Pregenerated sensors for TUBA3A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000067702

Ensembl transcript IDs: ENSMUST00000088246.6

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR GCA 90 bp	AATATATCCTTTATTTCCAATGGTGGGGAAGACATAAATGGACGGCCGCCAGCCATGGACGACACAATCTaGCCAATCAGACGATTGAGG	+
Preference number: 4 (lower is better) Translates to: NISFISNGGEDINGRPPAMDDTI*PIRRLR Trigger: CCTCAATCGTCTGATTGGGCAGATTGTGTCGTCCAT...GGCTGGCGGCCGTCCATTTATGTCTTCCCCACCATTGGAAATAAAGGATATATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088246.6
CDS-3UTR GCA 90 bp	AATAATATATCCTTTATTTCCAATGGTGGGGAAGACATAAATGGACGGCCGCCAGGTCGACAATCTCTTTaGCGATGGTGTAGTGGCCTC	+
Preference number: 4 (lower is better) Translates to: NNISFISNGGEDINGRPPGRQSL*RWCSGL Trigger: GAGGCCACTACACCATCGGCAAAGAGATTGTCGACC...TGGCGGCCGTCCATTTATGTCTTCCCCACCATTGGAAATAAAGGATATATTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088246.6
CDS-3UTR CCA 90 bp	AATAATATATCCTTTATTTCCAATGGTGGGGAAGACATAAATGGACGGCCGCCACAATCTCTTTGCCGATaGTGTAGTGGCCTCTGGCAT	+
Preference number: 4 (lower is better) Translates to: NNISFISNGGEDINGRPPQSLCR*CSGLWH Trigger: ATGCCAGAGGCCACTACACCATCGGCAAAGAGATTG...TGGCGGCCGTCCATTTATGTCTTCCCCACCATTGGAAATAAAGGATATATTATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088246.6
CDS-3UTR TCA 90 bp	TTTAATAATATATCCTTTATTTCCAATGGTGGGGAAGACATAAATGGACGGCCGGCCCAATCAGACGATTaGGGTTGGTGTATGTGGGAC	+
Preference number: 4 (lower is better) Translates to: FNNISFISNGGEDINGRPAQSDD*GWCMWD Trigger: GTCCCACATACACCAACCTCAATCGTCTGATTGGGC...CGGCCGTCCATTTATGTCTTCCCCACCATTGGAAATAAAGGATATATTATTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088246.6
CDS-3UTR GCA 90 bp	TTTAATAATATATCCTTTATTTCCAATGGTGGGGAAGACATAAATGGACGGCCGAAAGCACAGTCGGAATaGTCTAGGGTGGTGTGCGTG	+
Preference number: 4 (lower is better) Translates to: FNNISFISNGGEDINGRPKAQSE*SRVVCV Trigger: CACGCACACCACCCTAGAGCATTCCGACTGTGCTTT...CGGCCGTCCATTTATGTCTTCCCCACCATTGGAAATAAAGGATATATTATTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088246.6
CDS-3UTR GCA 90 bp	AATAATATATCCTTTATTTCCAATGGTGGGGAAGACATAAATGGACGGCCGCCACTTTGTCTTGATGGTTaGAATAGCCGCGTTGACATC	+
Preference number: 4 (lower is better) Translates to: NNISFISNGGEDINGRPPLCLDG*NSRVDI Trigger: GATGTCAACGCGGCTATTGCAACCATCAAGACAAAG...TGGCGGCCGTCCATTTATGTCTTCCCCACCATTGGAAATAAAGGATATATTATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088246.6
CDS-3UTR CCA 90 bp	TTTAATAATATATCCTTTATTTCCAATGGTGGGGAAGACATAAATGGACGGCCGAATGGTTTTGTCGCTTaGCATCTGACCGTCAGGCTG	+
Preference number: 4 (lower is better) Translates to: FNNISFISNGGEDINGRPNGFVA*HLTVRL Trigger: CAGCCTGACGGTCAGATGCCAAGCGACAAAACCATT...CGGCCGTCCATTTATGTCTTCCCCACCATTGGAAATAAAGGATATATTATTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088246.6

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