Pregenerated sensors for TUBB2A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000058672

Ensembl transcript IDs: ENSMUST00000056427.10

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR GCA 90 bp	CTGAGACAATACTGTGATCTTGAAAGAGGTTCACACTATTACATCAACAGTGAACAAATAGAAAGACCATaGTGGAGGACAACAGAAGTT	+
Preference number: 2 (lower is better) Translates to: LRQYCDLERGSHYYINSEQIERP*WRTTEV Trigger: AACTTCTGTTGTCCTCCAGCATGGTCTTTCTATTTG...TTCACTGTTGATGTAATAGTGTGAACCTCTTTCAAGATCACAGTATTGTCTCAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056427.10
3UTR TCA 72 bp	AAAGAGGTTCACACTATTACATCAACAGTGAATTTCTaGCAGAGGCAAACTGAGCACCATAATTTACAAATA	+
Preference number: 3 (lower is better) Translates to: KEVHTITSTVNF*QRQTEHHNLQI Trigger: TATTTGTAAATTATGGTGCTCAGTTTGCCTCTGTCAGAAATTCACTGTTGATGTAATAGTGTGAACCTCTTT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056427.10
CDS-3UTR CCA 90 bp	ACCATGCTGGAGGACAACAGAAGTTCACTAAGGGTGCACACTGTATCTGAGAAGTTTCCTGCACCACTCTaGCCGAACACAAAGTTGTCT	+
Preference number: 4 (lower is better) Translates to: TMLEDNRSSLRVHTVSEKFPAPL*PNTKLS Trigger: AGACAACTTTGTGTTCGGCCAGAGTGGTGCAGGAAA...CTTCTCAGATACAGTGTGCACCCTTAGTGAACTTCTGTTGTCCTCCAGCATGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056427.10
CDS-3UTR GCA 90 bp	CTGAGACAATACTGTGATCTTGAAAGAGGTTCACACTATTACATCAACAGTGAATGCCCAGTTATTTCCTaGACCACTCTGGCCGAACAC	+
Preference number: 4 (lower is better) Translates to: LRQYCDLERGSHYYINSECPVIS*TTLAEH Trigger: GTGTTCGGCCAGAGTGGTGCAGGAAATAACTGGGCA...TTCACTGTTGATGTAATAGTGTGAACCTCTTTCAAGATCACAGTATTGTCTCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056427.10
CDS-3UTR GCA 90 bp	TTTCTGAGACAATACTGTGATCTTGAAAGAGGTTCACACTATTACATCAACAGTGAGGTACATATTTGTTaGCAGCAGCTTCATTGTAGT	+
Preference number: 4 (lower is better) Translates to: FLRQYCDLERGSHYYINSEVHIC*QQLHCS Trigger: ACTACAATGAAGCTGCTGGCAACAAATATGTACCTC...ACTGTTGATGTAATAGTGTGAACCTCTTTCAAGATCACAGTATTGTCTCAGAAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056427.10
CDS-3UTR CAA 90 bp	TTTCTGAGACAATACTGTGATCTTGAAAGAGGTTCACACTATTACATCAACAGTGCCCGAGGTACATATTaGTTGCCAGCAGCTTCATTG	+
Preference number: 5 (lower is better) Translates to: FLRQYCDLERGSHYYINSARGTY*LPAASL Trigger: CAATGAAGCTGCTGGCAACAAATATGTACCTCGGGC...ACTGTTGATGTAATAGTGTGAACCTCTTTCAAGATCACAGTATTGTCTCAGAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056427.10

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