Pregenerated sensors for TTC9B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000007944Ensembl transcript IDs: ENSMUST00000008088.9
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GACCCCGGCCTGCTGCCAGCCGCCCCCGTCTGGATCCCTGGAAACTaGTCTCCTTTGGCCGGACACTCAGCATCTCGCCTCCAAGCAGGC | + |
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Preference number: 1 (lower is better) Translates to: DPGLLPAAPVWIPGN*SPLAGHSASRLQAG Trigger: GCCTGCTTGGAGGCGAGATGCTGAGTGTCCGGCCAAAGGAGACCAGTTTCCAGGGATCCAGACGGGGGCGGCTGGCAGCAGGCCGGGGTC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR CCA 90 bp | GGAGGGCCAGAGCCAGGACAATACAGTGCCCCTATGTGGGGTCTATaGCTCTCACTGAGACCTGCCCACCACCACCCGCCTGGGCAGCCA | + |
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Preference number: 1 (lower is better) Translates to: GGPEPGQYSAPMWGL*LSLRPAHHHPPGQP Trigger: TGGCTGCCCAGGCGGGTGGTGGTGGGCAGGTCTCAGTGAGAGCCATAGACCCCACATAGGGGCACTGTATTGTCCTGGCTCTGGCCCTCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR CCA 90 bp | TGCTGCCAGCCGCCCCCGTCTGGATCCCTGGAAACTGGTCTCCTTTaGCCGGACACTCAGCATCTCGCCTCCAAGCAGGCCAGACACTCC | + |
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Preference number: 1 (lower is better) Translates to: CCQPPPSGSLETGLL*PDTQHLASKQARHS Trigger: GGAGTGTCTGGCCTGCTTGGAGGCGAGATGCTGAGTGTCCGGCCAAAGGAGACCAGTTTCCAGGGATCCAGACGGGGGCGGCTGGCAGCA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR CCA 90 bp | CATGGACATGGAGGGCCAGAGCCAGGACAATACAGTGCCCCTATGTaGGGTCTATGGCTCTCACTGAGACCTGCCCACCACCACCCGCCT | + |
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Preference number: 1 (lower is better) Translates to: HGHGGPEPGQYSAPM*GLWLSLRPAHHHPP Trigger: AGGCGGGTGGTGGTGGGCAGGTCTCAGTGAGAGCCATAGACCCCACATAGGGGCACTGTATTGTCCTGGCTCTGGCCCTCCATGTCCATG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR TCA 90 bp | AGCCAGGACAATACAGTGCCCCTATGTGGGGTCTATGGCTCTCACTaGGACCTGCCCACCACCACCCGCCTGGGCAGCCATGAATGTAGC | + |
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Preference number: 1 (lower is better) Translates to: SQDNTVPLCGVYGSH*DLPTTTRLGSHECS Trigger: GCTACATTCATGGCTGCCCAGGCGGGTGGTGGTGGGCAGGTCTCAGTGAGAGCCATAGACCCCACATAGGGGCACTGTATTGTCCTGGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR GCA 90 bp | GGCAGCCATGAATGTAGCGCCCCAGGCCTGCCACAGCCCACCATTTaGCAAGGTGGGGGAGGCCCTGGGCAGGATACTCACTCTATTTAT | + |
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Preference number: 1 (lower is better) Translates to: GSHECSAPGLPQPTI*QGGGGPGQDTHSIY Trigger: ATAAATAGAGTGAGTATCCTGCCCAGGGCCTCCCCCACCTTGGCAAATGGTGGGCTGTGGCAGGCCTGGGGCGCTACATTCATGGCTGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR GCA 90 bp | CGTTGCTGGACATGGACATGGAGGGCCAGAGCCAGGACAATACAGTaGCCCTATGTGGGGTCTATGGCTCTCACTGAGACCTGCCCACCA | + |
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Preference number: 1 (lower is better) Translates to: RCWTWTWRARARTIQ*PYVGSMALTETCPP Trigger: TGGTGGGCAGGTCTCAGTGAGAGCCATAGACCCCACATAGGGGCACTGTATTGTCCTGGCTCTGGCCCTCCATGTCCATGTCCAGCAACG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR CCA 90 bp | CAAGTTCTGAGAGTCTCTCAGAAGCCAGTAGCCACTTTCCAAGGATaGGGTTGGCATAGAAACGGCGCCCTTTACCCCACCCCTCACCGC | + |
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Preference number: 1 (lower is better) Translates to: QVLRVSQKPVATFQG*GWHRNGALYPTPHR Trigger: GCGGTGAGGGGTGGGGTAAAGGGCGCCGTTTCTATGCCAACCCCATCCTTGGAAAGTGGCTACTGGCTTCTGAGAGACTCTCAGAACTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR TCA 90 bp | GGAGGACACTTAATTTATTCCTTTGTACCCCAGGTTGTGGAGCTCTaGGCCCAATCTGCTGTGGGGAGAGGGTGGGTGGGCAGGGATACT | + |
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Preference number: 1 (lower is better) Translates to: GGHLIYSFVPQVVEL*AQSAVGRGWVGRDT Trigger: AGTATCCCTGCCCACCCACCCTCTCCCCACAGCAGATTGGGCTCAGAGCTCCACAACCTGGGGTACAAAGGAATAAATTAAGTGTCCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR GCA 90 bp | CAGAACAAGCCATTGGAAACTGTGAGAACTTGTTCAAGACCCAAGTaGGGGGCTGCTCATGGCTGTGGCCTTCCTAGAAAGCAGGTGCAG | + |
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Preference number: 1 (lower is better) Translates to: QNKPLETVRTCSRPK*GAAHGCGLPRKQVQ Trigger: CTGCACCTGCTTTCTAGGAAGGCCACAGCCATGAGCAGCCCCGCACTTGGGTCTTGAACAAGTTCTCACAGTTTCCAATGGCTTGTTCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR CCA 90 bp | CCACAGTGGGACACCCTTAAACCCTACATTTCCTCCCTGGGCCTCTaGGTGTCTGCAGAAGTGACAGCTAGGTATAGACCTGTCCTTCAT | + |
|
Preference number: 1 (lower is better) Translates to: PQWDTLKPYISSLGL*VSAEVTARYRPVLH Trigger: ATGAAGGACAGGTCTATACCTAGCTGTCACTTCTGCAGACACCCAGAGGCCCAGGGAGGAAATGTAGGGTTTAAGGGTGTCCCACTGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR TCA 90 bp | TTAAACCCTACATTTCCTCCCTGGGCCTCTGGGTGTCTGCAGAAGTaGCAGCTAGGTATAGACCTGTCCTTCATCCCCACAATAAGACCA | + |
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Preference number: 1 (lower is better) Translates to: LNPTFPPWASGCLQK*QLGIDLSFIPTIRP Trigger: TGGTCTTATTGTGGGGATGAAGGACAGGTCTATACCTAGCTGTCACTTCTGCAGACACCCAGAGGCCCAGGGAGGAAATGTAGGGTTTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR-3UTR CCA 90 bp | CCTGTTCCCTACCCGACGCCGGCCCCTGGAGTTCCCTGGCCGCCCCACCACCCTCCACCACCACCCGCCTaGGCAGCCATGAATGTAGCG | + |
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Preference number: 2 (lower is better) Translates to: PVPYPTPAPGVPWPPHHPPPPPA*AAMNVA Trigger: CGCTACATTCATGGCTGCCCAGGCGGGTGGTGGTGG...AGGGTGGTGGGGCGGCCAGGGAACTCCAGGGGCCGGCGTCGGGTAGGGAACAGG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR-3UTR GCA 90 bp | CCTGTTCCCTACCCGACGCCGGCCCCTGGAGTTCCCTGGCCGCCCCACCACCCTTGTGTGTGCGTCCCCTaGCTGGGCCCTGATGCTGAT | + |
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Preference number: 2 (lower is better) Translates to: PVPYPTPAPGVPWPPHHPCVCVP*LGPDAD Trigger: ATCAGCATCAGGGCCCAGGCAGGGGACGCACACACA...AGGGTGGTGGGGCGGCCAGGGAACTCCAGGGGCCGGCGTCGGGTAGGGAACAGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR-3UTR CCA 90 bp | TTCCCTACCCGACGCCGGCCCCTGGAGTTCCCTGGCCGCCCCACCACCCTCACTGTAGAGGCTGCCCCTTaGCCTCAGCCCACGACAGAC | + |
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Preference number: 2 (lower is better) Translates to: FPTRRRPLEFPGRPTTLTVEAAP*PQPTTD Trigger: GTCTGTCGTGGGCTGAGGCCAAGGGGCAGCCTCTAC...AGTGAGGGTGGTGGGGCGGCCAGGGAACTCCAGGGGCCGGCGTCGGGTAGGGAA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR CAA 90 bp | CTGCTGCCAGCCGCCCCCGTCTGGATCCCTGGAAACTGGTCTCCTTaGGCCGGACACTCAGCATCTCGCCTCCAAGCAGGCCAGACACTC | + |
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Preference number: 2 (lower is better) Translates to: LLPAAPVWIPGNWSP*AGHSASRLQAGQTL Trigger: GAGTGTCTGGCCTGCTTGGAGGCGAGATGCTGAGTGTCCGGCCAAAGGAGACCAGTTTCCAGGGATCCAGACGGGGGCGGCTGGCAGCAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR-3UTR GCA 90 bp | CTGGATCCCTGGAAACTGGTCTCCTTTGGCCGGACACTCAGCATCTCGCCTCCAGCTCTCACTGAGACCTaGCCACCACCACCCGCCTGG | + |
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Preference number: 2 (lower is better) Translates to: LDPWKLVSFGRTLSISPPALTET*PPPPAW Trigger: CCAGGCGGGTGGTGGTGGGCAGGTCTCAGTGAGAGC...TGGAGGCGAGATGCTGAGTGTCCGGCCAAAGGAGACCAGTTTCCAGGGATCCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR-3UTR GCA 90 bp | CTGGATCCCTGGAAACTGGTCTCCTTTGGCCGGACACTCAGCATCTCGCCTCCAAAGCTTGGCTGTGTGTaGGTCCCCTGCCTGGGCCCT | + |
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Preference number: 2 (lower is better) Translates to: LDPWKLVSFGRTLSISPPKLGCV*VPCLGP Trigger: AGGGCCCAGGCAGGGGACGCACACACAGCCAAGCTT...TGGAGGCGAGATGCTGAGTGTCCGGCCAAAGGAGACCAGTTTCCAGGGATCCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR-3UTR GCA 90 bp | AAGTGCGGGGCTGCTCATGGCTGTGGCCTTCCTAGAAAGCAGGTGCAGCAAGTTGTAGCGCCCCAGGCCTaGCACAGCCCACCATTTGCC | + |
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Preference number: 2 (lower is better) Translates to: KCGAAHGCGLPRKQVQQVVAPQA*HSPPFA Trigger: GGCAAATGGTGGGCTGTGGCAGGCCTGGGGCGCTAC...AACTTGCTGCACCTGCTTTCTAGGAAGGCCACAGCCATGAGCAGCCCCGCACTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR CAA 90 bp | GGCACAAGGCGCAGCATTAAAGGTAAGCCCTGCCCCCTACCAAGCTaGGCTGTGTGTGCGTCCCCTGCCTGGGCCCTGATGCTGATTTAC | + |
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Preference number: 2 (lower is better) Translates to: GTRRSIKGKPCPLPS*AVCASPAWALMLIY Trigger: GTAAATCAGCATCAGGGCCCAGGCAGGGGACGCACACACAGCCAAGCTTGGTAGGGGGCAGGGCTTACCTTTAATGCTGCGCCTTGTGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR-3UTR CCA 90 bp | CCCCGTCTGGATCCCTGGAAACTGGTCTCCTTTGGCCGGACACTCAGCATCTCGACAGACATTCCGAGCTaGGCAGGTCAGGGGAAGGTG | + |
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Preference number: 2 (lower is better) Translates to: PRLDPWKLVSFGRTLSISTDIPS*AGQGKV Trigger: CACCTTCCCCTGACCTGCCCAGCTCGGAATGTCTGT...CGAGATGCTGAGTGTCCGGCCAAAGGAGACCAGTTTCCAGGGATCCAGACGGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR-3UTR CCA 90 bp | GGACATGGAGGGCCAGAGCCAGGACAATACAGTGCCCCTATGTGGGGTCTATGGTCCTCCCTGGGCCTCTaGGTGTCTGCAGAAGTGACA | + |
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Preference number: 2 (lower is better) Translates to: GHGGPEPGQYSAPMWGLWSSLGL*VSAEVT Trigger: TGTCACTTCTGCAGACACCCAGAGGCCCAGGGAGGA...CCATAGACCCCACATAGGGGCACTGTATTGTCCTGGCTCTGGCCCTCCATGTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR-3UTR CCA 90 bp | CTGGATCCCTGGAAACTGGTCTCCTTTGGCCGGACACTCAGCATCTCGCCTCCACCTACATTTCCTCCCTaGGCCTCTGGGTGTCTGCAG | + |
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Preference number: 2 (lower is better) Translates to: LDPWKLVSFGRTLSISPPPTFPP*ASGCLQ Trigger: CTGCAGACACCCAGAGGCCCAGGGAGGAAATGTAGG...TGGAGGCGAGATGCTGAGTGTCCGGCCAAAGGAGACCAGTTTCCAGGGATCCAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR-3UTR CCA 90 bp | CTGGATCCCTGGAAACTGGTCTCCTTTGGCCGGACACTCAGCATCTCGCCTCCACCTATGTGGGGTCTATaGCTCTCACTGAGACCTGCC | + |
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Preference number: 2 (lower is better) Translates to: LDPWKLVSFGRTLSISPPPMWGL*LSLRPA Trigger: GGCAGGTCTCAGTGAGAGCCATAGACCCCACATAGG...TGGAGGCGAGATGCTGAGTGTCCGGCCAAAGGAGACCAGTTTCCAGGGATCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR-3UTR CCA 90 bp | AAGTGCGGGGCTGCTCATGGCTGTGGCCTTCCTAGAAAGCAGGTGCAGCAAGTTGCCACTTTCCAAGGATaGGGTTGGCATAGAAACGGC | + |
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Preference number: 2 (lower is better) Translates to: KCGAAHGCGLPRKQVQQVATFQG*GWHRNG Trigger: GCCGTTTCTATGCCAACCCCATCCTTGGAAAGTGGC...AACTTGCTGCACCTGCTTTCTAGGAAGGCCACAGCCATGAGCAGCCCCGCACTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR-3UTR TCA 90 bp | GGAGTTCAAGGTCATCTTCGGTTACACAGAGTTCCAGACCAGCCTGTCACAGAAGTCTATGGCTCTCACTaGGACCTGCCCACCACCACC | + |
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Preference number: 2 (lower is better) Translates to: GVQGHLRLHRVPDQPVTEVYGSH*DLPTTT Trigger: GGTGGTGGTGGGCAGGTCTCAGTGAGAGCCATAGAC...TTCTGTGACAGGCTGGTCTGGAACTCTGTGTAACCGAAGATGACCTTGAACTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR-3UTR CCA 90 bp | AGAAAATGTAAAAAGGTCATCTTCCAGAACAAGCCATTGGAAACTGTGAGAACTTGTGCGTCCCCTGCCTaGGCCCTGATGCTGATTTAC | + |
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Preference number: 2 (lower is better) Translates to: RKCKKVIFQNKPLETVRTCASPA*ALMLIY Trigger: GTAAATCAGCATCAGGGCCCAGGCAGGGGACGCACA...AGTTCTCACAGTTTCCAATGGCTTGTTCTGGAAGATGACCTTTTTACATTTTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR CCA 72 bp | CTGCTGCCAGCCGCCCCCGTCTGGATCCCTGGAAACTaGTCTCCTTTGGCCGGACACTCAGCATCTCGCCTC | + |
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Preference number: 3 (lower is better) Translates to: LLPAAPVWIPGN*SPLAGHSASRL Trigger: GAGGCGAGATGCTGAGTGTCCGGCCAAAGGAGACCAGTTTCCAGGGATCCAGACGGGGGCGGCTGGCAGCAG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR TCA 72 bp | GAGGCGCCAGTGGCAGCGGCTTTACCAGTAAACGCATaGGTCGGGGGAAGGTGCCCGGTGAGGTTGGTGGGA | + |
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Preference number: 3 (lower is better) Translates to: EAPVAAALPVNA*VGGRCPVRLVG Trigger: TCCCACCAACCTCACCGGGCACCTTCCCCCGACTCATGCGTTTACTGGTAAAGCCGCTGCCACTGGCGCCTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR GCA 72 bp | CTGCCCCCTACCAAGCTTGGCTGTGTGTGCGTCCCCTaGCTGGGCCCTGATGCTGATTTACTCCACAGTGGG | + |
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Preference number: 3 (lower is better) Translates to: LPPTKLGCVCVP*LGPDADLLHSG Trigger: CCCACTGTGGAGTAAATCAGCATCAGGGCCCAGGCAGGGGACGCACACACAGCCAAGCTTGGTAGGGGGCAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR CCA 72 bp | GGTGAGGTTGGTGGGACTAAGGTAGAGGCTGCCCCTTaGCCTCAGCCCACGACAGACATTCCGAGCTGGGCA | + |
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Preference number: 3 (lower is better) Translates to: GEVGGTKVEAAP*PQPTTDIPSWA Trigger: TGCCCAGCTCGGAATGTCTGTCGTGGGCTGAGGCCAAGGGGCAGCCTCTACCTTAGTCCCACCAACCTCACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR GCA 72 bp | GGATCTGGCACAAGGCGCAGCATTAAAGGTAAGCCCTaGCCCCTACCAAGCTTGGCTGTGTGTGCGTCCCCT | + |
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Preference number: 3 (lower is better) Translates to: GSGTRRSIKGKP*PLPSLAVCASP Trigger: AGGGGACGCACACACAGCCAAGCTTGGTAGGGGGCAGGGCTTACCTTTAATGCTGCGCCTTGTGCCAGATCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR CCA 72 bp | GCCACAGCCCACCATTTGCCAAGGTGGGGGAGGCCCTaGGCAGGATACTCACTCTATTTATTGGGGAAGGGG | + |
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Preference number: 3 (lower is better) Translates to: ATAHHLPRWGRP*AGYSLYLLGKG Trigger: CCCCTTCCCCAATAAATAGAGTGAGTATCCTGCCCAGGGCCTCCCCCACCTTGGCAAATGGTGGGCTGTGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR GCA 72 bp | ACATGGACATGGAGGGCCAGAGCCAGGACAATACAGTaGCCCTATGTGGGGTCTATGGCTCTCACTGAGACC | + |
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Preference number: 3 (lower is better) Translates to: TWTWRARARTIQ*PYVGSMALTET Trigger: GGTCTCAGTGAGAGCCATAGACCCCACATAGGGGCACTGTATTGTCCTGGCTCTGGCCCTCCATGTCCATGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR CCA 72 bp | AGAGTCTCTCAGAAGCCAGTAGCCACTTTCCAAGGATaGGGTTGGCATAGAAACGGCGCCCTTTACCCCACC | + |
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Preference number: 3 (lower is better) Translates to: RVSQKPVATFQG*GWHRNGALYPT Trigger: GGTGGGGTAAAGGGCGCCGTTTCTATGCCAACCCCATCCTTGGAAAGTGGCTACTGGCTTCTGAGAGACTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR TCA 72 bp | ACATTTCCTCCCTGGGCCTCTGGGTGTCTGCAGAAGTaGCAGCTAGGTATAGACCTGTCCTTCATCCCCACA | + |
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Preference number: 3 (lower is better) Translates to: TFPPWASGCLQK*QLGIDLSFIPT Trigger: TGTGGGGATGAAGGACAGGTCTATACCTAGCTGTCACTTCTGCAGACACCCAGAGGCCCAGGGAGGAAATGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR CCA 72 bp | GACACCCTTAAACCCTACATTTCCTCCCTGGGCCTCTaGGTGTCTGCAGAAGTGACAGCTAGGTATAGACCT | + |
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Preference number: 3 (lower is better) Translates to: DTLKPYISSLGL*VSAEVTARYRP Trigger: AGGTCTATACCTAGCTGTCACTTCTGCAGACACCCAGAGGCCCAGGGAGGAAATGTAGGGTTTAAGGGTGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR-3UTR CAA 90 bp | CAGAGTTCCAGACCAGCCTGTCACAGAAAATGTAAAAAGGTCATCTTCCAGAACCTCAGGGACAGAATATaGTGGGGGATCTGGCACAAG | + |
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Preference number: 3 (lower is better) Translates to: QSSRPACHRKCKKVIFQNLRDRI*WGIWHK Trigger: CTTGTGCCAGATCCCCCACAATATTCTGTCCCTGAG...GTTCTGGAAGATGACCTTTTTACATTTTCTGTGACAGGCTGGTCTGGAACTCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| CDS-3UTR CCA 90 bp | CCTGTTCCCTACCCGACGCCGGCCCCTGGAGTTCCCTGGCCGCCCCACCACCCTGCCCCCAGACGGCTCTaGGGCAGGACCCGACCGAGC | + |
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Preference number: 4 (lower is better) Translates to: PVPYPTPAPGVPWPPHHPAPRRL*GRTRPS Trigger: GCTCGGTCGGGTCCTGCCCCAGAGCCGTCTGGGGGC...AGGGTGGTGGGGCGGCCAGGGAACTCCAGGGGCCGGCGTCGGGTAGGGAACAGG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| CDS-3UTR GCA 90 bp | AGCCGCCCCCGTCTGGATCCCTGGAAACTGGTCTCCTTTGGCCGGACACTCAGCCGGCAGCCCGCAGGCTaGTGTCGAGCGCCGCAGCCA | + |
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Preference number: 4 (lower is better) Translates to: SRPRLDPWKLVSFGRTLSRQPAG*CRAPQP Trigger: TGGCTGCGGCGCTCGACAGCAGCCTGCGGGCTGCCG...GCTGAGTGTCCGGCCAAAGGAGACCAGTTTCCAGGGATCCAGACGGGGGCGGCT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| CDS-3UTR TCA 90 bp | AGCCCACGACAGACATTCCGAGCTGGGCAGGTCAGGGGAAGGTGCCCAGTAGGGGCTCCGGGGCAGCGCTaGGCATCAGCACCGGGGACA | + |
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Preference number: 4 (lower is better) Translates to: SPRQTFRAGQVRGRCPVGAPGQR*ASAPGT Trigger: TGTCCCCGGTGCTGATGCTCAGCGCTGCCCCGGAGC...CCCTACTGGGCACCTTCCCCTGACCTGCCCAGCTCGGAATGTCTGTCGTGGGCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| CDS-3UTR TCA 90 bp | GGACATGGAGGGCCAGAGCCAGGACAATACAGTGCCCCTATGTGGGGTCTATGGCCAGGGCGGGCCCCTTaGGCCGCCTTCAGCTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: GHGGPEPGQYSAPMWGLWPGRAP*AAFSCS Trigger: GCTGCAGCTGAAGGCGGCTCAAGGGGCCCGCCCTGG...CCATAGACCCCACATAGGGGCACTGTATTGTCCTGGCTCTGGCCCTCCATGTCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| CDS-3UTR TCA 90 bp | TTCCCTACCCGACGCCGGCCCCTGGAGTTCCCTGGCCGCCCCACCACCCTCACTCACGATAGGTGGCCTTaGAGTTGCCCTGCTGTTTCT | + |
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Preference number: 4 (lower is better) Translates to: FPTRRRPLEFPGRPTTLTHDRWP*SCPAVS Trigger: AGAAACAGCAGGGCAACTTCAAGGCCACCTATCGTG...AGTGAGGGTGGTGGGGCGGCCAGGGAACTCCAGGGGCCGGCGTCGGGTAGGGAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| CDS-3UTR GCA 90 bp | TTTACTCCACAGTGGGACACCCTTAAACCCTACATTTCCTCCCTGGGCCTCTGGTCCACCAGGCGCCGCTaGTCCTCGCTGAGGCGGGCG | + |
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Preference number: 4 (lower is better) Translates to: FTPQWDTLKPYISSLGLWSTRRR*SSLRRA Trigger: CGCCCGCCTCAGCGAGGAGCAGCGGCGCCTGGTGGA...CCAGAGGCCCAGGGAGGAAATGTAGGGTTTAAGGGTGTCCCACTGTGGAGTAAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR CAA 72 bp | CGCAGCATTAAAGGTAAGCCCTGCCCCCTACCAAGCTaGGCTGTGTGTGCGTCCCCTGCCTGGGCCCTGATG | + |
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Preference number: 4 (lower is better) Translates to: RSIKGKPCPLPS*AVCASPAWALM Trigger: CATCAGGGCCCAGGCAGGGGACGCACACACAGCCAAGCTTGGTAGGGGGCAGGGCTTACCTTTAATGCTGCG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| CDS-3UTR TCA 90 bp | GACATGGAGGGCCAGAGCCAGGACAATACAGTGCCCCTATGTGGGGTCTATGGCGTTTCTCCAGCACCTTaGGACAGTACTCACGCACCC | + |
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Preference number: 4 (lower is better) Translates to: DMEGQSQDNTVPLCGVYGVSPAP*DSTHAP Trigger: GGGTGCGTGAGTACTGTCTCAAGGTGCTGGAGAAAC...GCCATAGACCCCACATAGGGGCACTGTATTGTCCTGGCTCTGGCCCTCCATGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| CDS-3UTR GCA 90 bp | GGACATGGAGGGCCAGAGCCAGGACAATACAGTGCCCCTATGTGGGGTCTATGGCTTCAGCTGCAGCAGTaGCCGGTGGTACTTGCCAAT | + |
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Preference number: 4 (lower is better) Translates to: GHGGPEPGQYSAPMWGLWLQLQQ*PVVLAN Trigger: ATTGGCAAGTACCACCGGGCACTGCTGCAGCTGAAG...CCATAGACCCCACATAGGGGCACTGTATTGTCCTGGCTCTGGCCCTCCATGTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| CDS-3UTR GCA 90 bp | GGATCTGGCACAAGGCGCAGCATTAAAGGTAAGCCCTGCCCCCTACCAAGCTTGTTCACCAGCTCCGACTaGAGGAGGCAAGCAGTGAGG | + |
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Preference number: 4 (lower is better) Translates to: GSGTRRSIKGKPCPLPSLFTSSD*RRQAVR Trigger: CCTCACTGCTTGCCTCCTGCAGTCGGAGCTGGTGAA...CAAGCTTGGTAGGGGGCAGGGCTTACCTTTAATGCTGCGCCTTGTGCCAGATCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| CDS-3UTR CCA 90 bp | AGCCCACGACAGACATTCCGAGCTGGGCAGGTCAGGGGAAGGTGCCCAGTAGGGGGTGGTACTTGCCAATaGCTTCTCGGAACTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: SPRQTFRAGQVRGRCPVGGGTCQ*LLGTSS Trigger: AGAAGAAGTTCCGAGAAGCCATTGGCAAGTACCACC...CCCTACTGGGCACCTTCCCCTGACCTGCCCAGCTCGGAATGTCTGTCGTGGGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| CDS-3UTR GCA 90 bp | GGCACAAGGCGCAGCATTAAAGGTAAGCCCTGCCCCCTACCAAGCTTGGCTGTGGCCTTGAAGTTGCCCTaGTGTTTCTCCAGCACCTTG | + |
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Preference number: 4 (lower is better) Translates to: GTRRSIKGKPCPLPSLAVALKLP*CFSSTL Trigger: CAAGGTGCTGGAGAAACAGCAGGGCAACTTCAAGGC...CACAGCCAAGCTTGGTAGGGGGCAGGGCTTACCTTTAATGCTGCGCCTTGTGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| CDS-3UTR CCA 90 bp | AGCTTGGCTGTGTGTGCGTCCCCTGCCTGGGCCCTGATGCTGATTTACTCCACATCACTGTCTTCCCTCTaGAGGCTGCAACGGTTCATC | + |
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Preference number: 4 (lower is better) Translates to: SLAVCASPAWALMLIYSTSLSSL*RLQRFI Trigger: GATGAACCGTTGCAGCCTCCAGAGGGAAGACAGTGA...TGTGGAGTAAATCAGCATCAGGGCCCAGGCAGGGGACGCACACACAGCCAAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| CDS-3UTR GCA 90 bp | GGATCTGGCACAAGGCGCAGCATTAAAGGTAAGCCCTGCCCCCTACCAAGCTTGCTTCCCTCTGGAGGCTaGAACGGTTCATCTTCAGCT | + |
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Preference number: 4 (lower is better) Translates to: GSGTRRSIKGKPCPLPSLLPSGG*NGSSSA Trigger: AGCTGAAGATGAACCGTTGCAGCCTCCAGAGGGAAG...CAAGCTTGGTAGGGGGCAGGGCTTACCTTTAATGCTGCGCCTTGTGCCAGATCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| CDS-3UTR GCA 90 bp | ACCATTTGCCAAGGTGGGGGAGGCCCTGGGCAGGATACTCACTCTATTTATTGGAGTGGTAGAAGGCAATaGCGGCACGATAGGTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: TICQGGGGPGQDTHSIYWSGRRQ*RHDRWP Trigger: AGGCCACCTATCGTGCCGGCATTGCCTTCTACCACT...CCAATAAATAGAGTGAGTATCCTGCCCAGGGCCTCCCCCACCTTGGCAAATGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| CDS-3UTR GCA 90 bp | TTCTGGAGTTCAAGGTCATCTTCGGTTACACAGAGTTCCAGACCAGCCTGTCACGAGCTGGGCCTCCAGTaGCACCATCACTGTCTTCCC | + |
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Preference number: 4 (lower is better) Translates to: FWSSRSSSVTQSSRPACHELGLQ*HHHCLP Trigger: GGGAAGACAGTGATGGTGGCACTGGAGGCCCAGCTC...GTGACAGGCTGGTCTGGAACTCTGTGTAACCGAAGATGACCTTGAACTCCAGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| 3UTR CAA 72 bp | AGAAAATGTAAAAAGGTCATCTTCCAGAACAAGCCATaGGAAACTGTGAGAACTTGTTCAAGACCCAAGTGC | + |
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Preference number: 4 (lower is better) Translates to: RKCKKVIFQNKP*ETVRTCSRPKC Trigger: GCACTTGGGTCTTGAACAAGTTCTCACAGTTTCCAATGGCTTGTTCTGGAAGATGACCTTTTTACATTTTCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| CDS TCA 90 bp | CTTCTCGGAACTTCTTCTCTCGGTAGCAACGCTGACCCTCCGCCTTaGACGCCACGGCAGCCCGCAGGCTGCTGTCGAGCGCCGCAGCCA | + |
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Preference number: 5 (lower is better) Translates to: LLGTSSLGSNADPPP*TPRQPAGCCRAPQP Trigger: TGGCTGCGGCGCTCGACAGCAGCCTGCGGGCTGCCGTGGCGTTCAAGGCGGAGGGTCAGCGTTGCTACCGAGAGAAGAAGTTCCGAGAAG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| CDS-3UTR CAA 90 bp | CTGGATCCCTGGAAACTGGTCTCCTTTGGCCGGACACTCAGCATCTCGCCTCCAGCCAGGGCGGGCCCCTaGAGCCGCCTTCAGCTGCAG | + |
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Preference number: 5 (lower is better) Translates to: LDPWKLVSFGRTLSISPPARAGP*SRLQLQ Trigger: CTGCAGCTGAAGGCGGCTCAAGGGGCCCGCCCTGGC...TGGAGGCGAGATGCTGAGTGTCCGGCCAAAGGAGACCAGTTTCCAGGGATCCAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| CDS GCA 90 bp | CAGACCGCCAGGGCGGGCCCCTTGAGCCGCCTTCAGCTGCAGCAGTaGCCGGTGGTACTTGCCAATGGCTTCTCGGAACTTCTTCTCTCG | + |
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Preference number: 5 (lower is better) Translates to: QTARAGPLSRLQLQQ*PVVLANGFSELLLS Trigger: CGAGAGAAGAAGTTCCGAGAAGCCATTGGCAAGTACCACCGGGCACTGCTGCAGCTGAAGGCGGCTCAAGGGGCCCGCCCTGGCGGTCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| CDS-3UTR CAA 90 bp | AGCCGCCCCCGTCTGGATCCCTGGAAACTGGTCTCCTTTGGCCGGACACTCAGCAGTGCCCGGTGGTACTaGCCAATGGCTTCTCGGAAC | + |
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Preference number: 5 (lower is better) Translates to: SRPRLDPWKLVSFGRTLSSARWY*PMASRN Trigger: GTTCCGAGAAGCCATTGGCAAGTACCACCGGGCACT...GCTGAGTGTCCGGCCAAAGGAGACCAGTTTCCAGGGATCCAGACGGGGGCGGCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| CDS-3UTR CAA 90 bp | CACTCAGCATCTCGCCTCCAAGCAGGCCAGACACTCCAGAGAGCCCTGGGCCCCTGTTTCTCCAGCACCTaGAGACAGTACTCACGCACC | + |
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Preference number: 5 (lower is better) Translates to: HSASRLQAGQTLQRALGPCFSST*RQYSRT Trigger: GGTGCGTGAGTACTGTCTCAAGGTGCTGGAGAAACA...GGGGCCCAGGGCTCTCTGGAGTGTCTGGCCTGCTTGGAGGCGAGATGCTGAGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| CDS GCA 90 bp | GAGCTGGGCCTCCAGTGCCACCATCACTGTCTTCCCTCTGGAGGCTaGAACGGTTCATCTTCAGCTGAGTCAGCTGGATGTAGCGGAGAA | + |
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Preference number: 5 (lower is better) Translates to: ELGLQCHHHCLPSGG*NGSSSAESAGCSGE Trigger: TTCTCCGCTACATCCAGCTGACTCAGCTGAAGATGAACCGTTGCAGCCTCCAGAGGGAAGACAGTGATGGTGGCACTGGAGGCCCAGCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| CDS CCA 72 bp | GCTGTCGAGCGCCGCAGCCAGGCCCCCAGACGGCTCTaGGGCAGGACCCGACCGAGCAGAGCCATGGCGAGG | + |
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Preference number: 6 (lower is better) Translates to: AVERRSQAPRRL*GRTRPSRAMAR Trigger: CCTCGCCATGGCTCTGCTCGGTCGGGTCCTGCCCCAGAGCCGTCTGGGGGCCTGGCTGCGGCGCTCGACAGC 75% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| CDS TCA 72 bp | ACTTCTTCTCTCGGTAGCAACGCTGACCCTCCGCCTTaGACGCCACGGCAGCCCGCAGGCTGCTGTCGAGCG | + |
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Preference number: 6 (lower is better) Translates to: TSSLGSNADPPP*TPRQPAGCCRA Trigger: CGCTCGACAGCAGCCTGCGGGCTGCCGTGGCGTTCAAGGCGGAGGGTCAGCGTTGCTACCGAGAGAAGAAGT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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| CDS GCA 72 bp | AGGGCGGGCCCCTTGAGCCGCCTTCAGCTGCAGCAGTaGCCGGTGGTACTTGCCAATGGCTTCTCGGAACTT | + |
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Preference number: 6 (lower is better) Translates to: RAGPLSRLQLQQ*PVVLANGFSEL Trigger: AAGTTCCGAGAAGCCATTGGCAAGTACCACCGGGCACTGCTGCAGCTGAAGGCGGCTCAAGGGGCCCGCCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008088.9 |
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