Pregenerated sensors for TUBB2B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045136Ensembl transcript IDs: ENSMUST00000075774.5
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGCCCTGGGTTTGATTCCCAGCATCATAAAAATGATATAACTTGGTaGCTACTATCAATGATCAACATTATTGATAATGCTATTCTTCAG | + |
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Preference number: 1 (lower is better) Translates to: GPGFDSQHHKNDITW*LLSMINIIDNAILQ Trigger: CTGAAGAATAGCATTATCAATAATGTTGATCATTGATAGTAGTCACCAAGTTATATCATTTTTATGATGCTGGGAATCAAACCCAGGGCC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075774.5 |
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| 3UTR-3UTR TCA 90 bp | AAAGGTTTATGTGATTTTAGCCATTACAACAGGAGTTCAGAAAGATCTCAAGTGAGTGACAGGCAACAGTaGAGAGCACCAGAGACCCAG | + |
|
Preference number: 2 (lower is better) Translates to: KGLCDFSHYNRSSERSQVSDRQQ*RAPETQ Trigger: CTGGGTCTCTGGTGCTCTTCACTGTTGCCTGTCACT...CACTTGAGATCTTTCTGAACTCCTGTTGTAATGGCTAAAATCACATAAACCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075774.5 |
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| 3UTR-3UTR CAA 90 bp | GAAATAAAGGTCTGGCAACATCTTCATAAAAACACACTCTCAATAAACAAGTCGCTTCTCATTGTTGGATaGAGTAAGGCCATTTTTGGT | + |
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Preference number: 3 (lower is better) Translates to: EIKVWQHLHKNTLSINKSLLIVG*SKAIFG Trigger: ACCAAAAATGGCCTTACTCAATCCAACAATGAGAAG...CGACTTGTTTATTGAGAGTGTGTTTTTATGAAGATGTTGCCAGACCTTTATTTC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000075774.5 |
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| CDS-3UTR CCA 90 bp | CCCAGCACAAACCTAAGACCATTCTCCTTCCTTCAACTGCCAAGGTATTTTCACTTTCCTGCACCACTCTaGCCGAACACGAAGTTGTCC | + |
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Preference number: 4 (lower is better) Translates to: PSTNLRPFSFLQLPRYFHFPAPL*PNTKLS Trigger: GGACAACTTCGTGTTCGGCCAGAGTGGTGCAGGAAA...GTGAAAATACCTTGGCAGTTGAAGGAAGGAGAATGGTCTTAGGTTTGTGCTGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075774.5 |
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| CDS-3UTR TCA 90 bp | CAGAAGAGGAAACTAATTTTTCACTCTCCTTTAAATTCTGTGCTGTGTGCCTCTAGGTGGCTGACATCTTaGGGCCACGAGGAGGGATGT | + |
|
Preference number: 4 (lower is better) Translates to: QKRKLIFHSPLNSVLCASRWLTS*GHEEGC Trigger: ACATCCCTCCTCGTGGCCTCAAGATGTCAGCCACCT...AGAGGCACACAGCACAGAATTTAAAGGAGAGTGAAAAATTAGTTTCCTCTTCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075774.5 |
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