Pregenerated sensors for TUBE1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019845Ensembl transcript IDs: ENSMUST00000019991.8, ENSMUST00000213459.2
Found 98 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCTCAGCTTCTCCCCTCACAAGGCCACACTCAACCTGGGCACATCTaGCACAGGCAGGCTCTTTGTGGCATCGAGGTCACTGTACTCCTG | + |
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Preference number: 1 (lower is better) Translates to: SQLLPSQGHTQPGHI*HRQALCGIEVTVLL Trigger: CAGGAGTACAGTGACCTCGATGCCACAAAGAGCCTGCCTGTGCCAGATGTGCCCAGGTTGAGTGTGGCCTTGTGAGGGGAGAAGCTGAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR CCA 90 bp | CCCAGGCTGGCCCTGAACGCAGGCCCTCCTGCATGTCAGCCACACTaGGATTACACTTGTGTAACACCATGTTGGGTTCTCTCTCATCTC | + |
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Preference number: 1 (lower is better) Translates to: PRLALNAGPPACQPH*DYTCVTPCWVLSHL Trigger: GAGATGAGAGAGAACCCAACATGGTGTTACACAAGTGTAATCCCAGTGTGGCTGACATGCAGGAGGGCCTGCGTTCAGGGCCAGCCTGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019991.8 ENSMUST00000213459.2 |
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| 3UTR CCA 90 bp | ACAACTGCTTTCTCAGCTTCTCCCCTCACAAGGCCACACTCAACCTaGGCACATCTGGCACAGGCAGGCTCTTTGTGGCATCGAGGTCAC | + |
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Preference number: 1 (lower is better) Translates to: TTAFSASPLTRPHST*AHLAQAGSLWHRGH Trigger: GTGACCTCGATGCCACAAAGAGCCTGCCTGTGCCAGATGTGCCCAGGTTGAGTGTGGCCTTGTGAGGGGAGAAGCTGAGAAAGCAGTTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR GCA 90 bp | TTTGTTGCACGAGTAGCCCAGGCTGGCCCTGAACGCAGGCCCTCCTaGATGTCAGCCACACTGGGATTACACTTGTGTAACACCATGTTG | + |
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Preference number: 1 (lower is better) Translates to: FVARVAQAGPERRPS*MSATLGLHLCNTML Trigger: CAACATGGTGTTACACAAGTGTAATCCCAGTGTGGCTGACATGCAGGAGGGCCTGCGTTCAGGGCCAGCCTGGGCTACTCGTGCAACAAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019991.8 ENSMUST00000213459.2 |
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| 3UTR GCA 90 bp | GGAAATTGCCATGCACACAAGGTGATGGGAGGGGGTAGTGAGGAATaGACAGAGGAGTGCAGGGGGAGAAAGAGTCACGTGGGACAGGAA | + |
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Preference number: 1 (lower is better) Translates to: GNCHAHKVMGGGSEE*TEECRGRKSHVGQE Trigger: TTCCTGTCCCACGTGACTCTTTCTCCCCCTGCACTCCTCTGTGCATTCCTCACTACCCCCTCCCATCACCTTGTGTGCATGGCAATTTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR GCA 90 bp | CTCTTGGGTGGGTTCACTGGTCTCAGAGAACGGGGCCATGGAAATTaGCATGCACACAAGGTGATGGGAGGGGGTAGTGAGGAATGCACA | + |
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Preference number: 1 (lower is better) Translates to: LLGGFTGLRERGHGN*HAHKVMGGGSEECT Trigger: TGTGCATTCCTCACTACCCCCTCCCATCACCTTGTGTGCATGGCAATTTCCATGGCCCCGTTCTCTGAGACCAGTGAACCCACCCAAGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR TCA 90 bp | GTAGGGACTGAGGGACAGGGGAGAACCTGGAGGGCAAGTCTGCTTTaGTATGCTCAACAGGCACCTCAGCCGCTTGTCTCATGTCTGAAA | + |
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Preference number: 1 (lower is better) Translates to: VGTEGQGRTWRASLL*YAQQAPQPLVSCLK Trigger: TTTCAGACATGAGACAAGCGGCTGAGGTGCCTGTTGAGCATATCAAAGCAGACTTGCCCTCCAGGTTCTCCCCTGTCCCTCAGTCCCTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR TCA 90 bp | GATGGCAGGCAGTATGGTGCTTCCTTCAGTGTAACCATGACAACCTaGTGTGCACACAGCACATGCATTCATCTATCCACCACCCAGCCC | + |
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Preference number: 1 (lower is better) Translates to: DGRQYGASFSVTMTT*CAHSTCIHLSTTQP Trigger: GGGCTGGGTGGTGGATAGATGAATGCATGTGCTGTGTGCACATCAGGTTGTCATGGTTACACTGAAGGAAGCACCATACTGCCTGCCATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR GCA 90 bp | CAGGCAGTATGGTGCTTCCTTCAGTGTAACCATGACAACCTGATGTaGACACAGCACATGCATTCATCTATCCACCACCCAGCCCAAACT | + |
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Preference number: 1 (lower is better) Translates to: QAVWCFLQCNHDNLM*TQHMHSSIHHPAQT Trigger: AGTTTGGGCTGGGTGGTGGATAGATGAATGCATGTGCTGTGTGCACATCAGGTTGTCATGGTTACACTGAAGGAAGCACCATACTGCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR CCA 90 bp | ATGATTACTGTTAGGTTTGACTGCCCCAGTGAAGGGTCATTTAAGTaGCAGATGCTGTGGGTCACATCTTGTGTGTGTCAGAGGGACTGC | + |
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Preference number: 1 (lower is better) Translates to: MITVRFDCPSEGSFK*QMLWVTSCVCQRDC Trigger: GCAGTCCCTCTGACACACACAAGATGTGACCCACAGCATCTGCCACTTAAATGACCCTTCACTGGGGCAGTCAAACCTAACAGTAATCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR TCA 90 bp | TTGTGTGTGTCAGAGGGACTGCAGAGAACCAGGAGATATATTTTCTaGGCTCAGGATTCTATAGAGCCAAACAGGGAGGCAAGGTTAAGG | + |
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Preference number: 1 (lower is better) Translates to: LCVSEGLQRTRRYIF*AQDSIEPNREARLR Trigger: CCTTAACCTTGCCTCCCTGTTTGGCTCTATAGAATCCTGAGCTCAGAAAATATATCTCCTGGTTCTCTGCAGTCCCTCTGACACACACAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR GCA 90 bp | TCTATAGAGCCAAACAGGGAGGCAAGGTTAAGGCTAAGTCATTCATaGCATAAGGAAAACCCTGACGTAGCTACACAAGGGCGAAAAGCT | + |
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Preference number: 1 (lower is better) Translates to: SIEPNREARLRLSHS*HKENPDVATQGRKA Trigger: AGCTTTTCGCCCTTGTGTAGCTACGTCAGGGTTTTCCTTATGGCATGAATGACTTAGCCTTAACCTTGCCTCCCTGTTTGGCTCTATAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR CCA 90 bp | CCTGCATGTCAGCCACACTGGGATTACACTTGTGTAACACCATGTTaGGTTCTCTCTCATCTCAATTTTGGCAAACTGCCTAAAGTGATA | + |
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Preference number: 1 (lower is better) Translates to: PACQPHWDYTCVTPC*VLSHLNFGKLPKVI Trigger: TATCACTTTAGGCAGTTTGCCAAAATTGAGATGAGAGAGAACCCAACATGGTGTTACACAAGTGTAATCCCAGTGTGGCTGACATGCAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019991.8 ENSMUST00000213459.2 |
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| 3UTR TCA 90 bp | AATATACAAGAGATATGTACATCTTCCCTGAGGCGTTCATCACTGTaGAGATGTCTGCAAAAGACACAAATAAAGCAAGGGGACGACTGC | + |
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Preference number: 1 (lower is better) Translates to: NIQEICTSSLRRSSL*RCLQKTQIKQGDDC Trigger: GCAGTCGTCCCCTTGCTTTATTTGTGTCTTTTGCAGACATCTTCACAGTGATGAACGCCTCAGGGAAGATGTACATATCTCTTGTATATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019991.8 ENSMUST00000213459.2 |
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| 3UTR GCA 90 bp | CACTATGTAAACCAGACTGGCCTTGGATTCAGAGACACAGCCATTTaGCTCTGCTTCCAAATTAGTAAACAGCCTATCAATTTGTTACCT | + |
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Preference number: 1 (lower is better) Translates to: HYVNQTGLGFRDTAI*LCFQISKQPINLLP Trigger: AGGTAACAAATTGATAGGCTGTTTACTAATTTGGAAGCAGAGGCAAATGGCTGTGTCTCTGAATCCAAGGCCAGTCTGGTTTACATAGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR-3UTR GCA 90 bp | TCTCAGCTTCTCCCCTCACAAGGCCACACTCAACCTGGGCACATCTGGCACAGGTGCGTCGGCTTTTGTTaGACGAGTAGCCCAGGCTGG | + |
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Preference number: 2 (lower is better) Translates to: SQLLPSQGHTQPGHIWHRCVGFC*TSSPGW Trigger: CCAGCCTGGGCTACTCGTGCAACAAAAGCCGACGCA...CCTGTGCCAGATGTGCCCAGGTTGAGTGTGGCCTTGTGAGGGGAGAAGCTGAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR-3UTR GCA 90 bp | AGGCTGGCCCTGAACGCAGGCCCTCCTGCATGTCAGCCACACTGGGATTACACTACTGCTCCTTCCCTCTaGGTCGGCTTTTGTTGCACG | + |
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Preference number: 2 (lower is better) Translates to: RLALNAGPPACQPHWDYTTAPSL*VGFCCT Trigger: CGTGCAACAAAAGCCGACGCAGAGGGAAGGAGCAGT...AGTGTAATCCCAGTGTGGCTGACATGCAGGAGGGCCTGCGTTCAGGGCCAGCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019991.8 ENSMUST00000213459.2 |
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| 3UTR-3UTR CCA 90 bp | TCTCAGCTTCTCCCCTCACAAGGCCACACTCAACCTGGGCACATCTGGCACAGGAACAGAGAATGCGAGTaGCCCACAGGCGGTACAGAA | + |
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Preference number: 2 (lower is better) Translates to: SQLLPSQGHTQPGHIWHRNRECE*PTGGTE Trigger: TTCTGTACCGCCTGTGGGCCACTCGCATTCTCTGTT...CCTGTGCCAGATGTGCCCAGGTTGAGTGTGGCCTTGTGAGGGGAGAAGCTGAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR-3UTR TCA 90 bp | GAACCTGGAGGGCAAGTCTGCTTTGATATGCTCAACAGGCACCTCAGCCGCTTGCTCCTGTATGAGCGCTaGCAGAGAGGACACAGCTTC | + |
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Preference number: 2 (lower is better) Translates to: EPGGQVCFDMLNRHLSRLLLYER*QRGHSF Trigger: GAAGCTGTGTCCTCTCTGTCAGCGCTCATACAGGAG...CAAGCGGCTGAGGTGCCTGTTGAGCATATCAAAGCAGACTTGCCCTCCAGGTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR-3UTR CCA 90 bp | GAGAACCTGGAGGGCAAGTCTGCTTTGATATGCTCAACAGGCACCTCAGCCGCTAGAAGAGAGGCACAGTaGCTGCAGTCACCTCAGCAC | + |
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Preference number: 2 (lower is better) Translates to: ENLEGKSALICSTGTSAARREAQ*LQSPQH Trigger: GTGCTGAGGTGACTGCAGCCACTGTGCCTCTCTTCT...AGCGGCTGAGGTGCCTGTTGAGCATATCAAAGCAGACTTGCCCTCCAGGTTCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR-3UTR TCA 90 bp | TGTGCACACAGCACATGCATTCATCTATCCACCACCCAGCCCAAACTGTGTGACAGGGCAAGTCTGCTTTaGTATGCTCAACAGGCACCT | + |
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Preference number: 2 (lower is better) Translates to: CAHSTCIHLSTTQPKLCDRASLL*YAQQAP Trigger: AGGTGCCTGTTGAGCATATCAAAGCAGACTTGCCCT...GTCACACAGTTTGGGCTGGGTGGTGGATAGATGAATGCATGTGCTGTGTGCACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR CAA 90 bp | CCTGAACGCAGGCCCTCCTGCATGTCAGCCACACTGGGATTACACTaGTGTAACACCATGTTGGGTTCTCTCTCATCTCAATTTTGGCAA | + |
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Preference number: 2 (lower is better) Translates to: PERRPSCMSATLGLH*CNTMLGSLSSQFWQ Trigger: TTGCCAAAATTGAGATGAGAGAGAACCCAACATGGTGTTACACAAGTGTAATCCCAGTGTGGCTGACATGCAGGAGGGCCTGCGTTCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019991.8 ENSMUST00000213459.2 |
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| 3UTR-3UTR GCA 90 bp | GAACCTGGAGGGCAAGTCTGCTTTGATATGCTCAACAGGCACCTCAGCCGCTTGACTTTCTGTGGAATATaGCTGGACAAGAGATGCTGT | + |
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Preference number: 2 (lower is better) Translates to: EPGGQVCFDMLNRHLSRLTFCGI*LDKRCC Trigger: ACAGCATCTCTTGTCCAGGCATATTCCACAGAAAGT...CAAGCGGCTGAGGTGCCTGTTGAGCATATCAAAGCAGACTTGCCCTCCAGGTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR-3UTR CCA 90 bp | CTGGATGCTCAAGCACTCAGAGTTACAGACCCACTTTCTGTGGAATATGCCTGGGAAGGGTCATTTAAGTaGCAGATGCTGTGGGTCACA | + |
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Preference number: 2 (lower is better) Translates to: LDAQALRVTDPLSVEYAWEGSFK*QMLWVT Trigger: TGTGACCCACAGCATCTGCCACTTAAATGACCCTTC...CCAGGCATATTCCACAGAAAGTGGGTCTGTAACTCTGAGTGCTTGAGCATCCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR-3UTR GCA 90 bp | ACTGGAACTCACTATGTAAACCAGACTGGCCTTGGATTCAGAGACACAGCCATTCCTGGAGGGCAAGTCTaGTTTGATATGCTCAACAGG | + |
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Preference number: 2 (lower is better) Translates to: TGTHYVNQTGLGFRDTAIPGGQV*FDMLNR Trigger: CCTGTTGAGCATATCAAAGCAGACTTGCCCTCCAGG...AATGGCTGTGTCTCTGAATCCAAGGCCAGTCTGGTTTACATAGTGAGTTCCAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR-3UTR GCA 90 bp | TGCTTCCTTCAGTGTAACCATGACAACCTGATGTGCACACAGCACATGCATTCATGCCTGGACAAGAGATaGTGTGTCCCCAACAAATCT | + |
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Preference number: 2 (lower is better) Translates to: CFLQCNHDNLMCTQHMHSCLDKR*CVPNKS Trigger: AGATTTGTTGGGGACACAGCATCTCTTGTCCAGGCA...TGAATGCATGTGCTGTGTGCACATCAGGTTGTCATGGTTACACTGAAGGAAGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR-3UTR GCA 90 bp | GCTTTTAAACCGTTTATTATAAAAAGGGACTGGATGCCAAGTTGTGATTCTTTGGAACGCAGGCCCTCCTaGATGTCAGCCACACTGGGA | + |
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Preference number: 2 (lower is better) Translates to: AFKPFIIKRDWMPSCDSLERRPS*MSATLG Trigger: TCCCAGTGTGGCTGACATGCAGGAGGGCCTGCGTTC...CAAAGAATCACAACTTGGCATCCAGTCCCTTTTTATAATAAACGGTTTAAAAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000019991.8 ENSMUST00000213459.2 |
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| 3UTR-3UTR CCA 90 bp | ATGCTGCAACAGAAAGGGGACAGACAGAACAACTGCTTTCTCAGCTTCTCCCCTTGTGTAACACCATGTTaGGTTCTCTCTCATCTCAAT | + |
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Preference number: 2 (lower is better) Translates to: MLQQKGDRQNNCFLSFSPCVTPC*VLSHLN Trigger: ATTGAGATGAGAGAGAACCCAACATGGTGTTACACA...AGGGGAGAAGCTGAGAAAGCAGTTGTTCTGTCTGTCCCCTTTCTGTTGCAGCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR-3UTR GCA 90 bp | AAACATACCTGTACTGAAACCAACATTAACGATTCAGAAGAGAGGCACAGTGGCGACAGACAGAACAACTaGTTTCTCAGCTTCTCCCCT | + |
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Preference number: 2 (lower is better) Translates to: KHTCTETNINDSEERHSGDRQNN*FLSFSP Trigger: AGGGGAGAAGCTGAGAAAGCAGTTGTTCTGTCTGTC...GCCACTGTGCCTCTCTTCTGAATCGTTAATGTTGGTTTCAGTACAGGTATGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR-3UTR CCA 90 bp | AAACATACCTGTACTGAAACCAACATTAACGATTCAGAAGAGAGGCACAGTGGCGTACAGAACACAGGCTaGTCTTCCAGCCTTCTTGAT | + |
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Preference number: 2 (lower is better) Translates to: KHTCTETNINDSEERHSGVQNTG*SSSLLD Trigger: ATCAAGAAGGCTGGAAGACCAGCCTGTGTTCTGTAC...GCCACTGTGCCTCTCTTCTGAATCGTTAATGTTGGTTTCAGTACAGGTATGTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR-3UTR GCA 90 bp | TTACTAAGATGGTATTATAAATGCATCTATAATCACCATCGCCCTGTCCTGAATACTGCTCCTTCCCTCTaGGTCGGCTTTTGTTGCACG | + |
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Preference number: 2 (lower is better) Translates to: LLRWYYKCIYNHHRPVLNTAPSL*VGFCCT Trigger: CGTGCAACAAAAGCCGACGCAGAGGGAAGGAGCAGT...ATTCAGGACAGGGCGATGGTGATTATAGATGCATTTATAATACCATCTTAGTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019991.8 ENSMUST00000213459.2 |
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| 3UTR-3UTR CCA 90 bp | AAATTACTAAGATGGTATTATAAATGCATCTATAATCACCATCGCCCTGTCCTGAGAAGAGAGGCACAGTaGCTGCAGTCACCTCAGCAC | + |
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Preference number: 2 (lower is better) Translates to: KLLRWYYKCIYNHHRPVLRREAQ*LQSPQH Trigger: GTGCTGAGGTGACTGCAGCCACTGTGCCTCTCTTCT...CAGGACAGGGCGATGGTGATTATAGATGCATTTATAATACCATCTTAGTAATTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019991.8 ENSMUST00000213459.2 |
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| 3UTR-3UTR TCA 90 bp | AAACATACCTGTACTGAAACCAACATTAACGATTCAGAAGAGAGGCACAGTGGCGAACCAAGTTCATGCTaGTCTCATTCAGGTCCATAT | + |
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Preference number: 2 (lower is better) Translates to: KHTCTETNINDSEERHSGEPSSC*SHSGPY Trigger: ATATGGACCTGAATGAGATCAGCATGAACTTGGTTC...GCCACTGTGCCTCTCTTCTGAATCGTTAATGTTGGTTTCAGTACAGGTATGTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR-3UTR TCA 90 bp | GCTTTTAAACCGTTTATTATAAAAAGGGACTGGATGCCAAGTTGTGATTCTTTGGTCTTCCAGCCTTCTTaGTTCCAGGAGACAAACTGC | + |
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Preference number: 2 (lower is better) Translates to: AFKPFIIKRDWMPSCDSLVFQPS*FQETNC Trigger: GCAGTTTGTCTCCTGGAATCAAGAAGGCTGGAAGAC...CAAAGAATCACAACTTGGCATCCAGTCCCTTTTTATAATAAACGGTTTAAAAGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR-3UTR CCA 90 bp | ACTGGAACTCACTATGTAAACCAGACTGGCCTTGGATTCAGAGACACAGCCATTATTATAAAAAGGGACTaGATGCCAAGTTGTGATTCT | + |
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Preference number: 2 (lower is better) Translates to: TGTHYVNQTGLGFRDTAIIIKRD*MPSCDS Trigger: AGAATCACAACTTGGCATCCAGTCCCTTTTTATAAT...AATGGCTGTGTCTCTGAATCCAAGGCCAGTCTGGTTTACATAGTGAGTTCCAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR-3UTR CCA 90 bp | GCTTTTAAACCGTTTATTATAAAAAGGGACTGGATGCCAAGTTGTGATTCTTTGTGTGTAACACCATGTTaGGTTCTCTCTCATCTCAAT | + |
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Preference number: 2 (lower is better) Translates to: AFKPFIIKRDWMPSCDSLCVTPC*VLSHLN Trigger: ATTGAGATGAGAGAGAACCCAACATGGTGTTACACA...CAAAGAATCACAACTTGGCATCCAGTCCCTTTTTATAATAAACGGTTTAAAAGC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000019991.8 ENSMUST00000213459.2 |
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| 3UTR CCA 72 bp | CTTGGGTGGGTTCACTGGTCTCAGAGAACGGGGCCATaGAAATTGCCATGCACACAAGGTGATGGGAGGGGG | + |
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Preference number: 3 (lower is better) Translates to: LGWVHWSQRTGP*KLPCTQGDGRG Trigger: CCCCCTCCCATCACCTTGTGTGCATGGCAATTTCCATGGCCCCGTTCTCTGAGACCAGTGAACCCACCCAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR TCA 72 bp | GAGGGACAGGGGAGAACCTGGAGGGCAAGTCTGCTTTaGTATGCTCAACAGGCACCTCAGCCGCTTGTCTCA | + |
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Preference number: 3 (lower is better) Translates to: EGQGRTWRASLL*YAQQAPQPLVS Trigger: TGAGACAAGCGGCTGAGGTGCCTGTTGAGCATATCAAAGCAGACTTGCCCTCCAGGTTCTCCCCTGTCCCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR GCA 72 bp | GGGTTCACTGGTCTCAGAGAACGGGGCCATGGAAATTaGCATGCACACAAGGTGATGGGAGGGGGTAGTGAG | + |
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Preference number: 3 (lower is better) Translates to: GFTGLRERGHGN*HAHKVMGGGSE Trigger: CTCACTACCCCCTCCCATCACCTTGTGTGCATGGCAATTTCCATGGCCCCGTTCTCTGAGACCAGTGAACCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR CCA 72 bp | TTCTCAGCTTCTCCCCTCACAAGGCCACACTCAACCTaGGCACATCTGGCACAGGCAGGCTCTTTGTGGCAT | + |
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Preference number: 3 (lower is better) Translates to: FSASPLTRPHST*AHLAQAGSLWH Trigger: ATGCCACAAAGAGCCTGCCTGTGCCAGATGTGCCCAGGTTGAGTGTGGCCTTGTGAGGGGAGAAGCTGAGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR TCA 72 bp | GAGAACGGGGCCATGGAAATTGCCATGCACACAAGGTaGTGGGAGGGGGTAGTGAGGAATGCACAGAGGAGT | + |
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Preference number: 3 (lower is better) Translates to: ENGAMEIAMHTR*WEGVVRNAQRS Trigger: ACTCCTCTGTGCATTCCTCACTACCCCCTCCCATCACCTTGTGTGCATGGCAATTTCCATGGCCCCGTTCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR-3UTR CAA 90 bp | AGGCTGGCCCTGAACGCAGGCCCTCCTGCATGTCAGCCACACTGGGATTACACTTTGTGTAACACCATGTaGGGTTCTCTCTCATCTCAA | + |
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Preference number: 3 (lower is better) Translates to: RLALNAGPPACQPHWDYTLCNTM*GSLSSQ Trigger: TTGAGATGAGAGAGAACCCAACATGGTGTTACACAA...AGTGTAATCCCAGTGTGGCTGACATGCAGGAGGGCCTGCGTTCAGGGCCAGCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019991.8 ENSMUST00000213459.2 |
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| 3UTR CCA 72 bp | TGCCCCAGTGAAGGGTCATTTAAGTGGCAGATGCTGTaGGTCACATCTTGTGTGTGTCAGAGGGACTGCAGA | + |
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Preference number: 3 (lower is better) Translates to: CPSEGSFKWQML*VTSCVCQRDCR Trigger: TCTGCAGTCCCTCTGACACACACAAGATGTGACCCACAGCATCTGCCACTTAAATGACCCTTCACTGGGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR CCA 72 bp | GTTAGGTTTGACTGCCCCAGTGAAGGGTCATTTAAGTaGCAGATGCTGTGGGTCACATCTTGTGTGTGTCAG | + |
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Preference number: 3 (lower is better) Translates to: VRFDCPSEGSFK*QMLWVTSCVCQ Trigger: CTGACACACACAAGATGTGACCCACAGCATCTGCCACTTAAATGACCCTTCACTGGGGCAGTCAAACCTAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR-3UTR CAA 90 bp | ACTGGAACTCACTATGTAAACCAGACTGGCCTTGGATTCAGAGACACAGCCATTACGGGGCCATGGAAATaGCCATGCACACAAGGTGAT | + |
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Preference number: 3 (lower is better) Translates to: TGTHYVNQTGLGFRDTAITGPWK*PCTQGD Trigger: ATCACCTTGTGTGCATGGCAATTTCCATGGCCCCGT...AATGGCTGTGTCTCTGAATCCAAGGCCAGTCTGGTTTACATAGTGAGTTCCAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR GCA 72 bp | TGGTGCTTCCTTCAGTGTAACCATGACAACCTGATGTaGACACAGCACATGCATTCATCTATCCACCACCCA | + |
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Preference number: 3 (lower is better) Translates to: WCFLQCNHDNLM*TQHMHSSIHHP Trigger: TGGGTGGTGGATAGATGAATGCATGTGCTGTGTGCACATCAGGTTGTCATGGTTACACTGAAGGAAGCACCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
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| 3UTR-3UTR CAA 90 bp | ACATGCTCAACCGCCGTAGCAGCCGTTTACACATTTGCTTTTAAACCGTTTATTATGTCTGGGGTCTGCTaGGATGAGCTGGTGATCCTT | + |
|
Preference number: 3 (lower is better) Translates to: TCSTAVAAVYTFAFKPFIMSGVC*DELVIL Trigger: AAGGATCACCAGCTCATCCAAGCAGACCCCAGACAT...AATAAACGGTTTAAAAGCAAATGTGTAAACGGCTGCTACGGCGGTTGAGCATGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
||
| 3UTR TCA 72 bp | CAGTATGGTGCTTCCTTCAGTGTAACCATGACAACCTaGTGTGCACACAGCACATGCATTCATCTATCCACC | + |
|
Preference number: 3 (lower is better) Translates to: QYGASFSVTMTT*CAHSTCIHLST Trigger: GGTGGATAGATGAATGCATGTGCTGTGTGCACATCAGGTTGTCATGGTTACACTGAAGGAAGCACCATACTG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
||
| 3UTR-3UTR CAA 90 bp | ACTGGAACTCACTATGTAAACCAGACTGGCCTTGGATTCAGAGACACAGCCATTACACTGGGATTACACTaGTGTAACACCATGTTGGGT | + |
|
Preference number: 3 (lower is better) Translates to: TGTHYVNQTGLGFRDTAITLGLH*CNTMLG Trigger: ACCCAACATGGTGTTACACAAGTGTAATCCCAGTGT...AATGGCTGTGTCTCTGAATCCAAGGCCAGTCTGGTTTACATAGTGAGTTCCAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
||
| 3UTR CCA 72 bp | CAGCCACACTGGGATTACACTTGTGTAACACCATGTTaGGTTCTCTCTCATCTCAATTTTGGCAAACTGCCT | + |
|
Preference number: 3 (lower is better) Translates to: QPHWDYTCVTPC*VLSHLNFGKLP Trigger: AGGCAGTTTGCCAAAATTGAGATGAGAGAGAACCCAACATGGTGTTACACAAGTGTAATCCCAGTGTGGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019991.8 ENSMUST00000213459.2 |
||
| 3UTR-3UTR CAA 90 bp | GGCCTTGGATTCAGAGACACAGCCATTTGCCTCTGCTTCCAAATTAGTAAACAGTTGTGTAACACCATGTaGGGTTCTCTCTCATCTCAA | + |
|
Preference number: 3 (lower is better) Translates to: GLGFRDTAICLCFQISKQLCNTM*GSLSSQ Trigger: TTGAGATGAGAGAGAACCCAACATGGTGTTACACAA...CTGTTTACTAATTTGGAAGCAGAGGCAAATGGCTGTGTCTCTGAATCCAAGGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
||
| 3UTR-3UTR CAA 90 bp | AAATTACTAAGATGGTATTATAAATGCATCTATAATCACCATCGCCCTGTCCTGACACTGGGATTACACTaGTGTAACACCATGTTGGGT | + |
|
Preference number: 3 (lower is better) Translates to: KLLRWYYKCIYNHHRPVLTLGLH*CNTMLG Trigger: ACCCAACATGGTGTTACACAAGTGTAATCCCAGTGT...CAGGACAGGGCGATGGTGATTATAGATGCATTTATAATACCATCTTAGTAATTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019991.8 ENSMUST00000213459.2 |
||
| 3UTR TCA 72 bp | ATTATAAATGCATCTATAATCACCATCGCCCTGTCCTaGATATCAGTTGATTCTTCTAGAAAGGGGAAAATA | + |
|
Preference number: 3 (lower is better) Translates to: IINASIITIALS*ISVDSSRKGKI Trigger: TATTTTCCCCTTTCTAGAAGAATCAACTGATATTCAGGACAGGGCGATGGTGATTATAGATGCATTTATAAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019991.8 ENSMUST00000213459.2 |
||
| CDS-3UTR TCA 90 bp | AGGCTGGCCCTGAACGCAGGCCCTCCTGCATGTCAGCCACACTGGGATTACACTCTCCTGTATGAGCGCTaGCAGAGAGGACACAGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: RLALNAGPPACQPHWDYTLLYER*QRGHSF Trigger: GAAGCTGTGTCCTCTCTGTCAGCGCTCATACAGGAG...AGTGTAATCCCAGTGTGGCTGACATGCAGGAGGGCCTGCGTTCAGGGCCAGCCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019991.8 |
||
| CDS-3UTR TCA 90 bp | AGGCTGGCCCTGAACGCAGGCCCTCCTGCATGTCAGCCACACTGGGATTACACTAAATTCCTTTCTGGTTaGCCGCTGCGTGCTCCCTCA | + |
|
Preference number: 4 (lower is better) Translates to: RLALNAGPPACQPHWDYTKFLSG*PLRAPS Trigger: TGAGGGAGCACGCAGCGGTCAACCAGAAAGGAATTT...AGTGTAATCCCAGTGTGGCTGACATGCAGGAGGGCCTGCGTTCAGGGCCAGCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019991.8 ENSMUST00000213459.2 |
||
| CDS-3UTR GCA 90 bp | AGGCTGGCCCTGAACGCAGGCCCTCCTGCATGTCAGCCACACTGGGATTACACTGGGCAGCACACAGTCTaGATGCTCATTCAGTTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: RLALNAGPPACQPHWDYTGQHTV*MLIQFL Trigger: AAGGAACTGAATGAGCATGCAGACTGTGTGCTGCCC...AGTGTAATCCCAGTGTGGCTGACATGCAGGAGGGCCTGCGTTCAGGGCCAGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019991.8 ENSMUST00000213459.2 |
||
| CDS-3UTR CCA 90 bp | AGGCTGGCCCTGAACGCAGGCCCTCCTGCATGTCAGCCACACTGGGATTACACTTCGAAGGGCTTCTTGTaGTGCTTTTTAACAGCCCCC | + |
|
Preference number: 4 (lower is better) Translates to: RLALNAGPPACQPHWDYTSKGFL*CFLTAP Trigger: GGGGGCTGTTAAAAAGCACCACAAGAAGCCCTTCGA...AGTGTAATCCCAGTGTGGCTGACATGCAGGAGGGCCTGCGTTCAGGGCCAGCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019991.8 |
||
| CDS-3UTR GCA 90 bp | TGTGCACACAGCACATGCATTCATCTATCCACCACCCAGCCCAAACTGTGTGACTTTCTGGTTGACCGCTaGGTGCTCCCTCAGCGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: CAHSTCIHLSTTQPKLCDFLVDR*VLPQRQ Trigger: CTGGCGCTGAGGGAGCACGCAGCGGTCAACCAGAAA...GTCACACAGTTTGGGCTGGGTGGTGGATAGATGAATGCATGTGCTGTGTGCACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
||
| CDS-3UTR CCA 90 bp | AGGCTGGCCCTGAACGCAGGCCCTCCTGCATGTCAGCCACACTGGGATTACACTCCACAATGTTGTTCATaGCGTCGAAGGGCTTCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: RLALNAGPPACQPHWDYTPQCCS*RRRASC Trigger: ACAAGAAGCCCTTCGACGCCATGAACAACATTGTGG...AGTGTAATCCCAGTGTGGCTGACATGCAGGAGGGCCTGCGTTCAGGGCCAGCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019991.8 |
||
| CDS-3UTR GCA 90 bp | ACTGGAACTCACTATGTAAACCAGACTGGCCTTGGATTCAGAGACACAGCCATTTGGTTGACCGCTGCGTaGTCCCTCAGCGCCAGGTCC | + |
|
Preference number: 4 (lower is better) Translates to: TGTHYVNQTGLGFRDTAIWLTAA*SLSARS Trigger: GGACCTGGCGCTGAGGGAGCACGCAGCGGTCAACCA...AATGGCTGTGTCTCTGAATCCAAGGCCAGTCTGGTTTACATAGTGAGTTCCAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
||
| CDS-3UTR GCA 90 bp | TCTCAGCTTCTCCCCTCACAAGGCCACACTCAACCTGGGCACATCTGGCACAGGCCTTTAACAGAAATGTaGCAAGCCCAGAGCCTGTTC | + |
|
Preference number: 4 (lower is better) Translates to: SQLLPSQGHTQPGHIWHRPLTEM*QAQSLF Trigger: GAACAGGCTCTGGGCTTGGCACATTTCTGTTAAAGG...CCTGTGCCAGATGTGCCCAGGTTGAGTGTGGCCTTGTGAGGGGAGAAGCTGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
||
| CDS-3UTR GCA 90 bp | AAACATACCTGTACTGAAACCAACATTAACGATTCAGAAGAGAGGCACAGTGGCTGGTTGACCGCTGCGTaGTCCCTCAGCGCCAGGTCC | + |
|
Preference number: 4 (lower is better) Translates to: KHTCTETNINDSEERHSGWLTAA*SLSARS Trigger: GGACCTGGCGCTGAGGGAGCACGCAGCGGTCAACCA...GCCACTGTGCCTCTCTTCTGAATCGTTAATGTTGGTTTCAGTACAGGTATGTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019991.8 ENSMUST00000213459.2 |
||
| 3UTR CAA 72 bp | AGGCCCTCCTGCATGTCAGCCACACTGGGATTACACTaGTGTAACACCATGTTGGGTTCTCTCTCATCTCAA | + |
|
Preference number: 4 (lower is better) Translates to: RPSCMSATLGLH*CNTMLGSLSSQ Trigger: TTGAGATGAGAGAGAACCCAACATGGTGTTACACAAGTGTAATCCCAGTGTGGCTGACATGCAGGAGGGCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019991.8 ENSMUST00000213459.2 |
||
| CDS-3UTR GCA 90 bp | TACACTTGTGTAACACCATGTTGGGTTCTCTCTCATCTCAATTTTGGCAAACTGTTTCTGGTTGACCGCTaGGTGCTCCCTCAGCGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: YTCVTPCWVLSHLNFGKLFLVDR*VLPQRQ Trigger: CTGGCGCTGAGGGAGCACGCAGCGGTCAACCAGAAA...CAGTTTGCCAAAATTGAGATGAGAGAGAACCCAACATGGTGTTACACAAGTGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019991.8 ENSMUST00000213459.2 |
||
| CDS-3UTR GCA 90 bp | CAGAGTTACAGACCCACTTTCTGTGGAATATGCCTGGACAAGAGATGCTGTGTCGGGCAGCACACAGTCTaGATGCTCATTCAGTTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: QSYRPTFCGICLDKRCCVGQHTV*MLIQFL Trigger: AAGGAACTGAATGAGCATGCAGACTGTGTGCTGCCC...GACACAGCATCTCTTGTCCAGGCATATTCCACAGAAAGTGGGTCTGTAACTCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
||
| CDS-3UTR CCA 90 bp | ACATGCTCAACCGCCGTAGCAGCCGTTTACACATTTGCTTTTAAACCGTTTATTAGGCCACACTCAACCTaGGCACATCTGGCACAGGCA | + |
|
Preference number: 4 (lower is better) Translates to: TCSTAVAAVYTFAFKPFIRPHST*AHLAQA Trigger: TGCCTGTGCCAGATGTGCCCAGGTTGAGTGTGGCCT...AATAAACGGTTTAAAAGCAAATGTGTAAACGGCTGCTACGGCGGTTGAGCATGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019991.8 |
||
| CDS-3UTR TCA 90 bp | AAACATACCTGTACTGAAACCAACATTAACGATTCAGAAGAGAGGCACAGTGGCCATTCAGGTCCATATTaGGGGAGCCCTCAAACCTCG | + |
|
Preference number: 4 (lower is better) Translates to: KHTCTETNINDSEERHSGHSGPY*GSPQTS Trigger: CGAGGTTTGAGGGCTCCCTCAATATGGACCTGAATG...GCCACTGTGCCTCTCTTCTGAATCGTTAATGTTGGTTTCAGTACAGGTATGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019991.8 |
||
| CDS-3UTR CCA 90 bp | ACATGCTCAACCGCCGTAGCAGCCGTTTACACATTTGCTTTTAAACCGTTTATTCCTCCGCCCATGGAGTaGATGATGAAGAAGCACTGT | + |
|
Preference number: 4 (lower is better) Translates to: TCSTAVAAVYTFAFKPFIPPPME*MMKKHC Trigger: ACAGTGCTTCTTCATCATCCACTCCATGGGCGGAGG...AATAAACGGTTTAAAAGCAAATGTGTAAACGGCTGCTACGGCGGTTGAGCATGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019991.8 ENSMUST00000213459.2 |
||
| CDS-3UTR CCA 90 bp | TGCTTCCTTCAGTGTAACCATGACAACCTGATGTGCACACAGCACATGCATTCAAGAGTTGGTTGTCAATaGGCAGCACACAGTCTGCAT | + |
|
Preference number: 4 (lower is better) Translates to: CFLQCNHDNLMCTQHMHSRVGCQ*AAHSLH Trigger: ATGCAGACTGTGTGCTGCCCATTGACAACCAACTCT...TGAATGCATGTGCTGTGTGCACATCAGGTTGTCATGGTTACACTGAAGGAAGCA 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
||
| CDS-3UTR TCA 90 bp | AGAGAGGACACAGCTTCCGTAAAAGTGCTTTCCTCCATCCCATCAACTTGCAGGCATCCAAAAACTTTGTaGCCCACAGCCCAATTATTT | + |
|
Preference number: 4 (lower is better) Translates to: REDTASVKVLSSIPSTCRHPKTL*PTAQLF Trigger: AAATAATTGGGCTGTGGGTCACAAAGTTTTTGGATG...CCTGCAAGTTGATGGGATGGAGGAAAGCACTTTTACGGAAGCTGTGTCCTCTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
||
| CDS-3UTR TCA 90 bp | AAACATACCTGTACTGAAACCAACATTAACGATTCAGAAGAGAGGCACAGTGGCGTCTTCCAGCCTTCTTaGTTCCAGGAGACAAACTGC | + |
|
Preference number: 4 (lower is better) Translates to: KHTCTETNINDSEERHSGVFQPS*FQETNC Trigger: GCAGTTTGTCTCCTGGAATCAAGAAGGCTGGAAGAC...GCCACTGTGCCTCTCTTCTGAATCGTTAATGTTGGTTTCAGTACAGGTATGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019991.8 |
||
| CDS-3UTR CCA 90 bp | TGTATGAGCGCTGACAGAGAGGACACAGCTTCCGTAAAAGTGCTTTCCTCCATCAAACCGGTACACTTCTaGGAATTCATCTTCAAGAAC | + |
|
Preference number: 4 (lower is better) Translates to: CMSADREDTASVKVLSSIKPVHF*EFIFKN Trigger: GTTCTTGAAGATGAATTCCCAGAAGTGTACCGGTTT...GATGGAGGAAAGCACTTTTACGGAAGCTGTGTCCTCTCTGTCAGCGCTCATACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
||
| CDS-3UTR CCA 90 bp | AAACATACCTGTACTGAAACCAACATTAACGATTCAGAAGAGAGGCACAGTGGCCAAACCTCGCAGAGTTaGTTGTCAATGGGCAGCACA | + |
|
Preference number: 4 (lower is better) Translates to: KHTCTETNINDSEERHSGQTSQS*LSMGST Trigger: TGTGCTGCCCATTGACAACCAACTCTGCGAGGTTTG...GCCACTGTGCCTCTCTTCTGAATCGTTAATGTTGGTTTCAGTACAGGTATGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
||
| 3UTR CAA 72 bp | AGCTTCCGTAAAAGTGCTTTCCTCCATCCCATCAACTaGCAGGTAGTGATGGAGGTGAGCCTTTTTCTTGTA | + |
|
Preference number: 4 (lower is better) Translates to: SFRKSAFLHPIN*QVVMEVSLFLV Trigger: TACAAGAAAAAGGCTCACCTCCATCACTACCTGCAAGTTGATGGGATGGAGGAAAGCACTTTTACGGAAGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
||
| 3UTR CAA 72 bp | TTAACCAAGCACAGGTCTAAGAAAATATCAGCCACTTaGAGACATGTGCTGCCTGATGGCAGGCAGTATGGT | + |
|
Preference number: 4 (lower is better) Translates to: LTKHRSKKISAT*RHVLPDGRQYG Trigger: ACCATACTGCCTGCCATCAGGCAGCACATGTCTCAAAGTGGCTGATATTTTCTTAGACCTGTGCTTGGTTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
||
| CDS-3UTR GCA 90 bp | AAACATACCTGTACTGAAACCAACATTAACGATTCAGAAGAGAGGCACAGTGGCAAGGGCTTCTTGTGGTaGTTTTTAACAGCCCCCATG | + |
|
Preference number: 4 (lower is better) Translates to: KHTCTETNINDSEERHSGKGFLW*FLTAPM Trigger: CATGGGGGCTGTTAAAAAGCACCACAAGAAGCCCTT...GCCACTGTGCCTCTCTTCTGAATCGTTAATGTTGGTTTCAGTACAGGTATGTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000019991.8 |
||
| CDS-3UTR GCA 90 bp | TACACTTGTGTAACACCATGTTGGGTTCTCTCTCATCTCAATTTTGGCAAACTGTTCCTTTGGAAATACTaGCACCATCCCCAACAGCTC | + |
|
Preference number: 4 (lower is better) Translates to: YTCVTPCWVLSHLNFGKLFLWKY*HHPQQL Trigger: GAGCTGTTGGGGATGGTGGCAGTATTTCCAAAGGAA...CAGTTTGCCAAAATTGAGATGAGAGAGAACCCAACATGGTGTTACACAAGTGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019991.8 ENSMUST00000213459.2 |
||
| CDS-3UTR CCA 90 bp | TTACTAAGATGGTATTATAAATGCATCTATAATCACCATCGCCCTGTCCTGAATCAACCTGGGCACATCTaGCACAGGCAGGCTCTTTGT | + |
|
Preference number: 4 (lower is better) Translates to: LLRWYYKCIYNHHRPVLNQPGHI*HRQALC Trigger: ACAAAGAGCCTGCCTGTGCCAGATGTGCCCAGGTTG...ATTCAGGACAGGGCGATGGTGATTATAGATGCATTTATAATACCATCTTAGTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019991.8 |
||
| CDS-3UTR CCA 90 bp | GCTTTTAAACCGTTTATTATAAAAAGGGACTGGATGCCAAGTTGTGATTCTTTGCCTCCGCCCATGGAGTaGATGATGAAGAAGCACTGT | + |
|
Preference number: 4 (lower is better) Translates to: AFKPFIIKRDWMPSCDSLPPPME*MMKKHC Trigger: ACAGTGCTTCTTCATCATCCACTCCATGGGCGGAGG...CAAAGAATCACAACTTGGCATCCAGTCCCTTTTTATAATAAACGGTTTAAAAGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000019991.8 ENSMUST00000213459.2 |
||
| CDS-3UTR CCA 90 bp | TTACTAAGATGGTATTATAAATGCATCTATAATCACCATCGCCCTGTCCTGAATAACAGAGAATGCGAGTaGCCCACAGGCGGTACAGAA | + |
|
Preference number: 4 (lower is better) Translates to: LLRWYYKCIYNHHRPVLNNRECE*PTGGTE Trigger: TTCTGTACCGCCTGTGGGCCACTCGCATTCTCTGTT...ATTCAGGACAGGGCGATGGTGATTATAGATGCATTTATAATACCATCTTAGTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019991.8 |
||
| CDS-3UTR CCA 90 bp | AAACATACCTGTACTGAAACCAACATTAACGATTCAGAAGAGAGGCACAGTGGCAAACCGGTACACTTCTaGGAATTCATCTTCAAGAAC | + |
|
Preference number: 4 (lower is better) Translates to: KHTCTETNINDSEERHSGKPVHF*EFIFKN Trigger: GTTCTTGAAGATGAATTCCCAGAAGTGTACCGGTTT...GCCACTGTGCCTCTCTTCTGAATCGTTAATGTTGGTTTCAGTACAGGTATGTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019991.8 ENSMUST00000213459.2 |
||
| CDS-3UTR CCA 90 bp | ACATGCTCAACCGCCGTAGCAGCCGTTTACACATTTGCTTTTAAACCGTTTATTCATTCAGTTCCTTCATaGCCAGCATACTGTTATAAG | + |
|
Preference number: 4 (lower is better) Translates to: TCSTAVAAVYTFAFKPFIHSVPS*PAYCYK Trigger: CTTATAACAGTATGCTGGCCATGAAGGAACTGAATG...AATAAACGGTTTAAAAGCAAATGTGTAAACGGCTGCTACGGCGGTTGAGCATGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019991.8 ENSMUST00000213459.2 |
||
| CDS-3UTR GCA 90 bp | AAATTACTAAGATGGTATTATAAATGCATCTATAATCACCATCGCCCTGTCCTGCCTTTAACAGAAATGTaGCAAGCCCAGAGCCTGTTC | + |
|
Preference number: 4 (lower is better) Translates to: KLLRWYYKCIYNHHRPVLPLTEM*QAQSLF Trigger: GAACAGGCTCTGGGCTTGGCACATTTCTGTTAAAGG...CAGGACAGGGCGATGGTGATTATAGATGCATTTATAATACCATCTTAGTAATTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019991.8 ENSMUST00000213459.2 |
||
| CDS-3UTR CCA 90 bp | GCTTTTAAACCGTTTATTATAAAAAGGGACTGGATGCCAAGTTGTGATTCTTTGGTACAGAACACAGGCTaGTCTTCCAGCCTTCTTGAT | + |
|
Preference number: 4 (lower is better) Translates to: AFKPFIIKRDWMPSCDSLVQNTG*SSSLLD Trigger: ATCAAGAAGGCTGGAAGACCAGCCTGTGTTCTGTAC...CAAAGAATCACAACTTGGCATCCAGTCCCTTTTTATAATAAACGGTTTAAAAGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019991.8 |
||
| CDS-3UTR CCA 90 bp | TACACTTGTGTAACACCATGTTGGGTTCTCTCTCATCTCAATTTTGGCAAACTGATGTCAAATAAAGATTaGTTGTCAATGGGCAGCACA | + |
|
Preference number: 4 (lower is better) Translates to: YTCVTPCWVLSHLNFGKLMSNKD*LSMGST Trigger: TGTGCTGCCCATTGACAACCAATCTTTATTTGACAT...CAGTTTGCCAAAATTGAGATGAGAGAGAACCCAACATGGTGTTACACAAGTGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019991.8 |
||
| CDS-3UTR TCA 90 bp | AAATTACTAAGATGGTATTATAAATGCATCTATAATCACCATCGCCCTGTCCTGGAACCAAGTTCATGCTaGTCTCATTCAGGTCCATAT | + |
|
Preference number: 4 (lower is better) Translates to: KLLRWYYKCIYNHHRPVLEPSSC*SHSGPY Trigger: ATATGGACCTGAATGAGATCAGCATGAACTTGGTTC...CAGGACAGGGCGATGGTGATTATAGATGCATTTATAATACCATCTTAGTAATTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019991.8 |
||
| CDS-3UTR TCA 90 bp | TTACTAAGATGGTATTATAAATGCATCTATAATCACCATCGCCCTGTCCTGAATCATCCAAAAACTTTGTaGCCCACAGCCCAATTATTT | + |
|
Preference number: 4 (lower is better) Translates to: LLRWYYKCIYNHHRPVLNHPKTL*PTAQLF Trigger: AAATAATTGGGCTGTGGGTCACAAAGTTTTTGGATG...ATTCAGGACAGGGCGATGGTGATTATAGATGCATTTATAATACCATCTTAGTAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019991.8 ENSMUST00000213459.2 |
||
| CDS-3UTR CAA 90 bp | TGTGCACACAGCACATGCATTCATCTATCCACCACCCAGCCCAAACTGTGTGACTCAAACCTCGCAGAGTaGGTTGTCAATGGGCAGCAC | + |
|
Preference number: 5 (lower is better) Translates to: CAHSTCIHLSTTQPKLCDSNLAE*VVNGQH Trigger: GTGCTGCCCATTGACAACCAACTCTGCGAGGTTTGA...GTCACACAGTTTGGGCTGGGTGGTGGATAGATGAATGCATGTGCTGTGTGCACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
||
| CDS GCA 90 bp | AGGTTCGCCACAATGTTGTTCATGGCGTCGAAGGGCTTCTTGTGGTaGTTTTTAACAGCCCCCATGTTCGACGTAATGAGACTCTTAGGC | + |
|
Preference number: 5 (lower is better) Translates to: RFATMLFMASKGFLW*FLTAPMFDVMRLLG Trigger: GCCTAAGAGTCTCATTACGTCGAACATGGGGGCTGTTAAAAAGCACCACAAGAAGCCCTTCGACGCCATGAACAACATTGTGGCGAACCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000019991.8 |
||
| CDS-3UTR CAA 90 bp | TACACTTGTGTAACACCATGTTGGGTTCTCTCTCATCTCAATTTTGGCAAACTGACCTCGCAGAGTTGGTaGTCAATGGGCAGCACACAG | + |
|
Preference number: 5 (lower is better) Translates to: YTCVTPCWVLSHLNFGKLTSQSW*SMGSTQ Trigger: CTGTGTGCTGCCCATTGACAACCAACTCTGCGAGGT...CAGTTTGCCAAAATTGAGATGAGAGAGAACCCAACATGGTGTTACACAAGTGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213459.2 |
||
| CDS-3UTR CAA 90 bp | TTACTAAGATGGTATTATAAATGCATCTATAATCACCATCGCCCTGTCCTGAATATGTCTGGGGTCTGCTaGGATGAGCTGGTGATCCTT | + |
|
Preference number: 5 (lower is better) Translates to: LLRWYYKCIYNHHRPVLNMSGVC*DELVIL Trigger: AAGGATCACCAGCTCATCCAAGCAGACCCCAGACAT...ATTCAGGACAGGGCGATGGTGATTATAGATGCATTTATAATACCATCTTAGTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019991.8 |
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| CDS-3UTR CAA 90 bp | TTACTAAGATGGTATTATAAATGCATCTATAATCACCATCGCCCTGTCCTGAATTCATTCAGGTCCATATaGAGGGAGCCCTCAAACCTC | + |
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Preference number: 5 (lower is better) Translates to: LLRWYYKCIYNHHRPVLNSFRSI*REPSNL Trigger: GAGGTTTGAGGGCTCCCTCAATATGGACCTGAATGA...ATTCAGGACAGGGCGATGGTGATTATAGATGCATTTATAATACCATCTTAGTAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019991.8 |
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| CDS CAA 72 bp | GAGCTTGTCAGGCTGAGGAGCAGGTTCGCCACAATGTaGTTCATGGCGTCGAAGGGCTTCTTGTGGTGCTTT | + |
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Preference number: 6 (lower is better) Translates to: ELVRLRSRFATM*FMASKGFLWCF Trigger: AAAGCACCACAAGAAGCCCTTCGACGCCATGAACAACATTGTGGCGAACCTGCTCCTCAGCCTGACAAGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019991.8 |
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| CDS CAA 90 bp | AACCTCGCAGAGCTTGTCAGGCTGAGGAGCAGGTTCGCCACAATGTaGTTCATGGCGTCGAAGGGCTTCTTGTGGTGCTTTTTAACAGCC | + |
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Preference number: 6 (lower is better) Translates to: NLAELVRLRSRFATM*FMASKGFLWCFLTA Trigger: GGCTGTTAAAAAGCACCACAAGAAGCCCTTCGACGCCATGAACAACATTGTGGCGAACCTGCTCCTCAGCCTGACAAGCTCTGCGAGGTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019991.8 |
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| CDS GCA 72 bp | CTGGGAATTCATCTTCAAGAACCTTTAACAGAAATGTaGCAAGCCCAGAGCCTGTTCCTCCGCCCATGGAGT | + |
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Preference number: 6 (lower is better) Translates to: LGIHLQEPLTEM*QAQSLFLRPWS Trigger: ACTCCATGGGCGGAGGAACAGGCTCTGGGCTTGGCACATTTCTGTTAAAGGTTCTTGAAGATGAATTCCCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019991.8 ENSMUST00000213459.2 |
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| CDS CAA 72 bp | TTCGCCACAATGTTGTTCATGGCGTCGAAGGGCTTCTaGTGGTGCTTTTTAACAGCCCCCATGTTCGACGTA | + |
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Preference number: 6 (lower is better) Translates to: FATMLFMASKGF*WCFLTAPMFDV Trigger: TACGTCGAACATGGGGGCTGTTAAAAAGCACCACAAGAAGCCCTTCGACGCCATGAACAACATTGTGGCGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000019991.8 |
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| CDS GCA 72 bp | ACAATGTTGTTCATGGCGTCGAAGGGCTTCTTGTGGTaGTTTTTAACAGCCCCCATGTTCGACGTAATGAGA | + |
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Preference number: 6 (lower is better) Translates to: TMLFMASKGFLW*FLTAPMFDVMR Trigger: TCTCATTACGTCGAACATGGGGGCTGTTAAAAAGCACCACAAGAAGCCCTTCGACGCCATGAACAACATTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000019991.8 |
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| CDS GCA 72 bp | GTGCTTTTAGAGAAGATATTCTTCCTTTGGAAATACTaGCACCATCCCCAACAGCTCTGGTATCCACATTCC | + |
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Preference number: 6 (lower is better) Translates to: VLLEKIFFLWKY*HHPQQLWYPHS Trigger: GGAATGTGGATACCAGAGCTGTTGGGGATGGTGGCAGTATTTCCAAAGGAAGAATATCTTCTCTAAAAGCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019991.8 ENSMUST00000213459.2 |
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