Pregenerated sensors for TUBB4A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062591Ensembl transcript IDs: ENSMUST00000071135.6
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGGCCTCTCTTTTTCCTCGTCCTTCAGCACTTCTCTGGTAGGAACTaGACTAAGGCACAAGGGCAGGAACATACGGGGACTTACGGGAGC | + |
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Preference number: 1 (lower is better) Translates to: RPLFFLVLQHFSGRN*TKAQGQEHTGTYGS Trigger: GCTCCCGTAAGTCCCCGTATGTTCCTGCCCTTGTGCCTTAGTTCAGTTCCTACCAGAGAAGTGCTGAAGGACGAGGAAAAAGAGAGGCCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| 3UTR CCA 90 bp | TCATGGGAACTAGAAGAGCCCTTCCCTGGCAGGTTGGAGAGACAGTaGGGTTTAGGAGTTAAAGGTGAAGCAAATAGAAGCAACCTGGGC | + |
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Preference number: 1 (lower is better) Translates to: SWELEEPFPGRLERQ*GLGVKGEANRSNLG Trigger: GCCCAGGTTGCTTCTATTTGCTTCACCTTTAACTCCTAAACCCCACTGTCTCTCCAACCTGCCAGGGAAGGGCTCTTCTAGTTCCCATGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| 3UTR CCA 90 bp | GAGTGGGTAGCTGTGAGGTCAGAGGTAAGGCAAGGTGAGAGGACTTaGAGGCTGGGGAAAATGTTAAGATCTAGAGAAATATCTGGGCAT | + |
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Preference number: 1 (lower is better) Translates to: EWVAVRSEVRQGERT*RLGKMLRSREISGH Trigger: ATGCCCAGATATTTCTCTAGATCTTAACATTTTCCCCAGCCTCCAAGTCCTCTCACCTTGCCTTACCTCTGACCTCACAGCTACCCACTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| 3UTR CCA 90 bp | TTAAGATCTAGAGAAATATCTGGGCATGTCAGAGGTGGAGGAGAATaGTTCAGGAGTGCTGGGGAAGGGACAGGGCATAAAGGAAAGGAT | + |
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Preference number: 1 (lower is better) Translates to: LRSREISGHVRGGGE*FRSAGEGTGHKGKD Trigger: ATCCTTTCCTTTATGCCCTGTCCCTTCCCCAGCACTCCTGAACCATTCTCCTCCACCTCTGACATGCCCAGATATTTCTCTAGATCTTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| 3UTR-3UTR CCA 90 bp | ACTTACGGGAGCCAGAGTGAAGGTGCTGGGTCAGGAGTGGGTAGCTGTGAGGTCAGAAGAGCCCTTCCCTaGCAGGTTGGAGAGACAGTG | + |
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Preference number: 2 (lower is better) Translates to: TYGSQSEGAGSGVGSCEVRRALP*QVGETV Trigger: CACTGTCTCTCCAACCTGCCAGGGAAGGGCTCTTCT...GACCTCACAGCTACCCACTCCTGACCCAGCACCTTCACTCTGGCTCCCGTAAGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| 3UTR-3UTR TCA 90 bp | TCCTCGTCCTTCAGCACTTCTCTGGTAGGAACTGAACTAAGGCACAAGGGCAGGAGAGGTAAGGCAAGGTaGGAGGACTTGGAGGCTGGG | + |
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Preference number: 2 (lower is better) Translates to: SSSFSTSLVGTELRHKGRRGKAR*EDLEAG Trigger: CCCAGCCTCCAAGTCCTCTCACCTTGCCTTACCTCT...CCTGCCCTTGTGCCTTAGTTCAGTTCCTACCAGAGAAGTGCTGAAGGACGAGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| 3UTR-3UTR CCA 90 bp | ACTTACGGGAGCCAGAGTGAAGGTGCTGGGTCAGGAGTGGGTAGCTGTGAGGTCCAAGGTGAGAGGACTTaGAGGCTGGGGAAAATGTTA | + |
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Preference number: 2 (lower is better) Translates to: TYGSQSEGAGSGVGSCEVQGERT*RLGKML Trigger: TAACATTTTCCCCAGCCTCCAAGTCCTCTCACCTTG...GACCTCACAGCTACCCACTCCTGACCCAGCACCTTCACTCTGGCTCCCGTAAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| 3UTR-3UTR GCA 90 bp | TCCTCGTCCTTCAGCACTTCTCTGGTAGGAACTGAACTAAGGCACAAGGGCAGGAATGAGGCAACTAGGTaGAGGGGTGTGATGCTTAGG | + |
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Preference number: 2 (lower is better) Translates to: SSSFSTSLVGTELRHKGRNEATR*RGVMLR Trigger: CCTAAGCATCACACCCCTGCACCTAGTTGCCTCATT...CCTGCCCTTGTGCCTTAGTTCAGTTCCTACCAGAGAAGTGCTGAAGGACGAGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| 3UTR-3UTR CCA 90 bp | GTGAAGGTGCTGGGTCAGGAGTGGGTAGCTGTGAGGTCAGAGGTAAGGCAAGGTAGGTTGGAGAGACAGTaGGGTTTAGGAGTTAAAGGT | + |
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Preference number: 2 (lower is better) Translates to: VKVLGQEWVAVRSEVRQGRLERQ*GLGVKG Trigger: ACCTTTAACTCCTAAACCCCACTGTCTCTCCAACCT...ACCTTGCCTTACCTCTGACCTCACAGCTACCCACTCCTGACCCAGCACCTTCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| 3UTR-3UTR CCA 90 bp | GCCAGAGTGAAGGTGCTGGGTCAGGAGTGGGTAGCTGTGAGGTCAGAGGTAAGGCAAGATCTAAGAAGGTaGAGTGTGTGTGTGTGTGTA | + |
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Preference number: 2 (lower is better) Translates to: ARVKVLGQEWVAVRSEVRQDLRR*SVCVCV Trigger: TACACACACACACACACTCCACCTTCTTAGATCTTG...CCTTACCTCTGACCTCACAGCTACCCACTCCTGACCCAGCACCTTCACTCTGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| 3UTR-3UTR TCA 90 bp | GTAAGGCAAGGTGAGAGGACTTGGAGGCTGGGGAAAATGTTAAGATCTAGAGAAGCTTGGCCCTCATGGTaGAGATGCTCATGGGGTCCT | + |
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Preference number: 2 (lower is better) Translates to: VRQGERTWRLGKMLRSREAWPSW*RCSWGP Trigger: AGGACCCCATGAGCATCTTCACCATGAGGGCCAAGC...TTCTCTAGATCTTAACATTTTCCCCAGCCTCCAAGTCCTCTCACCTTGCCTTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| 3UTR-3UTR TCA 90 bp | GGGAAAATGTTAAGATCTAGAGAAATATCTGGGCATGTCAGAGGTGGAGGAGAATGTGTGTACATGTGTTaGGGGGCGCTCATGGGAACT | + |
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Preference number: 2 (lower is better) Translates to: GKMLRSREISGHVRGGGECVYMC*GALMGT Trigger: AGTTCCCATGAGCGCCCCTCAACACATGTACACACA...TTCTCCTCCACCTCTGACATGCCCAGATATTTCTCTAGATCTTAACATTTTCCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| 3UTR CCA 72 bp | TGTGTGTGTGTGTGTACATGTGTTGAGGGGCGCTCATaGGAACTAGAAGAGCCCTTCCCTGGCAGGTTGGAG | + |
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Preference number: 3 (lower is better) Translates to: CVCVCTCVEGRS*ELEEPFPGRLE Trigger: CTCCAACCTGCCAGGGAAGGGCTCTTCTAGTTCCCATGAGCGCCCCTCAACACATGTACACACACACACACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| 3UTR TCA 72 bp | GGAGTGGGTAGCTGTGAGGTCAGAGGTAAGGCAAGGTaGGAGGACTTGGAGGCTGGGGAAAATGTTAAGATC | + |
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Preference number: 3 (lower is better) Translates to: GVGSCEVRGKAR*EDLEAGENVKI Trigger: GATCTTAACATTTTCCCCAGCCTCCAAGTCCTCTCACCTTGCCTTACCTCTGACCTCACAGCTACCCACTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| 3UTR-3UTR CAA 90 bp | GTAAGGCAAGGTGAGAGGACTTGGAGGCTGGGGAAAATGTTAAGATCTAGAGAACTTAGGGTCAAAGCTTaGCTGGTGGGCCCCAGGGAC | + |
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Preference number: 3 (lower is better) Translates to: VRQGERTWRLGKMLRSRELRVKA*LVGPRD Trigger: GTCCCTGGGGCCCACCAGCAAAGCTTTGACCCTAAG...TTCTCTAGATCTTAACATTTTCCCCAGCCTCCAAGTCCTCTCACCTTGCCTTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| 3UTR-3UTR CAA 90 bp | CTCTCTTTTTCCTCGTCCTTCAGCACTTCTCTGGTAGGAACTGAACTAAGGCACGTGTGTGTACATGTGTaGAGGGGCGCTCATGGGAAC | + |
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Preference number: 3 (lower is better) Translates to: LSFSSSFSTSLVGTELRHVCVHV*RGAHGN Trigger: GTTCCCATGAGCGCCCCTCAACACATGTACACACAC...GTGCCTTAGTTCAGTTCCTACCAGAGAAGTGCTGAAGGACGAGGAAAAAGAGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| 3UTR TCA 72 bp | TTTTTCCTCGTCCTTCAGCACTTCTCTGGTAGGAACTaGACTAAGGCACAAGGGCAGGAACATACGGGGACT | + |
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Preference number: 3 (lower is better) Translates to: FFLVLQHFSGRN*TKAQGQEHTGT Trigger: AGTCCCCGTATGTTCCTGCCCTTGTGCCTTAGTTCAGTTCCTACCAGAGAAGTGCTGAAGGACGAGGAAAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| 3UTR CCA 72 bp | CTAGAAGAGCCCTTCCCTGGCAGGTTGGAGAGACAGTaGGGTTTAGGAGTTAAAGGTGAAGCAAATAGAAGC | + |
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Preference number: 3 (lower is better) Translates to: LEEPFPGRLERQ*GLGVKGEANRS Trigger: GCTTCTATTTGCTTCACCTTTAACTCCTAAACCCCACTGTCTCTCCAACCTGCCAGGGAAGGGCTCTTCTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| 3UTR-3UTR CAA 90 bp | CAAGGTGAGAGGACTTGGAGGCTGGGGAAAATGTTAAGATCTAGAGAAATATCTCCCTTCCCTGGCAGGTaGGAGAGACAGTGGGGTTTA | + |
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Preference number: 3 (lower is better) Translates to: QGERTWRLGKMLRSREISPFPGR*ERQWGL Trigger: TAAACCCCACTGTCTCTCCAACCTGCCAGGGAAGGG...AGATATTTCTCTAGATCTTAACATTTTCCCCAGCCTCCAAGTCCTCTCACCTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| 3UTR CCA 72 bp | GCTGTGAGGTCAGAGGTAAGGCAAGGTGAGAGGACTTaGAGGCTGGGGAAAATGTTAAGATCTAGAGAAATA | + |
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Preference number: 3 (lower is better) Translates to: AVRSEVRQGERT*RLGKMLRSREI Trigger: TATTTCTCTAGATCTTAACATTTTCCCCAGCCTCCAAGTCCTCTCACCTTGCCTTACCTCTGACCTCACAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| CDS-3UTR CCA 90 bp | GTGCTGGGTCAGGAGTGGGTAGCTGTGAGGTCAGAGGTAAGGCAAGGTGAGAGGTCTGGCCGAAAGATCTaGCCAAAAGGGCCGGAGCGG | + |
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Preference number: 4 (lower is better) Translates to: VLGQEWVAVRSEVRQGERSGRKI*PKGPER Trigger: CCGCTCCGGCCCTTTTGGCCAGATCTTTCGGCCAGA...CCTCTCACCTTGCCTTACCTCTGACCTCACAGCTACCCACTCCTGACCCAGCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| CDS-3UTR TCA 90 bp | GTGCTGGGTCAGGAGTGGGTAGCTGTGAGGTCAGAGGTAAGGCAAGGTGAGAGGATCTGGTTACCGCATTaGCCGGCTTGCAGGTGCACG | + |
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Preference number: 4 (lower is better) Translates to: VLGQEWVAVRSEVRQGERIWLPH*PACRCT Trigger: CGTGCACCTGCAAGCCGGTCAATGCGGTAACCAGAT...CCTCTCACCTTGCCTTACCTCTGACCTCACAGCTACCCACTCCTGACCCAGCAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| CDS-3UTR TCA 90 bp | TCCTCGTCCTTCAGCACTTCTCTGGTAGGAACTGAACTAAGGCACAAGGGCAGGGTCAGACACCTTGGGTaGTGGCACCACGCTGAACGT | + |
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Preference number: 4 (lower is better) Translates to: SSSFSTSLVGTELRHKGRVRHLG*WHHAER Trigger: ACGTTCAGCGTGGTGCCATCACCCAAGGTGTCTGAC...CCTGCCCTTGTGCCTTAGTTCAGTTCCTACCAGAGAAGTGCTGAAGGACGAGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| CDS-3UTR GCA 90 bp | AGGTTGGAGAGACAGTGGGGTTTAGGAGTTAAAGGTGAAGCAAATAGAAGCAACCCATGCCTGAGCCGGTaGCACCTCCGAGCGAGTGGG | + |
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Preference number: 4 (lower is better) Translates to: RLERQWGLGVKGEANRSNPCLSR*HLRASG Trigger: CCCACTCGCTCGGAGGTGGCACCGGCTCAGGCATGG...GTTGCTTCTATTTGCTTCACCTTTAACTCCTAAACCCCACTGTCTCTCCAACCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| 3UTR CAA 72 bp | CGCTCATGGGAACTAGAAGAGCCCTTCCCTGGCAGGTaGGAGAGACAGTGGGGTTTAGGAGTTAAAGGTGAA | + |
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Preference number: 4 (lower is better) Translates to: RSWELEEPFPGR*ERQWGLGVKGE Trigger: TTCACCTTTAACTCCTAAACCCCACTGTCTCTCCAACCTGCCAGGGAAGGGCTCTTCTAGTTCCCATGAGCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| CDS-3UTR GCA 90 bp | ATGGGAACTAGAAGAGCCCTTCCCTGGCAGGTTGGAGAGACAGTGGGGTTTAGGTGCACACTTAACATCTaGTCGTCTACCTCCTTCATG | + |
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Preference number: 4 (lower is better) Translates to: MGTRRALPWQVGETVGFRCTLNI*SSTSFM Trigger: CATGAAGGAGGTAGACGAGCAGATGTTAAGTGTGCA...CCTAAACCCCACTGTCTCTCCAACCTGCCAGGGAAGGGCTCTTCTAGTTCCCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| CDS-3UTR CCA 90 bp | CTCTCTTTTTCCTCGTCCTTCAGCACTTCTCTGGTAGGAACTGAACTAAGGCACCGACCAGCACGGCTCTaGGAACATAGTTTCCACCTG | + |
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Preference number: 4 (lower is better) Translates to: LSFSSSFSTSLVGTELRHRPARL*EHSFHL Trigger: CAGGTGGAAACTATGTTCCCAGAGCCGTGCTGGTCG...GTGCCTTAGTTCAGTTCCTACCAGAGAAGTGCTGAAGGACGAGGAAAAAGAGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| CDS-3UTR CCA 90 bp | AGGTTGGAGAGACAGTGGGGTTTAGGAGTTAAAGGTGAAGCAAATAGAAGCAACCATAGTTTCCACCTGTaGCCTCATTGTAGTAGACAT | + |
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Preference number: 4 (lower is better) Translates to: RLERQWGLGVKGEANRSNHSFHL*PHCSRH Trigger: ATGTCTACTACAATGAGGCCACAGGTGGAAACTATG...GTTGCTTCTATTTGCTTCACCTTTAACTCCTAAACCCCACTGTCTCTCCAACCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| CDS-3UTR GCA 90 bp | GGGAAAATGTTAAGATCTAGAGAAATATCTGGGCATGTCAGAGGTGGAGGAGAAGTTCATATTGCTCTCTaGTTCCGTAAACTCCATCTC | + |
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Preference number: 4 (lower is better) Translates to: GKMLRSREISGHVRGGGEVHIAL*FRKLHL Trigger: GAGATGGAGTTTACGGAAGCAGAGAGCAATATGAAC...TTCTCCTCCACCTCTGACATGCCCAGATATTTCTCTAGATCTTAACATTTTCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| CDS-3UTR CAA 90 bp | GCCAGAGTGAAGGTGCTGGGTCAGGAGTGGGTAGCTGTGAGGTCAGAGGTAAGGGATCTGGTTACCGCATaGACCGGCTTGCAGGTGCAC | + |
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Preference number: 5 (lower is better) Translates to: ARVKVLGQEWVAVRSEVRDLVTA*TGLQVH Trigger: GTGCACCTGCAAGCCGGTCAATGCGGTAACCAGATC...CCTTACCTCTGACCTCACAGCTACCCACTCCTGACCCAGCACCTTCACTCTGGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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| CDS-3UTR CAA 90 bp | ACTTACGGGAGCCAGAGTGAAGGTGCTGGGTCAGGAGTGGGTAGCTGTGAGGTCATATTCACAGCCAGCTaGCGTAGATCTGCATTGAGC | + |
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Preference number: 5 (lower is better) Translates to: TYGSQSEGAGSGVGSCEVIFTAS*RRSALS Trigger: GCTCAATGCAGATCTACGCAAGCTGGCTGTGAATAT...GACCTCACAGCTACCCACTCCTGACCCAGCACCTTCACTCTGGCTCCCGTAAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071135.6 |
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