Pregenerated sensors for TUBB1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000016255

Ensembl transcript IDs: ENSMUST00000016399.6

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	TGCTGTTCCTTGTCTGAATGGACAGCAGCTGTTGGTCCACTTCCTTaGTGGACATCTTACCCCGGAATATACAAGCCACAGTCAGGTAGC	+
Preference number: 5 (lower is better) Translates to: CCSLSEWTAAVGPLP*WTSYPGIYKPQSGS Trigger: GCTACCTGACTGTGGCTTGTATATTCCGGGGTAAGATGTCCACCAAGGAAGTGGACCAACAGCTGCTGTCCATTCAGACAAGGAACAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016399.6
CDS GCA 72 bp	GAACAAAACTGTCAGGCTGAAAGAGGACTCCCAATCTaGTGGATCGGATGCTGTCCATTGTCCCGGGTTCCA	+
Preference number: 6 (lower is better) Translates to: EQNCQAERGLPI*WIGCCPLSRVP Trigger: TGGAACCCGGGACAATGGACAGCATCCGATCCAGCAGATTGGGAGTCCTCTTTCAGCCTGACAGTTTTGTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016399.6
CDS CAA 72 bp	GCAGTTGCTGTTCCTTGTCTGAATGGACAGCAGCTGTaGGTCCACTTCCTTGGTGGACATCTTACCCCGGAA	+
Preference number: 6 (lower is better) Translates to: AVAVPCLNGQQL*VHFLGGHLTPE Trigger: TTCCGGGGTAAGATGTCCACCAAGGAAGTGGACCAACAGCTGCTGTCCATTCAGACAAGGAACAGCAACTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016399.6
CDS CCA 72 bp	TCTGAATGGACAGCAGCTGTTGGTCCACTTCCTTGGTaGACATCTTACCCCGGAATATACAAGCCACAGTCA	+
Preference number: 6 (lower is better) Translates to: SEWTAAVGPLPW*TSYPGIYKPQS Trigger: TGACTGTGGCTTGTATATTCCGGGGTAAGATGTCCACCAAGGAAGTGGACCAACAGCTGCTGTCCATTCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016399.6
CDS CCA 72 bp	TTGTCTGAATGGACAGCAGCTGTTGGTCCACTTCCTTaGTGGACATCTTACCCCGGAATATACAAGCCACAG	+
Preference number: 6 (lower is better) Translates to: LSEWTAAVGPLP*WTSYPGIYKPQ Trigger: CTGTGGCTTGTATATTCCGGGGTAAGATGTCCACCAAGGAAGTGGACCAACAGCTGCTGTCCATTCAGACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016399.6
CDS CAA 90 bp	TTCCACAAAGCAGTTGCTGTTCCTTGTCTGAATGGACAGCAGCTGTaGGTCCACTTCCTTGGTGGACATCTTACCCCGGAATATACAAGC	+
Preference number: 6 (lower is better) Translates to: FHKAVAVPCLNGQQL*VHFLGGHLTPEYTS Trigger: GCTTGTATATTCCGGGGTAAGATGTCCACCAAGGAAGTGGACCAACAGCTGCTGTCCATTCAGACAAGGAACAGCAACTGCTTTGTGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016399.6

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