Pregenerated sensors for TUBB6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001473Ensembl transcript IDs: ENSMUST00000001513.8
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTGAGCCCCCTACTTTGCTTTCAGGGTTCCTATATGAGATCTCCCTaGTCTGCTGGGACTGTTCCAGGTAACCTGGAGAACAGTGTGGTG | + |
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Preference number: 1 (lower is better) Translates to: VSPLLCFQGSYMRSP*SAGTVPGNLENSVV Trigger: CACCACACTGTTCTCCAGGTTACCTGGAACAGTCCCAGCAGACCAGGGAGATCTCATATAGGAACCCTGAAAGCAAAGTAGGGGGCTCAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001513.8 |
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| 3UTR-3UTR CCA 90 bp | TCACTTTCTTTAGCCCTGTGTGAGCCCCCTACTTTGCTTTCAGGGTTCCTATATCTGTTCCAGGTAACCTaGAGAACAGTGTGGTGCATT | + |
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Preference number: 2 (lower is better) Translates to: SLSLALCEPPTLLSGFLYLFQVT*RTVWCI Trigger: AATGCACCACACTGTTCTCCAGGTTACCTGGAACAG...ATATAGGAACCCTGAAAGCAAAGTAGGGGGCTCACACAGGGCTAAAGAAAGTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001513.8 |
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| 3UTR-3UTR GCA 90 bp | CACTTAAGGCAGCACTGTGTGGCTTTAGTTTTTATCACCGAGGATGAAAAACAAGTGAGCCCCCTACTTTaGTTTCAGGGTTCCTATATG | + |
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Preference number: 2 (lower is better) Translates to: HLRQHCVALVFITEDEKQVSPLL*FQGSYM Trigger: CATATAGGAACCCTGAAAGCAAAGTAGGGGGCTCAC...TTGTTTTTCATCCTCGGTGATAAAAACTAAAGCCACACAGTGCTGCCTTAAGTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000001513.8 |
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| 3UTR CCA 72 bp | CTACTTTGCTTTCAGGGTTCCTATATGAGATCTCCCTaGTCTGCTGGGACTGTTCCAGGTAACCTGGAGAAC | + |
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Preference number: 3 (lower is better) Translates to: LLCFQGSYMRSP*SAGTVPGNLEN Trigger: GTTCTCCAGGTTACCTGGAACAGTCCCAGCAGACCAGGGAGATCTCATATAGGAACCCTGAAAGCAAAGTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001513.8 |
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| 3UTR-3UTR CAA 90 bp | TCACTTTCTTTAGCCCTGTGTGAGCCCCCTACTTTGCTTTCAGGGTTCCTATATTGTGGTGCATTTGGTTaGAGAGGGGCCAGTGACATG | + |
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Preference number: 3 (lower is better) Translates to: SLSLALCEPPTLLSGFLYCGAFG*RGASDM Trigger: CATGTCACTGGCCCCTCTCAAACCAAATGCACCACA...ATATAGGAACCCTGAAAGCAAAGTAGGGGGCTCACACAGGGCTAAAGAAAGTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001513.8 |
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| CDS-3UTR TCA 90 bp | TTTGGTTTGAGAGGGGCCAGTGACATGCTTAGACCAGGGCACCATTCCCACACCAGGGCACGGTACTGCTaGCTGCCCCGGGCTGTGAGG | + |
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Preference number: 4 (lower is better) Translates to: FGLRGASDMLRPGHHSHTRARYC*LPRAVR Trigger: CCTCACAGCCCGGGGCAGTCAGCAGTACCGTGCCCT...GGTGTGGGAATGGTGCCCTGGTCTAAGCATGTCACTGGCCCCTCTCAAACCAAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001513.8 |
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| CDS-3UTR GCA 90 bp | TTTGGTTTGAGAGGGGCCAGTGACATGCTTAGACCAGGGCACCATTCCCACACCTCAGGCCGGAAGAGTTaGCCAAAAGGCCCAGACCTC | + |
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Preference number: 4 (lower is better) Translates to: FGLRGASDMLRPGHHSHTSGRKS*PKGPDL Trigger: GAGGTCTGGGCCTTTTGGGCAACTCTTCCGGCCTGA...GGTGTGGGAATGGTGCCCTGGTCTAAGCATGTCACTGGCCCCTCTCAAACCAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001513.8 |
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| CDS-3UTR TCA 90 bp | AGGTGGTCACTTTCTTTAGCCCTGTGTGAGCCCCCTACTTTGCTTTCAGGGTTCAACGCAGTGATGTGGTaGCACCGCTCATGGTGGCGG | + |
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Preference number: 4 (lower is better) Translates to: RWSLSLALCEPPTLLSGFNAVMW*HRSWWR Trigger: CCGCCACCATGAGCGGTGTCACCACATCACTGCGTT...GAACCCTGAAAGCAAAGTAGGGGGCTCACACAGGGCTAAAGAAAGTGACCACCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001513.8 |
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| CDS-3UTR TCA 90 bp | AGATCTCCCTGGTCTGCTGGGACTGTTCCAGGTAACCTGGAGAACAGTGTGGTGCGCACACAGCTACCTTaGCATTGTTGGGGATCCACT | + |
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Preference number: 4 (lower is better) Translates to: RSPWSAGTVPGNLENSVVRTQLP*HCWGST Trigger: AGTGGATCCCCAACAATGTCAAGGTAGCTGTGTGCG...CACCACACTGTTCTCCAGGTTACCTGGAACAGTCCCAGCAGACCAGGGAGATCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001513.8 |
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| CDS-3UTR TCA 90 bp | GGGCACCATTCCCACACCATCAAGGCTAAGAAAAGAGCAGACGTTCACTGTAGCCCTCTTCCCCATCATTaGCCGTGGCGTCCTGGTACT | + |
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Preference number: 4 (lower is better) Translates to: GHHSHTIKAKKRADVHCSPLPHH*PWRPGT Trigger: AGTACCAGGACGCCACGGTCAATGATGGGGAAGAGG...GCTACAGTGAACGTCTGCTCTTTTCTTAGCCTTGATGGTGTGGGAATGGTGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001513.8 |
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| CDS-3UTR TCA 90 bp | CACTTAAGGCAGCACTGTGTGGCTTTAGTTTTTATCACCGAGGATGAAAAACAACTCCAGCTGCAGCGCTaGGTCGCCCACGTAGCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: HLRQHCVALVFITEDEKQLQLQR*VAHVAS Trigger: GGAGGCTACGTGGGCGACTCAGCGCTGCAGCTGGAG...TTGTTTTTCATCCTCGGTGATAAAAACTAAAGCCACACAGTGCTGCCTTAAGTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000001513.8 |
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| CDS-3UTR GCA 90 bp | ACTTTGCTTTCAGGGTTCCTATATGAGATCTCCCTGGTCTGCTGGGACTGTTCCAATGCTCACACTCCTTaGGCACCACATCCAGCACCG | + |
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Preference number: 4 (lower is better) Translates to: TLLSGFLYEISLVCWDCSNAHTP*APHPAP Trigger: CGGTGCTGGATGTGGTGCGCAAGGAGTGTGAGCATT...GGAACAGTCCCAGCAGACCAGGGAGATCTCATATAGGAACCCTGAAAGCAAAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001513.8 |
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| CDS-3UTR GCA 90 bp | GGGCACCATTCCCACACCATCAAGGCTAAGAAAAGAGCAGACGTTCACTGTAGCTTCTCTACCAGCTGGTaGACTGACAATGTGGCGTTG | + |
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Preference number: 4 (lower is better) Translates to: GHHSHTIKAKKRADVHCSFSTSW*TDNVAL Trigger: CAACGCCACATTGTCAGTGCACCAGCTGGTAGAGAA...GCTACAGTGAACGTCTGCTCTTTTCTTAGCCTTGATGGTGTGGGAATGGTGCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001513.8 |
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| CDS-3UTR CCA 90 bp | GCCAGTGACATGCTTAGACCAGGGCACCATTCCCACACCATCAAGGCTAAGAAATCACTTCCCAAAACTTaGTACCGATCTGGTTCCCGC | + |
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Preference number: 4 (lower is better) Translates to: ASDMLRPGHHSHTIKAKKSLPKT*YRSGSR Trigger: GCGGGAACCAGATCGGTACCAAGTTTTGGGAAGTGA...TTTCTTAGCCTTGATGGTGTGGGAATGGTGCCCTGGTCTAAGCATGTCACTGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001513.8 |
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| 3UTR CAA 72 bp | TGGTCACTTTCTTTAGCCCTGTGTGAGCCCCCTACTTaGCTTTCAGGGTTCCTATATGAGATCTCCCTGGTC | + |
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Preference number: 4 (lower is better) Translates to: WSLSLALCEPPT*LSGFLYEISLV Trigger: GACCAGGGAGATCTCATATAGGAACCCTGAAAGCAAAGTAGGGGGCTCACACAGGGCTAAAGAAAGTGACCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001513.8 |
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| CDS-3UTR GCA 90 bp | GCCAGTGACATGCTTAGACCAGGGCACCATTCCCACACCATCAAGGCTAAGAAAATCCTCGTCTTCAAATaGCTCTTCCCCATCATTGAC | + |
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Preference number: 4 (lower is better) Translates to: ASDMLRPGHHSHTIKAKKILVFK*LFPIID Trigger: GTCAATGATGGGGAAGAGGCATTTGAAGACGAGGAT...TTTCTTAGCCTTGATGGTGTGGGAATGGTGCCCTGGTCTAAGCATGTCACTGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001513.8 |
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| CDS-3UTR CCA 90 bp | CACTTAAGGCAGCACTGTGTGGCTTTAGTTTTTATCACCGAGGATGAAAAACAAGTGTTCTCTACCAGCTaGTGCACTGACAATGTGGCG | + |
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Preference number: 4 (lower is better) Translates to: HLRQHCVALVFITEDEKQVFSTS*CTDNVA Trigger: CGCCACATTGTCAGTGCACCAGCTGGTAGAGAACAC...TTGTTTTTCATCCTCGGTGATAAAAACTAAAGCCACACAGTGCTGCCTTAAGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000001513.8 |
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| CDS-3UTR CAA 90 bp | GTGGGAAGGGGGCTTAACAAAAGGTGGTCACTTTCTTTAGCCCTGTGTGAGCCCGTCAGGCCGGAAGAGTaGCCCAAAAGGCCCAGACCT | + |
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Preference number: 5 (lower is better) Translates to: VGRGLNKRWSLSLALCEPVRPEE*PKRPRP Trigger: AGGTCTGGGCCTTTTGGGCAACTCTTCCGGCCTGAC...GGGCTCACACAGGGCTAAAGAAAGTGACCACCTTTTGTTAAGCCCCCTTCCCAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001513.8 |
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| CDS-3UTR CAA 90 bp | GTGGGAAGGGGGCTTAACAAAAGGTGGTCACTTTCTTTAGCCCTGTGTGAGCCCCAATGCTCACACTCCTaGCGCACCACATCCAGCACC | + |
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Preference number: 5 (lower is better) Translates to: VGRGLNKRWSLSLALCEPQCSHS*RTTSST Trigger: GGTGCTGGATGTGGTGCGCAAGGAGTGTGAGCATTG...GGGCTCACACAGGGCTAAAGAAAGTGACCACCTTTTGTTAAGCCCCCTTCCCAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001513.8 |
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| CDS-3UTR CAA 90 bp | CCCTGGTCTGCTGGGACTGTTCCAGGTAACCTGGAGAACAGTGTGGTGCATTTGATCACTTCCCAAAACTaGGTACCGATCTGGTTCCCG | + |
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Preference number: 5 (lower is better) Translates to: PWSAGTVPGNLENSVVHLITSQN*VPIWFP Trigger: CGGGAACCAGATCGGTACCAAGTTTTGGGAAGTGAT...CAAATGCACCACACTGTTCTCCAGGTTACCTGGAACAGTCCCAGCAGACCAGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001513.8 |
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| CDS GCA 72 bp | CTATTCGTTGATCTCTTCTTCATCCTCGTCTTCAAATaGCTCTTCCCCATCATTGACCGTGGCGTCCTGGTA | + |
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Preference number: 6 (lower is better) Translates to: LFVDLFFILVFK*LFPIIDRGVLV Trigger: TACCAGGACGCCACGGTCAATGATGGGGAAGAGGCATTTGAAGACGAGGATGAAGAAGAGATCAACGAATAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001513.8 |
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