is better) Translates to: KYSQRRSKPTPKPTDGACPPAME*HSTNPS Trigger: AGAGGGATTTGTACTGTGTCATTCCATTGCTGGGGG...ACACGCACCGTCTGTCGGCTTGGGGGTGGGTTTACTTCTTCTCTGAGAGTATTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000043680.9 |
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| CDS-3UTR CAA 90 bp | ACGCGAGGACTTGTGAGGTCCCTGATCTGTGCTCCGAGGGGAAGTCAGCCTGGCCCCCAGGGGATGAAGTaGGCCAGTTTCCTTTCCCGG | + |
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Preference number: 5 (lower is better) Translates to: TRGLVRSLICAPRGSQPGPQGMK*ASFLSR Trigger: CCGGGAAAGGAAACTGGCCAACTTCATCCCCTGGGG...GCCAGGCTGACTTCCCCTCGGAGCACAGATCAGGGACCTCACAAGTCCTCGCGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000043680.9 |
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| CDS-3UTR CAA 90 bp | CGTGTGTACGCGAGGACTTGTGAGGTCCCTGATCTGTGCTCCGAGGGGAAGTCACTCATCTCATCCTGGTaGGGGAACACAGAGTATGTC | + |
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Preference number: 5 (lower is better) Translates to: RVYARTCEVPDLCSEGKSLISSW*GNTEYV Trigger: GACATACTCTGTGTTCCCCAACCAGGATGAGATGAG...TGACTTCCCCTCGGAGCACAGATCAGGGACCTCACAAGTCCTCGCGTACACACG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043680.9 |
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| CDS-3UTR CAA 90 bp | GTGTACGCGAGGACTTGTGAGGTCCCTGATCTGTGCTCCGAGGGGAAGTCAGCCGTCTGCACTAGTTTTTaGGGGTACCTGTCATTTAGC | + |
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Preference number: 5 (lower is better) Translates to: VYARTCEVPDLCSEGKSAVCTSF*GYLSFS Trigger: GCTAAATGACAGGTACCCCAAAAAACTAGTGCAGAC...GGCTGACTTCCCCTCGGAGCACAGATCAGGGACCTCACAAGTCCTCGCGTACAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000043680.9 |
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