RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TTLL4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033257

Ensembl transcript IDs: ENSMUST00000042125.15, ENSMUST00000113678.2, ENSMUST00000129890.8, ENSMUST00000141119.8

Found 399 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ATCAAGGGGTCCCCAAGTCTGGTGGACTCCAGGCAACTAGTGGGCTaGTCAGTGTTGGCCTGTTTCTGCAGCTACAGAGTTGGAAACTAT +
Preference number: 1 (lower is better)
Translates to: IKGSPSLVDSRQLVG*SVLACFCSYRVGNY
Trigger: ATAGTTTCCAACTCTGTAGCTGCAGAAACAGGCCAACACTGACCAGCCCACTAGTTGCCTGGAGTCCACCAGACTTGGGGACCCCTTGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR TCA 90 bp ATCCTTCACTGGAGCCCTAGAGACTCCCAGAAGATGGAGAGCTACTaGTGGGGTGGAAGCTTAAATGGATATGGTGTGGAGGTCACCCAA +
Preference number: 1 (lower is better)
Translates to: ILHWSPRDSQKMESY*WGGSLNGYGVEVTQ
Trigger: TTGGGTGACCTCCACACCATATCCATTTAAGCTTCCACCCCATCAGTAGCTCTCCATCTTCTGGGAGTCTCTAGGGCTCCAGTGAAGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR TCA 90 bp CTGGGGAGAACAGTAGTGCTTCAGGGGCCAGTGTCCTTGGAGATCTaGATGCACAGTTCACTCAGTCAGTGTTTACTCAGTGCTCAGTGT +
Preference number: 1 (lower is better)
Translates to: LGRTVVLQGPVSLEI*MHSSLSQCLLSAQC
Trigger: ACACTGAGCACTGAGTAAACACTGACTGAGTGAACTGTGCATTCAGATCTCCAAGGACACTGGCCCCTGAAGCACTACTGTTCTCCCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTTATTCCTTAATCAGACTTaGGCCAGGGAGTATGGCTCAGCAGTACAAACTTGCCTGGAGCTG +
Preference number: 1 (lower is better)
Translates to: VCVCVCVCVLFLNQT*AREYGSAVQTCLEL
Trigger: CAGCTCCAGGCAAGTTTGTACTGCTGAGCCATACTCCCTGGCCCAAGTCTGATTAAGGAATAACACACACACACACACACACACACACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR TCA 90 bp ACAAACCCTGCTAAAAGTAAAAGAGACTACAAGATTTGCCCACACTaGGGAAAGCACAGCGCATTCCACCCTCCTCTACACAGCAGCAAC +
Preference number: 1 (lower is better)
Translates to: TNPAKSKRDYKICPH*GKHSAFHPPLHSSN
Trigger: GTTGCTGCTGTGTAGAGGAGGGTGGAATGCGCTGTGCTTTCCTCAGTGTGGGCAAATCTTGTAGTCTCTTTTACTTTTAGCAGGGTTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR TCA 90 bp AGCAGAAACAGGTCTGAGAATGTCACATGCCTGCCGATGCTGCTGTaGTCATTCACTCACATAGGAAATTCTACTGACTGCTTGCTGCTC +
Preference number: 1 (lower is better)
Translates to: SRNRSENVTCLPMLL*SFTHIGNSTDCLLL
Trigger: GAGCAGCAAGCAGTCAGTAGAATTTCCTATGTGAGTGAATGATCACAGCAGCATCGGCAGGCATGTGACATTCTCAGACCTGTTTCTGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR GCA 90 bp GGCTGTTCTACTTTTAAAGAAACTACCAAACCATCAGTGGACCTGTaGACCTTGCCAGCAATACACGCATCCCTACCAATGGCTCTCCAT +
Preference number: 1 (lower is better)
Translates to: GCSTFKETTKPSVDL*TLPAIHASLPMALH
Trigger: ATGGAGAGCCATTGGTAGGGATGCGTGTATTGCTGGCAAGGTGCACAGGTCCACTGATGGTTTGGTAGTTTCTTTAAAAGTAGAACAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CCA 90 bp TCCACATGGGCTGTTCTACTTTTAAAGAAACTACCAAACCATCAGTaGACCTGTGCACCTTGCCAGCAATACACGCATCCCTACCAATGG +
Preference number: 1 (lower is better)
Translates to: STWAVLLLKKLPNHQ*TCAPCQQYTHPYQW
Trigger: CCATTGGTAGGGATGCGTGTATTGCTGGCAAGGTGCACAGGTCCACTGATGGTTTGGTAGTTTCTTTAAAAGTAGAACAGCCCATGTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR GCA 90 bp CTACTTTTAAAGAAACTACCAAACCATCAGTGGACCTGTGCACCTTaGCAGCAATACACGCATCCCTACCAATGGCTCTCCATTTCCAGA +
Preference number: 1 (lower is better)
Translates to: LLLKKLPNHQWTCAP*QQYTHPYQWLSISR
Trigger: TCTGGAAATGGAGAGCCATTGGTAGGGATGCGTGTATTGCTGGCAAGGTGCACAGGTCCACTGATGGTTTGGTAGTTTCTTTAAAAGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CCA 90 bp GCAAGTTCCCTAGCAGCCTTAACCATTGTCGTATCCCAGGAGAAGTaGAAATCACTGTGTGGATTAGCCCAAGAAAGTTCTTTGGCTATG +
Preference number: 1 (lower is better)
Translates to: ASSLAALTIVVSQEK*KSLCGLAQESSLAM
Trigger: CATAGCCAAAGAACTTTCTTGGGCTAATCCACACAGTGATTTCCACTTCTCCTGGGATACGACAATGGTTAAGGCTGCTAGGGAACTTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR TCA 90 bp CATGGCTCTCAGTGTAGAAACCAAACCCTGCTTTATAAAGCTGCTTaGCTGTCACTGTCTTCTCTACTGAGAAATGAGGTGCTAGCCAGA +
Preference number: 1 (lower is better)
Translates to: HGSQCRNQTLLYKAA*LSLSSLLRNEVLAR
Trigger: TCTGGCTAGCACCTCATTTCTCAGTAGAGAAGACAGTGACAGTCAAGCAGCTTTATAAAGCAGGGTTTGGTTTCTACACTGAGAGCCATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR TCA 90 bp GTGTCTGTCATCTGCAGGAAAATGGGTGAATGGGAAGCCATGATGTaGAGCAAAATAAGGCAAGCTCAGAAAGACAAACACCAAAGCTGG +
Preference number: 1 (lower is better)
Translates to: VSVICRKMGEWEAMM*SKIRQAQKDKHQSW
Trigger: CCAGCTTTGGTGTTTGTCTTTCTGAGCTTGCCTTATTTTGCTTCACATCATGGCTTCCCATTCACCCATTTTCCTGCAGATGACAGACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR GCA 90 bp ACAGTTGTTACCACAACCACAATTAAGACAAAGAATATTCCCATGTaGCTCTTTACAGTCAATCCCATGTCCCCTCCAGATGTAGTCCCC +
Preference number: 1 (lower is better)
Translates to: TVVTTTTIKTKNIPM*LFTVNPMSPPDVVP
Trigger: GGGGACTACATCTGGAGGGGACATGGGATTGACTGTAAAGAGGCACATGGGAATATTCTTTGTCTTAATTGTGGTTGTGGTAACAACTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR GCA 90 bp ACTTTGAAGCCTTTATCATTAAGCAGGAAGCACGGCTTAGGACTTTaGTATCCAGCTTTCTTCACAACTGTCAACACAGCATTAGGACTG +
Preference number: 1 (lower is better)
Translates to: TLKPLSLSRKHGLGL*YPAFFTTVNTALGL
Trigger: CAGTCCTAATGCTGTGTTGACAGTTGTGAAGAAAGCTGGATAGCAAAGTCCTAAGCCGTGCTTCCTGCTTAATGATAAAGGCTTCAAAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CCA 90 bp AAAAGACGACTTTATTCCTTGTCTCAGGAGCCTTCCTCCAGAGGCTaGGTAACTTACCAACTTGGAAAAACATCTGATGTACTGATAAAT +
Preference number: 1 (lower is better)
Translates to: KRRLYSLSQEPSSRG*VTYQLGKTSDVLIN
Trigger: ATTTATCAGTACATCAGATGTTTTTCCAAGTTGGTAAGTTACCCAGCCTCTGGAGGAAGGCTCCTGAGACAAGGAATAAAGTCGTCTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR GCA 90 bp CTCTTTATAAATAACTGCAAGGGTTCAATTGTGACCAACATCTTGTaGTCACACAAGTTACTGCAATGGCTTTGTCCATTCCAATTGGTC +
Preference number: 1 (lower is better)
Translates to: LFINNCKGSIVTNIL*SHKLLQWLCPFQLV
Trigger: GACCAATTGGAATGGACAAAGCCATTGCAGTAACTTGTGTGAGCACAAGATGTTGGTCACAATTGAACCCTTGCAGTTATTTATAAAGAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR GCA 90 bp TGTTTCCAGGCCCAGAGCAAACTAGACATTTGTTGGAGCAGTAATCGGAGGGGTCTTTCCAGGGCTCCATaGCAACTGGTCAAGGGCTCT +
Preference number: 2 (lower is better)
Translates to: CFQAQSKLDICWSSNRRGLSRAP*QLVKGS
Trigger: AGAGCCCTTGACCAGTTGGCATGGAGCCCTGGAAAG...ACCCCTCCGATTACTGCTCCAACAAATGTCTAGTTTGCTCTGGGCCTGGAAACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CAA 90 bp GTGAAACCTCTTCCAATCCAAACTGTCTCATCTTGGCCTCCTTCCTaGGCTCTACTTCCTCACACTGGGGAGAACAGTAGTGCTTCAGGG +
Preference number: 2 (lower is better)
Translates to: VKPLPIQTVSSWPPS*ALLPHTGENSSASG
Trigger: CCCTGAAGCACTACTGTTCTCCCCAGTGTGAGGAAGTAGAGCCAAGGAAGGAGGCCAAGATGAGACAGTTTGGATTGGAAGAGGTTTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR TCA 90 bp TGTGGAGGTCACCCAAGGCCAGGAGGCCAGGAAATGGGTGTAGCCTGTCATGGTCTTCTTGCTTGTCTTTaGAGAAGTCTGAAGGTTTCT +
Preference number: 2 (lower is better)
Translates to: CGGHPRPGGQEMGVACHGLLACL*RSLKVS
Trigger: AGAAACCTTCAGACTTCTTCAAAGACAAGCAAGAAG...ACCATGACAGGCTACACCCATTTCCTGGCCTCCTGGCCTTGGGTGACCTCCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR CCA 90 bp CTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATACTCTGGTAGAGGCTCAGGCTaGTCAGCAGGCTGGTTCCCT +
Preference number: 2 (lower is better)
Translates to: LPALQMPISTIEPLQKYSGRGSG*SAGWFP
Trigger: AGGGAACCAGCCTGCTGACCAGCCTGAGCCTCTACC...AGAGTATTTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
3UTR CAA 90 bp TCTACTTTTAAAGAAACTACCAAACCATCAGTGGACCTGTGCACCTaGCCAGCAATACACGCATCCCTACCAATGGCTCTCCATTTCCAG +
Preference number: 2 (lower is better)
Translates to: STFKETTKPSVDLCT*PAIHASLPMALHFQ
Trigger: CTGGAAATGGAGAGCCATTGGTAGGGATGCGTGTATTGCTGGCAAGGTGCACAGGTCCACTGATGGTTTGGTAGTTTCTTTAAAAGTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR TCA 90 bp CTTGCTTCTGGCTTCTTTCACTCAGCACAATACTGTAGAGATCATCCCAGATGTCAGAGTTGGAAACTATaGTGGGAGACTCTCAGAGGC +
Preference number: 2 (lower is better)
Translates to: LASGFFHSAQYCRDHPRCQSWKL*WETLRG
Trigger: GCCTCTGAGAGTCTCCCATCATAGTTTCCAACTCTG...ACATCTGGGATGATCTCTACAGTATTGTGCTGAGTGAAAGAAGCCAGAAGCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR TCA 90 bp CTTGCTTCTGGCTTCTTTCACTCAGCACAATACTGTAGAGATCATCCCAGATGTTGCTTCGGCAAGCTCTaGGTGAAGGGTGATAGGTAT +
Preference number: 2 (lower is better)
Translates to: LASGFFHSAQYCRDHPRCCFGKL*VKGDRY
Trigger: ATACCTATCACCCTTCACTCAGAGCTTGCCGAAGCA...ACATCTGGGATGATCTCTACAGTATTGTGCTGAGTGAAAGAAGCCAGAAGCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR CCA 90 bp GCACTAGGATACTGTAACCAGGACAAGAGGGTGTTGGCTGTTGATATCAGAACAGGGTGGAAGCTTAAATaGATATGGTGTGGAGGTCAC +
Preference number: 2 (lower is better)
Translates to: ALGYCNQDKRVLAVDIRTGWKLK*IWCGGH
Trigger: GTGACCTCCACACCATATCCATTTAAGCTTCCACCC...TGTTCTGATATCAACAGCCAACACCCTCTTGTCCTGGTTACAGTATCCTAGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR CCA 90 bp AATCATGCTAAGTCAGATAAGCCAGACACAAAAGATCACAATCCTGTTTGTGTCACTCAGTGCTCAGTGTaGACTGAGTCCTGGGGGAGG +
Preference number: 2 (lower is better)
Translates to: NHAKSDKPDTKDHNPVCVTQCSV*TESWGR
Trigger: CCTCCCCCAGGACTCAGTCCACACTGAGCACTGAGT...GACACAAACAGGATTGTGATCTTTTGTGTCTGGCTTATCTGACTTAGCATGATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR CCA 90 bp CAAACCAAAAGTTTCAAGGGTTGGAGAGATGGCCTAGTGGTTAAGAGCATGGATAGGGGCCAGTGTCCTTaGAGATCTGAATGCACAGTT +
Preference number: 2 (lower is better)
Translates to: QTKSFKGWRDGLVVKSMDRGQCP*RSECTV
Trigger: AACTGTGCATTCAGATCTCCAAGGACACTGGCCCCT...ATCCATGCTCTTAACCACTAGGCCATCTCTCCAACCCTTGAAACTTTTGGTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR CCA 90 bp ACTTCTCAGATACCAAAGCACACAGGGGTTCAATCCCTTAGGCAACATGGAGCTAGGACAAGAGGGTGTTaGCTGTTGATATCAGAACAG +
Preference number: 2 (lower is better)
Translates to: TSQIPKHTGVQSLRQHGARTRGC*LLISEQ
Trigger: CTGTTCTGATATCAACAGCCAACACCCTCTTGTCCT...AGCTCCATGTTGCCTAAGGGATTGAACCCCTGTGTGCTTTGGTATCTGAGAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR CCA 90 bp CTTGCTTCTGGCTTCTTTCACTCAGCACAATACTGTAGAGATCATCCCAGATGTTCCATTTCCAGACACTaGCATTCCAGCTGGACCACT +
Preference number: 2 (lower is better)
Translates to: LASGFFHSAQYCRDHPRCSISRH*HSSWTT
Trigger: AGTGGTCCAGCTGGAATGCCAGTGTCTGGAAATGGA...ACATCTGGGATGATCTCTACAGTATTGTGCTGAGTGAAAGAAGCCAGAAGCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CAA 90 bp CAGAACAGATTTTCCAGTACAGCTTGGACTCTCCACTGTCTGACTTaGAAGCCTTTATCATTAAGCAGGAAGCACGGCTTAGGACTTTGC +
Preference number: 2 (lower is better)
Translates to: QNRFSSTAWTLHCLT*KPLSLSRKHGLGLC
Trigger: GCAAAGTCCTAAGCCGTGCTTCCTGCTTAATGATAAAGGCTTCAAAGTCAGACAGTGGAGAGTCCAAGCTGTACTGGAAAATCTGTTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR TCA 90 bp ATTTATTCATTTATAAAGAAGGCAACTGTGTCTGTCATCTGCAGGAAAATGGGTACAGGTCCCAGGAGGTaGGTGCTGGGGAACACTAGG +
Preference number: 2 (lower is better)
Translates to: IYSFIKKATVSVICRKMGTGPRR*VLGNTR
Trigger: CCTAGTGTTCCCCAGCACTCACCTCCTGGGACCTGT...ACCCATTTTCCTGCAGATGACAGACACAGTTGCCTTCTTTATAAATGAATAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR GCA 90 bp CTTGCTTCTGGCTTCTTTCACTCAGCACAATACTGTAGAGATCATCCCAGATGTTCAGTGTTTACTCAGTaGTCAGTGTGGACTGAGTCC +
Preference number: 2 (lower is better)
Translates to: LASGFFHSAQYCRDHPRCSVFTQ*SVWTES
Trigger: GGACTCAGTCCACACTGAGCACTGAGTAAACACTGA...ACATCTGGGATGATCTCTACAGTATTGTGCTGAGTGAAAGAAGCCAGAAGCAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR GCA 90 bp GAGAAGTGGAAATCACTGTGTGGATTAGCCCAAGAAAGTTCTTTGGCTATGGTCCCTTGGAGATCTGAATaGACAGTTCACTCAGTCAGT +
Preference number: 2 (lower is better)
Translates to: EKWKSLCGLAQESSLAMVPWRSE*TVHSVS
Trigger: ACTGACTGAGTGAACTGTGCATTCAGATCTCCAAGG...GACCATAGCCAAAGAACTTTCTTGGGCTAATCCACACAGTGATTTCCACTTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR GCA 90 bp ACTTCTCAGATACCAAAGCACACAGGGGTTCAATCCCTTAGGCAACATGGAGCTACAAAGGACAAATCTTaGTTATCAGATACAAGGCCC +
Preference number: 2 (lower is better)
Translates to: TSQIPKHTGVQSLRQHGATKDKS*LSDTRP
Trigger: GGGCCTTGTATCTGATAAGCAAGATTTGTCCTTTGT...AGCTCCATGTTGCCTAAGGGATTGAACCCCTGTGTGCTTTGGTATCTGAGAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR TCA 90 bp CAAACCAAAAGTTTCAAGGGTTGGAGAGATGGCCTAGTGGTTAAGAGCATGGATTCAACAGGACAATTTTaGGGTCGGCCAACTATATAC +
Preference number: 2 (lower is better)
Translates to: QTKSFKGWRDGLVVKSMDSTGQF*GRPTIY
Trigger: GTATATAGTTGGCCGACCTCAAAATTGTCCTGTTGA...ATCCATGCTCTTAACCACTAGGCCATCTCTCCAACCCTTGAAACTTTTGGTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR CCA 90 bp ACTGTGGAAAAGAAGGAGTTTCCTCAGATACTGAAAACTAGAACTACCATACAGCCTTCCTCCAGAGGCTaGGTAACTTACCAACTTGGA +
Preference number: 2 (lower is better)
Translates to: TVEKKEFPQILKTRTTIQPSSRG*VTYQLG
Trigger: TCCAAGTTGGTAAGTTACCCAGCCTCTGGAGGAAGG...CTGTATGGTAGTTCTAGTTTTCAGTATCTGAGGAAACTCCTTCTTTTCCACAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR CCA 90 bp CTTGCTTCTGGCTTCTTTCACTCAGCACAATACTGTAGAGATCATCCCAGATGTAAACTAGACATTTGTTaGAGCAGTAATCGGAGGGGT +
Preference number: 2 (lower is better)
Translates to: LASGFFHSAQYCRDHPRCKLDIC*SSNRRG
Trigger: ACCCCTCCGATTACTGCTCCAACAAATGTCTAGTTT...ACATCTGGGATGATCTCTACAGTATTGTGCTGAGTGAAAGAAGCCAGAAGCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR GCA 90 bp CCCAGATGTGGCATTGGTTTTTCCTTGCAGATGTTTAGACAGTATCTACTAAATAGCCTCTGTGGGGACTaGTTCTACAACTTCTCAGAT +
Preference number: 2 (lower is better)
Translates to: PRCGIGFSLQMFRQYLLNSLCGD*FYNFSD
Trigger: ATCTGAGAAGTTGTAGAAGCAGTCCCCACAGAGGCT...ATTTAGTAGATACTGTCTAAACATCTGCAAGGAAAAACCAATGCCACATCTGGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR CCA 90 bp ACTTCTCAGATACCAAAGCACACAGGGGTTCAATCCCTTAGGCAACATGGAGCTCTGAGGAAATGGTTTTaGGGGAATCATTTGATATTT +
Preference number: 2 (lower is better)
Translates to: TSQIPKHTGVQSLRQHGALRKWF*GNHLIF
Trigger: AAATATCAAATGATTCCCCCAAAACCATTTCCTCAG...AGCTCCATGTTGCCTAAGGGATTGAACCCCTGTGTGCTTTGGTATCTGAGAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR TCA 90 bp GAGAAGTGGAAATCACTGTGTGGATTAGCCCAAGAAAGTTCTTTGGCTATGGTCATTAGCTGTCAGAGATaGGAAGCCTATTCTATAAGA +
Preference number: 2 (lower is better)
Translates to: EKWKSLCGLAQESSLAMVISCQR*EAYSIR
Trigger: TCTTATAGAATAGGCTTCTCATCTCTGACAGCTAAT...GACCATAGCCAAAGAACTTTCTTGGGCTAATCCACACAGTGATTTCCACTTCTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR TCA 90 bp ATTTATTCATTTATAAAGAAGGCAACTGTGTCTGTCATCTGCAGGAAAATGGGTTGCTCTGGCCTCTTCTaGGACTTCTGTAGCTGTTCT +
Preference number: 2 (lower is better)
Translates to: IYSFIKKATVSVICRKMGCSGLF*DFCSCS
Trigger: AGAACAGCTACAGAAGTCTCAGAAGAGGCCAGAGCA...ACCCATTTTCCTGCAGATGACAGACACAGTTGCCTTCTTTATAAATGAATAAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR CCA 90 bp ACTGTGGAAAAGAAGGAGTTTCCTCAGATACTGAAAACTAGAACTACCATACAGTCCCAGATGTGGCATTaGTTTTTCCTTGCAGATGTT +
Preference number: 2 (lower is better)
Translates to: TVEKKEFPQILKTRTTIQSQMWH*FFLADV
Trigger: AACATCTGCAAGGAAAAACCAATGCCACATCTGGGA...CTGTATGGTAGTTCTAGTTTTCAGTATCTGAGGAAACTCCTTCTTTTCCACAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CAA 90 bp ACTCATTTCAACAGGACAATTTTGAGGTCGGCCAACTATATACAGTaGTTACCACAACCACAATTAAGACAAAGAATATTCCCATGTGCC +
Preference number: 2 (lower is better)
Translates to: THFNRTILRSANYIQ*LPQPQLRQRIFPCA
Trigger: GGCACATGGGAATATTCTTTGTCTTAATTGTGGTTGTGGTAACAACTGTATATAGTTGGCCGACCTCAAAATTGTCCTGTTGAAATGAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR CCA 90 bp ACAGTTGTTACCACAACCACAATTAAGACAAAGAATATTCCCATGTGCCTCTTTGCTCTAGGAGTCATGTaGAAAGAAAGAAGTCTTCCT +
Preference number: 2 (lower is better)
Translates to: TVVTTTTIKTKNIPMCLFALGVM*KERSLP
Trigger: AGGAAGACTTCTTTCTTTCCACATGACTCCTAGAGC...AAAGAGGCACATGGGAATATTCTTTGTCTTAATTGTGGTTGTGGTAACAACTGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR CCA 90 bp TATGGTTTCTCTCAATGTTTTGTGTCACGGGTACACGTGCTCTTTATAAATAACCACAAGTTACTGCAATaGCTTTGTCCATTCCAATTG +
Preference number: 2 (lower is better)
Translates to: YGFSQCFVSRVHVLFINNHKLLQ*LCPFQL
Trigger: CAATTGGAATGGACAAAGCCATTGCAGTAACTTGTG...GTTATTTATAAAGAGCACGTGTACCCGTGACACAAAACATTGAGAGAAACCATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR TCA 90 bp ATTTATTCATTTATAAAGAAGGCAACTGTGTCTGTCATCTGCAGGAAAATGGGTCTTTATAAAGCTGCTTaGCTGTCACTGTCTTCTCTA +
Preference number: 2 (lower is better)
Translates to: IYSFIKKATVSVICRKMGLYKAA*LSLSSL
Trigger: TAGAGAAGACAGTGACAGTCAAGCAGCTTTATAAAG...ACCCATTTTCCTGCAGATGACAGACACAGTTGCCTTCTTTATAAATGAATAAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CAA 90 bp GCACAATACTGTAGAGATCATCCCAGATGTGGCATTGGTTTTTCCTaGCAGATGTTTAGACAGTATCTACTAAATAATTTGTTCTTTCAT +
Preference number: 2 (lower is better)
Translates to: AQYCRDHPRCGIGFS*QMFRQYLLNNLFFH
Trigger: ATGAAAGAACAAATTATTTAGTAGATACTGTCTAAACATCTGCAAGGAAAAACCAATGCCACATCTGGGATGATCTCTACAGTATTGTGC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR TCA 72 bp ACGGTGACCACAGGCCTGAGCACACTAGCTGAGCTGTaGCAGCTCCGCCACAGAACTGCTAAGCTAAGAGTA +
Preference number: 3 (lower is better)
Translates to: TVTTGLSTLAEL*QLRHRTAKLRV
Trigger: TACTCTTAGCTTAGCAGTTCTGTGGCGGAGCTGTCACAGCTCAGCTAGTGTGCTCAGGCCTGTGGTCACCGT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR TCA 72 bp CTCAGGACTGCCTGTAACTCTAGCTCCAAAGGGATCTaGCCTCTCTGGCCTCCGAGGACAGTTGCACACACA +
Preference number: 3 (lower is better)
Translates to: LRTACNSSSKGI*PLWPPRTVAHT
Trigger: TGTGTGTGCAACTGTCCTCGGAGGCCAGAGAGGTCAGATCCCTTTGGAGCTAGAGTTACAGGCAGTCCTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CCA 72 bp GGAGAGCTACTGATGGGGTGGAAGCTTAAATGGATATaGTGTGGAGGTCACCCAAGGCCAGGAGGCCAGGAA +
Preference number: 3 (lower is better)
Translates to: GELLMGWKLKWI*CGGHPRPGGQE
Trigger: TTCCTGGCCTCCTGGCCTTGGGTGACCTCCACACCATATCCATTTAAGCTTCCACCCCATCAGTAGCTCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR TCA 72 bp AGCAAAAGAGCTGCCACCCTGACGATGGGCCAGAAATaGCACAATCCCCTGGTAGTTGCTAGGTCCACACAG +
Preference number: 3 (lower is better)
Translates to: SKRAATLTMGQK*HNPLVVARSTQ
Trigger: CTGTGTGGACCTAGCAACTACCAGGGGATTGTGTCATTTCTGGCCCATCGTCAGGGTGGCAGCTCTTTTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CCA 72 bp TGTGCACCTTGCCAGCAATACACGCATCCCTACCAATaGCTCTCCATTTCCAGACACTGGCATTCCAGCTGG +
Preference number: 3 (lower is better)
Translates to: CAPCQQYTHPYQ*LSISRHWHSSW
Trigger: CCAGCTGGAATGCCAGTGTCTGGAAATGGAGAGCCATTGGTAGGGATGCGTGTATTGCTGGCAAGGTGCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR GCA 72 bp ACAGGACCACAGCAGTTCTGCAGCCTCTGTGGGGACTaGTTCTACAACTTCTCAGATACCAAAGCACACAGG +
Preference number: 3 (lower is better)
Translates to: TGPQQFCSLCGD*FYNFSDTKAHR
Trigger: CCTGTGTGCTTTGGTATCTGAGAAGTTGTAGAAGCAGTCCCCACAGAGGCTGCAGAACTGCTGTGGTCCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR CAA 90 bp TGTTTCCAGGCCCAGAGCAAACTAGACATTTGTTGGAGCAGTAATCGGAGGGGTTCTTGGCCTCCTTCCTaGGCTCTACTTCCTCACACT +
Preference number: 3 (lower is better)
Translates to: CFQAQSKLDICWSSNRRGSWPPS*ALLPHT
Trigger: AGTGTGAGGAAGTAGAGCCAAGGAAGGAGGCCAAGA...ACCCCTCCGATTACTGCTCCAACAAATGTCTAGTTTGCTCTGGGCCTGGAAACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR TCA 72 bp TGGAGCCCTAGAGACTCCCAGAAGATGGAGAGCTACTaGTGGGGTGGAAGCTTAAATGGATATGGTGTGGAG +
Preference number: 3 (lower is better)
Translates to: WSPRDSQKMESY*WGGSLNGYGVE
Trigger: CTCCACACCATATCCATTTAAGCTTCCACCCCATCAGTAGCTCTCCATCTTCTGGGAGTCTCTAGGGCTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR GCA 72 bp AAGAAACTACCAAACCATCAGTGGACCTGTGCACCTTaGCAGCAATACACGCATCCCTACCAATGGCTCTCC +
Preference number: 3 (lower is better)
Translates to: KKLPNHQWTCAP*QQYTHPYQWLS
Trigger: GGAGAGCCATTGGTAGGGATGCGTGTATTGCTGGCAAGGTGCACAGGTCCACTGATGGTTTGGTAGTTTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR TCA 72 bp GCTGCTGTGATCATTCACTCACATAGGAAATTCTACTaGCTGCTTGCTGCTCCCACTGACCTGAAGCTGGTG +
Preference number: 3 (lower is better)
Translates to: AAVIIHSHRKFY*LLAAPTDLKLV
Trigger: CACCAGCTTCAGGTCAGTGGGAGCAGCAAGCAGTCAGTAGAATTTCCTATGTGAGTGAATGATCACAGCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR GCA 72 bp CTAAGAGTACTGCAATTCCTGGCGCCGCACTCCTGCTaGTCTGAGGAAATGGTTTTGGGGGAATCATTTGAT +
Preference number: 3 (lower is better)
Translates to: LRVLQFLAPHSC*SEEMVLGESFD
Trigger: ATCAAATGATTCCCCCAAAACCATTTCCTCAGAGCAGCAGGAGTGCGGCGCCAGGAATTGCAGTACTCTTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR GCA 72 bp AAGCTAAGAGTACTGCAATTCCTGGCGCCGCACTCCTaGTGCTCTGAGGAAATGGTTTTGGGGGAATCATTT +
Preference number: 3 (lower is better)
Translates to: KLRVLQFLAPHS*CSEEMVLGESF
Trigger: AAATGATTCCCCCAAAACCATTTCCTCAGAGCAGCAGGAGTGCGGCGCCAGGAATTGCAGTACTCTTAGCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR GCA 72 bp TCTAATAATCTCCCACAGACAGGACCACAGCAGTTCTaGAGCCTCTGTGGGGACTGCTTCTACAACTTCTCA +
Preference number: 3 (lower is better)
Translates to: SNNLPQTGPQQF*SLCGDCFYNFS
Trigger: TGAGAAGTTGTAGAAGCAGTCCCCACAGAGGCTGCAGAACTGCTGTGGTCCTGTCTGTGGGAGATTATTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CCA 72 bp TTCCAATCCAAACTGTCTCATCTTGGCCTCCTTCCTTaGCTCTACTTCCTCACACTGGGGAGAACAGTAGTG +
Preference number: 3 (lower is better)
Translates to: FQSKLSHLGLLP*LYFLTLGRTVV
Trigger: CACTACTGTTCTCCCCAGTGTGAGGAAGTAGAGCCAAGGAAGGAGGCCAAGATGAGACAGTTTGGATTGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR CAA 90 bp GCACTAGGATACTGTAACCAGGACAAGAGGGTGTTGGCTGTTGATATCAGAACACCAAACTGTCTCATCTaGGCCTCCTTCCTTGGCTCT +
Preference number: 3 (lower is better)
Translates to: ALGYCNQDKRVLAVDIRTPNCLI*ASFLGS
Trigger: AGAGCCAAGGAAGGAGGCCAAGATGAGACAGTTTGG...TGTTCTGATATCAACAGCCAACACCCTCTTGTCCTGGTTACAGTATCCTAGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR CAA 90 bp TGTTTCCAGGCCCAGAGCAAACTAGACATTTGTTGGAGCAGTAATCGGAGGGGTACCCATTCTGTGACCTaGAACCCAGTTAGGTCATCT +
Preference number: 3 (lower is better)
Translates to: CFQAQSKLDICWSSNRRGTHSVT*NPVRSS
Trigger: AGATGACCTAACTGGGTTCAAGGTCACAGAATGGGT...ACCCCTCCGATTACTGCTCCAACAAATGTCTAGTTTGCTCTGGGCCTGGAAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR TCA 72 bp ACAGTAGTGCTTCAGGGGCCAGTGTCCTTGGAGATCTaGATGCACAGTTCACTCAGTCAGTGTTTACTCAGT +
Preference number: 3 (lower is better)
Translates to: TVVLQGPVSLEI*MHSSLSQCLLS
Trigger: ACTGAGTAAACACTGACTGAGTGAACTGTGCATTCAGATCTCCAAGGACACTGGCCCCTGAAGCACTACTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR TCA 72 bp CTGACTTCAGCAGCTATAGCTGAGTTCCCCACCAGATaGCAGCTAACCAGACGGTATGTCCTCCTATATATG +
Preference number: 3 (lower is better)
Translates to: LTSAAIAEFPTR*QLTRRYVLLYM
Trigger: CATATATAGGAGGACATACCGTCTGGTTAGCTGTCATCTGGTGGGGAACTCAGCTATAGCTGCTGAAGTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CCA 72 bp TACACAGCAGCAACTAAAATGATCAGGATCCTTCACTaGAGCCCTAGAGACTCCCAGAAGATGGAGAGCTAC +
Preference number: 3 (lower is better)
Translates to: YTAATKMIRILH*SPRDSQKMESY
Trigger: GTAGCTCTCCATCTTCTGGGAGTCTCTAGGGCTCCAGTGAAGGATCCTGATCATTTTAGTTGCTGCTGTGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR CAA 90 bp GAGAAGTGGAAATCACTGTGTGGATTAGCCCAAGAAAGTTCTTTGGCTATGGTCAGACGACTTTATTCCTaGTCTCAGGAGCCTTCCTCC +
Preference number: 3 (lower is better)
Translates to: EKWKSLCGLAQESSLAMVRRLYS*SQEPSS
Trigger: GGAGGAAGGCTCCTGAGACAAGGAATAAAGTCGTCT...GACCATAGCCAAAGAACTTTCTTGGGCTAATCCACACAGTGATTTCCACTTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR TCA 72 bp GCTAAAAGTAAAAGAGACTACAAGATTTGCCCACACTaGGGAAAGCACAGCGCATTCCACCCTCCTCTACAC +
Preference number: 3 (lower is better)
Translates to: AKSKRDYKICPH*GKHSAFHPPLH
Trigger: GTGTAGAGGAGGGTGGAATGCGCTGTGCTTTCCTCAGTGTGGGCAAATCTTGTAGTCTCTTTTACTTTTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR TCA 72 bp AGGTCTGAGAATGTCACATGCCTGCCGATGCTGCTGTaGTCATTCACTCACATAGGAAATTCTACTGACTGC +
Preference number: 3 (lower is better)
Translates to: RSENVTCLPMLL*SFTHIGNSTDC
Trigger: GCAGTCAGTAGAATTTCCTATGTGAGTGAATGATCACAGCAGCATCGGCAGGCATGTGACATTCTCAGACCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR GCA 72 bp AACAATCATGTTAACCACAACACCAACAGCCAAGGTTaGTTTCACCCCATAAGGTTCCTCCTTGCCAACCAC +
Preference number: 3 (lower is better)
Translates to: NNHVNHNTNSQG*FHPIRFLLANH
Trigger: GTGGTTGGCAAGGAGGAACCTTATGGGGTGAAAGCAACCTTGGCTGTTGGTGTTGTGGTTAACATGATTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CCA 72 bp CTCCATGCCAACTGGTCAAGGGCTCTAGGAGTCATGTaGAAAGAAAGAAGTCTTCCTCTTTCCAAAACTCAG +
Preference number: 3 (lower is better)
Translates to: LHANWSRALGVM*KERSLPLSKTQ
Trigger: CTGAGTTTTGGAAAGAGGAAGACTTCTTTCTTTCCACATGACTCCTAGAGCCCTTGACCAGTTGGCATGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CCA 72 bp CATTGTCGTATCCCAGGAGAAGTGGAAATCACTGTGTaGATTAGCCCAAGAAAGTTCTTTGGCTATGGTCGC +
Preference number: 3 (lower is better)
Translates to: HCRIPGEVEITV*ISPRKFFGYGR
Trigger: GCGACCATAGCCAAAGAACTTTCTTGGGCTAATCCACACAGTGATTTCCACTTCTCCTGGGATACGACAATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CCA 72 bp CATTGTTTCCAGGCCCAGAGCAAACTAGACATTTGTTaGAGCAGTAATCGGAGGGGTTCTTCAGAGCTAACA +
Preference number: 3 (lower is better)
Translates to: HCFQAQSKLDIC*SSNRRGSSELT
Trigger: TGTTAGCTCTGAAGAACCCCTCCGATTACTGCTCCAACAAATGTCTAGTTTGCTCTGGGCCTGGAAACAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CCA 72 bp GCTGTTCTACTTTTAAAGAAACTACCAAACCATCAGTaGACCTGTGCACCTTGCCAGCAATACACGCATCCC +
Preference number: 3 (lower is better)
Translates to: AVLLLKKLPNHQ*TCAPCQQYTHP
Trigger: GGGATGCGTGTATTGCTGGCAAGGTGCACAGGTCCACTGATGGTTTGGTAGTTTCTTTAAAAGTAGAACAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CCA 72 bp TGTGTGTGTGTGTGTGTGTTATTCCTTAATCAGACTTaGGCCAGGGAGTATGGCTCAGCAGTACAAACTTGC +
Preference number: 3 (lower is better)
Translates to: CVCVCVLFLNQT*AREYGSAVQTC
Trigger: GCAAGTTTGTACTGCTGAGCCATACTCCCTGGCCCAAGTCTGATTAAGGAATAACACACACACACACACACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR CAA 90 bp TGTTTCCAGGCCCAGAGCAAACTAGACATTTGTTGGAGCAGTAATCGGAGGGGTTCTTCTTGCTTGTCTTaGAAGAAGTCTGAAGGTTTC +
Preference number: 3 (lower is better)
Translates to: CFQAQSKLDICWSSNRRGSSCLS*KKSEGF
Trigger: GAAACCTTCAGACTTCTTCAAAGACAAGCAAGAAGA...ACCCCTCCGATTACTGCTCCAACAAATGTCTAGTTTGCTCTGGGCCTGGAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR TCA 72 bp GAAGGCAACTGTGTCTGTCATCTGCAGGAAAATGGGTaGATGGGAAGCCATGATGTGAAGCAAAATAAGGCA +
Preference number: 3 (lower is better)
Translates to: EGNCVCHLQENG*MGSHDVKQNKA
Trigger: TGCCTTATTTTGCTTCACATCATGGCTTCCCATTCACCCATTTTCCTGCAGATGACAGACACAGTTGCCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR GCA 72 bp ACTTTTAAAGAAACTACCAAACCATCAGTGGACCTGTaGACCTTGCCAGCAATACACGCATCCCTACCAATG +
Preference number: 3 (lower is better)
Translates to: TFKETTKPSVDL*TLPAIHASLPM
Trigger: CATTGGTAGGGATGCGTGTATTGCTGGCAAGGTGCACAGGTCCACTGATGGTTTGGTAGTTTCTTTAAAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CCA 72 bp CTAGCAGCCTTAACCATTGTCGTATCCCAGGAGAAGTaGAAATCACTGTGTGGATTAGCCCAAGAAAGTTCT +
Preference number: 3 (lower is better)
Translates to: LAALTIVVSQEK*KSLCGLAQESS
Trigger: AGAACTTTCTTGGGCTAATCCACACAGTGATTTCCACTTCTCCTGGGATACGACAATGGTTAAGGCTGCTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR GCA 72 bp CCTTTATCATTAAGCAGGAAGCACGGCTTAGGACTTTaGTATCCAGCTTTCTTCACAACTGTCAACACAGCA +
Preference number: 3 (lower is better)
Translates to: PLSLSRKHGLGL*YPAFFTTVNTA
Trigger: TGCTGTGTTGACAGTTGTGAAGAAAGCTGGATAGCAAAGTCCTAAGCCGTGCTTCCTGCTTAATGATAAAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CCA 72 bp CTTTATTCCTTGTCTCAGGAGCCTTCCTCCAGAGGCTaGGTAACTTACCAACTTGGAAAAACATCTGATGTA +
Preference number: 3 (lower is better)
Translates to: LYSLSQEPSSRG*VTYQLGKTSDV
Trigger: TACATCAGATGTTTTTCCAAGTTGGTAAGTTACCCAGCCTCTGGAGGAAGGCTCCTGAGACAAGGAATAAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR GCA 72 bp CACACACATTTATGTTTAATGTTCCCTTTCCTGGGATaGTATAAAGATGAAGCCAGACAAGAGACTCCCGCT +
Preference number: 3 (lower is better)
Translates to: HTHLCLMFPFLG*YKDEARQETPA
Trigger: AGCGGGAGTCTCTTGTCTGGCTTCATCTTTATAGCATCCCAGGAAAGGGAACATTAAACATAAATGTGTGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR GCA 72 bp ACCACAACCACAATTAAGACAAAGAATATTCCCATGTaGCTCTTTACAGTCAATCCCATGTCCCCTCCAGAT +
Preference number: 3 (lower is better)
Translates to: TTTTIKTKNIPM*LFTVNPMSPPD
Trigger: ATCTGGAGGGGACATGGGATTGACTGTAAAGAGGCACATGGGAATATTCTTTGTCTTAATTGTGGTTGTGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CCA 72 bp CACACAAGTTACTGCAATGGCTTTGTCCATTCCAATTaGTCACAGCTGCCTTTCAATCTTAAGTGTACTCCA +
Preference number: 3 (lower is better)
Translates to: HTSYCNGFVHSN*SQLPFNLKCTP
Trigger: TGGAGTACACTTAAGATTGAAAGGCAGCTGTGACCAATTGGAATGGACAAAGCCATTGCAGTAACTTGTGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR CAA 90 bp ACAGTTGTTACCACAACCACAATTAAGACAAAGAATATTCCCATGTGCCTCTTTAATCTGCATATAGGCTaGCTTCTGGCTTCTTTCACT +
Preference number: 3 (lower is better)
Translates to: TVVTTTTIKTKNIPMCLFNLHIG*LLASFT
Trigger: AGTGAAAGAAGCCAGAAGCAAGCCTATATGCAGATT...AAAGAGGCACATGGGAATATTCTTTGTCTTAATTGTGGTTGTGGTAACAACTGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR-3UTR CAA 90 bp AAACACAATTTAATCCCCGTTACTACAGCTAAGAAACTGATATCCCTGGTTACTGACAATCTGGCATTTTaGAGGCAAAGATTACAAGTC +
Preference number: 3 (lower is better)
Translates to: KHNLIPVTTAKKLISLVTDNLAF*RQRLQV
Trigger: GACTTGTAATCTTTGCCTCAAAAATGCCAGATTGTC...AGTAACCAGGGATATCAGTTTCTTAGCTGTAGTAACGGGGATTAAATTGTGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR GCA 90 bp TCTGATGAGGGGCAAAGTGGAGGCGGGGTAGAGGCTCAGGCTGGTCAGCAGGCTGTACCAGGAGGGGCCTaGGCTTGGGGAGCTGACTCC +
Preference number: 4 (lower is better)
Translates to: SDEGQSGGGVEAQAGQQAVPGGA*AWGADS
Trigger: GGAGTCAGCTCCCCAAGCGCAGGCCCCTCCTGGTAC...AGCCTGCTGACCAGCCTGAGCCTCTACCCCGCCTCCACTTTGCCCCTCATCAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR TCA 90 bp GTAGAGGCTCAGGCTGGTCAGCAGGCTGGTTCCCTTGAGGTAGCTGAGTGCTCCGGTGCCCAGCCCTGCTaGCAGTGTGCCTACGTGCTT +
Preference number: 4 (lower is better)
Translates to: VEAQAGQQAGSLEVAECSGAQPC*QCAYVL
Trigger: AAGCACGTAGGCACACTGTCAGCAGGGCTGGGCACC...GGAGCACTCAGCTACCTCAAGGGAACCAGCCTGCTGACCAGCCTGAGCCTCTAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR TCA 90 bp TCTGATGAGGGGCAAAGTGGAGGCGGGGTAGAGGCTCAGGCTGGTCAGCAGGCTTGCTGTGGCCTGCAATaGCTGCTGTGGTCCCAGAGC +
Preference number: 4 (lower is better)
Translates to: SDEGQSGGGVEAQAGQQACCGLQ*LLWSQS
Trigger: GCTCTGGGACCACAGCAGTCATTGCAGGCCACAGCA...AGCCTGCTGACCAGCCTGAGCCTCTACCCCGCCTCCACTTTGCCCCTCATCAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp GTAGAGGCTCAGGCTGGTCAGCAGGCTGGTTCCCTTGAGGTAGCTGAGTGCTCCGAGAGCTTGGCAAGCTaGTGCTGGAGCCGCTGGAGC +
Preference number: 4 (lower is better)
Translates to: VEAQAGQQAGSLEVAECSESLAS*CWSRWS
Trigger: GCTCCAGCGGCTCCAGCACCAGCTTGCCAAGCTCTC...GGAGCACTCAGCTACCTCAAGGGAACCAGCCTGCTGACCAGCCTGAGCCTCTAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR TCA 90 bp TCTGATGAGGGGCAAAGTGGAGGCGGGGTAGAGGCTCAGGCTGGTCAGCAGGCTACCGCCTGCTTCTGTTaGGAAGACCCCACTGGAAGC +
Preference number: 4 (lower is better)
Translates to: SDEGQSGGGVEAQAGQQATACFC*EDPTGS
Trigger: GCTTCCAGTGGGGTCTTCTCAACAGAAGCAGGCGGT...AGCCTGCTGACCAGCCTGAGCCTCTACCCCGCCTCCACTTTGCCCCTCATCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR GCA 90 bp TACTCTGATGAGGGGCAAAGTGGAGGCGGGGTAGAGGCTCAGGCTGGTCAGCAGGGGGTTGCTGTGGCCTaGAATGACTGCTGTGGTCCC +
Preference number: 4 (lower is better)
Translates to: YSDEGQSGGGVEAQAGQQGVAVA*NDCCGP
Trigger: GGGACCACAGCAGTCATTGCAGGCCACAGCAACCCC...CTGCTGACCAGCCTGAGCCTCTACCCCGCCTCCACTTTGCCCCTCATCAGAGTA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR TCA 90 bp TACTCTGATGAGGGGCAAAGTGGAGGCGGGGTAGAGGCTCAGGCTGGTCAGCAGAGGCTGGATCTTGGGTaGGGATACTGGCTTCAGGCC +
Preference number: 4 (lower is better)
Translates to: YSDEGQSGGGVEAQAGQQRLDLG*GYWLQA
Trigger: GGCCTGAAGCCAGTATCCTCACCCAAGATCCAGCCT...CTGCTGACCAGCCTGAGCCTCTACCCCGCCTCCACTTTGCCCCTCATCAGAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp GTAGAGGCTCAGGCTGGTCAGCAGGCTGGTTCCCTTGAGGTAGCTGAGTGCTCCGTCTCTAGGAGAGCTTaGCAAGCTGGTGCTGGAGCC +
Preference number: 4 (lower is better)
Translates to: VEAQAGQQAGSLEVAECSVSRRA*QAGAGA
Trigger: GGCTCCAGCACCAGCTTGCCAAGCTCTCCTAGAGAC...GGAGCACTCAGCTACCTCAAGGGAACCAGCCTGCTGACCAGCCTGAGCCTCTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR TCA 90 bp TCTGATGAGGGGCAAAGTGGAGGCGGGGTAGAGGCTCAGGCTGGTCAGCAGGCTAGCAGACACTGTGCCTaGGGGATGTCTCTGCTTGAA +
Preference number: 4 (lower is better)
Translates to: SDEGQSGGGVEAQAGQQASRHCA*GMSLLE
Trigger: TTCAAGCAGAGACATCCCTCAGGCACAGTGTCTGCT...AGCCTGCTGACCAGCCTGAGCCTCTACCCCGCCTCCACTTTGCCCCTCATCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR TCA 90 bp TCTGATGAGGGGCAAAGTGGAGGCGGGGTAGAGGCTCAGGCTGGTCAGCAGGCTGGAAGAGACTGTAGATaGGGGCTGGCCGTACAACTT +
Preference number: 4 (lower is better)
Translates to: SDEGQSGGGVEAQAGQQAGRDCR*GLAVQL
Trigger: AAGTTGTACGGCCAGCCCTCATCTACAGTCTCTTCC...AGCCTGCTGACCAGCCTGAGCCTCTACCCCGCCTCCACTTTGCCCCTCATCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR TCA 90 bp TACTCTGATGAGGGGCAAAGTGGAGGCGGGGTAGAGGCTCAGGCTGGTCAGCAGGACCGATGGTCTGCTTaGCAATGTTGGGGGTCACTG +
Preference number: 4 (lower is better)
Translates to: YSDEGQSGGGVEAQAGQQDRWSA*QCWGSL
Trigger: CAGTGACCCCCAACATTGTCAAGCAGACCATCGGTC...CTGCTGACCAGCCTGAGCCTCTACCCCGCCTCCACTTTGCCCCTCATCAGAGTA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR GCA 90 bp CCAAGTCTGGTGGACTCCAGGCAACTAGTGGGCTGGTCAGTGTTGGCCTGTTTCGGGGTTGCTGTGGCCTaGAATGACTGCTGTGGTCCC +
Preference number: 4 (lower is better)
Translates to: PSLVDSRQLVGWSVLACFGVAVA*NDCCGP
Trigger: GGGACCACAGCAGTCATTGCAGGCCACAGCAACCCC...GAAACAGGCCAACACTGACCAGCCCACTAGTTGCCTGGAGTCCACCAGACTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR GCA 90 bp TCTGATGAGGGGCAAAGTGGAGGCGGGGTAGAGGCTCAGGCTGGTCAGCAGGCTCAAAACGGCTTTGCATaGGAGACAGGTTCCGCCACA +
Preference number: 4 (lower is better)
Translates to: SDEGQSGGGVEAQAGQQAQNGFA*ETGSAT
Trigger: TGTGGCGGAACCTGTCTCGCATGCAAAGCCGTTTTG...AGCCTGCTGACCAGCCTGAGCCTCTACCCCGCCTCCACTTTGCCCCTCATCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CCA 90 bp TACTCTGATGAGGGGCAAAGTGGAGGCGGGGTAGAGGCTCAGGCTGGTCAGCAGGAAGTTGCCATGGGCTaGGCCATGGGGAAGACTGTA +
Preference number: 4 (lower is better)
Translates to: YSDEGQSGGGVEAQAGQQEVAMG*AMGKTV
Trigger: TACAGTCTTCCCCATGGCCCAGCCCATGGCAACTTC...CTGCTGACCAGCCTGAGCCTCTACCCCGCCTCCACTTTGCCCCTCATCAGAGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp GGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATCGCCCTTCCAGCTGGGATTGAGCCCATaGACATGTGAGGCAAGGAGG +
Preference number: 4 (lower is better)
Translates to: GDRGRTFLTFSPSPSPFQLGLSP*TCEARR
Trigger: CCTCCTTGCCTCACATGTCCATGGGCTCAATCCCAG...CTGGAAGGGCGATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp TACTCTGATGAGGGGCAAAGTGGAGGCGGGGTAGAGGCTCAGGCTGGTCAGCAGTCCTTCCTCCCAATCTaGAAGGAGCCTGGGAAGTGG +
Preference number: 4 (lower is better)
Translates to: YSDEGQSGGGVEAQAGQQSFLPI*KEPGKW
Trigger: CCACTTCCCAGGCTCCTTCCAGATTGGGAGGAAGGA...CTGCTGACCAGCCTGAGCCTCTACCCCGCCTCCACTTTGCCCCTCATCAGAGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CCA 90 bp TCTGATGAGGGGCAAAGTGGAGGCGGGGTAGAGGCTCAGGCTGGTCAGCAGGCTGCCCATTTGTGCCCTTaGCATGCAGTCTCATCAGCA +
Preference number: 4 (lower is better)
Translates to: SDEGQSGGGVEAQAGQQAAHLCP*HAVSSA
Trigger: TGCTGATGAGACTGCATGCCAAGGGCACAAATGGGC...AGCCTGCTGACCAGCCTGAGCCTCTACCCCGCCTCCACTTTGCCCCTCATCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp TACTCTGATGAGGGGCAAAGTGGAGGCGGGGTAGAGGCTCAGGCTGGTCAGCAGCTTCAGAGGACAGTGTaGTTCCCTCAGAGGCGCTCT +
Preference number: 4 (lower is better)
Translates to: YSDEGQSGGGVEAQAGQQLQRTV*FPQRRS
Trigger: AGAGCGCCTCTGAGGGAACCACACTGTCCTCTGAAG...CTGCTGACCAGCCTGAGCCTCTACCCCGCCTCCACTTTGCCCCTCATCAGAGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR TCA 90 bp CCCATCACCATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCAGGCCAGGCTCTTCCTTaGAGGGTTCTCCCCAGCTGC +
Preference number: 4 (lower is better)
Translates to: PITIALPALQMPISTIEPGQALP*RVLPSC
Trigger: GCAGCTGGGGAGAACCCTTCAAGGAAGAGCCTGGCC...TGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATGGTGATGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR TCA 90 bp CCAAGTCTGGTGGACTCCAGGCAACTAGTGGGCTGGTCAGTGTTGGCCTGTTTCAGGCTGGATCTTGGGTaGGGATACTGGCTTCAGGCC +
Preference number: 4 (lower is better)
Translates to: PSLVDSRQLVGWSVLACFRLDLG*GYWLQA
Trigger: GGCCTGAAGCCAGTATCCTCACCCAAGATCCAGCCT...GAAACAGGCCAACACTGACCAGCCCACTAGTTGCCTGGAGTCCACCAGACTTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR GCA 90 bp GTAGAGGCTCAGGCTGGTCAGCAGGCTGGTTCCCTTGAGGTAGCTGAGTGCTCCCCTGAGGGATGTCTCTaGTTGAAGCTGTTTCCTCGG +
Preference number: 4 (lower is better)
Translates to: VEAQAGQQAGSLEVAECSPEGCL*LKLFPR
Trigger: CCGAGGAAACAGCTTCAAGCAGAGACATCCCTCAGG...GGAGCACTCAGCTACCTCAAGGGAACCAGCCTGCTGACCAGCCTGAGCCTCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR GCA 90 bp GGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATCGCCCTTCCAGGCCCTGCTGACAGTGTaGCTACGTGCTTCTTTTCCA +
Preference number: 4 (lower is better)
Translates to: GDRGRTFLTFSPSPSPFQALLTV*LRASFP
Trigger: TGGAAAAGAAGCACGTAGGCACACTGTCAGCAGGGC...CTGGAAGGGCGATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp TGTGGAGGTCACCCAAGGCCAGGAGGCCAGGAAATGGGTGTAGCCTGTCATGGTGAAGTTGCCATGGGCTaGGCCATGGGGAAGACTGTA +
Preference number: 4 (lower is better)
Translates to: CGGHPRPGGQEMGVACHGEVAMG*AMGKTV
Trigger: TACAGTCTTCCCCATGGCCCAGCCCATGGCAACTTC...ACCATGACAGGCTACACCCATTTCCTGGCCTCCTGGCCTTGGGTGACCTCCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CCA 90 bp GTAGAGGCTCAGGCTGGTCAGCAGGCTGGTTCCCTTGAGGTAGCTGAGTGCTCCTCCACCTGGTTTGGCTaGAGGTCAGTAGCTGAACCA +
Preference number: 4 (lower is better)
Translates to: VEAQAGQQAGSLEVAECSSTWFG*RSVAEP
Trigger: TGGTTCAGCTACTGACCTCCAGCCAAACCAGGTGGA...GGAGCACTCAGCTACCTCAAGGGAACCAGCCTGCTGACCAGCCTGAGCCTCTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp GTAGAGGCTCAGGCTGGTCAGCAGGCTGGTTCCCTTGAGGTAGCTGAGTGCTCCTCTTCAGGCTCCACCTaGTTTGGCTGGAGGTCAGTA +
Preference number: 4 (lower is better)
Translates to: VEAQAGQQAGSLEVAECSSSGST*FGWRSV
Trigger: TACTGACCTCCAGCCAAACCAGGTGGAGCCTGAAGA...GGAGCACTCAGCTACCTCAAGGGAACCAGCCTGCTGACCAGCCTGAGCCTCTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR TCA 90 bp GGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATCGCCCTTCCAGTGTGAGGCAAGGAGGTaGATGCTGATCCTCTTGGTA +
Preference number: 4 (lower is better)
Translates to: GDRGRTFLTFSPSPSPFQCEARR*MLILLV
Trigger: TACCAAGAGGATCAGCATTCACCTCCTTGCCTCACA...CTGGAAGGGCGATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR TCA 90 bp TCTGATGAGGGGCAAAGTGGAGGCGGGGTAGAGGCTCAGGCTGGTCAGCAGGCTGACTCCATTTGTGAATaGCCTGAATGCCAATGCCTC +
Preference number: 4 (lower is better)
Translates to: SDEGQSGGGVEAQAGQQADSICE*PECQCL
Trigger: GAGGCATTGGCATTCAGGTCATTCACAAATGGAGTC...AGCCTGCTGACCAGCCTGAGCCTCTACCCCGCCTCCACTTTGCCCCTCATCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR GCA 90 bp TCTGATGAGGGGCAAAGTGGAGGCGGGGTAGAGGCTCAGGCTGGTCAGCAGGCTTTCAATGCCCATTTGTaGCCTTGGCATGCAGTCTCA +
Preference number: 4 (lower is better)
Translates to: SDEGQSGGGVEAQAGQQAFNAHL*PWHAVS
Trigger: TGAGACTGCATGCCAAGGGCACAAATGGGCATTGAA...AGCCTGCTGACCAGCCTGAGCCTCTACCCCGCCTCCACTTTGCCCCTCATCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR GCA 90 bp GTAGAGGCTCAGGCTGGTCAGCAGGCTGGTTCCCTTGAGGTAGCTGAGTGCTCCAGCGCTTGGACTGTTTaGTGGTGTTCTCATTGCTCC +
Preference number: 4 (lower is better)
Translates to: VEAQAGQQAGSLEVAECSSAWTV*WCSHCS
Trigger: GGAGCAATGAGAACACCAGCAAACAGTCCAAGCGCT...GGAGCACTCAGCTACCTCAAGGGAACCAGCCTGCTGACCAGCCTGAGCCTCTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp GGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATCGCCCTTCCAGTTCCAGTTTCCAGATTaGCTTCACCTGCTGATGGGC +
Preference number: 4 (lower is better)
Translates to: GDRGRTFLTFSPSPSPFQFQFPD*LHLLMG
Trigger: GCCCATCAGCAGGTGAAGCCAATCTGGAAACTGGAA...CTGGAAGGGCGATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp GTAGAGGCTCAGGCTGGTCAGCAGGCTGGTTCCCTTGAGGTAGCTGAGTGCTCCTGCCATGAGACAGGCTaGATCTTGGGTGAGGATACT +
Preference number: 4 (lower is better)
Translates to: VEAQAGQQAGSLEVAECSCHETG*ILGEDT
Trigger: AGTATCCTCACCCAAGATCCAGCCTGTCTCATGGCA...GGAGCACTCAGCTACCTCAAGGGAACCAGCCTGCTGACCAGCCTGAGCCTCTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp GGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATCGCCCTTCCAGTGCCATGAGACAGGCTaGATCTTGGGTGAGGATACT +
Preference number: 4 (lower is better)
Translates to: GDRGRTFLTFSPSPSPFQCHETG*ILGEDT
Trigger: AGTATCCTCACCCAAGATCCAGCCTGTCTCATGGCA...CTGGAAGGGCGATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp GGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATCGCCCTTCCAGTTATGGTCACCAGGTTaGGGTACACAGTCCCCAGTA +
Preference number: 4 (lower is better)
Translates to: GDRGRTFLTFSPSPSPFQLWSPG*GTQSPV
Trigger: TACTGGGGACTGTGTACCCCAACCTGGTGACCATAA...CTGGAAGGGCGATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp TGTGGAGGTCACCCAAGGCCAGGAGGCCAGGAAATGGGTGTAGCCTGTCATGGTTCTTCTCCAAGTACCTaGGGGTCAACTGCAGACCCA +
Preference number: 4 (lower is better)
Translates to: CGGHPRPGGQEMGVACHGSSPST*GSTADP
Trigger: TGGGTCTGCAGTTGACCCCCAGGTACTTGGAGAAGA...ACCATGACAGGCTACACCCATTTCCTGGCCTCCTGGCCTTGGGTGACCTCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CCA 90 bp TACTCTGATGAGGGGCAAAGTGGAGGCGGGGTAGAGGCTCAGGCTGGTCAGCAGCCAGGCTGGTCAAGATaGACAGAAGAAAGACGAGTG +
Preference number: 4 (lower is better)
Translates to: YSDEGQSGGGVEAQAGQQPGWSR*TEERRV
Trigger: CACTCGTCTTTCTTCTGTCCATCTTGACCAGCCTGG...CTGCTGACCAGCCTGAGCCTCTACCCCGCCTCCACTTTGCCCCTCATCAGAGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp CCCATCACCATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCAGGAGGGGCCTGCGCTTaGGGAGCTGACTCCATTTGT +
Preference number: 4 (lower is better)
Translates to: PITIALPALQMPISTIEPGGACA*GADSIC
Trigger: ACAAATGGAGTCAGCTCCCCAAGCGCAGGCCCCTCC...TGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATGGTGATGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp GGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATCGCCCTTCCAGAGGTCTCGGATCATCTaGCCTTTGATGCTGATGTCC +
Preference number: 4 (lower is better)
Translates to: GDRGRTFLTFSPSPSPFQRSRII*PLMLMS
Trigger: GGACATCAGCATCAAAGGCCAGATGATCCGAGACCT...CTGGAAGGGCGATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR TCA 90 bp CACCCCAGAACACAAAACAGAACTGCCAGTATACTGCTGTGTCTCATCAAGGGGGGAGACTTCATGTGGTaGCCCCAGCAGCCCAGCCAG +
Preference number: 4 (lower is better)
Translates to: HPRTQNRTASILLCLIKGGDFMW*PQQPSQ
Trigger: CTGGCTGGGCTGCTGGGGTCACCACATGAAGTCTCC...CCCCTTGATGAGACACAGCAGTATACTGGCAGTTCTGTTTTGTGTTCTGGGGTG
56% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR GCA 90 bp GTAGAGGCTCAGGCTGGTCAGCAGGCTGGTTCCCTTGAGGTAGCTGAGTGCTCCCCACAAAGCTTTCAATaGCCATTTGTGCCCTTGGCA +
Preference number: 4 (lower is better)
Translates to: VEAQAGQQAGSLEVAECSPQSFQ*PFVPLA
Trigger: TGCCAAGGGCACAAATGGGCATTGAAAGCTTTGTGG...GGAGCACTCAGCTACCTCAAGGGAACCAGCCTGCTGACCAGCCTGAGCCTCTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR GCA 90 bp TACTCTGATGAGGGGCAAAGTGGAGGCGGGGTAGAGGCTCAGGCTGGTCAGCAGGAAAGTCTGGAACTCTaGCCAGAGTACTTGAGGACA +
Preference number: 4 (lower is better)
Translates to: YSDEGQSGGGVEAQAGQQESLEL*PEYLRT
Trigger: TGTCCTCAAGTACTCTGGGCAGAGTTCCAGACTTTC...CTGCTGACCAGCCTGAGCCTCTACCCCGCCTCCACTTTGCCCCTCATCAGAGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp CCAGACAGTAAGGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATGCTACACCAAGAGGCTaGAGGGAAGAAGGGGGAACA +
Preference number: 4 (lower is better)
Translates to: PDSKVTEGEPSSPSPHHHATPRG*REEGGT
Trigger: TGTTCCCCCTTCTTCCCTCCAGCCTCTTGGTGTAGC...ATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACCTTACTGTCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp GGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATCGCCCTTCCAGGGGAATACTTGCAACTaGCAAAACGGACGAGTCCAT +
Preference number: 4 (lower is better)
Translates to: GDRGRTFLTFSPSPSPFQGNTCN*QNGRVH
Trigger: ATGGACTCGTCCGTTTTGCCAGTTGCAAGTATTCCC...CTGGAAGGGCGATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp TGTGGAGGTCACCCAAGGCCAGGAGGCCAGGAAATGGGTGTAGCCTGTCATGGTAGGTCTCGGATCATCTaGCCTTTGATGCTGATGTCC +
Preference number: 4 (lower is better)
Translates to: CGGHPRPGGQEMGVACHGRSRII*PLMLMS
Trigger: GGACATCAGCATCAAAGGCCAGATGATCCGAGACCT...ACCATGACAGGCTACACCCATTTCCTGGCCTCCTGGCCTTGGGTGACCTCCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CCA 90 bp CCAGACAGTAAGGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATCTTCAGAGGACAGTGTaGTTCCCTCAGAGGCGCTCT +
Preference number: 4 (lower is better)
Translates to: PDSKVTEGEPSSPSPHHHLQRTV*FPQRRS
Trigger: AGAGCGCCTCTGAGGGAACCACACTGTCCTCTGAAG...ATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACCTTACTGTCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR TCA 90 bp TACTCTGATGAGGGGCAAAGTGGAGGCGGGGTAGAGGCTCAGGCTGGTCAGCAGATCCTAAAGTTACTCTaGCTGCACTGGGAAGAGGTA +
Preference number: 4 (lower is better)
Translates to: YSDEGQSGGGVEAQAGQQILKLL*LHWEEV
Trigger: TACCTCTTCCCAGTGCAGTCAGAGTAACTTTAGGAT...CTGCTGACCAGCCTGAGCCTCTACCCCGCCTCCACTTTGCCCCTCATCAGAGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR TCA 90 bp CTTGGCCTCCTTCCTTGGCTCTACTTCCTCACACTGGGGAGAACAGTAGTGCTTGAGCCCATGGACATGTaGGGCAAGGAGGTGAATGCT +
Preference number: 4 (lower is better)
Translates to: LGLLPWLYFLTLGRTVVLEPMDM*GKEVNA
Trigger: AGCATTCACCTCCTTGCCTCACATGTCCATGGGCTC...AAGCACTACTGTTCTCCCCAGTGTGAGGAAGTAGAGCCAAGGAAGGAGGCCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CCA 90 bp CCAAGTCTGGTGGACTCCAGGCAACTAGTGGGCTGGTCAGTGTTGGCCTGTTTCTTCCAGTTTCCAGATTaGCTTCACCTGCTGATGGGC +
Preference number: 4 (lower is better)
Translates to: PSLVDSRQLVGWSVLACFFQFPD*LHLLMG
Trigger: GCCCATCAGCAGGTGAAGCCAATCTGGAAACTGGAA...GAAACAGGCCAACACTGACCAGCCCACTAGTTGCCTGGAGTCCACCAGACTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CCA 90 bp GGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATCGCCCTTCCAGACAGTAGCAATGTTTTaGGGCACCTTATGGTCACCA +
Preference number: 4 (lower is better)
Translates to: GDRGRTFLTFSPSPSPFQTVAMF*GTLWSP
Trigger: TGGTGACCATAAGGTGCCCCAAAACATTGCTACTGT...CTGGAAGGGCGATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp CTTGGCCTCCTTCCTTGGCTCTACTTCCTCACACTGGGGAGAACAGTAGTGCTTGGTGCTAGGGATAGATaGGGTGATAGGGGCAGTGAC +
Preference number: 4 (lower is better)
Translates to: LGLLPWLYFLTLGRTVVLGARDR*GDRGSD
Trigger: GTCACTGCCCCTATCACCCCATCTATCCCTAGCACC...AAGCACTACTGTTCTCCCCAGTGTGAGGAAGTAGAGCCAAGGAAGGAGGCCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CCA 90 bp CCAGACAGTAAGGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATTCTTCTCCAAGTACCTaGGGGTCAACTGCAGACCCA +
Preference number: 4 (lower is better)
Translates to: PDSKVTEGEPSSPSPHHHSSPST*GSTADP
Trigger: TGGGTCTGCAGTTGACCCCCAGGTACTTGGAGAAGA...ATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACCTTACTGTCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp CCAGACAGTAAGGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATTCCACCTGGTTTGGCTaGAGGTCAGTAGCTGAACCA +
Preference number: 4 (lower is better)
Translates to: PDSKVTEGEPSSPSPHHHSTWFG*RSVAEP
Trigger: TGGTTCAGCTACTGACCTCCAGCCAAACCAGGTGGA...ATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACCTTACTGTCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp GTAGAGGCTCAGGCTGGTCAGCAGGCTGGTTCCCTTGAGGTAGCTGAGTGCTCCTTGAGCTTGTTTCCATaGTACTTCTGTTCCCACTGG +
Preference number: 4 (lower is better)
Translates to: VEAQAGQQAGSLEVAECSLSLFP*YFCSHW
Trigger: CCAGTGGGAACAGAAGTACCATGGAAACAAGCTCAA...GGAGCACTCAGCTACCTCAAGGGAACCAGCCTGCTGACCAGCCTGAGCCTCTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR TCA 90 bp ACTTCTCAGATACCAAAGCACACAGGGGTTCAATCCCTTAGGCAACATGGAGCTTGCTGTGGCCTGCAATaGCTGCTGTGGTCCCAGAGC +
Preference number: 4 (lower is better)
Translates to: TSQIPKHTGVQSLRQHGACCGLQ*LLWSQS
Trigger: GCTCTGGGACCACAGCAGTCATTGCAGGCCACAGCA...AGCTCCATGTTGCCTAAGGGATTGAACCCCTGTGTGCTTTGGTATCTGAGAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR TCA 90 bp TGTGGAGGTCACCCAAGGCCAGGAGGCCAGGAAATGGGTGTAGCCTGTCATGGTTGCTATTTGGCCTCATaGAGGAGTTGTTGTTCAGCA +
Preference number: 4 (lower is better)
Translates to: CGGHPRPGGQEMGVACHGCYLAS*RSCCSA
Trigger: TGCTGAACAACAACTCCTTCATGAGGCCAAATAGCA...ACCATGACAGGCTACACCCATTTCCTGGCCTCCTGGCCTTGGGTGACCTCCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR GCA 90 bp CCCATCACCATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACCTGAGGGATGTCTCTaGTTGAAGCTGTTTCCTCGG +
Preference number: 4 (lower is better)
Translates to: PITIALPALQMPISTIEPPEGCL*LKLFPR
Trigger: CCGAGGAAACAGCTTCAAGCAGAGACATCCCTCAGG...TGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATGGTGATGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR GCA 90 bp GTAGAGGCTCAGGCTGGTCAGCAGGCTGGTTCCCTTGAGGTAGCTGAGTGCTCCCAGAAAGATTCCAGTTaGTGGTATGGTTTTTGCCTC +
Preference number: 4 (lower is better)
Translates to: VEAQAGQQAGSLEVAECSQKDSS*WYGFCL
Trigger: GAGGCAAAAACCATACCAGCAACTGGAATCTTTCTG...GGAGCACTCAGCTACCTCAAGGGAACCAGCCTGCTGACCAGCCTGAGCCTCTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR GCA 90 bp TACTCTGATGAGGGGCAAAGTGGAGGCGGGGTAGAGGCTCAGGCTGGTCAGCAGCATTCTCATCATGGCTaGAGCTATCTTCCAAACCAT +
Preference number: 4 (lower is better)
Translates to: YSDEGQSGGGVEAQAGQQHSHHG*SYLPNH
Trigger: ATGGTTTGGAAGATAGCTGCAGCCATGATGAGAATG...CTGCTGACCAGCCTGAGCCTCTACCCCGCCTCCACTTTGCCCCTCATCAGAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR GCA 90 bp CAAACCAAAAGTTTCAAGGGTTGGAGAGATGGCCTAGTGGTTAAGAGCATGGATGTACCAGGAGGGGCCTaGGCTTGGGGAGCTGACTCC +
Preference number: 4 (lower is better)
Translates to: QTKSFKGWRDGLVVKSMDVPGGA*AWGADS
Trigger: GGAGTCAGCTCCCCAAGCGCAGGCCCCTCCTGGTAC...ATCCATGCTCTTAACCACTAGGCCATCTCTCCAACCCTTGAAACTTTTGGTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR GCA 90 bp CCAAGTCTGGTGGACTCCAGGCAACTAGTGGGCTGGTCAGTGTTGGCCTGTTTCTTCAATGCCCATTTGTaGCCTTGGCATGCAGTCTCA +
Preference number: 4 (lower is better)
Translates to: PSLVDSRQLVGWSVLACFFNAHL*PWHAVS
Trigger: TGAGACTGCATGCCAAGGGCACAAATGGGCATTGAA...GAAACAGGCCAACACTGACCAGCCCACTAGTTGCCTGGAGTCCACCAGACTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR GCA 90 bp CCAGACAGTAAGGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATAGCGCTTGGACTGTTTaGTGGTGTTCTCATTGCTCC +
Preference number: 4 (lower is better)
Translates to: PDSKVTEGEPSSPSPHHHSAWTV*WCSHCS
Trigger: GGAGCAATGAGAACACCAGCAAACAGTCCAAGCGCT...ATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACCTTACTGTCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp TCTGATGAGGGGCAAAGTGGAGGCGGGGTAGAGGCTCAGGCTGGTCAGCAGGCTCACTTTAGTGCTATTTaGCCTCATGAAGGAGTTGTT +
Preference number: 4 (lower is better)
Translates to: SDEGQSGGGVEAQAGQQAHFSAI*PHEGVV
Trigger: AACAACTCCTTCATGAGGCCAAATAGCACTAAAGTG...AGCCTGCTGACCAGCCTGAGCCTCTACCCCGCCTCCACTTTGCCCCTCATCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp CCAGACAGTAAGGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATAGACAGGCTGGATCTTaGGTGAGGATACTGGCTTCA +
Preference number: 4 (lower is better)
Translates to: PDSKVTEGEPSSPSPHHHRQAGS*VRILAS
Trigger: TGAAGCCAGTATCCTCACCCAAGATCCAGCCTGTCT...ATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACCTTACTGTCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp CCCATCACCATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCAGACCCCACTGGAAGCTaGGGTTCACAAAACAAGCCT +
Preference number: 4 (lower is better)
Translates to: PITIALPALQMPISTIEPDPTGS*GSQNKP
Trigger: AGGCTTGTTTTGTGAACCCCAGCTTCCAGTGGGGTC...TGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATGGTGATGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp CCAGACAGTAAGGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATTCGAGCAGATGCTGGTaGCTTCACAATCCACTTCTG +
Preference number: 4 (lower is better)
Translates to: PDSKVTEGEPSSPSPHHHSSRCW*LHNPLL
Trigger: CAGAAGTGGATTGTGAAGCCACCAGCATCTGCTCGA...ATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACCTTACTGTCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CCA 90 bp CCAGACAGTAAGGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATAACCCGAACATCATCTaGTGTCAAGACGTCCAGCAC +
Preference number: 4 (lower is better)
Translates to: PDSKVTEGEPSSPSPHHHNPNII*CQDVQH
Trigger: GTGCTGGACGTCTTGACACCAGATGATGTTCGGGTT...ATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACCTTACTGTCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp GGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATCGCCCTTCCAGTACTTCTGTTCCCACTaGGTGGTGAGAATGTTGAAA +
Preference number: 4 (lower is better)
Translates to: GDRGRTFLTFSPSPSPFQYFCSH*VVRMLK
Trigger: TTTCAACATTCTCACCACCCAGTGGGAACAGAAGTA...CTGGAAGGGCGATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp CCAGACAGTAAGGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATGAGTCAGTGACTGACTaGGAAGCAGAAGCAGCAGAA +
Preference number: 4 (lower is better)
Translates to: PDSKVTEGEPSSPSPHHHESVTD*EAEAAE
Trigger: TTCTGCTGCTTCTGCTTCCCAGTCAGTCACTGACTC...ATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACCTTACTGTCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR TCA 90 bp ACTTCTCAGATACCAAAGCACACAGGGGTTCAATCCCTTAGGCAACATGGAGCTCCAGTACCCCCTGAATaGTGCCATGAGACAGGCTGG +
Preference number: 4 (lower is better)
Translates to: TSQIPKHTGVQSLRQHGAPVPPE*CHETGW
Trigger: CCAGCCTGTCTCATGGCATCATTCAGGGGGTACTGG...AGCTCCATGTTGCCTAAGGGATTGAACCCCTGTGTGCTTTGGTATCTGAGAAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR TCA 90 bp GGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATCGCCCTTCCAGCTGTGTTCTTTTTATTaGCACTGTAGTTGGTCAGGT +
Preference number: 4 (lower is better)
Translates to: GDRGRTFLTFSPSPSPFQLCSFY*HCSWSG
Trigger: ACCTGACCAACTACAGTGTCAATAAAAAGAACACAG...CTGGAAGGGCGATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR GCA 90 bp ACCATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAGTGGCCTGCAATGACTaGTGTGGTCCCAGAGCTACA +
Preference number: 4 (lower is better)
Translates to: TIALPALQMPISTIEPLQVACND*CGPRAT
Trigger: TGTAGCTCTGGGACCACAGCAGTCATTGCAGGCCAC...TTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR GCA 90 bp CCCATCACCATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACAGGCCACAGGGATGTaGCTCCATCCTAAAGTTACT +
Preference number: 4 (lower is better)
Translates to: PITIALPALQMPISTIEPQATGM*LHPKVT
Trigger: AGTAACTTTAGGATGGAGGCACATCCCTGTGGCCTG...TGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATGGTGATGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp CCCATCACCATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCAAGACAGGCTGGATCTTaGGTGAGGATACTGGCTTCA +
Preference number: 4 (lower is better)
Translates to: PITIALPALQMPISTIEPRQAGS*VRILAS
Trigger: TGAAGCCAGTATCCTCACCCAAGATCCAGCCTGTCT...TGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATGGTGATGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp ACCATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAGGTGCTAGGGATAGATaGGGTGATAGGGGCAGTGAC +
Preference number: 4 (lower is better)
Translates to: TIALPALQMPISTIEPLQGARDR*GDRGSD
Trigger: GTCACTGCCCCTATCACCCCATCTATCCCTAGCACC...TTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp CCAGACAGTAAGGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATGGGAATACTTGCAACTaGCAAAACGGACGAGTCCAT +
Preference number: 4 (lower is better)
Translates to: PDSKVTEGEPSSPSPHHHGNTCN*QNGRVH
Trigger: ATGGACTCGTCCGTTTTGCCAGTTGCAAGTATTCCC...ATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACCTTACTGTCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp CAAACCAAAAGTTTCAAGGGTTGGAGAGATGGCCTAGTGGTTAAGAGCATGGATGAGAGCTTGGCAAGCTaGTGCTGGAGCCGCTGGAGC +
Preference number: 4 (lower is better)
Translates to: QTKSFKGWRDGLVVKSMDESLAS*CWSRWS
Trigger: GCTCCAGCGGCTCCAGCACCAGCTTGCCAAGCTCTC...ATCCATGCTCTTAACCACTAGGCCATCTCTCCAACCCTTGAAACTTTTGGTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR TCA 90 bp CATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAAGGGATGTCTCTGCTTaGAGCTGTTTCCTCGGCGCA +
Preference number: 4 (lower is better)
Translates to: HRPSSPPDAHIYNRTTSKRDVSA*SCFLGA
Trigger: TGCGCCGAGGAAACAGCTTCAAGCAGAGACATCCCT...TTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR TCA 90 bp CTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATACTCTGGCCAGGCTCTTCCTTaGAGGGTTCTCCCCAGCTGC +
Preference number: 4 (lower is better)
Translates to: LPALQMPISTIEPLQKYSGQALP*RVLPSC
Trigger: GCAGCTGGGGAGAACCCTTCAAGGAAGAGCCTGGCC...AGAGTATTTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR TCA 90 bp CATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAGAGCCCATGGACATGTaGGGCAAGGAGGTGAATGCT +
Preference number: 4 (lower is better)
Translates to: HRPSSPPDAHIYNRTTSKEPMDM*GKEVNA
Trigger: AGCATTCACCTCCTTGCCTCACATGTCCATGGGCTC...TTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR TCA 90 bp ACCATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAGGAAGAGACTGTAGATaGGGGCTGGCCGTACAACTT +
Preference number: 4 (lower is better)
Translates to: TIALPALQMPISTIEPLQGRDCR*GLAVQL
Trigger: AAGTTGTACGGCCAGCCCTCATCTACAGTCTCTTCC...TTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR TCA 90 bp CCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATACTCTGATGGAGACTTCATGTGGTaGCCCCAGCAGCCCAGCCAG +
Preference number: 4 (lower is better)
Translates to: PALQMPISTIEPLQKYSDGDFMW*PQQPSQ
Trigger: CTGGCTGGGCTGCTGGGGTCACCACATGAAGTCTCC...ATCAGAGTATTTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR TCA 90 bp CCCATCACCATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCAGTTCTCATTGCTCCTTaGGGACAAAGTCTTCCTGGA +
Preference number: 4 (lower is better)
Translates to: PITIALPALQMPISTIEPVLIAP*GQSLPG
Trigger: TCCAGGAAGACTTTGTCCTCAAGGAGCAATGAGAAC...TGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATGGTGATGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR GCA 90 bp CCAGGAGGCCAGGAAATGGGTGTAGCCTGTCATGGTTTCTTCTTGCTTGTCTTTTGTTGGGGGTCACTGTaGTCATCTTCCACCGAAGCA +
Preference number: 4 (lower is better)
Translates to: PGGQEMGVACHGFFLLVFCWGSL*SSSTEA
Trigger: TGCTTCGGTGGAAGATGAGCACAGTGACCCCCAACA...AAAGACAAGCAAGAAGAAACCATGACAGGCTACACCCATTTCCTGGCCTCCTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR GCA 90 bp CATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAGACCGACCGATGGTCTaGTTGACAATGTTGGGGGTC +
Preference number: 4 (lower is better)
Translates to: HRPSSPPDAHIYNRTTSKDRPMV*LTMLGV
Trigger: GACCCCCAACATTGTCAAGCAGACCATCGGTCGGTC...TTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp ACCATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAATCTTCAGGCTCCACCTaGTTTGGCTGGAGGTCAGTA +
Preference number: 4 (lower is better)
Translates to: TIALPALQMPISTIEPLQSSGST*FGWRSV
Trigger: TACTGACCTCCAGCCAAACCAGGTGGAGCCTGAAGA...TTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp CTTGGCCTCCTTCCTTGGCTCTACTTCCTCACACTGGGGAGAACAGTAGTGCTTACTGTAGATGAGGGCTaGCCGTACAACTTTCTCATG +
Preference number: 4 (lower is better)
Translates to: LGLLPWLYFLTLGRTVVLTVDEG*PYNFLM
Trigger: CATGAGAAAGTTGTACGGCCAGCCCTCATCTACAGT...AAGCACTACTGTTCTCCCCAGTGTGAGGAAGTAGAGCCAAGGAAGGAGGCCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR TCA 90 bp GCACTAGGATACTGTAACCAGGACAAGAGGGTGTTGGCTGTTGATATCAGAACAAGGGATGTCTCTGCTTaGAGCTGTTTCCTCGGCGCA +
Preference number: 4 (lower is better)
Translates to: ALGYCNQDKRVLAVDIRTRDVSA*SCFLGA
Trigger: TGCGCCGAGGAAACAGCTTCAAGCAGAGACATCCCT...TGTTCTGATATCAACAGCCAACACCCTCTTGTCCTGGTTACAGTATCCTAGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR GCA 90 bp GCACTAGGATACTGTAACCAGGACAAGAGGGTGTTGGCTGTTGATATCAGAACAGACCGACCGATGGTCTaGTTGACAATGTTGGGGGTC +
Preference number: 4 (lower is better)
Translates to: ALGYCNQDKRVLAVDIRTDRPMV*LTMLGV
Trigger: GACCCCCAACATTGTCAAGCAGACCATCGGTCGGTC...TGTTCTGATATCAACAGCCAACACCCTCTTGTCCTGGTTACAGTATCCTAGTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CCA 90 bp CTTGGCCTCCTTCCTTGGCTCTACTTCCTCACACTGGGGAGAACAGTAGTGCTTTTGAGCTTGTTTCCATaGTACTTCTGTTCCCACTGG +
Preference number: 4 (lower is better)
Translates to: LGLLPWLYFLTLGRTVVLLSLFP*YFCSHW
Trigger: CCAGTGGGAACAGAAGTACCATGGAAACAAGCTCAA...AAGCACTACTGTTCTCCCCAGTGTGAGGAAGTAGAGCCAAGGAAGGAGGCCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CAA 72 bp CTTCCAATCCAAACTGTCTCATCTTGGCCTCCTTCCTaGGCTCTACTTCCTCACACTGGGGAGAACAGTAGT +
Preference number: 4 (lower is better)
Translates to: LPIQTVSSWPPS*ALLPHTGENSS
Trigger: ACTACTGTTCTCCCCAGTGTGAGGAAGTAGAGCCAAGGAAGGAGGCCAAGATGAGACAGTTTGGATTGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CAA 72 bp CAGGGGTTCAATCCCTTAGGCAACATGGAGCTGCATTaGCTGCTCAAGTTTAACCTGCACACATCCTCCTGT +
Preference number: 4 (lower is better)
Translates to: QGFNPLGNMELH*LLKFNLHTSSC
Trigger: ACAGGAGGATGTGTGCAGGTTAAACTTGAGCAGCAAATGCAGCTCCATGTTGCCTAAGGGATTGAACCCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CAA 72 bp AAAGAAACTACCAAACCATCAGTGGACCTGTGCACCTaGCCAGCAATACACGCATCCCTACCAATGGCTCTC +
Preference number: 4 (lower is better)
Translates to: KETTKPSVDLCT*PAIHASLPMAL
Trigger: GAGAGCCATTGGTAGGGATGCGTGTATTGCTGGCAAGGTGCACAGGTCCACTGATGGTTTGGTAGTTTCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR TCA 90 bp GCACTAGGATACTGTAACCAGGACAAGAGGGTGTTGGCTGTTGATATCAGAACAAGCAGACACTGTGCCTaGGGGATGTCTCTGCTTGAA +
Preference number: 4 (lower is better)
Translates to: ALGYCNQDKRVLAVDIRTSRHCA*GMSLLE
Trigger: TTCAAGCAGAGACATCCCTCAGGCACAGTGTCTGCT...TGTTCTGATATCAACAGCCAACACCCTCTTGTCCTGGTTACAGTATCCTAGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR TCA 90 bp CCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATACTCTGATCCAGTACCCCCTGAATaGTGCCATGAGACAGGCTGG +
Preference number: 4 (lower is better)
Translates to: PALQMPISTIEPLQKYSDPVPPE*CHETGW
Trigger: CCAGCCTGTCTCATGGCATCATTCAGGGGGTACTGG...ATCAGAGTATTTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR TCA 90 bp ACTTCTCAGATACCAAAGCACACAGGGGTTCAATCCCTTAGGCAACATGGAGCTGCTGATTTTGAAGTGTaGCCGACCGATGGTCTGCTT +
Preference number: 4 (lower is better)
Translates to: TSQIPKHTGVQSLRQHGAADFEV*PTDGLL
Trigger: AAGCAGACCATCGGTCGGTCACACTTCAAAATCAGC...AGCTCCATGTTGCCTAAGGGATTGAACCCCTGTGTGCTTTGGTATCTGAGAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR TCA 90 bp CATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAGCTGATTTTGAAGTGTaGCCGACCGATGGTCTGCTT +
Preference number: 4 (lower is better)
Translates to: HRPSSPPDAHIYNRTTSKADFEV*PTDGLL
Trigger: AAGCAGACCATCGGTCGGTCACACTTCAAAATCAGC...TTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR GCA 90 bp ACTTCTCAGATACCAAAGCACACAGGGGTTCAATCCCTTAGGCAACATGGAGCTTGGTACAGAAGACTGTaGTGTCCAACCCCAAGGTGT +
Preference number: 4 (lower is better)
Translates to: TSQIPKHTGVQSLRQHGAWYRRL*CPTPRC
Trigger: ACACCTTGGGGTTGGACAGCACAGTCTTCTGTACCA...AGCTCCATGTTGCCTAAGGGATTGAACCCCTGTGTGCTTTGGTATCTGAGAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR GCA 90 bp CATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAATGGTACAGAAGACTGTaGTGTCCAACCCCAAGGTGT +
Preference number: 4 (lower is better)
Translates to: HRPSSPPDAHIYNRTTSKWYRRL*CPTPRC
Trigger: ACACCTTGGGGTTGGACAGCACAGTCTTCTGTACCA...TTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR GCA 90 bp TGCTGCTCAAGTTTAACCTGCACACATCCTCCTGTGGACTTCAAATGGAGTCTATTGCCAAAACGGCTTTaGATGCGAGACAGGTTCCGC +
Preference number: 4 (lower is better)
Translates to: CCSSLTCTHPPVDFKWSLLPKRL*MRDRFR
Trigger: GCGGAACCTGTCTCGCATGCAAAGCCGTTTTGGCAA...TAGACTCCATTTGAAGTCCACAGGAGGATGTGTGCAGGTTAAACTTGAGCAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CCA 90 bp CCAGACAGTAAGGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATCACTTTAGTGCTATTTaGCCTCATGAAGGAGTTGTT +
Preference number: 4 (lower is better)
Translates to: PDSKVTEGEPSSPSPHHHHFSAI*PHEGVV
Trigger: AACAACTCCTTCATGAGGCCAAATAGCACTAAAGTG...ATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACCTTACTGTCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp ACCATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAACTGTAGATGAGGGCTaGCCGTACAACTTTCTCATG +
Preference number: 4 (lower is better)
Translates to: TIALPALQMPISTIEPLQTVDEG*PYNFLM
Trigger: CATGAGAAAGTTGTACGGCCAGCCCTCATCTACAGT...TTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
3UTR CAA 72 bp TTAGGACTGACTGTCATGTTCACCCATTCTGTGACCTaGAACCCAGTTAGGTCATCTTTCCAGGGCTCCATG +
Preference number: 4 (lower is better)
Translates to: LGLTVMFTHSVT*NPVRSSFQGSM
Trigger: CATGGAGCCCTGGAAAGATGACCTAACTGGGTTCAAGGTCACAGAATGGGTGAACATGACAGTCAGTCCTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR TCA 90 bp CATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAACAAGGAGGTGAATGCTaGTCCTCTTGGTACAGAAGA +
Preference number: 4 (lower is better)
Translates to: HRPSSPPDAHIYNRTTSKQGGEC*SSWYRR
Trigger: TCTTCTGTACCAAGAGGATCAGCATTCACCTCCTTG...TTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR TCA 90 bp CATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAGACTCCATTTGTGAATaGCCTGAATGCCAATGCCTC +
Preference number: 4 (lower is better)
Translates to: HRPSSPPDAHIYNRTTSKDSICE*PECQCL
Trigger: GAGGCATTGGCATTCAGGTCATTCACAAATGGAGTC...TTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR TCA 90 bp ACCATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAGCAGATCTACTCCTTTaGGCTTGTTTCCATGGTACT +
Preference number: 4 (lower is better)
Translates to: TIALPALQMPISTIEPLQADLLL*ACFHGT
Trigger: AGTACCATGGAAACAAGCTCAAAGGAGTAGATCTGC...TTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR GCA 90 bp CTTGCTTCTGGCTTCTTTCACTCAGCACAATACTGTAGAGATCATCCCAGATGTGCCCTGCTGACAGTGTaGCTACGTGCTTCTTTTCCA +
Preference number: 4 (lower is better)
Translates to: LASGFFHSAQYCRDHPRCALLTV*LRASFP
Trigger: TGGAAAAGAAGCACGTAGGCACACTGTCAGCAGGGC...ACATCTGGGATGATCTCTACAGTATTGTGCTGAGTGAAAGAAGCCAGAAGCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CCA 90 bp ACCATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAACAGTAGCAATGTTTTaGGGCACCTTATGGTCACCA +
Preference number: 4 (lower is better)
Translates to: TIALPALQMPISTIEPLQTVAMF*GTLWSP
Trigger: TGGTGACCATAAGGTGCCCCAAAACATTGCTACTGT...TTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp GCACTAGGATACTGTAACCAGGACAAGAGGGTGTTGGCTGTTGATATCAGAACACCAGGCTGGTCAAGATaGACAGAAGAAAGACGAGTG +
Preference number: 4 (lower is better)
Translates to: ALGYCNQDKRVLAVDIRTPGWSR*TEERRV
Trigger: CACTCGTCTTTCTTCTGTCCATCTTGACCAGCCTGG...TGTTCTGATATCAACAGCCAACACCCTCTTGTCCTGGTTACAGTATCCTAGTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CCA 90 bp AATCATGCTAAGTCAGATAAGCCAGACACAAAAGATCACAATCCTGTTTGTGTCGGAGGGGCCTGCGCTTaGGGAGCTGACTCCATTTGT +
Preference number: 4 (lower is better)
Translates to: NHAKSDKPDTKDHNPVCVGGACA*GADSIC
Trigger: ACAAATGGAGTCAGCTCCCCAAGCGCAGGCCCCTCC...GACACAAACAGGATTGTGATCTTTTGTGTCTGGCTTATCTGACTTAGCATGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR TCA 90 bp CATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAACGTACAACTTTCTCATaGTTGGGAAGGGATTTGGAC +
Preference number: 4 (lower is better)
Translates to: HRPSSPPDAHIYNRTTSKRTTFS*LGRDLD
Trigger: GTCCAAATCCCTTCCCAATCATGAGAAAGTTGTACG...TTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR TCA 90 bp GCACTAGGATACTGTAACCAGGACAAGAGGGTGTTGGCTGTTGATATCAGAACAAGTCACATAGGGCTCTaGCGAGATGATGGTTTTGAC +
Preference number: 4 (lower is better)
Translates to: ALGYCNQDKRVLAVDIRTSHIGL*RDDGFD
Trigger: GTCAAAACCATCATCTCGTCAGAGCCCTATGTGACT...TGTTCTGATATCAACAGCCAACACCCTCTTGTCCTGGTTACAGTATCCTAGTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR TCA 90 bp CATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAGGTTCTCATCCAGCATaGTGTCAAAACCAAAGAGCT +
Preference number: 4 (lower is better)
Translates to: HRPSSPPDAHIYNRTTSKGSHPA*CQNQRA
Trigger: AGCTCTTTGGTTTTGACATCATGCTGGATGAGAACC...TTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR TCA 90 bp CATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAATCATCTTCTGTGCAGTaGAGTGCTCTGGAGTCATTT +
Preference number: 4 (lower is better)
Translates to: HRPSSPPDAHIYNRTTSKSSSVQ*SALESF
Trigger: AAATGACTCCAGAGCACTTCACTGCACAGAAGATGA...TTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR GCA 90 bp TGTTTCCAGGCCCAGAGCAAACTAGACATTTGTTGGAGCAGTAATCGGAGGGGTCATTCTCATCATGGCTaGAGCTATCTTCCAAACCAT +
Preference number: 4 (lower is better)
Translates to: CFQAQSKLDICWSSNRRGHSHHG*SYLPNH
Trigger: ATGGTTTGGAAGATAGCTGCAGCCATGATGAGAATG...ACCCCTCCGATTACTGCTCCAACAAATGTCTAGTTTGCTCTGGGCCTGGAAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR GCA 90 bp CCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATACTCTGATTGTTGGGGGTCACTGTaGTCATCTTCCACCGAAGCA +
Preference number: 4 (lower is better)
Translates to: PALQMPISTIEPLQKYSDCWGSL*SSSTEA
Trigger: TGCTTCGGTGGAAGATGAGCACAGTGACCCCCAACA...ATCAGAGTATTTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR GCA 90 bp CTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATACTCTTGCTCTCCCAGGCTTTaGGCAAGAGCTTGGAATCCT +
Preference number: 4 (lower is better)
Translates to: LPALQMPISTIEPLQKYSCSPRL*ARAWNP
Trigger: AGGATTCCAAGCTCTTGCGCAAAGCCTGGGAGAGCA...AGAGTATTTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CCA 90 bp CCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATACTCTGATAAGAGTTCAGGTCCTTaGCTTCCTCAGGCTCCTTCC +
Preference number: 4 (lower is better)
Translates to: PALQMPISTIEPLQKYSDKSSGP*LPQAPS
Trigger: GGAAGGAGCCTGAGGAAGCCAAGGACCTGAACTCTT...ATCAGAGTATTTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR TCA 90 bp TATGGTTTCTCTCAATGTTTTGTGTCACGGGTACACGTGCTCTTTATAAATAACACCGCCTGCTTCTGTTaGGAAGACCCCACTGGAAGC +
Preference number: 4 (lower is better)
Translates to: YGFSQCFVSRVHVLFINNTACFC*EDPTGS
Trigger: GCTTCCAGTGGGGTCTTCTCAACAGAAGCAGGCGGT...GTTATTTATAAAGAGCACGTGTACCCGTGACACAAAACATTGAGAGAAACCATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR TCA 90 bp CTTGCTTCTGGCTTCTTTCACTCAGCACAATACTGTAGAGATCATCCCAGATGTCAAGGAGGTGAATGCTaGTCCTCTTGGTACAGAAGA +
Preference number: 4 (lower is better)
Translates to: LASGFFHSAQYCRDHPRCQGGEC*SSWYRR
Trigger: TCTTCTGTACCAAGAGGATCAGCATTCACCTCCTTG...ACATCTGGGATGATCTCTACAGTATTGTGCTGAGTGAAAGAAGCCAGAAGCAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR TCA 90 bp GCACTAGGATACTGTAACCAGGACAAGAGGGTGTTGGCTGTTGATATCAGAACACGTACAACTTTCTCATaGTTGGGAAGGGATTTGGAC +
Preference number: 4 (lower is better)
Translates to: ALGYCNQDKRVLAVDIRTRTTFS*LGRDLD
Trigger: GTCCAAATCCCTTCCCAATCATGAGAAAGTTGTACG...TGTTCTGATATCAACAGCCAACACCCTCTTGTCCTGGTTACAGTATCCTAGTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR TCA 90 bp CACCCCAGAACACAAAACAGAACTGCCAGTATACTGCTGTGTCTCATCAAGGGGCTGTGTTCTTTTTATTaGCACTGTAGTTGGTCAGGT +
Preference number: 4 (lower is better)
Translates to: HPRTQNRTASILLCLIKGLCSFY*HCSWSG
Trigger: ACCTGACCAACTACAGTGTCAATAAAAAGAACACAG...CCCCTTGATGAGACACAGCAGTATACTGGCAGTTCTGTTTTGTGTTCTGGGGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR TCA 90 bp TGCTGCTCAAGTTTAACCTGCACACATCCTCCTGTGGACTTCAAATGGAGTCTAGGTTCTCATCCAGCATaGTGTCAAAACCAAAGAGCT +
Preference number: 4 (lower is better)
Translates to: CCSSLTCTHPPVDFKWSLGSHPA*CQNQRA
Trigger: AGCTCTTTGGTTTTGACATCATGCTGGATGAGAACC...TAGACTCCATTTGAAGTCCACAGGAGGATGTGTGCAGGTTAAACTTGAGCAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR TCA 90 bp GCACTAGGATACTGTAACCAGGACAAGAGGGTGTTGGCTGTTGATATCAGAACATCATCTTCTGTGCAGTaGAGTGCTCTGGAGTCATTT +
Preference number: 4 (lower is better)
Translates to: ALGYCNQDKRVLAVDIRTSSSVQ*SALESF
Trigger: AAATGACTCCAGAGCACTTCACTGCACAGAAGATGA...TGTTCTGATATCAACAGCCAACACCCTCTTGTCCTGGTTACAGTATCCTAGTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR TCA 90 bp CTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATACTCTCTTAGACTTGGGTGTTaGCCTGTCTTCAGAGGACAG +
Preference number: 4 (lower is better)
Translates to: LPALQMPISTIEPLQKYSLRLGC*PVFRGQ
Trigger: CTGTCCTCTGAAGACAGGTCAACACCCAAGTCTAAG...AGAGTATTTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR TCA 90 bp CCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATACTCTGATCTTAGACTTGGGTGTTaGCCTGTCTTCAGAGGACAG +
Preference number: 4 (lower is better)
Translates to: PALQMPISTIEPLQKYSDLRLGC*PVFRGQ
Trigger: CTGTCCTCTGAAGACAGGTCAACACCCAAGTCTAAG...ATCAGAGTATTTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp CTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATACTCTTTATGGTCACCAGGTTaGGGTACACAGTCCCCAGTA +
Preference number: 4 (lower is better)
Translates to: LPALQMPISTIEPLQKYSLWSPG*GTQSPV
Trigger: TACTGGGGACTGTGTACCCCAACCTGGTGACCATAA...AGAGTATTTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp ACAGTTGTTACCACAACCACAATTAAGACAAAGAATATTCCCATGTGCCTCTTTGTCTCTAGGAGAGCTTaGCAAGCTGGTGCTGGAGCC +
Preference number: 4 (lower is better)
Translates to: TVVTTTTIKTKNIPMCLFVSRRA*QAGAGA
Trigger: GGCTCCAGCACCAGCTTGCCAAGCTCTCCTAGAGAC...AAAGAGGCACATGGGAATATTCTTTGTCTTAATTGTGGTTGTGGTAACAACTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CCA 90 bp ACTTCTCAGATACCAAAGCACACAGGGGTTCAATCCCTTAGGCAACATGGAGCTTACTTCTGTTCCCACTaGGTGGTGAGAATGTTGAAA +
Preference number: 4 (lower is better)
Translates to: TSQIPKHTGVQSLRQHGAYFCSH*VVRMLK
Trigger: TTTCAACATTCTCACCACCCAGTGGGAACAGAAGTA...AGCTCCATGTTGCCTAAGGGATTGAACCCCTGTGTGCTTTGGTATCTGAGAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CAA 72 bp GCCTTTATCATTAAGCAGGAAGCACGGCTTAGGACTTaGCTATCCAGCTTTCTTCACAACTGTCAACACAGC +
Preference number: 4 (lower is better)
Translates to: AFIIKQEARLRT*LSSFLHNCQHS
Trigger: GCTGTGTTGACAGTTGTGAAGAAAGCTGGATAGCAAAGTCCTAAGCCGTGCTTCCTGCTTAATGATAAAGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR TCA 90 bp CAAACCAAAAGTTTCAAGGGTTGGAGAGATGGCCTAGTGGTTAAGAGCATGGATATCCTAAAGTTACTCTaGCTGCACTGGGAAGAGGTA +
Preference number: 4 (lower is better)
Translates to: QTKSFKGWRDGLVVKSMDILKLL*LHWEEV
Trigger: TACCTCTTCCCAGTGCAGTCAGAGTAACTTTAGGAT...ATCCATGCTCTTAACCACTAGGCCATCTCTCCAACCCTTGAAACTTTTGGTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR TCA 90 bp ACAGTTGTTACCACAACCACAATTAAGACAAAGAATATTCCCATGTGCCTCTTTGACCGATGGTCTGCTTaGCAATGTTGGGGGTCACTG +
Preference number: 4 (lower is better)
Translates to: TVVTTTTIKTKNIPMCLFDRWSA*QCWGSL
Trigger: CAGTGACCCCCAACATTGTCAAGCAGACCATCGGTC...AAAGAGGCACATGGGAATATTCTTTGTCTTAATTGTGGTTGTGGTAACAACTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR TCA 90 bp CTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATACTCTAGTCACATAGGGCTCTaGCGAGATGATGGTTTTGAC +
Preference number: 4 (lower is better)
Translates to: LPALQMPISTIEPLQKYSSHIGL*RDDGFD
Trigger: GTCAAAACCATCATCTCGTCAGAGCCCTATGTGACT...AGAGTATTTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR GCA 90 bp CTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATACTCTCCACAAAGCTTTCAATaGCCATTTGTGCCCTTGGCA +
Preference number: 4 (lower is better)
Translates to: LPALQMPISTIEPLQKYSPQSFQ*PFVPLA
Trigger: TGCCAAGGGCACAAATGGGCATTGAAAGCTTTGTGG...AGAGTATTTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp CCCAGATGTGGCATTGGTTTTTCCTTGCAGATGTTTAGACAGTATCTACTAAATGACCCCACTGGAAGCTaGGGTTCACAAAACAAGCCT +
Preference number: 4 (lower is better)
Translates to: PRCGIGFSLQMFRQYLLNDPTGS*GSQNKP
Trigger: AGGCTTGTTTTGTGAACCCCAGCTTCCAGTGGGGTC...ATTTAGTAGATACTGTCTAAACATCTGCAAGGAAAAACCAATGCCACATCTGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CCA 90 bp AAACACAATTTAATCCCCGTTACTACAGCTAAGAAACTGATATCCCTGGTTACTGCTACACCAAGAGGCTaGAGGGAAGAAGGGGGAACA +
Preference number: 4 (lower is better)
Translates to: KHNLIPVTTAKKLISLVTATPRG*REEGGT
Trigger: TGTTCCCCCTTCTTCCCTCCAGCCTCTTGGTGTAGC...AGTAACCAGGGATATCAGTTTCTTAGCTGTAGTAACGGGGATTAAATTGTGTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CCA 90 bp AATCATGCTAAGTCAGATAAGCCAGACACAAAAGATCACAATCCTGTTTGTGTCAAGAGTTCAGGTCCTTaGCTTCCTCAGGCTCCTTCC +
Preference number: 4 (lower is better)
Translates to: NHAKSDKPDTKDHNPVCVKSSGP*LPQAPS
Trigger: GGAAGGAGCCTGAGGAAGCCAAGGACCTGAACTCTT...GACACAAACAGGATTGTGATCTTTTGTGTCTGGCTTATCTGACTTAGCATGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CCA 90 bp CATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAACAACTTTCTCATGATTaGGAAGGGATTTGGACATCA +
Preference number: 4 (lower is better)
Translates to: HRPSSPPDAHIYNRTTSKQLSHD*EGIWTS
Trigger: TGATGTCCAAATCCCTTCCCAATCATGAGAAAGTTG...TTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp AATCATGCTAAGTCAGATAAGCCAGACACAAAAGATCACAATCCTGTTTGTGTCGCCCATTTGTGCCCTTaGCATGCAGTCTCATCAGCA +
Preference number: 4 (lower is better)
Translates to: NHAKSDKPDTKDHNPVCVAHLCP*HAVSSA
Trigger: TGCTGATGAGACTGCATGCCAAGGGCACAAATGGGC...GACACAAACAGGATTGTGATCTTTTGTGTCTGGCTTATCTGACTTAGCATGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CAA 72 bp TTTTCCAGTACAGCTTGGACTCTCCACTGTCTGACTTaGAAGCCTTTATCATTAAGCAGGAAGCACGGCTTA +
Preference number: 4 (lower is better)
Translates to: FSSTAWTLHCLT*KPLSLSRKHGL
Trigger: TAAGCCGTGCTTCCTGCTTAATGATAAAGGCTTCAAAGTCAGACAGTGGAGAGTCCAAGCTGTACTGGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR TCA 90 bp CCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATACTCTGATTGCTATTTGGCCTCATaGAGGAGTTGTTGTTCAGCA +
Preference number: 4 (lower is better)
Translates to: PALQMPISTIEPLQKYSDCYLAS*RSCCSA
Trigger: TGCTGAACAACAACTCCTTCATGAGGCCAAATAGCA...ATCAGAGTATTTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR TCA 90 bp ACTGTGGAAAAGAAGGAGTTTCCTCAGATACTGAAAACTAGAACTACCATACAGTGTGAGGCAAGGAGGTaGATGCTGATCCTCTTGGTA +
Preference number: 4 (lower is better)
Translates to: TVEKKEFPQILKTRTTIQCEARR*MLILLV
Trigger: TACCAAGAGGATCAGCATTCACCTCCTTGCCTCACA...CTGTATGGTAGTTCTAGTTTTCAGTATCTGAGGAAACTCCTTCTTTTCCACAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR TCA 90 bp CTTGCTTCTGGCTTCTTTCACTCAGCACAATACTGTAGAGATCATCCCAGATGTACTGAGGAAAGAAACTaGACTCCTTCTTGCCAAAAC +
Preference number: 4 (lower is better)
Translates to: LASGFFHSAQYCRDHPRCTEERN*TPSCQN
Trigger: GTTTTGGCAAGAAGGAGTTCAGTTTCTTTCCTCAGT...ACATCTGGGATGATCTCTACAGTATTGTGCTGAGTGAAAGAAGCCAGAAGCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR TCA 90 bp CTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATACTCTGCAGATCTACTCCTTTaGGCTTGTTTCCATGGTACT +
Preference number: 4 (lower is better)
Translates to: LPALQMPISTIEPLQKYSADLLL*ACFHGT
Trigger: AGTACCATGGAAACAAGCTCAAAGGAGTAGATCTGC...AGAGTATTTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR GCA 90 bp AATCATGCTAAGTCAGATAAGCCAGACACAAAAGATCACAATCCTGTTTGTGTCCAGGCCACAGGGATGTaGCTCCATCCTAAAGTTACT +
Preference number: 4 (lower is better)
Translates to: NHAKSDKPDTKDHNPVCVQATGM*LHPKVT
Trigger: AGTAACTTTAGGATGGAGGCACATCCCTGTGGCCTG...GACACAAACAGGATTGTGATCTTTTGTGTCTGGCTTATCTGACTTAGCATGATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CCA 90 bp CTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATACTCTTTCCAGTTGCTGGTATaGTTTTTGCCTCACGTTGGT +
Preference number: 4 (lower is better)
Translates to: LPALQMPISTIEPLQKYSFQLLV*FLPHVG
Trigger: ACCAACGTGAGGCAAAAACCATACCAGCAACTGGAA...AGAGTATTTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CCA 90 bp TGTTTCCAGGCCCAGAGCAAACTAGACATTTGTTGGAGCAGTAATCGGAGGGGTTCATCAGCATTAGCCTaGTATTCTGTGTTCTTTTTA +
Preference number: 4 (lower is better)
Translates to: CFQAQSKLDICWSSNRRGSSALA*YSVFFL
Trigger: TAAAAAGAACACAGAATACCAGGCTAATGCTGATGA...ACCCCTCCGATTACTGCTCCAACAAATGTCTAGTTTGCTCTGGGCCTGGAAACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR GCA 90 bp CCCAGATGTGGCATTGGTTTTTCCTTGCAGATGTTTAGACAGTATCTACTAAATGAAAGTCTGGAACTCTaGCCAGAGTACTTGAGGACA +
Preference number: 4 (lower is better)
Translates to: PRCGIGFSLQMFRQYLLNESLEL*PEYLRT
Trigger: TGTCCTCAAGTACTCTGGGCAGAGTTCCAGACTTTC...ATTTAGTAGATACTGTCTAAACATCTGCAAGGAAAAACCAATGCCACATCTGGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CCA 90 bp GAGAAGTGGAAATCACTGTGTGGATTAGCCCAAGAAAGTTCTTTGGCTATGGTCCAACTTTCTCATGATTaGGAAGGGATTTGGACATCA +
Preference number: 4 (lower is better)
Translates to: EKWKSLCGLAQESSLAMVQLSHD*EGIWTS
Trigger: TGATGTCCAAATCCCTTCCCAATCATGAGAAAGTTG...GACCATAGCCAAAGAACTTTCTTGGGCTAATCCACACAGTGATTTCCACTTCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CCA 90 bp ACAGTTGTTACCACAACCACAATTAAGACAAAGAATATTCCCATGTGCCTCTTTAACCCGAACATCATCTaGTGTCAAGACGTCCAGCAC +
Preference number: 4 (lower is better)
Translates to: TVVTTTTIKTKNIPMCLFNPNII*CQDVQH
Trigger: GTGCTGGACGTCTTGACACCAGATGATGTTCGGGTT...AAAGAGGCACATGGGAATATTCTTTGTCTTAATTGTGGTTGTGGTAACAACTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CAA 72 bp CCAAAGGGATCTGACCTCTCTGGCCTCCGAGGACAGTaGCACACACAAATTAAAAATGAATGTATTCTTAAA +
Preference number: 4 (lower is better)
Translates to: PKGSDLSGLRGQ*HTQIKNECILK
Trigger: TTTAAGAATACATTCATTTTTAATTTGTGTGTGCAACTGTCCTCGGAGGCCAGAGAGGTCAGATCCCTTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR TCA 90 bp ACAGTTGTTACCACAACCACAATTAAGACAAAGAATATTCCCATGTGCCTCTTTGTTCTCATTGCTCCTTaGGGACAAAGTCTTCCTGGA +
Preference number: 4 (lower is better)
Translates to: TVVTTTTIKTKNIPMCLFVLIAP*GQSLPG
Trigger: TCCAGGAAGACTTTGTCCTCAAGGAGCAATGAGAAC...AAAGAGGCACATGGGAATATTCTTTGTCTTAATTGTGGTTGTGGTAACAACTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CCA 90 bp CCCAGATGTGGCATTGGTTTTTCCTTGCAGATGTTTAGACAGTATCTACTAAATTTCCAGTTGCTGGTATaGTTTTTGCCTCACGTTGGT +
Preference number: 4 (lower is better)
Translates to: PRCGIGFSLQMFRQYLLNFQLLV*FLPHVG
Trigger: ACCAACGTGAGGCAAAAACCATACCAGCAACTGGAA...ATTTAGTAGATACTGTCTAAACATCTGCAAGGAAAAACCAATGCCACATCTGGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CCA 90 bp CCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATACTCTGATTCTTCATTCTCATCATaGCTGCAGCTATCTTCCAAA +
Preference number: 4 (lower is better)
Translates to: PALQMPISTIEPLQKYSDSSFSS*LQLSSK
Trigger: TTTGGAAGATAGCTGCAGCCATGATGAGAATGAAGA...ATCAGAGTATTTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR GCA 90 bp CCCAGATGTGGCATTGGTTTTTCCTTGCAGATGTTTAGACAGTATCTACTAAATCAGAAAGATTCCAGTTaGTGGTATGGTTTTTGCCTC +
Preference number: 4 (lower is better)
Translates to: PRCGIGFSLQMFRQYLLNQKDSS*WYGFCL
Trigger: GAGGCAAAAACCATACCAGCAACTGGAATCTTTCTG...ATTTAGTAGATACTGTCTAAACATCTGCAAGGAAAAACCAATGCCACATCTGGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CCA 90 bp ACTGTGGAAAAGAAGGAGTTTCCTCAGATACTGAAAACTAGAACTACCATACAGAAAGATTCCAGTTGCTaGTATGGTTTTTGCCTCACG +
Preference number: 4 (lower is better)
Translates to: TVEKKEFPQILKTRTTIQKDSSC*YGFCLT
Trigger: CGTGAGGCAAAAACCATACCAGCAACTGGAATCTTT...CTGTATGGTAGTTCTAGTTTTCAGTATCTGAGGAAACTCCTTCTTTTCCACAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CAA 72 bp ATAAATAACTGCAAGGGTTCAATTGTGACCAACATCTaGTGCTCACACAAGTTACTGCAATGGCTTTGTCCA +
Preference number: 4 (lower is better)
Translates to: INNCKGSIVTNI*CSHKLLQWLCP
Trigger: TGGACAAAGCCATTGCAGTAACTTGTGTGAGCACAAGATGTTGGTCACAATTGAACCCTTGCAGTTATTTAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CCA 90 bp AATCATGCTAAGTCAGATAAGCCAGACACAAAAGATCACAATCCTGTTTGTGTCTCTTCATTCTCATCATaGCTGCAGCTATCTTCCAAA +
Preference number: 4 (lower is better)
Translates to: NHAKSDKPDTKDHNPVCVSSFSS*LQLSSK
Trigger: TTTGGAAGATAGCTGCAGCCATGATGAGAATGAAGA...GACACAAACAGGATTGTGATCTTTTGTGTCTGGCTTATCTGACTTAGCATGATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CCA 90 bp CTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATACTCTTCATCAGCATTAGCCTaGTATTCTGTGTTCTTTTTA +
Preference number: 4 (lower is better)
Translates to: LPALQMPISTIEPLQKYSSSALA*YSVFFL
Trigger: TAAAAAGAACACAGAATACCAGGCTAATGCTGATGA...AGAGTATTTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
3UTR CAA 72 bp CTAGACACTCTTGTTATTCTTTGCCAATCAAGGCTCTaGGGAGAACCAAACTATCACTTCACACACATTTAT +
Preference number: 4 (lower is better)
Translates to: LDTLVILCQSRL*GEPNYHFTHIY
Trigger: ATAAATGTGTGTGAAGTGATAGTTTGGTTCTCCCAAGAGCCTTGATTGGCAAAGAATAACAAGAGTGTCTAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CAA 72 bp TTGTTTCATTTTCTAGACTGGAATCTGCATATAGGCTaGCTTCTGGCTTCTTTCACTCAGCACAATACTGTA +
Preference number: 4 (lower is better)
Translates to: LFHFLDWNLHIG*LLASFTQHNTV
Trigger: TACAGTATTGTGCTGAGTGAAAGAAGCCAGAAGCAAGCCTATATGCAGATTCCAGTCTAGAAAATGAAACAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CAA 72 bp TGTAGAGATCATCCCAGATGTGGCATTGGTTTTTCCTaGCAGATGTTTAGACAGTATCTACTAAATAATTTG +
Preference number: 4 (lower is better)
Translates to: CRDHPRCGIGFS*QMFRQYLLNNL
Trigger: CAAATTATTTAGTAGATACTGTCTAAACATCTGCAAGGAAAAACCAATGCCACATCTGGGATGATCTCTACA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
3UTR CAA 72 bp AACAGGACAATTTTGAGGTCGGCCAACTATATACAGTaGTTACCACAACCACAATTAAGACAAAGAATATTC +
Preference number: 4 (lower is better)
Translates to: NRTILRSANYIQ*LPQPQLRQRIF
Trigger: GAATATTCTTTGTCTTAATTGTGGTTGTGGTAACAACTGTATATAGTTGGCCGACCTCAAAATTGTCCTGTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CAA 90 bp TCTGATGAGGGGCAAAGTGGAGGCGGGGTAGAGGCTCAGGCTGGTCAGCAGGCTCAGGCAGGGCTGGGATaGAGCCCATGGACATGTGAG +
Preference number: 5 (lower is better)
Translates to: SDEGQSGGGVEAQAGQQAQAGLG*SPWTCE
Trigger: CTCACATGTCCATGGGCTCAATCCCAGCCCTGCCTG...AGCCTGCTGACCAGCCTGAGCCTCTACCCCGCCTCCACTTTGCCCCTCATCAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp TACTCTGATGAGGGGCAAAGTGGAGGCGGGGTAGAGGCTCAGGCTGGTCAGCAGCCCGGGGTAGAGCGCTaGGACTGTTTGCTGGTGTTC +
Preference number: 5 (lower is better)
Translates to: YSDEGQSGGGVEAQAGQQPGVER*DCLLVF
Trigger: GAACACCAGCAAACAGTCCAAGCGCTCTACCCCGGG...CTGCTGACCAGCCTGAGCCTCTACCCCGCCTCCACTTTGCCCCTCATCAGAGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS GCA 90 bp CTCGAGCAGATGCTGGTGGCTTCACAATCCACTTCTGGCGGCTGCTaGTCTCCCAGGCTTTGCGCAAGAGCTTGGAATCCTGGGGCAGGA +
Preference number: 5 (lower is better)
Translates to: LEQMLVASQSTSGGC*SPRLCARAWNPGAG
Trigger: TCCTGCCCCAGGATTCCAAGCTCTTGCGCAAAGCCTGGGAGAGCAGCAGCCGCCAGAAGTGGATTGTGAAGCCACCAGCATCTGCTCGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS GCA 90 bp TGCCTCGAGCAGATGCTGGTGGCTTCACAATCCACTTCTGGCGGCTaGTGCTCTCCCAGGCTTTGCGCAAGAGCTTGGAATCCTGGGGCA +
Preference number: 5 (lower is better)
Translates to: CLEQMLVASQSTSGG*CSPRLCARAWNPGA
Trigger: TGCCCCAGGATTCCAAGCTCTTGCGCAAAGCCTGGGAGAGCAGCAGCCGCCAGAAGTGGATTGTGAAGCCACCAGCATCTGCTCGAGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS CCA 90 bp TGGAGGGAAGAAGGGGGAACAGGAGCTCTGTCTTCTCCAAGTACCTaGGGGTCAACTGCAGACCCACAGGCAGGGCTGGGATTGAGCCCA +
Preference number: 5 (lower is better)
Translates to: WREEGGTGALSSPST*GSTADPQAGLGLSP
Trigger: TGGGCTCAATCCCAGCCCTGCCTGTGGGTCTGCAGTTGACCCCCAGGTACTTGGAGAAGACAGAGCTCCTGTTCCCCCTTCTTCCCTCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp GTAGAGGCTCAGGCTGGTCAGCAGGCTGGTTCCCTTGAGGTAGCTGAGTGCTCCCGACCGATGGTCTGCTaGACAATGTTGGGGGTCACT +
Preference number: 5 (lower is better)
Translates to: VEAQAGQQAGSLEVAECSRPMVC*TMLGVT
Trigger: AGTGACCCCCAACATTGTCAAGCAGACCATCGGTCG...GGAGCACTCAGCTACCTCAAGGGAACCAGCCTGCTGACCAGCCTGAGCCTCTAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp CCAAGTCTGGTGGACTCCAGGCAACTAGTGGGCTGGTCAGTGTTGGCCTGTTTCCCCGGGGTAGAGCGCTaGGACTGTTTGCTGGTGTTC +
Preference number: 5 (lower is better)
Translates to: PSLVDSRQLVGWSVLACFPGVER*DCLLVF
Trigger: GAACACCAGCAAACAGTCCAAGCGCTCTACCCCGGG...GAAACAGGCCAACACTGACCAGCCCACTAGTTGCCTGGAGTCCACCAGACTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CAA 90 bp CCAGACAGTAAGGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATAGGCCAGGCTCTTCCTaGAAGGGTTCTCCCCAGCTG +
Preference number: 5 (lower is better)
Translates to: PDSKVTEGEPSSPSPHHHRPGSS*KGSPQL
Trigger: CAGCTGGGGAGAACCCTTCAAGGAAGAGCCTGGCCT...ATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACCTTACTGTCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp GGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATCGCCCTTCCAGGCTTTCAATGCCCATTaGTGCCCTTGGCATGCAGTC +
Preference number: 5 (lower is better)
Translates to: GDRGRTFLTFSPSPSPFQAFNAH*CPWHAV
Trigger: GACTGCATGCCAAGGGCACAAATGGGCATTGAAAGC...CTGGAAGGGCGATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp GGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATCGCCCTTCCAGGAGCGCTTGGACTGTTaGCTGGTGTTCTCATTGCTC +
Preference number: 5 (lower is better)
Translates to: GDRGRTFLTFSPSPSPFQERLDC*LVFSLL
Trigger: GAGCAATGAGAACACCAGCAAACAGTCCAAGCGCTC...CTGGAAGGGCGATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS TCA 90 bp CAGGCAGGGCTGGGATTGAGCCCATGGACATGTGAGGCAAGGAGGTaGATGCTGATCCTCTTGGTACAGAAGACTGTGCTGTCCAACCCC +
Preference number: 5 (lower is better)
Translates to: QAGLGLSPWTCEARR*MLILLVQKTVLSNP
Trigger: GGGGTTGGACAGCACAGTCTTCTGTACCAAGAGGATCAGCATTCACCTCCTTGCCTCACATGTCCATGGGCTCAATCCCAGCCCTGCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CCA 90 bp CAGGCTCCTTCCCAGGCTGGTCAAGATGGACAGAAGAAAGACGAGTaGCCACTTCAGCTACACCAAGAGGCTGGAGGGAAGAAGGGGGAA +
Preference number: 5 (lower is better)
Translates to: QAPSQAGQDGQKKDE*PLQLHQEAGGKKGE
Trigger: TTCCCCCTTCTTCCCTCCAGCCTCTTGGTGTAGCTGAAGTGGCCACTCGTCTTTCTTCTGTCCATCTTGACCAGCCTGGGAAGGAGCCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp GTAGAGGCTCAGGCTGGTCAGCAGGCTGGTTCCCTTGAGGTAGCTGAGTGCTCCTTTCCAGTTTCCAGATaGGCTTCACCTGCTGATGGG +
Preference number: 5 (lower is better)
Translates to: VEAQAGQQAGSLEVAECSFPVSR*ASPADG
Trigger: CCCATCAGCAGGTGAAGCCAATCTGGAAACTGGAAA...GGAGCACTCAGCTACCTCAAGGGAACCAGCCTGCTGACCAGCCTGAGCCTCTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp GTAGAGGCTCAGGCTGGTCAGCAGGCTGGTTCCCTTGAGGTAGCTGAGTGCTCCGGCCTCATGAAGGAGTaGTTGTTCAGCATGGGCTTA +
Preference number: 5 (lower is better)
Translates to: VEAQAGQQAGSLEVAECSGLMKE*LFSMGL
Trigger: TAAGCCCATGCTGAACAACAACTCCTTCATGAGGCC...GGAGCACTCAGCTACCTCAAGGGAACCAGCCTGCTGACCAGCCTGAGCCTCTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp GGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATCGCCCTTCCAGGACAGTAGCAATGTTTaGGGGCACCTTATGGTCACC +
Preference number: 5 (lower is better)
Translates to: GDRGRTFLTFSPSPSPFQDSSNV*GHLMVT
Trigger: GGTGACCATAAGGTGCCCCAAAACATTGCTACTGTC...CTGGAAGGGCGATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp GGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATCGCCCTTCCAGATGTCCAGAGGAGAGTaGGAATGGAGGCTTGGAGAA +
Preference number: 5 (lower is better)
Translates to: GDRGRTFLTFSPSPSPFQMSRGE*EWRLGE
Trigger: TTCTCCAAGCCTCCATTCCAACTCTCCTCTGGACAT...CTGGAAGGGCGATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp GTAGAGGCTCAGGCTGGTCAGCAGGCTGGTTCCCTTGAGGTAGCTGAGTGCTCCCTCTTCTTTCGTGACTaGCTGGCGGAATTTGGTGTC +
Preference number: 5 (lower is better)
Translates to: VEAQAGQQAGSLEVAECSLFFRD*LAEFGV
Trigger: GACACCAAATTCCGCCAGCAAGTCACGAAAGAAGAG...GGAGCACTCAGCTACCTCAAGGGAACCAGCCTGCTGACCAGCCTGAGCCTCTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp TCTGATGAGGGGCAAAGTGGAGGCGGGGTAGAGGCTCAGGCTGGTCAGCAGGCTTTGCTGGTGTTCTCATaGCTCCTTGAGGACAAAGTC +
Preference number: 5 (lower is better)
Translates to: SDEGQSGGGVEAQAGQQALLVFS*LLEDKV
Trigger: GACTTTGTCCTCAAGGAGCAATGAGAACACCAGCAA...AGCCTGCTGACCAGCCTGAGCCTCTACCCCGCCTCCACTTTGCCCCTCATCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS GCA 90 bp GGCAAAGGAAATAGGCTGGCTGGGATGGGACTCCCAAGAAACTGGTaGCCAGCCCTGCTGACAGTGTGCCTACGTGCTTCTTTTCCAGTT +
Preference number: 5 (lower is better)
Translates to: GKGNRLAGMGLPRNW*PALLTVCLRASFPV
Trigger: AACTGGAAAAGAAGCACGTAGGCACACTGTCAGCAGGGCTGGGCACCAGTTTCTTGGGAGTCCCATCCCAGCCAGCCTATTTCCTTTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp CCCATCACCATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCAGAGGGATGTCTCTGCTaGAAGCTGTTTCCTCGGCGC +
Preference number: 5 (lower is better)
Translates to: PITIALPALQMPISTIEPEGCLC*KLFPRR
Trigger: GCGCCGAGGAAACAGCTTCAAGCAGAGACATCCCTC...TGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATGGTGATGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp TACTCTGATGAGGGGCAAAGTGGAGGCGGGGTAGAGGCTCAGGCTGGTCAGCAGGAAGATGTGGCTTTATaGGCAGTGACACTGACAGGA +
Preference number: 5 (lower is better)
Translates to: YSDEGQSGGGVEAQAGQQEDVAL*AVTLTG
Trigger: TCCTGTCAGTGTCACTGCCAATAAAGCCACATCTTC...CTGCTGACCAGCCTGAGCCTCTACCCCGCCTCCACTTTGCCCCTCATCAGAGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp GGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATCGCCCTTCCAGTGGGTGGTGAGAATGTaGAAATATCGTGGCTGCTCA +
Preference number: 5 (lower is better)
Translates to: GDRGRTFLTFSPSPSPFQWVVRM*KYRGCS
Trigger: TGAGCAGCCACGATATTTCAACATTCTCACCACCCA...CTGGAAGGGCGATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp GGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATCGCCCTTCCAGTTGCTGGTGTTCTCATaGCTCCTTGAGGACAAAGTC +
Preference number: 5 (lower is better)
Translates to: GDRGRTFLTFSPSPSPFQLLVFS*LLEDKV
Trigger: GACTTTGTCCTCAAGGAGCAATGAGAACACCAGCAA...CTGGAAGGGCGATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS TCA 90 bp GTTTCCAGATTGGCTTCACCTGCTGATGGGCCTGAGACCAGACTTTaGCCTCCGAGGGTTTCTCAGATGGTGAAGCAGACACTGTGCCTG +
Preference number: 5 (lower is better)
Translates to: VSRLASPADGPETRL*PPRVSQMVKQTLCL
Trigger: CAGGCACAGTGTCTGCTTCACCATCTGAGAAACCCTCGGAGGTCAAAGTCTGGTCTCAGGCCCATCAGCAGGTGAAGCCAATCTGGAAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS TCA 90 bp AACTGCAGACCCACAGGCAGGGCTGGGATTGAGCCCATGGACATGTaGGGCAAGGAGGTGAATGCTGATCCTCTTGGTACAGAAGACTGT +
Preference number: 5 (lower is better)
Translates to: NCRPTGRAGIEPMDM*GKEVNADPLGTEDC
Trigger: ACAGTCTTCTGTACCAAGAGGATCAGCATTCACCTCCTTGCCTCACATGTCCATGGGCTCAATCCCAGCCCTGCCTGTGGGTCTGCAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CCA 90 bp TGGACAGAAGAAAGACGAGTGGCCACTTCAGCTACACCAAGAGGCTaGAGGGAAGAAGGGGGAACAGGAGCTCTGTCTTCTCCAAGTACC +
Preference number: 5 (lower is better)
Translates to: WTEERRVATSATPRG*REEGGTGALSSPST
Trigger: GGTACTTGGAGAAGACAGAGCTCCTGTTCCCCCTTCTTCCCTCCAGCCTCTTGGTGTAGCTGAAGTGGCCACTCGTCTTTCTTCTGTCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp TACTCTGATGAGGGGCAAAGTGGAGGCGGGGTAGAGGCTCAGGCTGGTCAGCAGGCAGAAAGATTCCAGTaGCTGGTATGGTTTTTGCCT +
Preference number: 5 (lower is better)
Translates to: YSDEGQSGGGVEAQAGQQAERFQ*LVWFLP
Trigger: AGGCAAAAACCATACCAGCAACTGGAATCTTTCTGC...CTGCTGACCAGCCTGAGCCTCTACCCCGCCTCCACTTTGCCCCTCATCAGAGTA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp GGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATCGCCCTTCCAGTTTCTCTTGCTGATTTaGAAGTGTGACCGACCGATG +
Preference number: 5 (lower is better)
Translates to: GDRGRTFLTFSPSPSPFQFLLLI*KCDRPM
Trigger: CATCGGTCGGTCACACTTCAAAATCAGCAAGAGAAA...CTGGAAGGGCGATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp GTAGAGGCTCAGGCTGGTCAGCAGGCTGGTTCCCTTGAGGTAGCTGAGTGCTCCGTGCTCTGGAGTCATTaGACATTTGTCTCTAGGAGA +
Preference number: 5 (lower is better)
Translates to: VEAQAGQQAGSLEVAECSVLWSH*TFVSRR
Trigger: TCTCCTAGAGACAAATGTCAAATGACTCCAGAGCAC...GGAGCACTCAGCTACCTCAAGGGAACCAGCCTGCTGACCAGCCTGAGCCTCTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp CCCATCACCATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCAGGGAGACAGGCCAGCTaGACTCTTCTTAGACTTGGG +
Preference number: 5 (lower is better)
Translates to: PITIALPALQMPISTIEPGRQAS*TLLRLG
Trigger: CCCAAGTCTAAGAAGAGTCAAGCTGGCCTGTCTCCC...TGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATGGTGATGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS TCA 90 bp TCTCAGATGGTGAAGCAGACACTGTGCCTGAGGGATGTCTCTGCTTaGAGCTGTTTCCTCGGCGCAGGCCAATACTGTAGTGCTCTGTTC +
Preference number: 5 (lower is better)
Translates to: SQMVKQTLCLRDVSA*SCFLGAGQYCSALF
Trigger: GAACAGAGCACTACAGTATTGGCCTGCGCCGAGGAAACAGCTTCAAGCAGAGACATCCCTCAGGCACAGTGTCTGCTTCACCATCTGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS TCA 90 bp TCTGAAGTACCAGGAAGGATCGCACTGTCTAATCCAATATCCTCCTaGGGAAACCGCTGGCCCATCAGAGGTTTCCACCGCCTGCTTCTG +
Preference number: 5 (lower is better)
Translates to: SEVPGRIALSNPISS*GNRWPIRGFHRLLL
Trigger: CAGAAGCAGGCGGTGGAAACCTCTGATGGGCCAGCGGTTTCCTCAGGAGGATATTGGATTAGACAGTGCGATCCTTCCTGGTACTTCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS TCA 90 bp GGATATGGGAGACAGGCCAGCTTGACTCTTCTTAGACTTGGGTGTTaGCCTGTCTTCAGAGGACAGTGTGGTTCCCTCAGAGGCGCTCTT +
Preference number: 5 (lower is better)
Translates to: GYGRQASLTLLRLGC*PVFRGQCGSLRGAL
Trigger: AAGAGCGCCTCTGAGGGAACCACACTGTCCTCTGAAGACAGGTCAACACCCAAGTCTAAGAAGAGTCAAGCTGGCCTGTCTCCCATATCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS TCA 90 bp CGGGGTAGAGCGCTTGGACTGTTTGCTGGTGTTCTCATTGCTCCTTaGGGACAAAGTCTTCCTGGATATGGGAGACAGGCCAGCTTGACT +
Preference number: 5 (lower is better)
Translates to: RGRALGLFAGVLIAP*GQSLPGYGRQASLT
Trigger: AGTCAAGCTGGCCTGTCTCCCATATCCAGGAAGACTTTGTCCTCAAGGAGCAATGAGAACACCAGCAAACAGTCCAAGCGCTCTACCCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS TCA 90 bp CAGAAGAAAGACGAGTGGCCACTTCAGCTACACCAAGAGGTTGTGTaGAGTCTCCCGAGTTTCCAGGGCACTCTTCCTCTTCCCAACCAC +
Preference number: 5 (lower is better)
Translates to: QKKDEWPLQLHQEVV*SLPSFQGTLPLPNH
Trigger: GTGGTTGGGAAGAGGAAGAGTGCCCTGGAAACTCGGGAGACTTCACACAACCTCTTGGTGTAGCTGAAGTGGCCACTCGTCTTTCTTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129890.8
CDS-3UTR CAA 90 bp CCAGACAGTAAGGTGACAGAGGGCGAACCTTCCTCACCTTCTCCCCATCACCATGGCCTCATGAAGGAGTaGTTGTTCAGCATGGGCTTA +
Preference number: 5 (lower is better)
Translates to: PDSKVTEGEPSSPSPHHHGLMKE*LFSMGL
Trigger: TAAGCCCATGCTGAACAACAACTCCTTCATGAGGCC...ATGGTGATGGGGAGAAGGTGAGGAAGGTTCGCCCTCTGTCACCTTACTGTCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp CCAGGAGGCCAGGAAATGGGTGTAGCCTGTCATGGTTTCTTCTTGCTTGTCTTTCACCGCCTGCTTCTGTaGAGAAGACCCCACTGGAAG +
Preference number: 5 (lower is better)
Translates to: PGGQEMGVACHGFFLLVFHRLLL*RRPHWK
Trigger: CTTCCAGTGGGGTCTTCTCAACAGAAGCAGGCGGTG...AAAGACAAGCAAGAAGAAACCATGACAGGCTACACCCATTTCCTGGCCTCCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CAA 90 bp CCAAGTCTGGTGGACTCCAGGCAACTAGTGGGCTGGTCAGTGTTGGCCTGTTTCTGGGTGGTGAGAATGTaGAAATATCGTGGCTGCTCA +
Preference number: 5 (lower is better)
Translates to: PSLVDSRQLVGWSVLACFWVVRM*KYRGCS
Trigger: TGAGCAGCCACGATATTTCAACATTCTCACCACCCA...GAAACAGGCCAACACTGACCAGCCCACTAGTTGCCTGGAGTCCACCAGACTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS GCA 90 bp GGGCTGGAACGCAAGCAGAAAGATTCCAGTTGCTGGTATGGTTTTTaGCTCACGTTGGTGCGGCGGTACAGCAGAGTATTGCTGAACAAG +
Preference number: 5 (lower is better)
Translates to: GLERKQKDSSCWYGF*LTLVRRYSRVLLNK
Trigger: CTTGTTCAGCAATACTCTGCTGTACCGCCGCACCAACGTGAGGCAAAAACCATACCAGCAACTGGAATCTTTCTGCTTGCGTTCCAGCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS GCA 90 bp AGTAGCACTCTGGGAATCCGGGTTTTCATCCAGGCCACAGGGATGTaGCTCCATCCTAAAGTTACTCTGACTGCACTGGGAAGAGGTAAC +
Preference number: 5 (lower is better)
Translates to: SSTLGIRVFIQATGM*LHPKVTLTALGRGN
Trigger: GTTACCTCTTCCCAGTGCAGTCAGAGTAACTTTAGGATGGAGGCACATCCCTGTGGCCTGGATGAAAACCCGGATTCCCAGAGTGCTACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CCA 90 bp AACTTCCTCACAGCCTCAGTGAAGTGTACCTCTTTAGTAGCACTCTaGGAATCCGGGTTTTCATCCAGGCCACAGGGATGTGCCTCCATC +
Preference number: 5 (lower is better)
Translates to: NFLTASVKCTSLVAL*ESGFSSRPQGCASI
Trigger: GATGGAGGCACATCCCTGTGGCCTGGATGAAAACCCGGATTCCCAGAGTGCTACTAAAGAGGTACACTTCACTGAGGCTGTGAGGAAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CCA 90 bp TTGGGCAGAACAAAGCCAGCCAGGTTCAGAAGGTCTCGGATCATCTaGCCTTTGATGCTGATGTCCAGAGGAGAGTTGGAATGGAGGCTT +
Preference number: 5 (lower is better)
Translates to: LGRTKPARFRRSRII*PLMLMSRGELEWRL
Trigger: AAGCCTCCATTCCAACTCTCCTCTGGACATCAGCATCAAAGGCCAGATGATCCGAGACCTTCTGAACCTGGCTGGCTTTGTTCTGCCCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp CTTGGCCTCCTTCCTTGGCTCTACTTCCTCACACTGGGGAGAACAGTAGTGCTTTTTCCAGTTTCCAGATaGGCTTCACCTGCTGATGGG +
Preference number: 5 (lower is better)
Translates to: LGLLPWLYFLTLGRTVVLFPVSR*ASPADG
Trigger: CCCATCAGCAGGTGAAGCCAATCTGGAAACTGGAAA...AAGCACTACTGTTCTCCCCAGTGTGAGGAAGTAGAGCCAAGGAAGGAGGCCAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CAA 90 bp CACCCCAGAACACAAAACAGAACTGCCAGTATACTGCTGTGTCTCATCAAGGGGCAAGAGTTCAGGTCCTaGGCTTCCTCAGGCTCCTTC +
Preference number: 5 (lower is better)
Translates to: HPRTQNRTASILLCLIKGQEFRS*ASSGSF
Trigger: GAAGGAGCCTGAGGAAGCCAAGGACCTGAACTCTTG...CCCCTTGATGAGACACAGCAGTATACTGGCAGTTCTGTTTTGTGTTCTGGGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CAA 90 bp TACTCTGATGAGGGGCAAAGTGGAGGCGGGGTAGAGGCTCAGGCTGGTCAGCAGCAGTCATCATTTCTCTaGCTGATTTTGAAGTGTGAC +
Preference number: 5 (lower is better)
Translates to: YSDEGQSGGGVEAQAGQQQSSFL*LILKCD
Trigger: GTCACACTTCAAAATCAGCAAGAGAAATGATGACTG...CTGCTGACCAGCCTGAGCCTCTACCCCGCCTCCACTTTGCCCCTCATCAGAGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp TGTTTCCAGGCCCAGAGCAAACTAGACATTTGTTGGAGCAGTAATCGGAGGGGTCTTGCCAAAACGGCTTaGCATGCGAGACAGGTTCCG +
Preference number: 5 (lower is better)
Translates to: CFQAQSKLDICWSSNRRGLAKTA*HARQVP
Trigger: CGGAACCTGTCTCGCATGCAAAGCCGTTTTGGCAAG...ACCCCTCCGATTACTGCTCCAACAAATGTCTAGTTTGCTCTGGGCCTGGAAACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CAA 90 bp CACCCCAGAACACAAAACAGAACTGCCAGTATACTGCTGTGTCTCATCAAGGGGGCTTTGCGCAAGAGCTaGGAATCCTGGGGCAGGATA +
Preference number: 5 (lower is better)
Translates to: HPRTQNRTASILLCLIKGALRKS*ESWGRI
Trigger: TATCCTGCCCCAGGATTCCAAGCTCTTGCGCAAAGC...CCCCTTGATGAGACACAGCAGTATACTGGCAGTTCTGTTTTGTGTTCTGGGGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS GCA 90 bp GATCTTTTCTCTGAAGGGCTGGAACGCAAGCAGAAAGATTCCAGTTaGTGGTATGGTTTTTGCCTCACGTTGGTGCGGCGGTACAGCAGA +
Preference number: 5 (lower is better)
Translates to: DLFSEGLERKQKDSS*WYGFCLTLVRRYSR
Trigger: TCTGCTGTACCGCCGCACCAACGTGAGGCAAAAACCATACCAGCAACTGGAATCTTTCTGCTTGCGTTCCAGCCCTTCAGAGAAAAGATC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CCA 90 bp CTTTTCTCTGAAGGGCTGGAACGCAAGCAGAAAGATTCCAGTTGCTaGTATGGTTTTTGCCTCACGTTGGTGCGGCGGTACAGCAGAGTA +
Preference number: 5 (lower is better)
Translates to: LFSEGLERKQKDSSC*YGFCLTLVRRYSRV
Trigger: TACTCTGCTGTACCGCCGCACCAACGTGAGGCAAAAACCATACCAGCAACTGGAATCTTTCTGCTTGCGTTCCAGCCCTTCAGAGAAAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CCA 90 bp TCTCCCAGTTCATCTTCTGTATCTTCAGGCTCCACCTGGTTTGGCTaGAGGTCAGTAGCTGAACCACCACCCTTAGTACAAGAGTTCAGG +
Preference number: 5 (lower is better)
Translates to: SPSSSSVSSGSTWFG*RSVAEPPPLVQEFR
Trigger: CCTGAACTCTTGTACTAAGGGTGGTGGTTCAGCTACTGACCTCCAGCCAAACCAGGTGGAGCCTGAAGATACAGAAGATGAACTGGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
ENSMUST00000129890.8
ENSMUST00000141119.8
CDS-3UTR CAA 90 bp TGCTGCTCAAGTTTAACCTGCACACATCCTCCTGTGGACTTCAAATGGAGTCTAGAGGGATGTCTCTGCTaGAAGCTGTTTCCTCGGCGC +
Preference number: 5 (lower is better)
Translates to: CCSSLTCTHPPVDFKWSLEGCLC*KLFPRR
Trigger: GCGCCGAGGAAACAGCTTCAAGCAGAGACATCCCTC...TAGACTCCATTTGAAGTCCACAGGAGGATGTGTGCAGGTTAAACTTGAGCAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CAA 90 bp CATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAGAGACAGGCTGGATCTaGGGTGAGGATACTGGCTTC +
Preference number: 5 (lower is better)
Translates to: HRPSSPPDAHIYNRTTSKETGWI*GEDTGF
Trigger: GAAGCCAGTATCCTCACCCAAGATCCAGCCTGTCTC...TTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp TGTTTCCAGGCCCAGAGCAAACTAGACATTTGTTGGAGCAGTAATCGGAGGGGTACTTGCTGGCGGAATTaGGTGTCCCATCACCCTTTG +
Preference number: 5 (lower is better)
Translates to: CFQAQSKLDICWSSNRRGTCWRN*VSHHPL
Trigger: CAAAGGGTGATGGGACACCAAATTCCGCCAGCAAGT...ACCCCTCCGATTACTGCTCCAACAAATGTCTAGTTTGCTCTGGGCCTGGAAACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS TCA 90 bp TTTTCATCCAGGCCACAGGGATGTGCCTCCATCCTAAAGTTACTCTaGCTGCACTGGGAAGAGGTAACACTGGCTGTGGATATGTTGAGG +
Preference number: 5 (lower is better)
Translates to: FSSRPQGCASILKLL*LHWEEVTLAVDMLR
Trigger: CCTCAACATATCCACAGCCAGTGTTACCTCTTCCCAGTGCAGTCAGAGTAACTTTAGGATGGAGGCACATCCCTGTGGCCTGGATGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS TCA 90 bp CAGGCTTTGCGCAAGAGCTTGGAATCCTGGGGCAGGATAAAGGACTaGGGAAAGAAACTGAACTCCTTCTTGCCAAAACGGCTTTGCATG +
Preference number: 5 (lower is better)
Translates to: QALRKSLESWGRIKD*GKKLNSFLPKRLCM
Trigger: CATGCAAAGCCGTTTTGGCAAGAAGGAGTTCAGTTTCTTTCCTCAGTCCTTTATCCTGCCCCAGGATTCCAAGCTCTTGCGCAAAGCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS CCA 90 bp TCCAAACCATCTCCCAGTTCATCTTCTGTATCTTCAGGCTCCACCTaGTTTGGCTGGAGGTCAGTAGCTGAACCACCACCCTTAGTACAA +
Preference number: 5 (lower is better)
Translates to: SKPSPSSSSVSSGST*FGWRSVAEPPPLVQ
Trigger: TTGTACTAAGGGTGGTGGTTCAGCTACTGACCTCCAGCCAAACCAGGTGGAGCCTGAAGATACAGAAGATGAACTGGGAGATGGTTTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
ENSMUST00000129890.8
ENSMUST00000141119.8
CDS-3UTR CAA 90 bp TGCTGCTCAAGTTTAACCTGCACACATCCTCCTGTGGACTTCAAATGGAGTCTACGACCGATGGTCTGCTaGACAATGTTGGGGGTCACT +
Preference number: 5 (lower is better)
Translates to: CCSSLTCTHPPVDFKWSLRPMVC*TMLGVT
Trigger: AGTGACCCCCAACATTGTCAAGCAGACCATCGGTCG...TAGACTCCATTTGAAGTCCACAGGAGGATGTGTGCAGGTTAAACTTGAGCAGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CAA 90 bp CCCATCACCATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCATTTCTCTTGCTGATTTaGAAGTGTGACCGACCGATG +
Preference number: 5 (lower is better)
Translates to: PITIALPALQMPISTIEPFLLLI*KCDRPM
Trigger: CATCGGTCGGTCACACTTCAAAATCAGCAAGAGAAA...TGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATGGTGATGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp CTTGCTTCTGGCTTCTTTCACTCAGCACAATACTGTAGAGATCATCCCAGATGTCTGCTCTCCCAGGCTTaGCGCAAGAGCTTGGAATCC +
Preference number: 5 (lower is better)
Translates to: LASGFFHSAQYCRDHPRCLLSQA*RKSLES
Trigger: GGATTCCAAGCTCTTGCGCAAAGCCTGGGAGAGCAG...ACATCTGGGATGATCTCTACAGTATTGTGCTGAGTGAAAGAAGCCAGAAGCAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CAA 90 bp CATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAGCTTTCAATGCCCATTaGTGCCCTTGGCATGCAGTC +
Preference number: 5 (lower is better)
Translates to: HRPSSPPDAHIYNRTTSKAFNAH*CPWHAV
Trigger: GACTGCATGCCAAGGGCACAAATGGGCATTGAAAGC...TTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp CTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATACTCTCTCTGCCCAGAGTACTaGAGGACAGGTAACCCCGGG +
Preference number: 5 (lower is better)
Translates to: LPALQMPISTIEPLQKYSLCPEY*RTGNPG
Trigger: CCCGGGGTTACCTGTCCTCAAGTACTCTGGGCAGAG...AGAGTATTTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS GCA 90 bp TCATCATTTCTCTTGCTGATTTTGAAGTGTGACCGACCGATGGTCTaGTTGACAATGTTGGGGGTCACTGTGCTCATCTTCCACCGAAGC +
Preference number: 5 (lower is better)
Translates to: SSFLLLILKCDRPMV*LTMLGVTVLIFHRS
Trigger: GCTTCGGTGGAAGATGAGCACAGTGACCCCCAACATTGTCAAGCAGACCATCGGTCGGTCACACTTCAAAATCAGCAAGAGAAATGATGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp ACTTCTCAGATACCAAAGCACACAGGGGTTCAATCCCTTAGGCAACATGGAGCTCGGTACAGCAGAGTATaGCTGAACAAGTTAGGGAGG +
Preference number: 5 (lower is better)
Translates to: TSQIPKHTGVQSLRQHGARYSRV*LNKLGR
Trigger: CCTCCCTAACTTGTTCAGCAATACTCTGCTGTACCG...AGCTCCATGTTGCCTAAGGGATTGAACCCCTGTGTGCTTTGGTATCTGAGAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CAA 90 bp CAAACCAAAAGTTTCAAGGGTTGGAGAGATGGCCTAGTGGTTAAGAGCATGGATGAGACAGGCTGGATCTaGGGTGAGGATACTGGCTTC +
Preference number: 5 (lower is better)
Translates to: QTKSFKGWRDGLVVKSMDETGWI*GEDTGF
Trigger: GAAGCCAGTATCCTCACCCAAGATCCAGCCTGTCTC...ATCCATGCTCTTAACCACTAGGCCATCTCTCCAACCCTTGAAACTTTTGGTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CAA 90 bp CTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATACTCTCACCGCCTGCTTCTGTaGAGAAGACCCCACTGGAAG +
Preference number: 5 (lower is better)
Translates to: LPALQMPISTIEPLQKYSHRLLL*RRPHWK
Trigger: CTTCCAGTGGGGTCTTCTCAACAGAAGCAGGCGGTG...AGAGTATTTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp CATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATGGAAGGGGAATACTaGCAACTGGCAAAACGGACG +
Preference number: 5 (lower is better)
Translates to: HRPSSPPDAHIYNRTTSKMEGEY*QLAKRT
Trigger: CGTCCGTTTTGCCAGTTGCAAGTATTCCCCTTCCAT...TTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp ACTTCTCAGATACCAAAGCACACAGGGGTTCAATCCCTTAGGCAACATGGAGCTCTCTTCTTTCGTGACTaGCTGGCGGAATTTGGTGTC +
Preference number: 5 (lower is better)
Translates to: TSQIPKHTGVQSLRQHGALFFRD*LAEFGV
Trigger: GACACCAAATTCCGCCAGCAAGTCACGAAAGAAGAG...AGCTCCATGTTGCCTAAGGGATTGAACCCCTGTGTGCTTTGGTATCTGAGAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CAA 90 bp TGCTGCTCAAGTTTAACCTGCACACATCCTCCTGTGGACTTCAAATGGAGTCTAGACAGTAGCAATGTTTaGGGGCACCTTATGGTCACC +
Preference number: 5 (lower is better)
Translates to: CCSSLTCTHPPVDFKWSLDSSNV*GHLMVT
Trigger: GGTGACCATAAGGTGCCCCAAAACATTGCTACTGTC...TAGACTCCATTTGAAGTCCACAGGAGGATGTGTGCAGGTTAAACTTGAGCAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CAA 90 bp CCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATACTCTGATCAAGAGTTCAGGTCCTaGGCTTCCTCAGGCTCCTTC +
Preference number: 5 (lower is better)
Translates to: PALQMPISTIEPLQKYSDQEFRS*ASSGSF
Trigger: GAAGGAGCCTGAGGAAGCCAAGGACCTGAACTCTTG...ATCAGAGTATTTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp TGTTTCCAGGCCCAGAGCAAACTAGACATTTGTTGGAGCAGTAATCGGAGGGGTGTCAGGTGCATGAACTaGTTGCTAAGACTCTTCATG +
Preference number: 5 (lower is better)
Translates to: CFQAQSKLDICWSSNRRGVRCMN*LLRLFM
Trigger: CATGAAGAGTCTTAGCAACAAGTTCATGCACCTGAC...ACCCCTCCGATTACTGCTCCAACAAATGTCTAGTTTGCTCTGGGCCTGGAAACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CAA 90 bp CCCATCACCATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCAGACGAGATGATGGTTTaGACTACAACATCCTTTATC +
Preference number: 5 (lower is better)
Translates to: PITIALPALQMPISTIEPDEMMV*TTTSFI
Trigger: GATAAAGGATGTTGTAGTCAAAACCATCATCTCGTC...TGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATGGTGATGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp CATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAATGTTCTCATTGCTCCTaGAGGACAAAGTCTTCCTGG +
Preference number: 5 (lower is better)
Translates to: HRPSSPPDAHIYNRTTSKCSHCS*RTKSSW
Trigger: CCAGGAAGACTTTGTCCTCAAGGAGCAATGAGAACA...TTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CCA 90 bp ACATCAAATCCACACAGTTCCGAGATATTAATGCCACTGACTCGCTaGGGGAGACAACACTTAAAGAAGAGCACTCTGAGTCTCCTTCCT +
Preference number: 5 (lower is better)
Translates to: TSNPHSSEILMPLTR*GRQHLKKSTLSLLP
Trigger: AGGAAGGAGACTCAGAGTGCTCTTCTTTAAGTGTTGTCTCCCCCAGCGAGTCAGTGGCATTAATATCTCGGAACTGTGTGGATTTGATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
ENSMUST00000141119.8
CDS CCA 90 bp ATAGATGGTAGGGGTTACATTGGGGAAGAGACTGTAGATGAGGGCTaGCCGTACAACTTTCTCATGATTGGGAAGGGATTTGGACATCAA +
Preference number: 5 (lower is better)
Translates to: IDGRGYIGEETVDEG*PYNFLMIGKGFGHQ
Trigger: TTGATGTCCAAATCCCTTCCCAATCATGAGAAAGTTGTACGGCCAGCCCTCATCTACAGTCTCTTCCCCAATGTAACCCCTACCATCTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp AAACACAATTTAATCCCCGTTACTACAGCTAAGAAACTGATATCCCTGGTTACTAGGCCAGGCTCTTCCTaGAAGGGTTCTCCCCAGCTG +
Preference number: 5 (lower is better)
Translates to: KHNLIPVTTAKKLISLVTRPGSS*KGSPQL
Trigger: CAGCTGGGGAGAACCCTTCAAGGAAGAGCCTGGCCT...AGTAACCAGGGATATCAGTTTCTTAGCTGTAGTAACGGGGATTAAATTGTGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CAA 90 bp CATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAAAACTGAACTCCTTCTaGCCAAAACGGCTTTGCATG +
Preference number: 5 (lower is better)
Translates to: HRPSSPPDAHIYNRTTSKKLNSF*PKRLCM
Trigger: CATGCAAAGCCGTTTTGGCAAGAAGGAGTTCAGTTT...TTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATG
47% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CAA 90 bp CTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATACTCTCGGATCATCTGGCCTTaGATGCTGATGTCCAGAGGA +
Preference number: 5 (lower is better)
Translates to: LPALQMPISTIEPLQKYSRIIWP*MLMSRG
Trigger: TCCTCTGGACATCAGCATCAAAGGCCAGATGATCCG...AGAGTATTTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp CCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATACTCTGATACTTGCTGGCGGAATTaGGTGTCCCATCACCCTTTG +
Preference number: 5 (lower is better)
Translates to: PALQMPISTIEPLQKYSDTCWRN*VSHHPL
Trigger: CAAAGGGTGATGGGACACCAAATTCCGCCAGCAAGT...ATCAGAGTATTTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp AAACACAATTTAATCCCCGTTACTACAGCTAAGAAACTGATATCCCTGGTTACTCTCTGCCCAGAGTACTaGAGGACAGGTAACCCCGGG +
Preference number: 5 (lower is better)
Translates to: KHNLIPVTTAKKLISLVTLCPEY*RTGNPG
Trigger: CCCGGGGTTACCTGTCCTCAAGTACTCTGGGCAGAG...AGTAACCAGGGATATCAGTTTCTTAGCTGTAGTAACGGGGATTAAATTGTGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CAA 90 bp GAGAAGTGGAAATCACTGTGTGGATTAGCCCAAGAAAGTTCTTTGGCTATGGTCGAAGATGTGGCTTTATaGGCAGTGACACTGACAGGA +
Preference number: 5 (lower is better)
Translates to: EKWKSLCGLAQESSLAMVEDVAL*AVTLTG
Trigger: TCCTGTCAGTGTCACTGCCAATAAAGCCACATCTTC...GACCATAGCCAAAGAACTTTCTTGGGCTAATCCACACAGTGATTTCCACTTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CAA 90 bp CATCGCCCTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAAGGTGCATGAACTTGTaGCTAAGACTCTTCATGGAA +
Preference number: 5 (lower is better)
Translates to: HRPSSPPDAHIYNRTTSKRCMNL*LRLFME
Trigger: TTCCATGAAGAGTCTTAGCAACAAGTTCATGCACCT...TTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAGGGCGATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp CTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATACTCTATGTCCAGAGGAGAGTaGGAATGGAGGCTTGGAGAA +
Preference number: 5 (lower is better)
Translates to: LPALQMPISTIEPLQKYSMSRGE*EWRLGE
Trigger: TTCTCCAAGCCTCCATTCCAACTCTCCTCTGGACAT...AGAGTATTTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp GCACTAGGATACTGTAACCAGGACAAGAGGGTGTTGGCTGTTGATATCAGAACAGTGCTCTGGAGTCATTaGACATTTGTCTCTAGGAGA +
Preference number: 5 (lower is better)
Translates to: ALGYCNQDKRVLAVDIRTVLWSH*TFVSRR
Trigger: TCTCCTAGAGACAAATGTCAAATGACTCCAGAGCAC...TGTTCTGATATCAACAGCCAACACCCTCTTGTCCTGGTTACAGTATCCTAGTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CAA 90 bp CCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATACTCTGATTGTTCTCATTGCTCCTaGAGGACAAAGTCTTCCTGG +
Preference number: 5 (lower is better)
Translates to: PALQMPISTIEPLQKYSDCSHCS*RTKSSW
Trigger: CCAGGAAGACTTTGTCCTCAAGGAGCAATGAGAACA...ATCAGAGTATTTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp ACTGTGGAAAAGAAGGAGTTTCCTCAGATACTGAAAACTAGAACTACCATACAGGAGCGCTTGGACTGTTaGCTGGTGTTCTCATTGCTC +
Preference number: 5 (lower is better)
Translates to: TVEKKEFPQILKTRTTIQERLDC*LVFSLL
Trigger: GAGCAATGAGAACACCAGCAAACAGTCCAAGCGCTC...CTGTATGGTAGTTCTAGTTTTCAGTATCTGAGGAAACTCCTTCTTTTCCACAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CAA 90 bp CCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATACTCTGATGTCAGGTGCATGAACTaGTTGCTAAGACTCTTCATG +
Preference number: 5 (lower is better)
Translates to: PALQMPISTIEPLQKYSDVRCMN*LLRLFM
Trigger: CATGAAGAGTCTTAGCAACAAGTTCATGCACCTGAC...ATCAGAGTATTTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp CCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATACTCTGATAGCAGATCTACTCCTTaGAGCTTGTTTCCATGGTAC +
Preference number: 5 (lower is better)
Translates to: PALQMPISTIEPLQKYSDSRSTP*SLFPWY
Trigger: GTACCATGGAAACAAGCTCAAAGGAGTAGATCTGCT...ATCAGAGTATTTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp ACAGTTGTTACCACAACCACAATTAAGACAAAGAATATTCCCATGTGCCTCTTTATGGAAGGGGAATACTaGCAACTGGCAAAACGGACG +
Preference number: 5 (lower is better)
Translates to: TVVTTTTIKTKNIPMCLFMEGEY*QLAKRT
Trigger: CGTCCGTTTTGCCAGTTGCAAGTATTCCCCTTCCAT...AAAGAGGCACATGGGAATATTCTTTGTCTTAATTGTGGTTGTGGTAACAACTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CAA 90 bp CCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATACTCTGATAGGTGCATGAACTTGTaGCTAAGACTCTTCATGGAA +
Preference number: 5 (lower is better)
Translates to: PALQMPISTIEPLQKYSDRCMNL*LRLFME
Trigger: TTCCATGAAGAGTCTTAGCAACAAGTTCATGCACCT...ATCAGAGTATTTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp ATTTATTCATTTATAAAGAAGGCAACTGTGTCTGTCATCTGCAGGAAAATGGGTCGGATCATCTGGCCTTaGATGCTGATGTCCAGAGGA +
Preference number: 5 (lower is better)
Translates to: IYSFIKKATVSVICRKMGRIIWP*MLMSRG
Trigger: TCCTCTGGACATCAGCATCAAAGGCCAGATGATCCG...ACCCATTTTCCTGCAGATGACAGACACAGTTGCCTTCTTTATAAATGAATAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS-3UTR CAA 90 bp CTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATACTCTCAGTCATCATTTCTCTaGCTGATTTTGAAGTGTGAC +
Preference number: 5 (lower is better)
Translates to: LPALQMPISTIEPLQKYSQSSFL*LILKCD
Trigger: GTCACACTTCAAAATCAGCAAGAGAAATGATGACTG...AGAGTATTTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS-3UTR CAA 90 bp CTTCCAGCCCTCCAGATGCCCATATCTACAATAGAACCACTTCAAAAATACTCTGACGAGATGATGGTTTaGACTACAACATCCTTTATC +
Preference number: 5 (lower is better)
Translates to: LPALQMPISTIEPLQKYSDEMMV*TTTSFI
Trigger: GATAAAGGATGTTGTAGTCAAAACCATCATCTCGTC...AGAGTATTTTTGAAGTGGTTCTATTGTAGATATGGGCATCTGGAGGGCTGGAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CCA 72 bp GAAGGGGGAACAGGAGCTCTGTCTTCTCCAAGTACCTaGGGGTCAACTGCAGACCCACAGGCAGGGCTGGGA +
Preference number: 6 (lower is better)
Translates to: EGGTGALSSPST*GSTADPQAGLG
Trigger: TCCCAGCCCTGCCTGTGGGTCTGCAGTTGACCCCCAGGTACTTGGAGAAGACAGAGCTCCTGTTCCCCCTTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CCA 72 bp CCTCGAGCAGATGCTGGTGGCTTCACAATCCACTTCTaGCGGCTGCTGCTCTCCCAGGCTTTGCGCAAGAGC +
Preference number: 6 (lower is better)
Translates to: PRADAGGFTIHF*RLLLSQALRKS
Trigger: GCTCTTGCGCAAAGCCTGGGAGAGCAGCAGCCGCCAGAAGTGGATTGTGAAGCCACCAGCATCTGCTCGAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS CCA 72 bp TCTCCCCAGCTGCTGCCAGTGAGAGGTATGGATCAGTaGGTGAAGTTGCCATGGGCTGGGCCATGGGGAAGA +
Preference number: 6 (lower is better)
Translates to: SPQLLPVRGMDQ*VKLPWAGPWGR
Trigger: TCTTCCCCATGGCCCAGCCCATGGCAACTTCACCCACTGATCCATACCTCTCACTGGCAGCAGCTGGGGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS TCA 72 bp GGGGCCTGCGCTTGGGGAGCTGACTCCATTTGTGAATaGCCTGAATGCCAATGCCTCGAGCAGATGCTGGTG +
Preference number: 6 (lower is better)
Translates to: GACAWGADSICE*PECQCLEQMLV
Trigger: CACCAGCATCTGCTCGAGGCATTGGCATTCAGGTCATTCACAAATGGAGTCAGCTCCCCAAGCGCAGGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS TCA 72 bp GGGGCCTGCGCTTGGGGAGCTGACTCCATTTGTGAATaGCCTGAATGCCAATGCCTCGAGCAGATGCTGGCT +
Preference number: 6 (lower is better)
Translates to: GACAWGADSICE*PECQCLEQMLA
Trigger: AGCCAGCATCTGCTCGAGGCATTGGCATTCAGGTCATTCACAAATGGAGTCAGCTCCCCAAGCGCAGGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113678.2
CDS GCA 72 bp AATAGGCTGGCTGGGATGGGACTCCCAAGAAACTGGTaGCCAGCCCTGCTGACAGTGTGCCTACGTGCTTCT +
Preference number: 6 (lower is better)
Translates to: NRLAGMGLPRNW*PALLTVCLRAS
Trigger: AGAAGCACGTAGGCACACTGTCAGCAGGGCTGGGCACCAGTTTCTTGGGAGTCCCATCCCAGCCAGCCTATT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS TCA 72 bp CCCACAGGCAGGGCTGGGATTGAGCCCATGGACATGTaGGGCAAGGAGGTGAATGCTGATCCTCTTGGTACA +
Preference number: 6 (lower is better)
Translates to: PTGRAGIEPMDM*GKEVNADPLGT
Trigger: TGTACCAAGAGGATCAGCATTCACCTCCTTGCCTCACATGTCCATGGGCTCAATCCCAGCCCTGCCTGTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS GCA 72 bp ATGCTGGTGGCTTCACAATCCACTTCTGGCGGCTGCTaGTCTCCCAGGCTTTGCGCAAGAGCTTGGAATCCT +
Preference number: 6 (lower is better)
Translates to: MLVASQSTSGGC*SPRLCARAWNP
Trigger: AGGATTCCAAGCTCTTGCGCAAAGCCTGGGAGAGCAGCAGCCGCCAGAAGTGGATTGTGAAGCCACCAGCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS GCA 72 bp CAGATGCTGGTGGCTTCACAATCCACTTCTGGCGGCTaGTGCTCTCCCAGGCTTTGCGCAAGAGCTTGGAAT +
Preference number: 6 (lower is better)
Translates to: QMLVASQSTSGG*CSPRLCARAWN
Trigger: ATTCCAAGCTCTTGCGCAAAGCCTGGGAGAGCAGCAGCCGCCAGAAGTGGATTGTGAAGCCACCAGCATCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS CAA 72 bp CGCTGGCCCATCAGAGGTTTCCACCGCCTGCTTCTGTaGAGAAGACCCCACTGGAAGCTGGGGTTCACAAAA +
Preference number: 6 (lower is better)
Translates to: RWPIRGFHRLLL*RRPHWKLGFTK
Trigger: TTTTGTGAACCCCAGCTTCCAGTGGGGTCTTCTCAACAGAAGCAGGCGGTGGAAACCTCTGATGGGCCAGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS TCA 72 bp CCAGGAAGGATCGCACTGTCTAATCCAATATCCTCCTaGGGAAACCGCTGGCCCATCAGAGGTTTCCACCGC +
Preference number: 6 (lower is better)
Translates to: PGRIALSNPISS*GNRWPIRGFHR
Trigger: GCGGTGGAAACCTCTGATGGGCCAGCGGTTTCCTCAGGAGGATATTGGATTAGACAGTGCGATCCTTCCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CCA 72 bp TCCCAGGCTGGTCAAGATGGACAGAAGAAAGACGAGTaGCCACTTCAGCTACACCAAGAGGCTGGAGGGAAG +
Preference number: 6 (lower is better)
Translates to: SQAGQDGQKKDE*PLQLHQEAGGK
Trigger: CTTCCCTCCAGCCTCTTGGTGTAGCTGAAGTGGCCACTCGTCTTTCTTCTGTCCATCTTGACCAGCCTGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CCA 72 bp GAGCTCACAGCAGTCAAGCGGGAGTCAGTGACTGACTaGGAAGCAGAAGCAGCAGAAAGTCTGGAACTCTGC +
Preference number: 6 (lower is better)
Translates to: ELTAVKRESVTD*EAEAAESLELC
Trigger: GCAGAGTTCCAGACTTTCTGCTGCTTCTGCTTCCCAGTCAGTCACTGACTCCCGCTTGACTGCTGTGAGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CAA 90 bp CTCTGCCCAGAGTACTTGAGGACAGGTAACCCCGGGGTAGAGCGCTaGGACTGTTTGCTGGTGTTCTCATTGCTCCTTGAGGACAAAGTC +
Preference number: 6 (lower is better)
Translates to: LCPEYLRTGNPGVER*DCLLVFSLLLEDKV
Trigger: GACTTTGTCCTCAAGGAGCAATGAGAACACCAGCAAACAGTCCAAGCGCTCTACCCCGGGGTTACCTGTCCTCAAGTACTCTGGGCAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS TCA 72 bp GTGAAGCAGACACTGTGCCTGAGGGATGTCTCTGCTTaGAGCTGTTTCCTCGGCGCAGGCCAATACTGTAGT +
Preference number: 6 (lower is better)
Translates to: VKQTLCLRDVSA*SCFLGAGQYCS
Trigger: ACTACAGTATTGGCCTGCGCCGAGGAAACAGCTTCAAGCAGAGACATCCCTCAGGCACAGTGTCTGCTTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS TCA 72 bp AGTCATGAGCGATGTTGGCAGAGACCACAGTGGGGCTaGGTCAGAGACAATCCCCGTGTGGAAGCCTTTGTA +
Preference number: 6 (lower is better)
Translates to: SHERCWQRPQWG*VRDNPRVEAFV
Trigger: TACAAAGGCTTCCACACGGGGATTGTCTCTGACTCAGCCCCACTGTGGTCTCTGCCAACATCGCTCATGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS TCA 72 bp GACGAGTGGCCACTTCAGCTACACCAAGAGGTTGTGTaGAGTCTCCCGAGTTTCCAGGGCACTCTTCCTCTT +
Preference number: 6 (lower is better)
Translates to: DEWPLQLHQEVV*SLPSFQGTLPL
Trigger: AAGAGGAAGAGTGCCCTGGAAACTCGGGAGACTTCACACAACCTCTTGGTGTAGCTGAAGTGGCCACTCGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129890.8
CDS GCA 72 bp AAACTGGTGCCCAGCCCTGCTGACAGTGTGCCTACGTaGTTCTTTTCCAGTTTCCAGATTGGCTTCACCTGC +
Preference number: 6 (lower is better)
Translates to: KLVPSPADSVPT*FFSSFQIGFTC
Trigger: GCAGGTGAAGCCAATCTGGAAACTGGAAAAGAAGCACGTAGGCACACTGTCAGCAGGGCTGGGCACCAGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS GCA 72 bp TCTGAAGGGCTGGAACGCAAGCAGAAAGATTCCAGTTaGTGGTATGGTTTTTGCCTCACGTTGGTGCGGCGG +
Preference number: 6 (lower is better)
Translates to: SEGLERKQKDSS*WYGFCLTLVRR
Trigger: CCGCCGCACCAACGTGAGGCAAAAACCATACCAGCAACTGGAATCTTTCTGCTTGCGTTCCAGCCCTTCAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS GCA 72 bp GGAAAGAAACTGAACTCCTTCTTGCCAAAACGGCTTTaGATGCGAGACAGGTTCCGCCACAGCCGGTCCTTC +
Preference number: 6 (lower is better)
Translates to: GKKLNSFLPKRL*MRDRFRHSRSF
Trigger: GAAGGACCGGCTGTGGCGGAACCTGTCTCGCATGCAAAGCCGTTTTGGCAAGAAGGAGTTCAGTTTCTTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS CCA 72 bp GCTGGAACGCAAGCAGAAAGATTCCAGTTGCTGGTATaGTTTTTGCCTCACGTTGGTGCGGCGGTACAGCAG +
Preference number: 6 (lower is better)
Translates to: AGTQAERFQLLV*FLPHVGAAVQQ
Trigger: CTGCTGTACCGCCGCACCAACGTGAGGCAAAAACCATACCAGCAACTGGAATCTTTCTGCTTGCGTTCCAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CCA 72 bp GAAGGGCTGGAACGCAAGCAGAAAGATTCCAGTTGCTaGTATGGTTTTTGCCTCACGTTGGTGCGGCGGTAC +
Preference number: 6 (lower is better)
Translates to: EGLERKQKDSSC*YGFCLTLVRRY
Trigger: GTACCGCCGCACCAACGTGAGGCAAAAACCATACCAGCAACTGGAATCTTTCTGCTTGCGTTCCAGCCCTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CCA 72 bp TCCCAGGCTGGTCAAGATGGACAGAAGAAAGACGAGTaGCCACTTCAGCTACACCAAGAGGCTCTAGCACCA +
Preference number: 6 (lower is better)
Translates to: SQAGQDGQKKDE*PLQLHQEALAP
Trigger: TGGTGCTAGAGCCTCTTGGTGTAGCTGAAGTGGCCACTCGTCTTTCTTCTGTCCATCTTGACCAGCCTGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141119.8
CDS CAA 72 bp CTGCACTGGGAAGAGGTAACACTGGCTGTGGATATGTaGAGGGTGCTAGGGATAGATGGGGTGATAGGGGCA +
Preference number: 6 (lower is better)
Translates to: LHWEEVTLAVDM*RVLGIDGVIGA
Trigger: TGCCCCTATCACCCCATCTATCCCTAGCACCCTCAACATATCCACAGCCAGTGTTACCTCTTCCCAGTGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CAA 72 bp TTGAAGTGTGACCGACCGATGGTCTGCTTGACAATGTaGGGGGTCACTGTGCTCATCTTCCACCGAAGCAGC +
Preference number: 6 (lower is better)
Translates to: LKCDRPMVCLTM*GVTVLIFHRSS
Trigger: GCTGCTTCGGTGGAAGATGAGCACAGTGACCCCCAACATTGTCAAGCAGACCATCGGTCGGTCACACTTCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CAA 90 bp AGGTCAGTAGCTGAACCACCACCCTTAGTACAAGAGTTCAGGTCCTaGGCTTCCTCAGGCTCCTTCCCAGGCTGGTCAAGATGGACAGAA +
Preference number: 6 (lower is better)
Translates to: RSVAEPPPLVQEFRS*ASSGSFPGWSRWTE
Trigger: TTCTGTCCATCTTGACCAGCCTGGGAAGGAGCCTGAGGAAGCCAAGGACCTGAACTCTTGTACTAAGGGTGGTGGTTCAGCTACTGACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
ENSMUST00000129890.8
ENSMUST00000141119.8
CDS TCA 72 bp AGGCCACAGGGATGTGCCTCCATCCTAAAGTTACTCTaGCTGCACTGGGAAGAGGTAACACTGGCTGTGGAT +
Preference number: 6 (lower is better)
Translates to: RPQGCASILKLL*LHWEEVTLAVD
Trigger: ATCCACAGCCAGTGTTACCTCTTCCCAGTGCAGTCAGAGTAACTTTAGGATGGAGGCACATCCCTGTGGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS TCA 72 bp CTGGGATTGAGCCCATGGACATGTGAGGCAAGGAGGTaGATGCTGATCCTCTTGGTACAGAAGACTGTGCTG +
Preference number: 6 (lower is better)
Translates to: LGLSPWTCEARR*MLILLVQKTVL
Trigger: CAGCACAGTCTTCTGTACCAAGAGGATCAGCATTCACCTCCTTGCCTCACATGTCCATGGGCTCAATCCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS TCA 72 bp GCGCTTGGACTGTTTGCTGGTGTTCTCATTGCTCCTTaGGGACAAAGTCTTCCTGGATATGGGAGACAGGCC +
Preference number: 6 (lower is better)
Translates to: ALGLFAGVLIAP*GQSLPGYGRQA
Trigger: GGCCTGTCTCCCATATCCAGGAAGACTTTGTCCTCAAGGAGCAATGAGAACACCAGCAAACAGTCCAAGCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CCA 72 bp GAGAGGTATGGATCAGTGGGTGAAGTTGCCATGGGCTaGGCCATGGGGAAGACTGTAGAAGATGTGGCTTTA +
Preference number: 6 (lower is better)
Translates to: ERYGSVGEVAMG*AMGKTVEDVAL
Trigger: TAAAGCCACATCTTCTACAGTCTTCCCCATGGCCCAGCCCATGGCAACTTCACCCACTGATCCATACCTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CAA 72 bp AGGAAAGAAACTGAACTCCTTCTTGCCAAAACGGCTTaGCATGCGAGACAGGTTCCGCCACAGCCGGTCCTT +
Preference number: 6 (lower is better)
Translates to: RKETELLLAKTA*HARQVPPQPVL
Trigger: AAGGACCGGCTGTGGCGGAACCTGTCTCGCATGCAAAGCCGTTTTGGCAAGAAGGAGTTCAGTTTCTTTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS CAA 90 bp TTGCTGATTTTGAAGTGTGACCGACCGATGGTCTGCTTGACAATGTaGGGGGTCACTGTGCTCATCTTCCACCGAAGCAGCCTCCTCTGT +
Preference number: 6 (lower is better)
Translates to: LLILKCDRPMVCLTM*GVTVLIFHRSSLLC
Trigger: ACAGAGGAGGCTGCTTCGGTGGAAGATGAGCACAGTGACCCCCAACATTGTCAAGCAGACCATCGGTCGGTCACACTTCAAAATCAGCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CAA 90 bp AAAGGACTGAGGAAAGAAACTGAACTCCTTCTTGCCAAAACGGCTTaGCATGCGAGACAGGTTCCGCCACAGCCGGTCCTTCCTCCCAAT +
Preference number: 6 (lower is better)
Translates to: KGLRKETELLLAKTA*HARQVPPQPVLPPN
Trigger: ATTGGGAGGAAGGACCGGCTGTGGCGGAACCTGTCTCGCATGCAAAGCCGTTTTGGCAAGAAGGAGTTCAGTTTCTTTCCTCAGTCCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS CAA 90 bp CGCAAGCAGAAAGATTCCAGTTGCTGGTATGGTTTTTGCCTCACGTaGGTGCGGCGGTACAGCAGAGTATTGCTGAACAAGTTAGGGAGG +
Preference number: 6 (lower is better)
Translates to: RKQKDSSCWYGFCLT*VRRYSRVLLNKLGR
Trigger: CCTCCCTAACTTGTTCAGCAATACTCTGCTGTACCGCCGCACCAACGTGAGGCAAAAACCATACCAGCAACTGGAATCTTTCTGCTTGCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CAA 90 bp AGGGCTGGAACGCAAGCAGAAAGATTCCAGTTGCTGGTATGGTTTTaGCCTCACGTTGGTGCGGCGGTACAGCAGAGTATTGCTGAACAA +
Preference number: 6 (lower is better)
Translates to: RAGTQAERFQLLVWF*PHVGAAVQQSIAEQ
Trigger: TTGTTCAGCAATACTCTGCTGTACCGCCGCACCAACGTGAGGCAAAAACCATACCAGCAACTGGAATCTTTCTGCTTGCGTTCCAGCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CAA 90 bp AGAACAAAGCCAGCCAGGTTCAGAAGGTCTCGGATCATCTGGCCTTaGATGCTGATGTCCAGAGGAGAGTTGGAATGGAGGCTTGGAGAA +
Preference number: 6 (lower is better)
Translates to: RTKPARFRRSRIIWP*MLMSRGELEWRLGE
Trigger: TTCTCCAAGCCTCCATTCCAACTCTCCTCTGGACATCAGCATCAAAGGCCAGATGATCCGAGACCTTCTGAACCTGGCTGGCTTTGTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS TCA 72 bp AGACAGGCCAGCTTGACTCTTCTTAGACTTGGGTGTTaGCCTGTCTTCAGAGGACAGTGTGGTTCCCTCAGA +
Preference number: 6 (lower is better)
Translates to: RQASLTLLRLGC*PVFRGQCGSLR
Trigger: TCTGAGGGAACCACACTGTCCTCTGAAGACAGGTCAACACCCAAGTCTAAGAAGAGTCAAGCTGGCCTGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS GCA 72 bp CGCAAGCAGAAAGATTCCAGTTGCTGGTATGGTTTTTaGCTCACGTTGGTGCGGCGGTACAGCAGAGTATTG +
Preference number: 6 (lower is better)
Translates to: RKQKDSSCWYGF*LTLVRRYSRVL
Trigger: CAATACTCTGCTGTACCGCCGCACCAACGTGAGGCAAAAACCATACCAGCAACTGGAATCTTTCTGCTTGCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CCA 72 bp ACAGCCTCAGTGAAGTGTACCTCTTTAGTAGCACTCTaGGAATCCGGGTTTTCATCCAGGCCACAGGGATGT +
Preference number: 6 (lower is better)
Translates to: TASVKCTSLVAL*ESGFSSRPQGC
Trigger: ACATCCCTGTGGCCTGGATGAAAACCCGGATTCCCAGAGTGCTACTAAAGAGGTACACTTCACTGAGGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CCA 72 bp ACAAAGCCAGCCAGGTTCAGAAGGTCTCGGATCATCTaGCCTTTGATGCTGATGTCCAGAGGAGAGTTGGAA +
Preference number: 6 (lower is better)
Translates to: TKPARFRRSRII*PLMLMSRGELE
Trigger: TTCCAACTCTCCTCTGGACATCAGCATCAAAGGCCAGATGATCCGAGACCTTCTGAACCTGGCTGGCTTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CAA 72 bp ACAGTGTGCCTACGTGCTTCTTTTCCAGTTTCCAGATaGGCTTCACCTGCTGATGGGCCTGAGACCAGACTT +
Preference number: 6 (lower is better)
Translates to: TVCLRASFPVSR*ASPADGPETRL
Trigger: AAGTCTGGTCTCAGGCCCATCAGCAGGTGAAGCCAATCTGGAAACTGGAAAAGAAGCACGTAGGCACACTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CAA 72 bp AGCGCTTGGACTGTTTGCTGGTGTTCTCATTGCTCCTaGAGGACAAAGTCTTCCTGGATATGGGAGACAGGC +
Preference number: 6 (lower is better)
Translates to: SAWTVCWCSHCS*RTKSSWIWETG
Trigger: GCCTGTCTCCCATATCCAGGAAGACTTTGTCCTCAAGGAGCAATGAGAACACCAGCAAACAGTCCAAGCGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CAA 90 bp TCATTTCTCTTGCTGATTTTGAAGTGTGACCGACCGATGGTCTGCTaGACAATGTTGGGGGTCACTGTGCTCATCTTCCACCGAAGCAGC +
Preference number: 6 (lower is better)
Translates to: SFLLLILKCDRPMVC*TMLGVTVLIFHRSS
Trigger: GCTGCTTCGGTGGAAGATGAGCACAGTGACCCCCAACATTGTCAAGCAGACCATCGGTCGGTCACACTTCAAAATCAGCAAGAGAAATGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS TCA 72 bp TCTCTAATGGATCGAAAACCAGGAGACTTCATGTGGTaGCCCCAGCAGCCCAGCCAGTCATCATTTCTCTTG +
Preference number: 6 (lower is better)
Translates to: SLMDRKPGDFMW*PQQPSQSSFLL
Trigger: CAAGAGAAATGATGACTGGCTGGGCTGCTGGGGTCACCACATGAAGTCTCCTGGTTTTCGATCCATTAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CCA 72 bp TCATCTTCTGTATCTTCAGGCTCCACCTGGTTTGGCTaGAGGTCAGTAGCTGAACCACCACCCTTAGTACAA +
Preference number: 6 (lower is better)
Translates to: SSSVSSGSTWFG*RSVAEPPPLVQ
Trigger: TTGTACTAAGGGTGGTGGTTCAGCTACTGACCTCCAGCCAAACCAGGTGGAGCCTGAAGATACAGAAGATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
ENSMUST00000129890.8
ENSMUST00000141119.8
CDS CAA 72 bp ACGCAAGCAGAAAGATTCCAGTTGCTGGTATGGTTTTaGCCTCACGTTGGTGCGGCGGTACAGCAGAGTATT +
Preference number: 6 (lower is better)
Translates to: TQAERFQLLVWF*PHVGAAVQQSI
Trigger: AATACTCTGCTGTACCGCCGCACCAACGTGAGGCAAAAACCATACCAGCAACTGGAATCTTTCTGCTTGCGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CAA 72 bp TTGCTGATTTTGAAGTGTGACCGACCGATGGTCTGCTaGACAATGTTGGGGGTCACTGTGCTCATCTTCCAC +
Preference number: 6 (lower is better)
Translates to: LLILKCDRPMVC*TMLGVTVLIFH
Trigger: GTGGAAGATGAGCACAGTGACCCCCAACATTGTCAAGCAGACCATCGGTCGGTCACACTTCAAAATCAGCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS TCA 72 bp CCAATCTGGAAGGAGCCTGGGAAGTGGTTTAGCTTCTaGTGCTCTCTAATGGATCGAAAACCAGGAGACTTC +
Preference number: 6 (lower is better)
Translates to: PIWKEPGKWFSF*CSLMDRKPGDF
Trigger: GAAGTCTCCTGGTTTTCGATCCATTAGAGAGCATCAGAAGCTAAACCACTTCCCAGGCTCCTTCCAGATTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042125.15
CDS TCA 72 bp GACAAAGTCTTCCTGGATATGGGAGACAGGCCAGCTTaGCTCTTCTTAGACTTGGGTGTTGACCTGTCTTCA +
Preference number: 6 (lower is better)
Translates to: DKVFLDMGDRPA*LFLDLGVDLSS
Trigger: TGAAGACAGGTCAACACCCAAGTCTAAGAAGAGTCAAGCTGGCCTGTCTCCCATATCCAGGAAGACTTTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS GCA 72 bp TCCTTTCTGGCTCAGATAGTTCCACAAAGCTTTCAATaGCCATTTGTGCCCTTGGCATGCAGTCTCATCAGC +
Preference number: 6 (lower is better)
Translates to: SFLAQIVPQSFQ*PFVPLACSLIS
Trigger: GCTGATGAGACTGCATGCCAAGGGCACAAATGGGCATTGAAAGCTTTGTGGAACTATCTGAGCCAGAAAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CCA 72 bp CCACACAGTTCCGAGATATTAATGCCACTGACTCGCTaGGGGAGACAACACTTAAAGAAGAGCACTCTGAGT +
Preference number: 6 (lower is better)
Translates to: PHSSEILMPLTR*GRQHLKKSTLS
Trigger: ACTCAGAGTGCTCTTCTTTAAGTGTTGTCTCCCCCAGCGAGTCAGTGGCATTAATATCTCGGAACTGTGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
ENSMUST00000141119.8
CDS CCA 72 bp AGGGGTTACATTGGGGAAGAGACTGTAGATGAGGGCTaGCCGTACAACTTTCTCATGATTGGGAAGGGATTT +
Preference number: 6 (lower is better)
Translates to: RGYIGEETVDEG*PYNFLMIGKGF
Trigger: AAATCCCTTCCCAATCATGAGAAAGTTGTACGGCCAGCCCTCATCTACAGTCTCTTCCCCAATGTAACCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CAA 72 bp AAAGATTCCAGTTGCTGGTATGGTTTTTGCCTCACGTaGGTGCGGCGGTACAGCAGAGTATTGCTGAACAAG +
Preference number: 6 (lower is better)
Translates to: KDSSCWYGFCLT*VRRYSRVLLNK
Trigger: CTTGTTCAGCAATACTCTGCTGTACCGCCGCACCAACGTGAGGCAAAAACCATACCAGCAACTGGAATCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CAA 90 bp CTGGCTCAGATAGTTCCACAAAGCTTTCAATGCCCATTTGTGCCCTaGGCATGCAGTCTCATCAGCATTAGCCTGGTATTCTGTGTTCTT +
Preference number: 6 (lower is better)
Translates to: LAQIVPQSFQCPFVP*ACSLISISLVFCVL
Trigger: AAGAACACAGAATACCAGGCTAATGCTGATGAGACTGCATGCCAAGGGCACAAATGGGCATTGAAAGCTTTGTGGAACTATCTGAGCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS GCA 72 bp CCACAAAGCTTTCAATGCCCATTTGTGCCCTTGGCATaGAGTCTCATCAGCATTAGCCTGGTATTCTGTGTT +
Preference number: 6 (lower is better)
Translates to: PQSFQCPFVPLA*SLISISLVFCV
Trigger: AACACAGAATACCAGGCTAATGCTGATGAGACTGCATGCCAAGGGCACAAATGGGCATTGAAAGCTTTGTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CCA 72 bp CACAAAACAAGCCTGTTCAAACTGGTAGCCTTGTCGTaGCATCTTCTCCAAGCCTTTTTCAGCCAACTTCCT +
Preference number: 6 (lower is better)
Translates to: HKTSLFKLVALS*HLLQAFFSQLP
Trigger: AGGAAGTTGGCTGAAAAAGGCTTGGAGAAGATGCCACGACAAGGCTACCAGTTTGAACAGGCTTGTTTTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CCA 72 bp CCTTTGAGCTTGTTTCCATGGTACTTCTGTTCCCACTaGGTGGTGAGAATGTTGAAATATCGTGGCTGCTCA +
Preference number: 6 (lower is better)
Translates to: PLSLFPWYFCSH*VVRMLKYRGCS
Trigger: TGAGCAGCCACGATATTTCAACATTCTCACCACCCAGTGGGAACAGAAGTACCATGGAAACAAGCTCAAAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CCA 72 bp TTCCGAAGCAGATCTACTCCTTTGAGCTTGTTTCCATaGTACTTCTGTTCCCACTGGGTGGTGAGAATGTTG +
Preference number: 6 (lower is better)
Translates to: FRSRSTPLSLFP*YFCSHWVVRML
Trigger: CAACATTCTCACCACCCAGTGGGAACAGAAGTACCATGGAAACAAGCTCAAAGGAGTAGATCTGCTTCGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CAA 72 bp ATAGTTCCACAAAGCTTTCAATGCCCATTTGTGCCCTaGGCATGCAGTCTCATCAGCATTAGCCTGGTATTC +
Preference number: 6 (lower is better)
Translates to: IVPQSFQCPFVP*ACSLISISLVF
Trigger: GAATACCAGGCTAATGCTGATGAGACTGCATGCCAAGGGCACAAATGGGCATTGAAAGCTTTGTGGAACTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CCA 72 bp ATAGGCTTTCTTCATCTTCTGTGCAGTGAAGTGCTCTaGAGTCATTTGACATTTGTCTCTAGGAGAGCTTGG +
Preference number: 6 (lower is better)
Translates to: IGFLHLLCSEVL*SHLTFVSRRAW
Trigger: CCAAGCTCTCCTAGAGACAAATGTCAAATGACTCCAGAGCACTTCACTGCACAGAAGATGAAGAAAGCCTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2
CDS CCA 72 bp CTGGCCGTACAACTTTCTCATGATTGGGAAGGGATTTaGACATCAAATCCACACAGTTCCGAGATATTAATG +
Preference number: 6 (lower is better)
Translates to: LAVQLSHDWEGI*TSNPHSSEILM
Trigger: CATTAATATCTCGGAACTGTGTGGATTTGATGTCCAAATCCCTTCCCAATCATGAGAAAGTTGTACGGCCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042125.15
ENSMUST00000113678.2