RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TUBB5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000001525

Ensembl transcript IDs: ENSMUST00000001566.10

Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GAGGAGCATGGGGCAGAGGTGGTGACAGCCCATCTGGGCAGTGTCTaGAAGACCCAGGTGGAAACATACTTTCCCAAGTGTGGAGTTTCA +
Preference number: 1 (lower is better)
Translates to: EEHGAEVVTAHLGSV*KTQVETYFPKCGVS
Trigger: TGAAACTCCACACTTGGGAAAGTATGTTTCCACCTGGGTCTTTCAGACACTGCCCAGATGGGCTGTCACCACCTCTGCCCCATGCTCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001566.10
3UTR CCA 90 bp GGGCAGTGTCTGAAAGACCCAGGTGGAAACATACTTTCCCAAGTGTaGAGTTTCAGCGGGAATTGGGAGTGTTCAGAGACCAAGACCAAG +
Preference number: 1 (lower is better)
Translates to: GQCLKDPGGNILSQV*SFSGNWECSETKTK
Trigger: CTTGGTCTTGGTCTCTGAACACTCCCAATTCCCGCTGAAACTCCACACTTGGGAAAGTATGTTTCCACCTGGGTCTTTCAGACACTGCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001566.10
3UTR-3UTR TCA 90 bp CAACCCCCATCTCTCCGAGAAAGGAGAACCAATACAGGGAAGACACTTCCAATGAGGCAGGCGGATTTCTaGGTTCCAGGACAGCCTGGG +
Preference number: 2 (lower is better)
Translates to: QPPSLRERRTNTGKTLPMRQADF*VPGQPG
Trigger: CCCAGGCTGTCCTGGAACTCAGAAATCCGCCTGCCT...CATTGGAAGTGTCTTCCCTGTATTGGTTCTCCTTTCTCGGAGAGATGGGGGTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001566.10
3UTR-3UTR CCA 90 bp CCCAAGTGTGGAGTTTCAGCGGGAATTGGGAGTGTTCAGAGACCAAGACCAAGAACCCCCTTCTCTTCCTaGTGGTCTCTACCTAGCATC +
Preference number: 2 (lower is better)
Translates to: PKCGVSAGIGSVQRPRPRTPFSS*WSLPSI
Trigger: GATGCTAGGTAGAGACCACCAGGAAGAGAAGGGGGT...TCTTGGTCTTGGTCTCTGAACACTCCCAATTCCCGCTGAAACTCCACACTTGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001566.10
3UTR-3UTR GCA 90 bp GACCAAGACCAAGACCTTGCCGCACCCCCAACCCCCATCTCTCCGAGAAAGGAGCCTGATCCACTACTTTaGTTTAAGATGATGGTTACT +
Preference number: 2 (lower is better)
Translates to: DQDQDLAAPPTPISPRKEPDPLL*FKMMVT
Trigger: AGTAACCATCATCTTAAAGCAAAGTAGTGGATCAGG...CTCCTTTCTCGGAGAGATGGGGGTTGGGGGTGCGGCAAGGTCTTGGTCTTGGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000001566.10
3UTR-3UTR TCA 90 bp CCCAAGTGTGGAGTTTCAGCGGGAATTGGGAGTGTTCAGAGACCAAGACCAAGACCTGAGGCTGAGAGATaGGGCAGGAGAAAAACAAAA +
Preference number: 2 (lower is better)
Translates to: PKCGVSAGIGSVQRPRPRPEAER*GRRKTK
Trigger: TTTTGTTTTTCTCCTGCCTCATCTCTCAGCCTCAGG...TCTTGGTCTTGGTCTCTGAACACTCCCAATTCCCGCTGAAACTCCACACTTGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001566.10
3UTR-3UTR CCA 90 bp CAGAGACCAAGACCAAGACCTTGCCGCACCCCCAACCCCCATCTCTCCGAGAAATTCTGGAGAATATTCTaGAATATTAACTGGACAGTC +
Preference number: 2 (lower is better)
Translates to: QRPRPRPCRTPNPHLSEKFWRIF*NINWTV
Trigger: GACTGTCCAGTTAATATTCCAGAATATTCTCCAGAA...TTTCTCGGAGAGATGGGGGTTGGGGGTGCGGCAAGGTCTTGGTCTTGGTCTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000001566.10
3UTR-3UTR CCA 90 bp CAACCCCCATCTCTCCGAGAAAGGAGAACCAATACAGGGAAGACACTTCCAATGAAAATGGATACTTGTTaGGTGATAGTGGCACACGCC +
Preference number: 2 (lower is better)
Translates to: QPPSLRERRTNTGKTLPMKMDTC*VIVAHA
Trigger: GGCGTGTGCCACTATCACCCAACAAGTATCCATTTT...CATTGGAAGTGTCTTCCCTGTATTGGTTCTCCTTTCTCGGAGAGATGGGGGTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001566.10
3UTR CAA 90 bp CGAGAAAGGAGAACCAATACAGGGAAGACACTTCCAATGGCAGATTaGGCTCAGGACAGCTGGGAGGATATAAATGGAGATAATACTGTT +
Preference number: 2 (lower is better)
Translates to: RERRTNTGKTLPMAD*AQDSWEDINGDNTV
Trigger: AACAGTATTATCTCCATTTATATCCTCCCAGCTGTCCTGAGCCAAATCTGCCATTGGAAGTGTCTTCCCTGTATTGGTTCTCCTTTCTCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001566.10
3UTR-3UTR CCA 90 bp AAAGACCCAGGTGGAAACATACTTTCCCAAGTGTGGAGTTTCAGCGGGAATTGGCAGACCTCAGGTTTCTaGAGAATATTCTGGAATATT +
Preference number: 2 (lower is better)
Translates to: KDPGGNILSQVWSFSGNWQTSGF*RIFWNI
Trigger: AATATTCCAGAATATTCTCCAGAAACCTGAGGTCTG...CCAATTCCCGCTGAAACTCCACACTTGGGAAAGTATGTTTCCACCTGGGTCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001566.10
3UTR-3UTR CCA 90 bp CCTGATCCACTACTTTGCTTTAAGATGATGGTTACTATCCGAGTTCTTAGAATTGCAGCAGAAAGAAACTaGAGGACAAAGGGCAGTTGG +
Preference number: 2 (lower is better)
Translates to: PDPLLCFKMMVTIRVLRIAAERN*RTKGSW
Trigger: CCAACTGCCCTTTGTCCTCCAGTTTCTTTCTGCTGC...AATTCTAAGAACTCGGATAGTAACCATCATCTTAAAGCAAAGTAGTGGATCAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001566.10
3UTR-3UTR CCA 90 bp AGCATCCCTGATCCACTACTTTGCTTTAAGATGATGGTTACTATCCGAGTTCTTCTAAGTTTGTCAGAGTaGAAAGAGAAAGGAGACATT +
Preference number: 2 (lower is better)
Translates to: SIPDPLLCFKMMVTIRVLLSLSE*KEKGDI
Trigger: AATGTCTCCTTTCTCTTTCCACTCTGACAAACTTAG...AAGAACTCGGATAGTAACCATCATCTTAAAGCAAAGTAGTGGATCAGGGATGCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001566.10
3UTR-3UTR CAA 90 bp GACCAAGACCAAGACCTTGCCGCACCCCCAACCCCCATCTCTCCGAGAAAGGAGCTTCCAATGGCAGATTaGGCTCAGGACAGCTGGGAG +
Preference number: 3 (lower is better)
Translates to: DQDQDLAAPPTPISPRKELPMAD*AQDSWE
Trigger: CTCCCAGCTGTCCTGAGCCAAATCTGCCATTGGAAG...CTCCTTTCTCGGAGAGATGGGGGTTGGGGGTGCGGCAAGGTCTTGGTCTTGGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000001566.10
3UTR-3UTR CAA 90 bp ATTGGGAGTGTTCAGAGACCAAGACCAAGACCTTGCCGCACCCCCAACCCCCATGAGGACAAAGGGCAGTaGGAGAAAGCTGAGGGATCT +
Preference number: 3 (lower is better)
Translates to: IGSVQRPRPRPCRTPNPHEDKGQ*EKAEGS
Trigger: AGATCCCTCAGCTTTCTCCAACTGCCCTTTGTCCTC...ATGGGGGTTGGGGGTGCGGCAAGGTCTTGGTCTTGGTCTCTGAACACTCCCAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000001566.10
3UTR-3UTR CAA 90 bp GGTGGAAACATACTTTCCCAAGTGTGGAGTTTCAGCGGGAATTGGGAGTGTTCAACCAAGACCAAGACCTaGCCGCACCCCCAACCCCCA +
Preference number: 3 (lower is better)
Translates to: GGNILSQVWSFSGNWECSTKTKT*PHPQPP
Trigger: TGGGGGTTGGGGGTGCGGCAAGGTCTTGGTCTTGGT...TGAACACTCCCAATTCCCGCTGAAACTCCACACTTGGGAAAGTATGTTTCCACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000001566.10
3UTR CCA 72 bp AACATACTTTCCCAAGTGTGGAGTTTCAGCGGGAATTaGGAGTGTTCAGAGACCAAGACCAAGACCTTGCCG +
Preference number: 3 (lower is better)
Translates to: NILSQVWSFSGN*ECSETKTKTLP
Trigger: CGGCAAGGTCTTGGTCTTGGTCTCTGAACACTCCCAATTCCCGCTGAAACTCCACACTTGGGAAAGTATGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001566.10
3UTR CCA 72 bp CTGAAAGACCCAGGTGGAAACATACTTTCCCAAGTGTaGAGTTTCAGCGGGAATTGGGAGTGTTCAGAGACC +
Preference number: 3 (lower is better)
Translates to: LKDPGGNILSQV*SFSGNWECSET
Trigger: GGTCTCTGAACACTCCCAATTCCCGCTGAAACTCCACACTTGGGAAAGTATGTTTCCACCTGGGTCTTTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001566.10
3UTR GCA 72 bp TGGTGGTCTCTACCTAGCATCCCTGATCCACTACTTTaGTTTAAGATGATGGTTACTATCCGAGTTCTTAGA +
Preference number: 3 (lower is better)
Translates to: WWSLPSIPDPLL*FKMMVTIRVLR
Trigger: TCTAAGAACTCGGATAGTAACCATCATCTTAAAGCAAAGTAGTGGATCAGGGATGCTAGGTAGAGACCACCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001566.10
3UTR CCA 72 bp GGTTCTACACAGGATCTGGAGCAGACCTCAGGTTTCTaGAGAATATTCTGGAATATTAACTGGACAGTCAAA +
Preference number: 3 (lower is better)
Translates to: GSTQDLEQTSGF*RIFWNINWTVK
Trigger: TTTGACTGTCCAGTTAATATTCCAGAATATTCTCCAGAAACCTGAGGTCTGCTCCAGATCCTGTGTAGAACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001566.10
CDS-3UTR GCA 90 bp CCCAAGTGTGGAGTTTCAGCGGGAATTGGGAGTGTTCAGAGACCAAGACCAAGACTCGAGGGACATACTTaGCACCTGTGGCTTCATTAT +
Preference number: 4 (lower is better)
Translates to: PKCGVSAGIGSVQRPRPRLEGHT*HLWLHY
Trigger: ATAATGAAGCCACAGGTGGCAAGTATGTCCCTCGAG...TCTTGGTCTTGGTCTCTGAACACTCCCAATTCCCGCTGAAACTCCACACTTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001566.10
3UTR CAA 72 bp AGAACCAATACAGGGAAGACACTTCCAATGGCAGATTaGGCTCAGGACAGCTGGGAGGATATAAATGGAGAT +
Preference number: 4 (lower is better)
Translates to: RTNTGKTLPMAD*AQDSWEDINGD
Trigger: ATCTCCATTTATATCCTCCCAGCTGTCCTGAGCCAAATCTGCCATTGGAAGTGTCTTCCCTGTATTGGTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001566.10