Pregenerated sensors for TUBB3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062380Ensembl transcript IDs: ENSMUST00000071134.4
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CCTGGGAGCCCTAATGAGCTGGTGAGAAGCAAAGCTGGGGGCAGTGTCAGTAGCTGTCTTGGCCCTGGCTaGCACTTGGCCCCACACCCC | + |
|
Preference number: 2 (lower is better) Translates to: PGSPNELVRSKAGGSVSSCLGPG*HLAPHP Trigger: GGGGTGTGGGGCCAAGTGGCAGCCAGGGCCAAGACA...GCTACTGACACTGCCCCCAGCTTTGCTTCTCACCAGCTCATTAGGGCTCCCAGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071134.4 |
||
| 3UTR-3UTR CCA 90 bp | AGCAACATAAATACAGAGGTGGCTAAAATGGGGAGGACAGAGCCAAGTGGACTCGCCCTGGCTGCCACTTaGCCCCACACCCCAGCTGCG | + |
|
Preference number: 2 (lower is better) Translates to: SNINTEVAKMGRTEPSGLALAAT*PHTPAA Trigger: CGCAGCTGGGGTGTGGGGCCAAGTGGCAGCCAGGGC...GAGTCCACTTGGCTCTGTCCTCCCCATTTTAGCCACCTCTGTATTTATGTTGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000071134.4 |
||
| 3UTR-3UTR TCA 90 bp | AGCAACATAAATACAGAGGTGGCTAAAATGGGGAGGACAGAGCCAAGTGGACTCGCCCTAATGAGCTGGTaGGAAGCAAAGCTGGGGGCA | + |
|
Preference number: 2 (lower is better) Translates to: SNINTEVAKMGRTEPSGLALMSW*EAKLGA Trigger: TGCCCCCAGCTTTGCTTCTCACCAGCTCATTAGGGC...GAGTCCACTTGGCTCTGTCCTCCCCATTTTAGCCACCTCTGTATTTATGTTGCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000071134.4 |
||
| 3UTR-3UTR CAA 90 bp | AGCAACATAAATACAGAGGTGGCTAAAATGGGGAGGACAGAGCCAAGTGGACTCGGCCCTGGCTGCCACTaGGCCCCACACCCCAGCTGC | + |
|
Preference number: 3 (lower is better) Translates to: SNINTEVAKMGRTEPSGLGPGCH*APHPSC Trigger: GCAGCTGGGGTGTGGGGCCAAGTGGCAGCCAGGGCC...GAGTCCACTTGGCTCTGTCCTCCCCATTTTAGCCACCTCTGTATTTATGTTGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000071134.4 |
||
| 3UTR-3UTR CAA 90 bp | AGCAACATAAATACAGAGGTGGCTAAAATGGGGAGGACAGAGCCAAGTGGACTCGGGGACAGATGCTGCTaGTCTTGGCCCTGGCTGCCA | + |
|
Preference number: 3 (lower is better) Translates to: SNINTEVAKMGRTEPSGLGDRCC*SWPWLP Trigger: TGGCAGCCAGGGCCAAGACAAGCAGCATCTGTCCCC...GAGTCCACTTGGCTCTGTCCTCCCCATTTTAGCCACCTCTGTATTTATGTTGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000071134.4 |
||
| 3UTR TCA 72 bp | CTGAAGGACTTTAACCTGGGAGCCCTAATGAGCTGGTaGGAAGCAAAGCTGGGGGCAGTGTCAGTAGCTAGA | + |
|
Preference number: 3 (lower is better) Translates to: LKDFNLGALMSW*EAKLGAVSVAR Trigger: TCTAGCTACTGACACTGCCCCCAGCTTTGCTTCTCACCAGCTCATTAGGGCTCCCAGGTTAAAGTCCTTCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071134.4 |
||
| CDS-3UTR TCA 90 bp | ACAGATGCTGCTTGTCTTGGCCCTGGCTGCCACTTGGCCCCACACCCCAGCTGCCTCCAGCTGCAGGTCTaGGTCCCCTACATAGTTGCC | + |
|
Preference number: 4 (lower is better) Translates to: TDAACLGPGCHLAPHPSCLQLQV*VPYIVA Trigger: GGCAACTATGTAGGGGACTCAGACCTGCAGCTGGAG...GCAGCTGGGGTGTGGGGCCAAGTGGCAGCCAGGGCCAAGACAAGCAGCATCTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000071134.4 |
||
| CDS-3UTR TCA 90 bp | ACAGATGCTGCTTGTCTTGGCCCTGGCTGCCACTTGGCCCCACACCCCAGCTGCAGGTCGGCATTGAGCTaGCCAGGGAATCGAAGGGAG | + |
|
Preference number: 4 (lower is better) Translates to: TDAACLGPGCHLAPHPSCRSALS*PGNRRE Trigger: CTCCCTTCGATTCCCTGGTCAGCTCAATGCCGACCT...GCAGCTGGGGTGTGGGGCCAAGTGGCAGCCAGGGCCAAGACAAGCAGCATCTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071134.4 |
||
| CDS-3UTR CCA 90 bp | CCTGGGAGCCCTAATGAGCTGGTGAGAAGCAAAGCTGGGGGCAGTGTCAGTAGCAGGGCACGGTACTGCTaGCTGCCCCGGGCTGTAAGT | + |
|
Preference number: 4 (lower is better) Translates to: PGSPNELVRSKAGGSVSSRARYC*LPRAVS Trigger: ACTTACAGCCCGGGGCAGCCAGCAGTACCGTGCCCT...GCTACTGACACTGCCCCCAGCTTTGCTTCTCACCAGCTCATTAGGGCTCCCAGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071134.4 |
||
| CDS-3UTR CCA 90 bp | ACAGATGCTGCTTGTCTTGGCCCTGGCTGCCACTTGGCCCCACACCCCAGCTGCACCGAACACTGTCCATaGTTCCAGGTTCCAAGTCCA | + |
|
Preference number: 4 (lower is better) Translates to: TDAACLGPGCHLAPHPSCTEHCP*FQVPSP Trigger: TGGACTTGGAACCTGGAACCATGGACAGTGTTCGGT...GCAGCTGGGGTGTGGGGCCAAGTGGCAGCCAGGGCCAAGACAAGCAGCATCTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071134.4 |
||
| CDS-3UTR TCA 90 bp | AGCAACATAAATACAGAGGTGGCTAAAATGGGGAGGACAGAGCCAAGTGGACTCTGCGGAGGTCGGCATTaGGCTGACCAGGGAATCGAA | + |
|
Preference number: 4 (lower is better) Translates to: SNINTEVAKMGRTEPSGLCGGRH*ADQGIE Trigger: TTCGATTCCCTGGTCAGCTCAATGCCGACCTCCGCA...GAGTCCACTTGGCTCTGTCCTCCCCATTTTAGCCACCTCTGTATTTATGTTGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071134.4 |
||
| CDS-3UTR GCA 90 bp | AGCAACATAAATACAGAGGTGGCTAAAATGGGGAGGACAGAGCCAAGTGGACTCAGTCCCCTACATAGTTaGCGCTGGGGTCTATGCCGT | + |
|
Preference number: 4 (lower is better) Translates to: SNINTEVAKMGRTEPSGLSPLHS*RWGLCR Trigger: ACGGCATAGACCCCAGCGGCAACTATGTAGGGGACT...GAGTCCACTTGGCTCTGTCCTCCCCATTTTAGCCACCTCTGTATTTATGTTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000071134.4 |
||