RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TTC7B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033530

Ensembl transcript IDs: ENSMUST00000062957.8, ENSMUST00000223020.2, ENSMUST00000223110.2

Found 242 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GATCTGGCAAAAACAAGAATGAATGGATGCAGGAGCAGAGAGCAATaGTTCTGGGTTGGTGAGGTTAATCCACTCTGGTTACATATCCAT +
Preference number: 1 (lower is better)
Translates to: DLAKTRMNGCRSREQ*FWVGEVNPLWLHIH
Trigger: ATGGATATGTAACCAGAGTGGATTAACCTCACCAACCCAGAATCATTGCTCTCTGCTCCTGCATCCATTCATTCTTGTTTTTGCCAGATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
3UTR-3UTR CCA 90 bp ATCCACTCTGGTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGCATCTGAGCCCGTGTaGCAGGTGAGGCGGGCGGCC +
Preference number: 2 (lower is better)
Translates to: IHSGYISIQGLGSAGASTASEPV*QVRRAA
Trigger: GGCCGCCCGCCTCACCTGCCACACGGGCTCAGATGC...AGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAACCAGAGTGGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
3UTR-3UTR CCA 90 bp AATATGGCACATAATCCATTGGGGACATCAGTAGATTCAGAGGACAGTCATGGAGCATCTGAGCCCGTGTaGCAGGTGAGGCGGGCGGCC +
Preference number: 2 (lower is better)
Translates to: NMAHNPLGTSVDSEDSHGASEPV*QVRRAA
Trigger: GGCCGCCCGCCTCACCTGCCACACGGGCTCAGATGC...TCCATGACTGTCCTCTGAATCTACTGATGTCCCCAATGGATTATGTGCCATATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
3UTR-3UTR CCA 90 bp GTAGATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGCATCTGAGCCCGTGTaGCAGGTGAGGCGGGCGGCC +
Preference number: 2 (lower is better)
Translates to: VDSEDSHGSGKNKNEWMQASEPV*QVRRAA
Trigger: GGCCGCCCGCCTCACCTGCCACACGGGCTCAGATGC...CTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAATCTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
3UTR-3UTR TCA 90 bp CTGAACTTTAACCTGGAATATCTTCTTCTACATTCGCTGATTAAGTCCGTAATCTGCAGGTGCGTCCACTaGGTGACAGGATGGCCCCGG +
Preference number: 2 (lower is better)
Translates to: LNFNLEYLLLHSLIKSVICRCVH*VTGWPR
Trigger: CCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCA...GATTACGGACTTAATCAGCGAATGTAGAAGAAGATATTCCAGGTTAAAGTTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
3UTR-3UTR TCA 90 bp AATATGGCACATAATCCATTGGGGACATCAGTAGATTCAGAGGACAGTCATGGAAGGAGCAGAGAGCAATaGTTCTGGGTTGGTGAGGTT +
Preference number: 2 (lower is better)
Translates to: NMAHNPLGTSVDSEDSHGRSREQ*FWVGEV
Trigger: AACCTCACCAACCCAGAATCATTGCTCTCTGCTCCT...TCCATGACTGTCCTCTGAATCTACTGATGTCCCCAATGGATTATGTGCCATATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
3UTR-3UTR CCA 90 bp CTGAACTTTAACCTGGAATATCTTCTTCTACATTCGCTGATTAAGTCCGTAATCAAAAACAAGAATGAATaGATGCAGGAGCAGAGAGCA +
Preference number: 2 (lower is better)
Translates to: LNFNLEYLLLHSLIKSVIKNKNE*MQEQRA
Trigger: TGCTCTCTGCTCCTGCATCCATTCATTCTTGTTTTT...GATTACGGACTTAATCAGCGAATGTAGAAGAAGATATTCCAGGTTAAAGTTCAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
3UTR TCA 72 bp ATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTaGGTGACAGGATGGCCCCGGCAGCCCGCGCAGAGC +
Preference number: 3 (lower is better)
Translates to: IHPGPWFCRCVH*VTGWPRQPAQS
Trigger: GCTCTGCGCGGGCTGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGAT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
3UTR TCA 72 bp ATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTaGCAGGATGGCCCCGGCAGCCCGCGCAGAGCATCT +
Preference number: 3 (lower is better)
Translates to: IQGLGSAGASTE*QDGPGSPRRAS
Trigger: AGATGCTCTGCGCGGGCTGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGAT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
3UTR TCA 72 bp TTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATaGATGGATGCAGGAGCAGAGAGCAATGATTCTGGG +
Preference number: 3 (lower is better)
Translates to: FRGQSWIWQKQE*MDAGAESNDSG
Trigger: CCCAGAATCATTGCTCTCTGCTCCTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
3UTR TCA 72 bp AAAACAAGAATGAATGGATGCAGGAGCAGAGAGCAATaGTTCTGGGTTGGTGAGGTTAATCCACTCTGGTTA +
Preference number: 3 (lower is better)
Translates to: KTRMNGCRSREQ*FWVGEVNPLWL
Trigger: TAACCAGAGTGGATTAACCTCACCAACCCAGAATCATTGCTCTCTGCTCCTGCATCCATTCATTCTTGTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
3UTR-3UTR CAA 90 bp CTGAACTTTAACCTGGAATATCTTCTTCTACATTCGCTGATTAAGTCCGTAATCATGGCACATAATCCATaGGGGACATCAGTAGATTCA +
Preference number: 3 (lower is better)
Translates to: LNFNLEYLLLHSLIKSVIMAHNP*GTSVDS
Trigger: TGAATCTACTGATGTCCCCAATGGATTATGTGCCAT...GATTACGGACTTAATCAGCGAATGTAGAAGAAGATATTCCAGGTTAAAGTTCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
3UTR TCA 72 bp CATTACAGCACTGATAAAAATAATCTGTTCTGCCACTaGACTTTAACCTGGAATATCTTCTTCTACATTCGC +
Preference number: 3 (lower is better)
Translates to: HYSTDKNNLFCH*TLTWNIFFYIR
Trigger: GCGAATGTAGAAGAAGATATTCCAGGTTAAAGTTCAGTGGCAGAACAGATTATTTTTATCAGTGCTGTAATG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CCA 90 bp CTGAGGGCGGGGCGGGAGAGGTGTCGGGGTGGTCAGAGGACAGGACAGTTGCTTGGGATCCGCTCCCATTaGCACTCGGAGCGGCAGCGC +
Preference number: 4 (lower is better)
Translates to: LRAGRERCRGGQRTGQLLGIRSH*HSERQR
Trigger: GCGCTGCCGCTCCGAGTGCCAATGGGAGCGGATCCC...AAGCAACTGTCCTGTCCTCTGACCACCCCGACACCTCTCCCGCCCCGCCCTCAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR TCA 90 bp GCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGCCCGCCGGGCCCCGGCAGAGTaGCTCCAACTTCACTTTGGA +
Preference number: 4 (lower is better)
Translates to: ALVLQVRPLSDRMAPAARRAPAE*LQLHFG
Trigger: TCCAAAGTGAAGTTGGAGTCACTCTGCCGGGGCCCG...GCGGGCTGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR TCA 90 bp CTGAGGGCGGGGCGGGAGAGGTGTCGGGGTGGTCAGAGGACAGGACAGTTGCTTGCATGTGCTTACAGGTaGGCAGCGCCTCATCCGGGC +
Preference number: 4 (lower is better)
Translates to: LRAGRERCRGGQRTGQLLACAYR*AAPHPG
Trigger: GCCCGGATGAGGCGCTGCTCACCTGTAAGCACATGC...AAGCAACTGTCCTGTCCTCTGACCACCCCGACACCTCTCCCGCCCCGCCCTCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR TCA 90 bp TCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGCTGCGTCGTTACCCTaGGCTTGGAGGACCTCGCCC +
Preference number: 4 (lower is better)
Translates to: SRALVLQVRPLSDRMAPAAASLP*AWRTSP
Trigger: GGGCGAGGTCCTCCAAGCTCAGGGTAACGACGCAGC...TGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR GCA 90 bp GCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGCCCGCCTCTGCAGGCCCTCCTaGATCCCTCGCAGAGAAGCA +
Preference number: 4 (lower is better)
Translates to: ALVLQVRPLSDRMAPAARLCRPS*IPRREA
Trigger: TGCTTCTCTGCGAGGGATGCAGGAGGGCCTGCAGAG...GCGGGCTGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR TCA 90 bp CTGAGGGCGGGGCGGGAGAGGTGTCGGGGTGGTCAGAGGACAGGACAGTTGCTTCGGGCCCCGGCAGAGTaGCTCCAACTTCACTTTGGA +
Preference number: 4 (lower is better)
Translates to: LRAGRERCRGGQRTGQLLRAPAE*LQLHFG
Trigger: TCCAAAGTGAAGTTGGAGTCACTCTGCCGGGGCCCG...AAGCAACTGTCCTGTCCTCTGACCACCCCGACACCTCTCCCGCCCCGCCCTCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp TTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGCCCGCGCAAGCTTGGCCGACAGCTaGTTGACGAGCTCGGGGATC +
Preference number: 4 (lower is better)
Translates to: LVLQVRPLSDRMAPAARASLADS*LTSSGI
Trigger: GATCCCCGAGCTCGTCAAGCAGCTGTCGGCCAAGCT...TGCGCGGGCTGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp GCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGCCCGCCAGCGGTCAGATGCTTaGGCACTTCAGTCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: ALVLQVRPLSDRMAPAARQRSDA*ALQSAG
Trigger: CCCAGCTGACTGAAGTGCGCAAGCATCTGACCGCTG...GCGGGCTGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp GCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGCCCGCAGAAGTGCCTTCCTCTaGAGGCCCTCCTGCATCCCT +
Preference number: 4 (lower is better)
Translates to: ALVLQVRPLSDRMAPAARRSAFL*RPSCIP
Trigger: AGGGATGCAGGAGGGCCTGCAGAGGAAGGCACTTCT...GCGGGCTGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp TTTGGGCTGAGGGCGGGGCGGGAGAGGTGTCGGGGTGGTCAGAGGACAGGACAGGGATGCAGTGGACCCTaGTTGGGAGCACTGCTTTGC +
Preference number: 4 (lower is better)
Translates to: FGLRAGRERCRGGQRTGQGCSGP*LGALLC
Trigger: GCAAAGCAGTGCTCCCAAGCAGGGTCCACTGCATCC...CTGTCCTGTCCTCTGACCACCCCGACACCTCTCCCGCCCCGCCCTCAGCCCAAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp GCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGCCCGCAGCGTCATCCAGGGATaGAGTGGACCCTGCTTGGGA +
Preference number: 4 (lower is better)
Translates to: ALVLQVRPLSDRMAPAARSVIQG*SGPCLG
Trigger: TCCCAAGCAGGGTCCACTGCATCCCTGGATGACGCT...GCGGGCTGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CCA 90 bp GCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGCCCGCGCAGTGGACCCTGCTTaGGAGCACTGCTTTGCAGAG +
Preference number: 4 (lower is better)
Translates to: ALVLQVRPLSDRMAPAARAVDPA*EHCFAE
Trigger: CTCTGCAAAGCAGTGCTCCCAAGCAGGGTCCACTGC...GCGGGCTGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR TCA 90 bp TTTGGGCTGAGGGCGGGGCGGGAGAGGTGTCGGGGTGGTCAGAGGACAGGACAGTATCATCGTTGGCGATaGGCTTGGCCGACAGCTGCT +
Preference number: 4 (lower is better)
Translates to: FGLRAGRERCRGGQRTGQYHRWR*AWPTAA
Trigger: AGCAGCTGTCGGCCAAGCTCATCGCCAACGATGATA...CTGTCCTGTCCTCTGACCACCCCGACACCTCTCCCGCCCCGCCCTCAGCCCAAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR TCA 90 bp CCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGAGGGTCATCCAGAGGTaGCTGGTAGGGAGGCTCCTC +
Preference number: 4 (lower is better)
Translates to: PSRALVLQVRPLSDRMAPRVIQR*LVGRLL
Trigger: GAGGAGCCTCCCTACCAGTCACCTCTGGATGACCCT...CGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR TCA 90 bp GCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGCCCGCCTTGCAGACTATACGTaGGCCCCAGAGCTAGGTAGC +
Preference number: 4 (lower is better)
Translates to: ALVLQVRPLSDRMAPAARLADYT*APELGS
Trigger: GCTACCTAGCTCTGGGGCTCACGTATAGTCTGCAAG...GCGGGCTGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp GCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGCCCGCCTGAAACGCAAGAAGTaGCTTCCTCTGCAGGCCCTC +
Preference number: 4 (lower is better)
Translates to: ALVLQVRPLSDRMAPAARLKRKK*LPLQAL
Trigger: GAGGGCCTGCAGAGGAAGGCACTTCTTGCGTTTCAG...GCGGGCTGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR TCA 90 bp TTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGCCCGCGCATATCATCGTTGGCGATaGGCTTGGCCGACAGCTGCT +
Preference number: 4 (lower is better)
Translates to: LVLQVRPLSDRMAPAARAYHRWR*AWPTAA
Trigger: AGCAGCTGTCGGCCAAGCTCATCGCCAACGATGATA...TGCGCGGGCTGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR TCA 90 bp CTGAGGGCGGGGCGGGAGAGGTGTCGGGGTGGTCAGAGGACAGGACAGTTGCTTCTTGCAGACTATACGTaGGCCCCAGAGCTAGGTAGC +
Preference number: 4 (lower is better)
Translates to: LRAGRERCRGGQRTGQLLLADYT*APELGS
Trigger: GCTACCTAGCTCTGGGGCTCACGTATAGTCTGCAAG...AAGCAACTGTCCTGTCCTCTGACCACCCCGACACCTCTCCCGCCCCGCCCTCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp CCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGAAGAGAGCCAGGAGGTaGAGGGAGTTCGCATCGTCG +
Preference number: 4 (lower is better)
Translates to: PSRALVLQVRPLSDRMAPKRARR*REFASS
Trigger: CGACGATGCGAACTCCCTGCACCTCCTGGCTCTCTT...CGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp TTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGCCCGCGCACCTGCTTGGGAGCACTaGTTTGCAGAGATGAGGCCA +
Preference number: 4 (lower is better)
Translates to: LVLQVRPLSDRMAPAARAPAWEH*FAEMRP
Trigger: TGGCCTCATCTCTGCAAAGCAGTGCTCCCAAGCAGG...TGCGCGGGCTGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR GCA 90 bp CTGAGGGCGGGGCGGGAGAGGTGTCGGGGTGGTCAGAGGACAGGACAGTTGCTTATGGAGCCAGATCTGTaGCAGCGTCATCCAGGGATG +
Preference number: 4 (lower is better)
Translates to: LRAGRERCRGGQRTGQLLMEPDL*QRHPGM
Trigger: CATCCCTGGATGACGCTGGCACAGATCTGGCTCCAT...AAGCAACTGTCCTGTCCTCTGACCACCCCGACACCTCTCCCGCCCCGCCCTCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CCA 90 bp TTTGGGCTGAGGGCGGGGCGGGAGAGGTGTCGGGGTGGTCAGAGGACAGGACAGTGCTCCCGGTCCACATaGAGATTACTGGTAGAGGAC +
Preference number: 4 (lower is better)
Translates to: FGLRAGRERCRGGQRTGQCSRST*RLLVED
Trigger: GTCCTCTACCAGTAATCTCCATGTGGACCGGGAGCA...CTGTCCTGTCCTCTGACCACCCCGACACCTCTCCCGCCCCGCCCTCAGCCCAAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CCA 90 bp CCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGCATCCAGGGATGCAGTaGACCCTGCTTGGGAGCACT +
Preference number: 4 (lower is better)
Translates to: PSRALVLQVRPLSDRMAPHPGMQ*TLLGST
Trigger: AGTGCTCCCAAGCAGGGTCCACTGCATCCCTGGATG...CGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CCA 90 bp TCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCACATCCAGGGATGCAGTaGACCCTGCTTGGGAGCACT +
Preference number: 4 (lower is better)
Translates to: SRALVLQVRPLSDRMAPAHPGMQ*TLLGST
Trigger: AGTGCTCCCAAGCAGGGTCCACTGCATCCCTGGATG...TGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CCA 90 bp CCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGTCAGGAAGCACTCGGTaGCTGCTGCGTCGTTACCCT +
Preference number: 4 (lower is better)
Translates to: PSRALVLQVRPLSDRMAPSGSTR*LLRRYP
Trigger: AGGGTAACGACGCAGCAGCCACCGAGTGCTTCCTGA...CGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR TCA 90 bp CCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGTTGGTGATCTGTAGGTaGCAGGCTATGGGCCCTCTG +
Preference number: 4 (lower is better)
Translates to: PSRALVLQVRPLSDRMAPLVICR*QAMGPL
Trigger: CAGAGGGCCCATAGCCTGTCACCTACAGATCACCAA...CGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp CTGAGGGCGGGGCGGGAGAGGTGTCGGGGTGGTCAGAGGACAGGACAGTTGCTTTTCTGTCTAAGAGGCTaGTCCCACGTCCAGAGTCAC +
Preference number: 4 (lower is better)
Translates to: LRAGRERCRGGQRTGQLLFCLRG*SHVQSH
Trigger: GTGACTCTGGACGTGGGAGCAGCCTCTTAGACAGAA...AAGCAACTGTCCTGTCCTCTGACCACCCCGACACCTCTCCCGCCCCGCCCTCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CCA 90 bp CTGAGGGCGGGGCGGGAGAGGTGTCGGGGTGGTCAGAGGACAGGACAGTTGCTTGTCGTCTGTCAGCGATaGTTCTGTCTAAGAGGCTGC +
Preference number: 4 (lower is better)
Translates to: LRAGRERCRGGQRTGQLLVVCQR*FCLRGC
Trigger: GCAGCCTCTTAGACAGAACCATCGCTGACAGACGAC...AAGCAACTGTCCTGTCCTCTGACCACCCCGACACCTCTCCCGCCCCGCCCTCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CCA 90 bp TTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGCCCGCGCAGTCGTCTGTCAGCGATaGTTCTGTCTAAGAGGCTGC +
Preference number: 4 (lower is better)
Translates to: LVLQVRPLSDRMAPAARAVVCQR*FCLRGC
Trigger: GCAGCCTCTTAGACAGAACCATCGCTGACAGACGAC...TGCGCGGGCTGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CCA 90 bp CCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGAGGCTGCTACTGATGTaGCATGGACGGAGCCTGTCT +
Preference number: 4 (lower is better)
Translates to: PSRALVLQVRPLSDRMAPRLLLM*HGRSLS
Trigger: AGACAGGCTCCGTCCATGCCACATCAGTAGCAGCCT...CGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062957.8
CDS-3UTR CCA 90 bp TTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGCCCGCGCAAGGTTGGCAGCTTCTTaGGTACAGGCTGTAGCTTCC +
Preference number: 4 (lower is better)
Translates to: LVLQVRPLSDRMAPAARARLAAS*VQAVAS
Trigger: GGAAGCTACAGCCTGTACCCAAGAAGCTGCCAACCT...TGCGCGGGCTGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CCA 90 bp GCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGCCCGCACATTGGGAAGAGGTTaGCAGCTTCTTGGGTACAGG +
Preference number: 4 (lower is better)
Translates to: ALVLQVRPLSDRMAPAARTLGRG*QLLGYR
Trigger: CCTGTACCCAAGAAGCTGCCAACCTCTTCCCAATGT...GCGGGCTGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR TCA 90 bp GTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGGCTGCGTCGTTACCCTaGGCTTGGAGGACCTCGCCC +
Preference number: 4 (lower is better)
Translates to: VTYPSRALVLQVRPLSDRAASLP*AWRTSP
Trigger: GGGCGAGGTCCTCCAAGCTCAGGGTAACGACGCAGC...CCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR GCA 90 bp CCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGCCGGCTTTAGCCGGATaGATTCCTTCAGCACCTTCA +
Preference number: 4 (lower is better)
Translates to: PSRALVLQVRPLSDRMAPPALAG*IPSAPS
Trigger: TGAAGGTGCTGAAGGAATGCATCCGGCTAAAGCCGG...CGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp TCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGAAGCATCAGTGGCTTaGAGACTATACGTGAGCCCC +
Preference number: 4 (lower is better)
Translates to: SRALVLQVRPLSDRMAPAEASVA*RLYVSP
Trigger: GGGGCTCACGTATAGTCTGCAAGCCACTGATGCTTC...TGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp TTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGCCCGCGCACATATCTGTAGCATGTaGTTACAGGTGAGCAGCGCC +
Preference number: 4 (lower is better)
Translates to: LVLQVRPLSDRMAPAARAHICSM*LQVSSA
Trigger: GGCGCTGCTCACCTGTAAGCACATGCTACAGATATG...TGCGCGGGCTGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR GCA 90 bp CTGAGGGCGGGGCGGGAGAGGTGTCGGGGTGGTCAGAGGACAGGACAGTTGCTTTTGGGAGCACTGCTTTaGAGAGATGAGGCCACTTCT +
Preference number: 4 (lower is better)
Translates to: LRAGRERCRGGQRTGQLLLGALL*RDEATS
Trigger: AGAAGTGGCCTCATCTCTGCAAAGCAGTGCTCCCAA...AAGCAACTGTCCTGTCCTCTGACCACCCCGACACCTCTCCCGCCCCGCCCTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp TTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGCCCGCGCATTGGGAGCACTGCTTTaGAGAGATGAGGCCACTTCT +
Preference number: 4 (lower is better)
Translates to: LVLQVRPLSDRMAPAARALGALL*RDEATS
Trigger: AGAAGTGGCCTCATCTCTGCAAAGCAGTGCTCCCAA...TGCGCGGGCTGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CCA 90 bp TTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGCCCGCGCATCGTCGCCTTGCAGTTaGAGAGCTTGGCGAACATAT +
Preference number: 4 (lower is better)
Translates to: LVLQVRPLSDRMAPAARASSPCS*RAWRTY
Trigger: ATATGTTCGCCAAGCTCTCCAACTGCAAGGCGACGA...TGCGCGGGCTGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CCA 90 bp TCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGTCGTCTGTCAGCGATaGTTCTGTCTAAGAGGCTGC +
Preference number: 4 (lower is better)
Translates to: SRALVLQVRPLSDRMAPAVVCQR*FCLRGC
Trigger: GCAGCCTCTTAGACAGAACCATCGCTGACAGACGAC...TGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CCA 90 bp TTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGCCCGCGCAACATTGGGAAGAGGTTaGCAGCTTCTTGGGTACAGG +
Preference number: 4 (lower is better)
Translates to: LVLQVRPLSDRMAPAARATLGRG*QLLGYR
Trigger: CCTGTACCCAAGAAGCTGCCAACCTCTTCCCAATGT...TGCGCGGGCTGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR TCA 90 bp GTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGGCATGTGCTTACAGGTaGGCAGCGCCTCATCCGGGC +
Preference number: 4 (lower is better)
Translates to: VTYPSRALVLQVRPLSDRACAYR*AAPHPG
Trigger: GCCCGGATGAGGCGCTGCTCACCTGTAAGCACATGC...CCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR TCA 90 bp TTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGCCCGCGCATGCATGCTCTTCACATaGGTAGGGCTGATGGATAAG +
Preference number: 4 (lower is better)
Translates to: LVLQVRPLSDRMAPAARACMLFT*VGLMDK
Trigger: CTTATCCATCAGCCCTACTCATGTGAAGAGCATGCA...TGCGCGGGCTGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR TCA 90 bp CCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGATGGACGGAGCTAACTaGAAAGAGGGAGGGAAAACC +
Preference number: 4 (lower is better)
Translates to: PSRALVLQVRPLSDRMAPMDGAN*KEGGKT
Trigger: GGTTTTCCCTCCCTCTTTTCAGTTAGCTCCGTCCAT...CGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR GCA 90 bp CCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGAATGTAGACCTCAGCTaGATGGAGCCAGATCTGTGC +
Preference number: 4 (lower is better)
Translates to: PSRALVLQVRPLSDRMAPNVDLS*MEPDLC
Trigger: GCACAGATCTGGCTCCATGCAGCTGAGGTCTACATT...CGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR GCA 90 bp TCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCACGAATTCACCTGCACTaGATCCCGGAGAATCTTCTC +
Preference number: 4 (lower is better)
Translates to: SRALVLQVRPLSDRMAPARIHLH*IPENLL
Trigger: GAGAAGATTCTCCGGGATGCAGTGCAGGTGAATTCG...TGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CCA 90 bp TCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCATCGTCGCCTTGCAGTTaGAGAGCTTGGCGAACATAT +
Preference number: 4 (lower is better)
Translates to: SRALVLQVRPLSDRMAPASSPCS*RAWRTY
Trigger: ATATGTTCGCCAAGCTCTCCAACTGCAAGGCGACGA...TGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR TCA 90 bp TTTGGGCTGAGGGCGGGGCGGGAGAGGTGTCGGGGTGGTCAGAGGACAGGACAGAAGTCAGTTTGGCCATaGCCAGATTGGATTCTTGTA +
Preference number: 4 (lower is better)
Translates to: FGLRAGRERCRGGQRTGQKSVWP*PDWILV
Trigger: TACAAGAATCCAATCTGGTCATGGCCAAACTGACTT...CTGTCCTGTCCTCTGACCACCCCGACACCTCTCCCGCCCCGCCCTCAGCCCAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp ACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGCACACAGAGCTTGGCTaGCAAGAGCGGGATGGTGGC +
Preference number: 4 (lower is better)
Translates to: TYPSRALVLQVRPLSDRMHTELG*QERDGG
Trigger: GCCACCATCCCGCTCTTGGCAGCCAAGCTCTGTGTG...CATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CCA 90 bp CTGAGGGCGGGGCGGGAGAGGTGTCGGGGTGGTCAGAGGACAGGACAGTTGCTTACCCTTTCTATCTCCTaGAGGTACAAGAGTGCAATG +
Preference number: 4 (lower is better)
Translates to: LRAGRERCRGGQRTGQLLTLSIS*RYKSAM
Trigger: CATTGCACTCTTGTACCTCCAGGAGATAGAAAGGGT...AAGCAACTGTCCTGTCCTCTGACCACCCCGACACCTCTCCCGCCCCGCCCTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CCA 90 bp CCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGACATTATGGGACATTaGGAAGAGGTTGGCAGCTTC +
Preference number: 4 (lower is better)
Translates to: PSRALVLQVRPLSDRMAPDIMGH*EEVGSF
Trigger: GAAGCTGCCAACCTCTTCCCAATGTCCCATAATGTC...CGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CCA 90 bp ACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGTACAGCAGGGCTGCTaGCCTCCAGTTCCAAGGCTG +
Preference number: 4 (lower is better)
Translates to: TYPSRALVLQVRPLSDRMVQQGC*PPVPRL
Trigger: CAGCCTTGGAACTGGAGGCCAGCAGCCCTGCTGTAC...CATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR TCA 90 bp ATCCACTCTGGTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTAGGGTCATCCAGAGGTaGCTGGTAGGGAGGCTCCTC +
Preference number: 4 (lower is better)
Translates to: IHSGYISIQGLGSAGASTRVIQR*LVGRLL
Trigger: GAGGAGCCTCCCTACCAGTCACCTCTGGATGACCCT...AGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAACCAGAGTGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR TCA 90 bp ATCCACTCTGGTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTCGGGCCCCGGCAGAGTaGCTCCAACTTCACTTTGGA +
Preference number: 4 (lower is better)
Translates to: IHSGYISIQGLGSAGASTRAPAE*LQLHFG
Trigger: TCCAAAGTGAAGTTGGAGTCACTCTGCCGGGGCCCG...AGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAACCAGAGTGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR TCA 90 bp GTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGGGGTCACTGAATGAATaGGCAGCAGGGGGCCACACA +
Preference number: 4 (lower is better)
Translates to: VTYPSRALVLQVRPLSDRGSLNE*AAGGHT
Trigger: TGTGTGGCCCCCTGCTGCTCATTCATTCAGTGACCC...CCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000223110.2
CDS-3UTR TCA 90 bp ACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGACCTGGGTCACTGAATaGATGAGCAGCAGGGGGCCA +
Preference number: 4 (lower is better)
Translates to: TYPSRALVLQVRPLSDRMTWVTE*MSSRGP
Trigger: TGGCCCCCTGCTGCTCATTCATTCAGTGACCCAGGT...CATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000223110.2
CDS-3UTR GCA 90 bp GTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGCAGGTGATGACGTCCTaGTCCCGGTCCACATGGAGA +
Preference number: 4 (lower is better)
Translates to: VTYPSRALVLQVRPLSDRQVMTS*SRSTWR
Trigger: TCTCCATGTGGACCGGGAGCAGGACGTCATCACCTG...CCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp ACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGAGAAGTGCCTTCCTCTaGAGGCCCTCCTGCATCCCT +
Preference number: 4 (lower is better)
Translates to: TYPSRALVLQVRPLSDRMRSAFL*RPSCIP
Trigger: AGGGATGCAGGAGGGCCTGCAGAGGAAGGCACTTCT...CATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp ACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGGATGCAGTGGACCCTaGTTGGGAGCACTGCTTTGC +
Preference number: 4 (lower is better)
Translates to: TYPSRALVLQVRPLSDRMGCSGP*LGALLC
Trigger: GCAAAGCAGTGCTCCCAAGCAGGGTCCACTGCATCC...CATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CCA 90 bp GCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGCCCGCCTAAACAAAGTCCTTTaGTTGCATAGGCTTCAGCAA +
Preference number: 4 (lower is better)
Translates to: ALVLQVRPLSDRMAPAARLNKVL*LHRLQQ
Trigger: TTGCTGAAGCCTATGCAACCAAAGGACTTTGTTTAG...GCGGGCTGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CCA 90 bp CTGGTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAACCCACACAGAGCTTaGCTGCCAAGAGCGGGATGG +
Preference number: 4 (lower is better)
Translates to: LVTYPSRALVLQVRPLSDNPHRA*LPRAGW
Trigger: CCATCCCGCTCTTGGCAGCCAAGCTCTGTGTGGGTT...GTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAACCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CCA 90 bp GTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGGCAGTGGACCCTGCTTaGGAGCACTGCTTTGCAGAG +
Preference number: 4 (lower is better)
Translates to: VTYPSRALVLQVRPLSDRAVDPA*EHCFAE
Trigger: CTCTGCAAAGCAGTGCTCCCAAGCAGGGTCCACTGC...CCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CCA 90 bp ATCCACTCTGGTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGTACAGCAGGGCTGCTaGCCTCCAGTTCCAAGGCTG +
Preference number: 4 (lower is better)
Translates to: IHSGYISIQGLGSAGASTVQQGC*PPVPRL
Trigger: CAGCCTTGGAACTGGAGGCCAGCAGCCCTGCTGTAC...AGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAACCAGAGTGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR TCA 90 bp CCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGAAGTCAGTTTGGCCATaGCCAGATTGGATTCTTGTA +
Preference number: 4 (lower is better)
Translates to: PSRALVLQVRPLSDRMAPKSVWP*PDWILV
Trigger: TACAAGAATCCAATCTGGTCATGGCCAAACTGACTT...CGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR TCA 90 bp TTTGGGCTGAGGGCGGGGCGGGAGAGGTGTCGGGGTGGTCAGAGGACAGGACAGTTAGGGCTTCTGTTCTaGATATTAGTTAGCATTACC +
Preference number: 4 (lower is better)
Translates to: FGLRAGRERCRGGQRTGQLGLLF*ILVSIT
Trigger: GGTAATGCTAACTAATATTCAGAACAGAAGCCCTAA...CTGTCCTGTCCTCTGACCACCCCGACACCTCTCCCGCCCCGCCCTCAGCCCAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp GTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGACCACAGACGCGCTTTaGAGACTGATGAGGCGGTCA +
Preference number: 4 (lower is better)
Translates to: VTYPSRALVLQVRPLSDRTTDAL*RLMRRS
Trigger: TGACCGCCTCATCAGTCTGCAAAGCGCGTCTGTGGT...CCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp ATCCACTCTGGTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTAGCGTCATCCAGGGATaGAGTGGACCCTGCTTGGGA +
Preference number: 4 (lower is better)
Translates to: IHSGYISIQGLGSAGASTSVIQG*SGPCLG
Trigger: TCCCAAGCAGGGTCCACTGCATCCCTGGATGACGCT...AGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAACCAGAGTGGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR GCA 90 bp TTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGCCCGCGCAAAAACCATGAAAGTGTaGTTCTGGAGAGTTGCAGAA +
Preference number: 4 (lower is better)
Translates to: LVLQVRPLSDRMAPAARAKTMKV*FWRVAE
Trigger: TTCTGCAACTCTCCAGAAGCACACTTTCATGGTTTT...TGCGCGGGCTGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000223110.2
CDS-3UTR CCA 90 bp ACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCTACTGATGTGGCATaGACGGAGCCTGTCTCAGGA +
Preference number: 4 (lower is better)
Translates to: TYPSRALVLQVRPLSDRMATDVA*TEPVSG
Trigger: TCCTGAGACAGGCTCCGTCCATGCCACATCAGTAGC...CATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062957.8
CDS-3UTR CCA 90 bp ATCCACTCTGGTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTCATCCAGGGATGCAGTaGACCCTGCTTGGGAGCACT +
Preference number: 4 (lower is better)
Translates to: IHSGYISIQGLGSAGASTHPGMQ*TLLGST
Trigger: AGTGCTCCCAAGCAGGGTCCACTGCATCCCTGGATG...AGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAACCAGAGTGGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CCA 90 bp ATCCACTCTGGTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTTCAGGAAGCACTCGGTaGCTGCTGCGTCGTTACCCT +
Preference number: 4 (lower is better)
Translates to: IHSGYISIQGLGSAGASTSGSTR*LLRRYP
Trigger: AGGGTAACGACGCAGCAGCCACCGAGTGCTTCCTGA...AGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAACCAGAGTGGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CCA 90 bp CCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGCAAAGATGTCAGGTTTaGGATGAGAATGAAGAGGAG +
Preference number: 4 (lower is better)
Translates to: PSRALVLQVRPLSDRMAPQRCQV*DENEEE
Trigger: CTCCTCTTCATTCTCATCCCAAACCTGACATCTTTG...CGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223110.2
CDS-3UTR TCA 90 bp CTGGTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGAGACTCCGTTCTTaGCAGAGAAGAGGAGGAGGA +
Preference number: 4 (lower is better)
Translates to: LVTYPSRALVLQVRPLSDRRLRS*QRRGGG
Trigger: TCCTCCTCCTCTTCTCTGTCAAGAACGGAGTCTCCT...GTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAACCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223110.2
CDS-3UTR GCA 90 bp ATCCACTCTGGTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTTTCGCATCGTCGCCTTaGAGTTGGAGAGCTTGGCGA +
Preference number: 4 (lower is better)
Translates to: IHSGYISIQGLGSAGASTFASSP*SWRAWR
Trigger: TCGCCAAGCTCTCCAACTGCAAGGCGACGATGCGAA...AGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAACCAGAGTGGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp ACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGTTCTGTCTAAGAGGCTaGTCCCACGTCCAGAGTCAC +
Preference number: 4 (lower is better)
Translates to: TYPSRALVLQVRPLSDRMFCLRG*SHVQSH
Trigger: GTGACTCTGGACGTGGGAGCAGCCTCTTAGACAGAA...CATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR GCA 90 bp ATCCACTCTGGTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTCCTGCTTGGGAGCACTaGTTTGCAGAGATGAGGCCA +
Preference number: 4 (lower is better)
Translates to: IHSGYISIQGLGSAGASTPAWEH*FAEMRP
Trigger: TGGCCTCATCTCTGCAAAGCAGTGCTCCCAAGCAGG...AGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAACCAGAGTGGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR GCA 90 bp CTGGTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACCTGGAGGTACAAGAGTaGAATGTCCCCAGCTTTCTC +
Preference number: 4 (lower is better)
Translates to: LVTYPSRALVLQVRPLSDLEVQE*NVPSFL
Trigger: GAGAAAGCTGGGGACATTGCACTCTTGTACCTCCAG...GTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAACCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp GTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGCATATCTGTAGCATGTaGTTACAGGTGAGCAGCGCC +
Preference number: 4 (lower is better)
Translates to: VTYPSRALVLQVRPLSDRHICSM*LQVSSA
Trigger: GGCGCTGCTCACCTGTAAGCACATGCTACAGATATG...CCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR GCA 90 bp CTGGTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACACTTCTGACAGTGCTTaGTCCACTCTTGAGGCTGCT +
Preference number: 4 (lower is better)
Translates to: LVTYPSRALVLQVRPLSDTSDSA*STLEAA
Trigger: AGCAGCCTCAAGAGTGGAGCAAGCACTGTCAGAAGT...GTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAACCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR GCA 90 bp GTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGACTTCTGACAGTGCTTaGTCCACTCTTGAGGCTGCT +
Preference number: 4 (lower is better)
Translates to: VTYPSRALVLQVRPLSDRTSDSA*STLEAA
Trigger: AGCAGCCTCAAGAGTGGAGCAAGCACTGTCAGAAGT...CCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR GCA 90 bp GTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGAATGTAGACCTCAGCTaGATGGAGCCAGATCTGTGC +
Preference number: 4 (lower is better)
Translates to: VTYPSRALVLQVRPLSDRNVDLS*MEPDLC
Trigger: GCACAGATCTGGCTCCATGCAGCTGAGGTCTACATT...CCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CCA 90 bp ATCCACTCTGGTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTAGGTTGGCAGCTTCTTaGGTACAGGCTGTAGCTTCC +
Preference number: 4 (lower is better)
Translates to: IHSGYISIQGLGSAGASTRLAAS*VQAVAS
Trigger: GGAAGCTACAGCCTGTACCCAAGAAGCTGCCAACCT...AGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAACCAGAGTGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CCA 90 bp CTGGTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACACATTGGGAAGAGGTTaGCAGCTTCTTGGGTACAGG +
Preference number: 4 (lower is better)
Translates to: LVTYPSRALVLQVRPLSDTLGRG*QLLGYR
Trigger: CCTGTACCCAAGAAGCTGCCAACCTCTTCCCAATGT...GTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAACCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR TCA 90 bp GTAGATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGTGGCCGACAGCTGCTTaGCGAGCTCGGGGATCCGCT +
Preference number: 4 (lower is better)
Translates to: VDSEDSHGSGKNKNEWMQWPTAA*RARGSA
Trigger: AGCGGATCCCCGAGCTCGTCAAGCAGCTGTCGGCCA...CTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAATCTAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR TCA 90 bp GTAGATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGCTGCGTCGTTACCCTaGGCTTGGAGGACCTCGCCC +
Preference number: 4 (lower is better)
Translates to: VDSEDSHGSGKNKNEWMQAASLP*AWRTSP
Trigger: GGGCGAGGTCCTCCAAGCTCAGGGTAACGACGCAGC...CTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAATCTAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR GCA 90 bp ACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGAGCTCTGCTCACACATaGCCCGTAACAAGATTTCTG +
Preference number: 4 (lower is better)
Translates to: TYPSRALVLQVRPLSDRMSSAHT*PVTRFL
Trigger: CAGAAATCTTGTTACGGGGCATGTGTGAGCAGAGCT...CATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp GAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGAGCAGAGACTCTGCAGGCCCTCCTaGATCCCTCGCAGAGAAGCA +
Preference number: 4 (lower is better)
Translates to: EDSHGSGKNKNEWMQEQRLCRPS*IPRREA
Trigger: TGCTTCTCTGCGAGGGATGCAGGAGGGCCTGCAGAG...TCTCTGCTCCTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp CTGGTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACGTGCTTCTGGAGAGTTaGAGAATGAAGGTTCATGGC +
Preference number: 4 (lower is better)
Translates to: LVTYPSRALVLQVRPLSDVLLES*RMKVHG
Trigger: GCCATGAACCTTCATTCTGCAACTCTCCAGAAGCAC...GTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAACCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223110.2
CDS-3UTR TCA 90 bp ACATCAGTAGATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGTGGCCGACAGCTGCTTaGCGAGCTCGGGGATCCGCT +
Preference number: 4 (lower is better)
Translates to: TSVDSEDSHGSGKNKNEWWPTAA*RARGSA
Trigger: AGCGGATCCCCGAGCTCGTCAAGCAGCTGTCGGCCA...CCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAATCTACTGATGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR TCA 90 bp GTAGATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGCATGTGCTTACAGGTaGGCAGCGCCTCATCCGGGC +
Preference number: 4 (lower is better)
Translates to: VDSEDSHGSGKNKNEWMQACAYR*AAPHPG
Trigger: GCCCGGATGAGGCGCTGCTCACCTGTAAGCACATGC...CTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAATCTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR GCA 90 bp GAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGAGCAGAGAAAGAGAGCCAGGAGGTaGAGGGAGTTCGCATCGTCG +
Preference number: 4 (lower is better)
Translates to: EDSHGSGKNKNEWMQEQRKRARR*REFASS
Trigger: CGACGATGCGAACTCCCTGCACCTCCTGGCTCTCTT...TCTCTGCTCCTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CCA 90 bp ACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGTCTTCCAAGGGCAATaGTCAGTAGATCATAGACCA +
Preference number: 4 (lower is better)
Translates to: TYPSRALVLQVRPLSDRMVFQGQ*SVDHRP
Trigger: TGGTCTATGATCTACTGACCATTGCCCTTGGAAGAC...CATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CCA 90 bp ATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGAGCGTACAGCAGGGCTGCTaGCCTCCAGTTCCAAGGCTG +
Preference number: 4 (lower is better)
Translates to: IQRTVMDLAKTRMNGCRSVQQGC*PPVPRL
Trigger: CAGCCTTGGAACTGGAGGCCAGCAGCCCTGCTGTAC...GCTCCTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR GCA 90 bp ATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGAGCCAGCGGTCAGATGCTTaGGCACTTCAGTCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: IQRTVMDLAKTRMNGCRSQRSDA*ALQSAG
Trigger: CCCAGCTGACTGAAGTGCGCAAGCATCTGACCGCTG...GCTCCTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp GAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGAGCAGAGAACCACAGACGCGCTTTaGAGACTGATGAGGCGGTCA +
Preference number: 4 (lower is better)
Translates to: EDSHGSGKNKNEWMQEQRTTDAL*RLMRRS
Trigger: TGACCGCCTCATCAGTCTGCAAAGCGCGTCTGTGGT...TCTCTGCTCCTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp GAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGAGCAGAGACTGAAACGCAAGAAGTaGCTTCCTCTGCAGGCCCTC +
Preference number: 4 (lower is better)
Translates to: EDSHGSGKNKNEWMQEQRLKRKK*LPLQAL
Trigger: GAGGGCCTGCAGAGGAAGGCACTTCTTGCGTTTCAG...TCTCTGCTCCTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp GTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGAAAACCATGAAAGTGTaGTTCTGGAGAGTTGCCTGT +
Preference number: 4 (lower is better)
Translates to: VTYPSRALVLQVRPLSDRKTMKV*FWRVAC
Trigger: ACAGGCAACTCTCCAGAAGCACACTTTCATGGTTTT...CCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223020.2
CDS-3UTR CCA 90 bp CTGAACTTTAACCTGGAATATCTTCTTCTACATTCGCTGATTAAGTCCGTAATCGGGATCCGCTCCCATTaGCACTCGGAGCGGCAGCGC +
Preference number: 4 (lower is better)
Translates to: LNFNLEYLLLHSLIKSVIGIRSH*HSERQR
Trigger: GCGCTGCCGCTCCGAGTGCCAATGGGAGCGGATCCC...GATTACGGACTTAATCAGCGAATGTAGAAGAAGATATTCCAGGTTAAAGTTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp ACATCAGTAGATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGAGCTTGGCCGACAGCTaGTTGACGAGCTCGGGGATC +
Preference number: 4 (lower is better)
Translates to: TSVDSEDSHGSGKNKNEWSLADS*LTSSGI
Trigger: GATCCCCGAGCTCGTCAAGCAGCTGTCGGCCAAGCT...CCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAATCTACTGATGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp ACATCAGTAGATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGCACACAGAGCTTGGCTaGCAAGAGCGGGATGGTGGC +
Preference number: 4 (lower is better)
Translates to: TSVDSEDSHGSGKNKNEWHTELG*QERDGG
Trigger: GCCACCATCCCGCTCTTGGCAGCCAAGCTCTGTGTG...CCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAATCTACTGATGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp GAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGAGCAGAGAGAAGCATCAGTGGCTTaGAGACTATACGTGAGCCCC +
Preference number: 4 (lower is better)
Translates to: EDSHGSGKNKNEWMQEQREASVA*RLYVSP
Trigger: GGGGCTCACGTATAGTCTGCAAGCCACTGATGCTTC...TCTCTGCTCCTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp AATATGGCACATAATCCATTGGGGACATCAGTAGATTCAGAGGACAGTCATGGAGGATGCAGTGGACCCTaGTTGGGAGCACTGCTTTGC +
Preference number: 4 (lower is better)
Translates to: NMAHNPLGTSVDSEDSHGGCSGP*LGALLC
Trigger: GCAAAGCAGTGCTCCCAAGCAGGGTCCACTGCATCC...TCCATGACTGTCCTCTGAATCTACTGATGTCCCCAATGGATTATGTGCCATATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CCA 90 bp GAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGAGCAGAGAGACAGCATCTCATACTaGCCTCGTCTTCCAAGGGCA +
Preference number: 4 (lower is better)
Translates to: EDSHGSGKNKNEWMQEQRDSISY*PRLPRA
Trigger: TGCCCTTGGAAGACGAGGCCAGTATGAGATGCTGTC...TCTCTGCTCCTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CCA 90 bp GTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGAGGATCGCTGAAGTCTaGCAAAGTGATTGTATTAAG +
Preference number: 4 (lower is better)
Translates to: VTYPSRALVLQVRPLSDRRIAEV*QSDCIK
Trigger: CTTAATACAATCACTTTGCCAGACTTCAGCGATCCT...CCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CCA 90 bp AATATGGCACATAATCCATTGGGGACATCAGTAGATTCAGAGGACAGTCATGGACCGTTCCAGACCTCGTaGGCTGTCGAATTCACCTGC +
Preference number: 4 (lower is better)
Translates to: NMAHNPLGTSVDSEDSHGPFQTS*AVEFTC
Trigger: GCAGGTGAATTCGACAGCCCACGAGGTCTGGAACGG...TCCATGACTGTCCTCTGAATCTACTGATGTCCCCAATGGATTATGTGCCATATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR TCA 90 bp GTAGATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGTTGGTGATCTGTAGGTaGCAGGCTATGGGCCCTCTG +
Preference number: 4 (lower is better)
Translates to: VDSEDSHGSGKNKNEWMQLVICR*QAMGPL
Trigger: CAGAGGGCCCATAGCCTGTCACCTACAGATCACCAA...CTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAATCTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp GAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGAGCAGAGAGGCTTCTCCTTCAAGTaGTGTTCCAGTTTCGACTCC +
Preference number: 4 (lower is better)
Translates to: EDSHGSGKNKNEWMQEQRGFSFK*CSSFDS
Trigger: GGAGTCGAAACTGGAACAGCACTTGAAGGAGAAGCC...TCTCTGCTCCTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp GTAGATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGCCTGCTTGGGAGCACTaGTTTGCAGAGATGAGGCCA +
Preference number: 4 (lower is better)
Translates to: VDSEDSHGSGKNKNEWMQPAWEH*FAEMRP
Trigger: TGGCCTCATCTCTGCAAAGCAGTGCTCCCAAGCAGG...CTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAATCTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR GCA 90 bp GTAGATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGATGGAGCCAGATCTGTaGCAGCGTCATCCAGGGATG +
Preference number: 4 (lower is better)
Translates to: VDSEDSHGSGKNKNEWMQMEPDL*QRHPGM
Trigger: CATCCCTGGATGACGCTGGCACAGATCTGGCTCCAT...CTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAATCTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR GCA 90 bp GAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGAGCAGAGAAATGTAGACCTCAGCTaGATGGAGCCAGATCTGTGC +
Preference number: 4 (lower is better)
Translates to: EDSHGSGKNKNEWMQEQRNVDLS*MEPDLC
Trigger: GCACAGATCTGGCTCCATGCAGCTGAGGTCTACATT...TCTCTGCTCCTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CCA 90 bp ATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGAGCGACAGCATCTCATACTaGCCTCGTCTTCCAAGGGCA +
Preference number: 4 (lower is better)
Translates to: IQRTVMDLAKTRMNGCRSDSISY*PRLPRA
Trigger: TGCCCTTGGAAGACGAGGCCAGTATGAGATGCTGTC...GCTCCTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CCA 90 bp ACATCAGTAGATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGAACCCACACAGAGCTTaGCTGCCAAGAGCGGGATGG +
Preference number: 4 (lower is better)
Translates to: TSVDSEDSHGSGKNKNEWNPHRA*LPRAGW
Trigger: CCATCCCGCTCTTGGCAGCCAAGCTCTGTGTGGGTT...CCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAATCTACTGATGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CCA 90 bp ATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGAGCAGGTTGGCAGCTTCTTaGGTACAGGCTGTAGCTTCC +
Preference number: 4 (lower is better)
Translates to: IQRTVMDLAKTRMNGCRSRLAAS*VQAVAS
Trigger: GGAAGCTACAGCCTGTACCCAAGAAGCTGCCAACCT...GCTCCTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CCA 90 bp ACATCAGTAGATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGCCGTTCCAGACCTCGTaGGCTGTCGAATTCACCTGC +
Preference number: 4 (lower is better)
Translates to: TSVDSEDSHGSGKNKNEWPFQTS*AVEFTC
Trigger: GCAGGTGAATTCGACAGCCCACGAGGTCTGGAACGG...CCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAATCTACTGATGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR TCA 90 bp ACATCAGTAGATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGGTAGGAATTCTGACTTaGGGTTCCCTCGGTCCAGGG +
Preference number: 4 (lower is better)
Translates to: TSVDSEDSHGSGKNKNEWVGILT*GSLGPG
Trigger: CCCTGGACCGAGGGAACCTCAAGTCAGAATTCCTAC...CCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAATCTACTGATGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp ACATCAGTAGATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGTTCGCATCGTCGCCTTaGAGTTGGAGAGCTTGGCGA +
Preference number: 4 (lower is better)
Translates to: TSVDSEDSHGSGKNKNEWFASSP*SWRAWR
Trigger: TCGCCAAGCTCTCCAACTGCAAGGCGACGATGCGAA...CCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAATCTACTGATGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp GTAGATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGTTCTGTCTAAGAGGCTaGTCCCACGTCCAGAGTCAC +
Preference number: 4 (lower is better)
Translates to: VDSEDSHGSGKNKNEWMQFCLRG*SHVQSH
Trigger: GTGACTCTGGACGTGGGAGCAGCCTCTTAGACAGAA...CTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAATCTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR GCA 90 bp ATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGAGCACTTCTGACAGTGCTTaGTCCACTCTTGAGGCTGCT +
Preference number: 4 (lower is better)
Translates to: IQRTVMDLAKTRMNGCRSTSDSA*STLEAA
Trigger: AGCAGCCTCAAGAGTGGAGCAAGCACTGTCAGAAGT...GCTCCTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR GCA 90 bp ACATCAGTAGATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGGAGCCAGATCTGTaGCAGCGTCATCCAGGGATG +
Preference number: 4 (lower is better)
Translates to: TSVDSEDSHGSGKNKNEWMEPDL*QRHPGM
Trigger: CATCCCTGGATGACGCTGGCACAGATCTGGCTCCAT...CCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAATCTACTGATGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR GCA 90 bp ATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGAGCCGAATTCACCTGCACTaGATCCCGGAGAATCTTCTC +
Preference number: 4 (lower is better)
Translates to: IQRTVMDLAKTRMNGCRSRIHLH*IPENLL
Trigger: GAGAAGATTCTCCGGGATGCAGTGCAGGTGAATTCG...GCTCCTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CCA 90 bp GAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGAGCAGAGAGACATTATGGGACATTaGGAAGAGGTTGGCAGCTTC +
Preference number: 4 (lower is better)
Translates to: EDSHGSGKNKNEWMQEQRDIMGH*EEVGSF
Trigger: GAAGCTGCCAACCTCTTCCCAATGTCCCATAATGTC...TCTCTGCTCCTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR GCA 90 bp CTGAACTTTAACCTGGAATATCTTCTTCTACATTCGCTGATTAAGTCCGTAATCCAGGTGATGACGTCCTaGTCCCGGTCCACATGGAGA +
Preference number: 4 (lower is better)
Translates to: LNFNLEYLLLHSLIKSVIQVMTS*SRSTWR
Trigger: TCTCCATGTGGACCGGGAGCAGGACGTCATCACCTG...GATTACGGACTTAATCAGCGAATGTAGAAGAAGATATTCCAGGTTAAAGTTCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp ATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGAGCAGCTCTGCTCACACATaGCCCGTAACAAGATTTCTG +
Preference number: 4 (lower is better)
Translates to: IQRTVMDLAKTRMNGCRSSSAHT*PVTRFL
Trigger: CAGAAATCTTGTTACGGGGCATGTGTGAGCAGAGCT...GCTCCTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp ACATCAGTAGATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGCCGGCTTTAGCCGGATaGATTCCTTCAGCACCTTCA +
Preference number: 4 (lower is better)
Translates to: TSVDSEDSHGSGKNKNEWPALAG*IPSAPS
Trigger: TGAAGGTGCTGAAGGAATGCATCCGGCTAAAGCCGG...CCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAATCTACTGATGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR GCA 90 bp GTAGATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGCATATCTGTAGCATGTaGTTACAGGTGAGCAGCGCC +
Preference number: 4 (lower is better)
Translates to: VDSEDSHGSGKNKNEWMQHICSM*LQVSSA
Trigger: GGCGCTGCTCACCTGTAAGCACATGCTACAGATATG...CTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAATCTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CCA 90 bp CTGAACTTTAACCTGGAATATCTTCTTCTACATTCGCTGATTAAGTCCGTAATCGCAGTGGACCCTGCTTaGGAGCACTGCTTTGCAGAG +
Preference number: 4 (lower is better)
Translates to: LNFNLEYLLLHSLIKSVIAVDPA*EHCFAE
Trigger: CTCTGCAAAGCAGTGCTCCCAAGCAGGGTCCACTGC...GATTACGGACTTAATCAGCGAATGTAGAAGAAGATATTCCAGGTTAAAGTTCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CCA 90 bp ATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGAGCGACATTATGGGACATTaGGAAGAGGTTGGCAGCTTC +
Preference number: 4 (lower is better)
Translates to: IQRTVMDLAKTRMNGCRSDIMGH*EEVGSF
Trigger: GAAGCTGCCAACCTCTTCCCAATGTCCCATAATGTC...GCTCCTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CCA 90 bp CTGAACTTTAACCTGGAATATCTTCTTCTACATTCGCTGATTAAGTCCGTAATCTCAGGAAGCACTCGGTaGCTGCTGCGTCGTTACCCT +
Preference number: 4 (lower is better)
Translates to: LNFNLEYLLLHSLIKSVISGSTR*LLRRYP
Trigger: AGGGTAACGACGCAGCAGCCACCGAGTGCTTCCTGA...GATTACGGACTTAATCAGCGAATGTAGAAGAAGATATTCCAGGTTAAAGTTCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR TCA 90 bp ACATCAGTAGATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGGACGGAGCTAACTaGAAAGAGGGAGGGAAAACC +
Preference number: 4 (lower is better)
Translates to: TSVDSEDSHGSGKNKNEWMDGAN*KEGGKT
Trigger: GGTTTTCCCTCCCTCTTTTCAGTTAGCTCCGTCCAT...CCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAATCTACTGATGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR GCA 90 bp ACATCAGTAGATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGTTGGGAGCACTGCTTTaGAGAGATGAGGCCACTTCT +
Preference number: 4 (lower is better)
Translates to: TSVDSEDSHGSGKNKNEWLGALL*RDEATS
Trigger: AGAAGTGGCCTCATCTCTGCAAAGCAGTGCTCCCAA...CCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAATCTACTGATGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CCA 90 bp ATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGAGCGTCTTCCAAGGGCAATaGTCAGTAGATCATAGACCA +
Preference number: 4 (lower is better)
Translates to: IQRTVMDLAKTRMNGCRSVFQGQ*SVDHRP
Trigger: TGGTCTATGATCTACTGACCATTGCCCTTGGAAGAC...GCTCCTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CCA 90 bp AATATGGCACATAATCCATTGGGGACATCAGTAGATTCAGAGGACAGTCATGGAACCCTTTCTATCTCCTaGAGGTACAAGAGTGCAATG +
Preference number: 4 (lower is better)
Translates to: NMAHNPLGTSVDSEDSHGTLSIS*RYKSAM
Trigger: CATTGCACTCTTGTACCTCCAGGAGATAGAAAGGGT...TCCATGACTGTCCTCTGAATCTACTGATGTCCCCAATGGATTATGTGCCATATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CCA 90 bp GAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGAGCAGAGAAGGATCGCTGAAGTCTaGCAAAGTGATTGTATTAAG +
Preference number: 4 (lower is better)
Translates to: EDSHGSGKNKNEWMQEQRRIAEV*QSDCIK
Trigger: CTTAATACAATCACTTTGCCAGACTTCAGCGATCCT...TCTCTGCTCCTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CCA 90 bp ACATCAGTAGATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGGAAGACACAAACAGGTaGAGAGGAGACTCCGTTCTT +
Preference number: 4 (lower is better)
Translates to: TSVDSEDSHGSGKNKNEWEDTNR*RGDSVL
Trigger: AAGAACGGAGTCTCCTCTCCACCTGTTTGTGTCTTC...CCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAATCTACTGATGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000223110.2
CDS-3UTR CCA 90 bp ATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGAGCCTAAACAAAGTCCTTTaGTTGCATAGGCTTCAGCAA +
Preference number: 4 (lower is better)
Translates to: IQRTVMDLAKTRMNGCRSLNKVL*LHRLQQ
Trigger: TTGCTGAAGCCTATGCAACCAAAGGACTTTGTTTAG...GCTCCTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CCA 90 bp ATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGAGCAGGATCGCTGAAGTCTaGCAAAGTGATTGTATTAAG +
Preference number: 4 (lower is better)
Translates to: IQRTVMDLAKTRMNGCRSRIAEV*QSDCIK
Trigger: CTTAATACAATCACTTTGCCAGACTTCAGCGATCCT...GCTCCTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR TCA 90 bp GTAGATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGTTAGGGCTTCTGTTCTaGATATTAGTTAGCATTACC +
Preference number: 4 (lower is better)
Translates to: VDSEDSHGSGKNKNEWMQLGLLF*ILVSIT
Trigger: GGTAATGCTAACTAATATTCAGAACAGAAGCCCTAA...CTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAATCTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp TCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGGGGATCCGCTCCCATaGGCACTCGGAGCGGCAGCG +
Preference number: 5 (lower is better)
Translates to: SRALVLQVRPLSDRMAPAGDPLP*ALGAAA
Trigger: CGCTGCCGCTCCGAGTGCCAATGGGAGCGGATCCCC...TGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp TTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGCCCGCGCAGCAGCGGTCAGATGCTaGCGCACTTCAGTCAGCTGG +
Preference number: 5 (lower is better)
Translates to: LVLQVRPLSDRMAPAARAAAVRC*RTSVSW
Trigger: CCAGCTGACTGAAGTGCGCAAGCATCTGACCGCTGC...TGCGCGGGCTGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp TCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGCAGCGGTCAGATGCTaGCGCACTTCAGTCAGCTGG +
Preference number: 5 (lower is better)
Translates to: SRALVLQVRPLSDRMAPAAAVRC*RTSVSW
Trigger: CCAGCTGACTGAAGTGCGCAAGCATCTGACCGCTGC...TGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp CCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGTTCGCATCGTCGCCTaGCAGTTGGAGAGCTTGGCG +
Preference number: 5 (lower is better)
Translates to: PSRALVLQVRPLSDRMAPVRIVA*QLESLA
Trigger: CGCCAAGCTCTCCAACTGCAAGGCGACGATGCGAAC...CGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp GCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGCCCGCGAGGTTGGCAGCTTCTaGGGTACAGGCTGTAGCTTC +
Preference number: 5 (lower is better)
Translates to: ALVLQVRPLSDRMAPAAREVGSF*GTGCSF
Trigger: GAAGCTACAGCCTGTACCCAAGAAGCTGCCAACCTC...GCGGGCTGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CAA 90 bp TTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGCCCGCGCATCAGCCATATCATCGTaGGCGATGAGCTTGGCCGAC +
Preference number: 5 (lower is better)
Translates to: LVLQVRPLSDRMAPAARASAISS*AMSLAD
Trigger: GTCGGCCAAGCTCATCGCCAACGATGATATGGCTGA...TGCGCGGGCTGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp TTTGGGCTGAGGGCGGGGCGGGAGAGGTGTCGGGGTGGTCAGAGGACAGGACAGATGAGGCGGTCACTCTaGTGTTCCGGAATTCTGCTC +
Preference number: 5 (lower is better)
Translates to: FGLRAGRERCRGGQRTGQMRRSL*CSGILL
Trigger: GAGCAGAATTCCGGAACACAAGAGTGACCGCCTCAT...CTGTCCTGTCCTCTGACCACCCCGACACCTCTCCCGCCCCGCCCTCAGCCCAAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp TTTGGGCTGAGGGCGGGGCGGGAGAGGTGTCGGGGTGGTCAGAGGACAGGACAGATCGTCGCCTTGCAGTaGGAGAGCTTGGCGAACATA +
Preference number: 5 (lower is better)
Translates to: FGLRAGRERCRGGQRTGQIVALQ*ESLANI
Trigger: TATGTTCGCCAAGCTCTCCAACTGCAAGGCGACGAT...CTGTCCTGTCCTCTGACCACCCCGACACCTCTCCCGCCCCGCCCTCAGCCCAAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS CCA 90 bp ACCAGTGGAGGGAACCCACACAGAGCTTGGCTGCCAAGAGCGGGATaGTGGCGTCGTCCGGCTTTAGCCGGATGCATTCCTTCAGCACCT +
Preference number: 5 (lower is better)
Translates to: TSGGNPHRAWLPRAG*WRRPALAGCIPSAP
Trigger: AGGTGCTGAAGGAATGCATCCGGCTAAAGCCGGACGACGCCACCATCCCGCTCTTGGCAGCCAAGCTCTGTGTGGGTTCCCTCCACTGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp CCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGTCAGCCATATCATCGTaGGCGATGAGCTTGGCCGAC +
Preference number: 5 (lower is better)
Translates to: PSRALVLQVRPLSDRMAPSAISS*AMSLAD
Trigger: GTCGGCCAAGCTCATCGCCAACGATGATATGGCTGA...CGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp CTGAGGGCGGGGCGGGAGAGGTGTCGGGGTGGTCAGAGGACAGGACAGTTGCTTTGTAGGAATTCTGACTaGAGGTTCCCTCGGTCCAGG +
Preference number: 5 (lower is better)
Translates to: LRAGRERCRGGQRTGQLLCRNSD*RFPRSR
Trigger: CCTGGACCGAGGGAACCTCAAGTCAGAATTCCTACA...AAGCAACTGTCCTGTCCTCTGACCACCCCGACACCTCTCCCGCCCCGCCCTCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp TTTGGGCTGAGGGCGGGGCGGGAGAGGTGTCGGGGTGGTCAGAGGACAGGACAGTGCGTAGGTTTTGTGTaGTTCTTGTCTCCACGGCTC +
Preference number: 5 (lower is better)
Translates to: FGLRAGRERCRGGQRTGQCVGFV*FLSPRL
Trigger: GAGCCGTGGAGACAAGAACAACACAAAACCTACGCA...CTGTCCTGTCCTCTGACCACCCCGACACCTCTCCCGCCCCGCCCTCAGCCCAAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp GCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAGCCCGCGGACATTATGGGACATaGGGAAGAGGTTGGCAGCTT +
Preference number: 5 (lower is better)
Translates to: ALVLQVRPLSDRMAPAARGHYGT*GRGWQL
Trigger: AAGCTGCCAACCTCTTCCCAATGTCCCATAATGTCC...GCGGGCTGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS TCA 90 bp GTAGGCCTTCGTGTTTGCTCCTTTCCGGAGAGGGTCATCCAGAGGTaGCTGGTAGGGAGGCTCCTCCAGAGGGCTCCAGTAGCTCTGCTC +
Preference number: 5 (lower is better)
Translates to: VGLRVCSFPERVIQR*LVGRLLQRAPVALL
Trigger: GAGCAGAGCTACTGGAGCCCTCTGGAGGAGCCTCCCTACCAGTCACCTCTGGATGACCCTCTCCGGAAAGGAGCAAACACGAAGGCCTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS GCA 90 bp AGAAGTTCAGCCATATCATCGTTGGCGATGAGCTTGGCCGACAGCTaGTTGACGAGCTCGGGGATCCGCTCCCATTGGCACTCGGAGCGG +
Preference number: 5 (lower is better)
Translates to: RSSAISSLAMSLADS*LTSSGIRSHWHSER
Trigger: CCGCTCCGAGTGCCAATGGGAGCGGATCCCCGAGCTCGTCAAGCAGCTGTCGGCCAAGCTCATCGCCAACGATGATATGGCTGAACTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS CCA 90 bp AGTGGAGGGAACCCACACAGAGCTTGGCTGCCAAGAGCGGGATGGTaGCGTCGTCCGGCTTTAGCCGGATGCATTCCTTCAGCACCTTCA +
Preference number: 5 (lower is better)
Translates to: SGGNPHRAWLPRAGW*RRPALAGCIPSAPS
Trigger: TGAAGGTGCTGAAGGAATGCATCCGGCTAAAGCCGGACGACGCCACCATCCCGCTCTTGGCAGCCAAGCTCTGTGTGGGTTCCCTCCACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp GTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGTTGGCCGACAGCTGCTaGACGAGCTCGGGGATCCGC +
Preference number: 5 (lower is better)
Translates to: VTYPSRALVLQVRPLSDRLADSC*TSSGIR
Trigger: GCGGATCCCCGAGCTCGTCAAGCAGCTGTCGGCCAA...CCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS GCA 90 bp GTGCCAGCGTCATCCAGGGATGCAGTGGACCCTGCTTGGGAGCACTaGTTTGCAGAGATGAGGCCACTTCTGACAGTGCTTGCTCCACTC +
Preference number: 5 (lower is better)
Translates to: VPASSRDAVDPAWEH*FAEMRPLLTVLAPL
Trigger: GAGTGGAGCAAGCACTGTCAGAAGTGGCCTCATCTCTGCAAAGCAGTGCTCCCAAGCAGGGTCCACTGCATCCCTGGATGACGCTGGCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CAA 90 bp ATCCACTCTGGTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTTTGGCCGACAGCTGCTaGACGAGCTCGGGGATCCGC +
Preference number: 5 (lower is better)
Translates to: IHSGYISIQGLGSAGASTLADSC*TSSGIR
Trigger: GCGGATCCCCGAGCTCGTCAAGCAGCTGTCGGCCAA...AGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAACCAGAGTGGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp ATCCACTCTGGTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGTCGTTACCCTGAGCTaGGAGGACCTCGCCCAGCCC +
Preference number: 5 (lower is better)
Translates to: IHSGYISIQGLGSAGASTVVTLS*EDLAQP
Trigger: GGGCTGGGCGAGGTCCTCCAAGCTCAGGGTAACGAC...AGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAACCAGAGTGGAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS GCA 90 bp GGCTGTAGCTTCCGCAGGCTTTCCAATGCCAATGTAGACCTCAGCTaGATGGAGCCAGATCTGTGCCAGCGTCATCCAGGGATGCAGTGG +
Preference number: 5 (lower is better)
Translates to: GCSFRRLSNANVDLS*MEPDLCQRHPGMQW
Trigger: CCACTGCATCCCTGGATGACGCTGGCACAGATCTGGCTCCATGCAGCTGAGGTCTACATTGGCATTGGAAAGCCTGCGGAAGCTACAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CAA 90 bp GTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGGTTCGCATCGTCGCCTaGCAGTTGGAGAGCTTGGCG +
Preference number: 5 (lower is better)
Translates to: VTYPSRALVLQVRPLSDRVRIVA*QLESLA
Trigger: CGCCAAGCTCTCCAACTGCAAGGCGACGATGCGAAC...CCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS TCA 90 bp GGCGAGCTGCAGAGCCAGGTAGAAAGCTGCTTGGTGATCTGTAGGTaGCAGGCTATGGGCCCTCTGAAACGCAAGAAGTGCCTTCCTCTG +
Preference number: 5 (lower is better)
Translates to: GELQSQVESCLVICR*QAMGPLKRKKCLPL
Trigger: CAGAGGAAGGCACTTCTTGCGTTTCAGAGGGCCCATAGCCTGTCACCTACAGATCACCAAGCAGCTTTCTACCTGGCTCTGCAGCTCGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp ATCCACTCTGGTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAACCCACACAGAGCTaGGCTGCCAAGAGCGGGATG +
Preference number: 5 (lower is better)
Translates to: IHSGYISIQGLGSAGASTEPTQS*AAKSGM
Trigger: CATCCCGCTCTTGGCAGCCAAGCTCTGTGTGGGTTC...AGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAACCAGAGTGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS GCA 90 bp TTGGGAGCACTGCTTTGCAGAGATGAGGCCACTTCTGACAGTGCTTaGTCCACTCTTGAGGCTGCTACTGATGTGGCATGGACGGAGCCT +
Preference number: 5 (lower is better)
Translates to: LGALLCRDEATSDSA*STLEAATDVAWTEP
Trigger: AGGCTCCGTCCATGCCACATCAGTAGCAGCCTCAAGAGTGGAGCAAGCACTGTCAGAAGTGGCCTCATCTCTGCAAAGCAGTGCTCCCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062957.8
CDS CCA 90 bp AGGAGGTGCAGGGAGTTCGCATCGTCGCCTTGCAGTTGGAGAGCTTaGCGAACATATCCTAGAGCTTCTGGTATCTGTCTGGAGATGGCG +
Preference number: 5 (lower is better)
Translates to: RRCREFASSPCSWRA*RTYPRASGICLEMA
Trigger: CGCCATCTCCAGACAGATACCAGAAGCTCTAGGATATGTTCGCCAAGCTCTCCAACTGCAAGGCGACGATGCGAACTCCCTGCACCTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS CCA 90 bp AAGCTCAGCAACCTGGCCCCGCATGTAGAGGACATTATGGGACATTaGGAAGAGGTTGGCAGCTTCTTGGGTACAGGCTGTAGCTTCCGC +
Preference number: 5 (lower is better)
Translates to: KLSNLAPHVEDIMGH*EEVGSFLGTGCSFR
Trigger: GCGGAAGCTACAGCCTGTACCCAAGAAGCTGCCAACCTCTTCCCAATGTCCCATAATGTCCTCTACATGCGGGGCCAGGTTGCTGAGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CAA 90 bp CCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGTTGGCCATGACCAGATaGGATTCTTGTAGGAATTCT +
Preference number: 5 (lower is better)
Translates to: PSRALVLQVRPLSDRMAPLAMTR*DSCRNS
Trigger: AGAATTCCTACAAGAATCCAATCTGGTCATGGCCAA...CGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp TCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGGCCCCGGCAACATCAACAACAGTTTaGGCAAACTTCTCAGCCTCT +
Preference number: 5 (lower is better)
Translates to: SRALVLQVRPLSDRMAPATSTTV*ANFSAS
Trigger: AGAGGCTGAGAAGTTTGCCAAAACTGTTGTTGATGT...TGCCGGGGCCATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS TCA 90 bp CTGGAGAGTTGCAGAATGAAGGTTCATGGCGGGGACCTGGGTCACTaGATGAATGAGCAGCAGGGGGCCACACAAAGATGTCAGGTTTGG +
Preference number: 5 (lower is better)
Translates to: LESCRMKVHGGDLGH*MNEQQGATQRCQVW
Trigger: CCAAACCTGACATCTTTGTGTGGCCCCCTGCTGCTCATTCATTCAGTGACCCAGGTCCCCGCCATGAACCTTCATTCTGCAACTCTCCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000223110.2
CDS GCA 90 bp GACAACAAGAGAGCCAGGAGGTGCAGGGAGTTCGCATCGTCGCCTTaGAGTTGGAGAGCTTGGCGAACATATCCTAGAGCTTCTGGTATC +
Preference number: 5 (lower is better)
Translates to: DNKRARRCREFASSP*SWRAWRTYPRASGI
Trigger: GATACCAGAAGCTCTAGGATATGTTCGCCAAGCTCTCCAACTGCAAGGCGACGATGCGAACTCCCTGCACCTCCTGGCTCTCTTGTTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS GCA 90 bp TTGGGAGCACTGCTTTGCAGAGATGAGGCCACTTCTGACAGTGCTTaGTCCACTCTTGAGGCTGCTACTGATGTGGCATGGACGGAGCTA +
Preference number: 5 (lower is better)
Translates to: LGALLCRDEATSDSA*STLEAATDVAWTEL
Trigger: TAGCTCCGTCCATGCCACATCAGTAGCAGCCTCAAGAGTGGAGCAAGCACTGTCAGAAGTGGCCTCATCTCTGCAAAGCAGTGCTCCCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS CCA 90 bp AAGAGAGCCAGGAGGTGCAGGGAGTTCGCATCGTCGCCTTGCAGTTaGAGAGCTTGGCGAACATATCCTAGAGCTTCTGGTATCTGTCTG +
Preference number: 5 (lower is better)
Translates to: KRARRCREFASSPCS*RAWRTYPRASGICL
Trigger: CAGACAGATACCAGAAGCTCTAGGATATGTTCGCCAAGCTCTCCAACTGCAAGGCGACGATGCGAACTCCCTGCACCTCCTGGCTCTCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp GTAGATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGGGGATCCGCTCCCATaGGCACTCGGAGCGGCAGCG +
Preference number: 5 (lower is better)
Translates to: VDSEDSHGSGKNKNEWMQGDPLP*ALGAAA
Trigger: CGCTGCCGCTCCGAGTGCCAATGGGAGCGGATCCCC...CTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAATCTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp ACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGAGAAGCATCAGTGGCTaGCAGACTATACGTGAGCCC +
Preference number: 5 (lower is better)
Translates to: TYPSRALVLQVRPLSDRMRSISG*QTIREP
Trigger: GGGCTCACGTATAGTCTGCAAGCCACTGATGCTTCT...CATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp ATCCACTCTGGTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTAGAAGCATCAGTGGCTaGCAGACTATACGTGAGCCC +
Preference number: 5 (lower is better)
Translates to: IHSGYISIQGLGSAGASTRSISG*QTIREP
Trigger: GGGCTCACGTATAGTCTGCAAGCCACTGATGCTTCT...AGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAACCAGAGTGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp CTGGTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACGGACATTATGGGACATaGGGAAGAGGTTGGCAGCTT +
Preference number: 5 (lower is better)
Translates to: LVTYPSRALVLQVRPLSDGHYGT*GRGWQL
Trigger: AAGCTGCCAACCTCTTCCCAATGTCCCATAATGTCC...GTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAACCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CAA 90 bp GAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGAGCAGAGATCGTTGGCGATGAGCTaGGCCGACAGCTGCTTGACG +
Preference number: 5 (lower is better)
Translates to: EDSHGSGKNKNEWMQEQRSLAMS*ADSCLT
Trigger: CGTCAAGCAGCTGTCGGCCAAGCTCATCGCCAACGA...TCTCTGCTCCTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp AATATGGCACATAATCCATTGGGGACATCAGTAGATTCAGAGGACAGTCATGGAGTCGTTACCCTGAGCTaGGAGGACCTCGCCCAGCCC +
Preference number: 5 (lower is better)
Translates to: NMAHNPLGTSVDSEDSHGVVTLS*EDLAQP
Trigger: GGGCTGGGCGAGGTCCTCCAAGCTCAGGGTAACGAC...TCCATGACTGTCCTCTGAATCTACTGATGTCCCCAATGGATTATGTGCCATATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS CCA 90 bp AGCTCTGCTCACACATGCCCCGTAACAAGATTTCTGCCAACTGCCTaGCTATCGTCATGCGTAGGTTTTGTGTTGTTCTTGTCTCCACGG +
Preference number: 5 (lower is better)
Translates to: SSAHTCPVTRFLPTA*LSSCVGFVLFLSPR
Trigger: CCGTGGAGACAAGAACAACACAAAACCTACGCATGACGATAGCCAGGCAGTTGGCAGAAATCTTGTTACGGGGCATGTGTGAGCAGAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp ATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGAGCGACCACAGACGCGCTTaGCAGACTGATGAGGCGGTC +
Preference number: 5 (lower is better)
Translates to: IQRTVMDLAKTRMNGCRSDHRRA*QTDEAV
Trigger: GACCGCCTCATCAGTCTGCAAAGCGCGTCTGTGGTC...GCTCCTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp ACATCAGTAGATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGGTCGTTACCCTGAGCTaGGAGGACCTCGCCCAGCCC +
Preference number: 5 (lower is better)
Translates to: TSVDSEDSHGSGKNKNEWVVTLS*EDLAQP
Trigger: GGGCTGGGCGAGGTCCTCCAAGCTCAGGGTAACGAC...CCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAATCTACTGATGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CAA 90 bp GTTACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGAACAAAGTCCTTTGGTaGCATAGGCTTCAGCAATCA +
Preference number: 5 (lower is better)
Translates to: VTYPSRALVLQVRPLSDRNKVLW*HRLQQS
Trigger: TGATTGCTGAAGCCTATGCAACCAAAGGACTTTGTT...CCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGTAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp ACATATCCATCCAGGGCCTTGGTTCTGCAGGTGCGTCCACTGAGTGACAGGATGACATCAACAACAGTTTaGGCAAACTTCTCAGCCTCT +
Preference number: 5 (lower is better)
Translates to: TYPSRALVLQVRPLSDRMTSTTV*ANFSAS
Trigger: AGAGGCTGAGAAGTTTGCCAAAACTGTTGTTGATGT...CATCCTGTCACTCAGTGGACGCACCTGCAGAACCAAGGCCCTGGATGGATATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp ACATCAGTAGATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGGAACCCACACAGAGCTaGGCTGCCAAGAGCGGGATG +
Preference number: 5 (lower is better)
Translates to: TSVDSEDSHGSGKNKNEWEPTQS*AAKSGM
Trigger: CATCCCGCTCTTGGCAGCCAAGCTCTGTGTGGGTTC...CCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAATCTACTGATGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp ATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGAGCGAGGTTGGCAGCTTCTaGGGTACAGGCTGTAGCTTC +
Preference number: 5 (lower is better)
Translates to: IQRTVMDLAKTRMNGCRSEVGSF*GTGCSF
Trigger: GAAGCTACAGCCTGTACCCAAGAAGCTGCCAACCTC...GCTCCTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS CCA 90 bp AAAGTGTGCTTCTGGAGAGTTGCCTGTCTCAGGATCGCTGAAGTCTaGCAAAGTGATTGTATTAAGCTGTCGTCTGTCAGCGATGGTTCT +
Preference number: 5 (lower is better)
Translates to: KVCFWRVACLRIAEV*QSDCIKLSSVSDGS
Trigger: AGAACCATCGCTGACAGACGACAGCTTAATACAATCACTTTGCCAGACTTCAGCGATCCTGAGACAGGCAACTCTCCAGAAGCACACTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp ATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGAGCATGAGGCGGTCACTCTaGTGTTCCGGAATTCTGCTC +
Preference number: 5 (lower is better)
Translates to: IQRTVMDLAKTRMNGCRSMRRSL*CSGILL
Trigger: GAGCAGAATTCCGGAACACAAGAGTGACCGCCTCAT...GCTCCTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp AATATGGCACATAATCCATTGGGGACATCAGTAGATTCAGAGGACAGTCATGGATGTAGGAATTCTGACTaGAGGTTCCCTCGGTCCAGG +
Preference number: 5 (lower is better)
Translates to: NMAHNPLGTSVDSEDSHGCRNSD*RFPRSR
Trigger: CCTGGACCGAGGGAACCTCAAGTCAGAATTCCTACA...TCCATGACTGTCCTCTGAATCTACTGATGTCCCCAATGGATTATGTGCCATATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp AATATGGCACATAATCCATTGGGGACATCAGTAGATTCAGAGGACAGTCATGGATGCGTAGGTTTTGTGTaGTTCTTGTCTCCACGGCTC +
Preference number: 5 (lower is better)
Translates to: NMAHNPLGTSVDSEDSHGCVGFV*FLSPRL
Trigger: GAGCCGTGGAGACAAGAACAACACAAAACCTACGCA...TCCATGACTGTCCTCTGAATCTACTGATGTCCCCAATGGATTATGTGCCATATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp ACATCAGTAGATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATCGTCGCCTTGCAGTaGGAGAGCTTGGCGAACATA +
Preference number: 5 (lower is better)
Translates to: TSVDSEDSHGSGKNKNEWIVALQ*ESLANI
Trigger: TATGTTCGCCAAGCTCTCCAACTGCAAGGCGACGAT...CCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAATCTACTGATGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp GTAGATTCAGAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGGACATTATGGGACATaGGGAAGAGGTTGGCAGCTT +
Preference number: 5 (lower is better)
Translates to: VDSEDSHGSGKNKNEWMQGHYGT*GRGWQL
Trigger: AAGCTGCCAACCTCTTCCCAATGTCCCATAATGTCC...CTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTCTGAATCTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS-3UTR CAA 90 bp GAGGACAGTCATGGATCTGGCAAAAACAAGAATGAATGGATGCAGGAGCAGAGATTGGCCATGACCAGATaGGATTCTTGTAGGAATTCT +
Preference number: 5 (lower is better)
Translates to: EDSHGSGKNKNEWMQEQRLAMTR*DSCRNS
Trigger: AGAATTCCTACAAGAATCCAATCTGGTCATGGCCAA...TCTCTGCTCCTGCATCCATTCATTCTTGTTTTTGCCAGATCCATGACTGTCCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS-3UTR CAA 90 bp AATATGGCACATAATCCATTGGGGACATCAGTAGATTCAGAGGACAGTCATGGAAACAAAGTCCTTTGGTaGCATAGGCTTCAGCAATCA +
Preference number: 5 (lower is better)
Translates to: NMAHNPLGTSVDSEDSHGNKVLW*HRLQQS
Trigger: TGATTGCTGAAGCCTATGCAACCAAAGGACTTTGTT...TCCATGACTGTCCTCTGAATCTACTGATGTCCCCAATGGATTATGTGCCATATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS CCA 72 bp GCTTGGAGGACCTCGCCCAGCCCGTTCCAGACCTCGTaGGCTGTCGAATTCACCTGCACTGCATCCCGGAGA +
Preference number: 6 (lower is better)
Translates to: AWRTSPSPFQTS*AVEFTCTASRR
Trigger: TCTCCGGGATGCAGTGCAGGTGAATTCGACAGCCCACGAGGTCTGGAACGGGCTGGGCGAGGTCCTCCAAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS GCA 72 bp CAGTTCCAAGGCTGTCAGGAAGCACTCGGTGGCTGCTaGGTCGTTACCCTGAGCTTGGAGGACCTCGCCCAG +
Preference number: 6 (lower is better)
Translates to: QFQGCQEALGGC*VVTLSLEDLAQ
Trigger: CTGGGCGAGGTCCTCCAAGCTCAGGGTAACGACGCAGCAGCCACCGAGTGCTTCCTGACAGCCTTGGAACTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS GCA 72 bp CTCCAGTTCCAAGGCTGTCAGGAAGCACTCGGTGGCTaGTGCGTCGTTACCCTGAGCTTGGAGGACCTCGCC +
Preference number: 6 (lower is better)
Translates to: LQFQGCQEALGG*CVVTLSLEDLA
Trigger: GGCGAGGTCCTCCAAGCTCAGGGTAACGACGCAGCAGCCACCGAGTGCTTCCTGACAGCCTTGGAACTGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS CCA 72 bp GGGAACCCACACAGAGCTTGGCTGCCAAGAGCGGGATaGTGGCGTCGTCCGGCTTTAGCCGGATGCATTCCT +
Preference number: 6 (lower is better)
Translates to: GNPHRAWLPRAG*WRRPALAGCIP
Trigger: AGGAATGCATCCGGCTAAAGCCGGACGACGCCACCATCCCGCTCTTGGCAGCCAAGCTCTGTGTGGGTTCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS CAA 90 bp AGTTCAGCCATATCATCGTTGGCGATGAGCTTGGCCGACAGCTGCTaGACGAGCTCGGGGATCCGCTCCCATTGGCACTCGGAGCGGCAG +
Preference number: 6 (lower is better)
Translates to: SSAISSLAMSLADSC*TSSGIRSHWHSERQ
Trigger: CTGCCGCTCCGAGTGCCAATGGGAGCGGATCCCCGAGCTCGTCAAGCAGCTGTCGGCCAAGCTCATCGCCAACGATGATATGGCTGAACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS GCA 72 bp GCCATATCATCGTTGGCGATGAGCTTGGCCGACAGCTaGTTGACGAGCTCGGGGATCCGCTCCCATTGGCAC +
Preference number: 6 (lower is better)
Translates to: AISSLAMSLADS*LTSSGIRSHWH
Trigger: GTGCCAATGGGAGCGGATCCCCGAGCTCGTCAAGCAGCTGTCGGCCAAGCTCATCGCCAACGATGATATGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS CCA 72 bp TGGCCTCCAGTTCCAAGGCTGTCAGGAAGCACTCGGTaGCTGCTGCGTCGTTACCCTGAGCTTGGAGGACCT +
Preference number: 6 (lower is better)
Translates to: WPPVPRLSGSTR*LLRRYPELGGP
Trigger: AGGTCCTCCAAGCTCAGGGTAACGACGCAGCAGCCACCGAGTGCTTCCTGACAGCCTTGGAACTGGAGGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS TCA 72 bp CGTGTTTGCTCCTTTCCGGAGAGGGTCATCCAGAGGTaGCTGGTAGGGAGGCTCCTCCAGAGGGCTCCAGTA +
Preference number: 6 (lower is better)
Translates to: RVCSFPERVIQR*LVGRLLQRAPV
Trigger: TACTGGAGCCCTCTGGAGGAGCCTCCCTACCAGTCACCTCTGGATGACCCTCTCCGGAAAGGAGCAAACACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS CCA 72 bp AACCCACACAGAGCTTGGCTGCCAAGAGCGGGATGGTaGCGTCGTCCGGCTTTAGCCGGATGCATTCCTTCA +
Preference number: 6 (lower is better)
Translates to: NPHRAWLPRAGW*RRPALAGCIPS
Trigger: TGAAGGAATGCATCCGGCTAAAGCCGGACGACGCCACCATCCCGCTCTTGGCAGCCAAGCTCTGTGTGGGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS CAA 72 bp ATATCATCGTTGGCGATGAGCTTGGCCGACAGCTGCTaGACGAGCTCGGGGATCCGCTCCCATTGGCACTCG +
Preference number: 6 (lower is better)
Translates to: ISSLAMSLADSC*TSSGIRSHWHS
Trigger: CGAGTGCCAATGGGAGCGGATCCCCGAGCTCGTCAAGCAGCTGTCGGCCAAGCTCATCGCCAACGATGATAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS CAA 72 bp CACGGGCTCTGCGAGGGAGTGTGTAGGCCTTCGTGTTaGCTCCTTTCCGGAGAGGGTCATCCAGAGGTGACT +
Preference number: 6 (lower is better)
Translates to: HGLCEGVCRPSC*LLSGEGHPEVT
Trigger: AGTCACCTCTGGATGACCCTCTCCGGAAAGGAGCAAACACGAAGGCCTACACACTCCCTCGCAGAGCCCGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS CAA 90 bp GACTCCCCAAGGAGAAGTTCAGCCATATCATCGTTGGCGATGAGCTaGGCCGACAGCTGCTTGACGAGCTCGGGGATCCGCTCCCATTGG +
Preference number: 6 (lower is better)
Translates to: DSPRRSSAISSLAMS*ADSCLTSSGIRSHW
Trigger: CCAATGGGAGCGGATCCCCGAGCTCGTCAAGCAGCTGTCGGCCAAGCTCATCGCCAACGATGATATGGCTGAACTTCTCCTTGGGGAGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS CAA 90 bp CTGAGTAGACACGGGCTCTGCGAGGGAGTGTGTAGGCCTTCGTGTTaGCTCCTTTCCGGAGAGGGTCATCCAGAGGTGACTGGTAGGGAG +
Preference number: 6 (lower is better)
Translates to: LSRHGLCEGVCRPSC*LLSGEGHPEVTGRE
Trigger: CTCCCTACCAGTCACCTCTGGATGACCCTCTCCGGAAAGGAGCAAACACGAAGGCCTACACACTCCCTCGCAGAGCCCGTGTCTACTCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS GCA 72 bp CAGGGATGCAGTGGACCCTGCTTGGGAGCACTGCTTTaGAGAGATGAGGCCACTTCTGACAGTGCTTGCTCC +
Preference number: 6 (lower is better)
Translates to: QGCSGPCLGALL*RDEATSDSACS
Trigger: GGAGCAAGCACTGTCAGAAGTGGCCTCATCTCTGCAAAGCAGTGCTCCCAAGCAGGGTCCACTGCATCCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS CAA 72 bp AGGAGAAGTTCAGCCATATCATCGTTGGCGATGAGCTaGGCCGACAGCTGCTTGACGAGCTCGGGGATCCGC +
Preference number: 6 (lower is better)
Translates to: RRSSAISSLAMS*ADSCLTSSGIR
Trigger: GCGGATCCCCGAGCTCGTCAAGCAGCTGTCGGCCAAGCTCATCGCCAACGATGATATGGCTGAACTTCTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS CAA 72 bp TGTGCCAGCGTCATCCAGGGATGCAGTGGACCCTGCTaGGGAGCACTGCTTTGCAGAGATGAGGCCACTTCT +
Preference number: 6 (lower is better)
Translates to: CASVIQGCSGPC*GALLCRDEATS
Trigger: AGAAGTGGCCTCATCTCTGCAAAGCAGTGCTCCCAAGCAGGGTCCACTGCATCCCTGGATGACGCTGGCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS GCA 72 bp AGAGCCAGGAGGTGCAGGGAGTTCGCATCGTCGCCTTaGAGTTGGAGAGCTTGGCGAACATATCCTAGAGCT +
Preference number: 6 (lower is better)
Translates to: RARRCREFASSP*SWRAWRTYPRA
Trigger: AGCTCTAGGATATGTTCGCCAAGCTCTCCAACTGCAAGGCGACGATGCGAACTCCCTGCACCTCCTGGCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS GCA 72 bp AGCCCGTTCCAGACCTCGTGGGCTGTCGAATTCACCTaGACTGCATCCCGGAGAATCTTCTCAGCTAGACTG +
Preference number: 6 (lower is better)
Translates to: SPFQTSWAVEFT*TASRRIFSARL
Trigger: CAGTCTAGCTGAGAAGATTCTCCGGGATGCAGTGCAGGTGAATTCGACAGCCCACGAGGTCTGGAACGGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS CAA 72 bp GAGATGAGGCCACTTCTGACAGTGCTTGCTCCACTCTaGAGGCTGCTACTGATGTGGCATGGACGGAGCCTG +
Preference number: 6 (lower is better)
Translates to: EMRPLLTVLAPL*RLLLMWHGRSL
Trigger: CAGGCTCCGTCCATGCCACATCAGTAGCAGCCTCAAGAGTGGAGCAAGCACTGTCAGAAGTGGCCTCATCTC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062957.8
CDS TCA 72 bp GAAGGTTCATGGCGGGGACCTGGGTCACTGAATGAATaGGCAGCAGGGGGCCACACAAAGATGTCAGGTTTG +
Preference number: 6 (lower is better)
Translates to: EGSWRGPGSLNE*AAGGHTKMSGL
Trigger: CAAACCTGACATCTTTGTGTGGCCCCCTGCTGCTCATTCATTCAGTGACCCAGGTCCCCGCCATGAACCTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000223110.2
CDS GCA 72 bp TCATCCAGGGATGCAGTGGACCCTGCTTGGGAGCACTaGTTTGCAGAGATGAGGCCACTTCTGACAGTGCTT +
Preference number: 6 (lower is better)
Translates to: SSRDAVDPAWEH*FAEMRPLLTVL
Trigger: AAGCACTGTCAGAAGTGGCCTCATCTCTGCAAAGCAGTGCTCCCAAGCAGGGTCCACTGCATCCCTGGATGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS CCA 72 bp AGGAGGTGCAGGGAGTTCGCATCGTCGCCTTGCAGTTaGAGAGCTTGGCGAACATATCCTAGAGCTTCTGGT +
Preference number: 6 (lower is better)
Translates to: RRCREFASSPCS*RAWRTYPRASG
Trigger: ACCAGAAGCTCTAGGATATGTTCGCCAAGCTCTCCAACTGCAAGGCGACGATGCGAACTCCCTGCACCTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS CAA 72 bp CAACCTGGCCCCGCATGTAGAGGACATTATGGGACATaGGGAAGAGGTTGGCAGCTTCTTGGGTACAGGCTG +
Preference number: 6 (lower is better)
Translates to: QPGPACRGHYGT*GRGWQLLGYRL
Trigger: CAGCCTGTACCCAAGAAGCTGCCAACCTCTTCCCAATGTCCCATAATGTCCTCTACATGCGGGGCCAGGTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS CAA 90 bp TGCTTTGCAGAGATGAGGCCACTTCTGACAGTGCTTGCTCCACTCTaGAGGCTGCTACTGATGTGGCATGGACGGAGCCTGTCTCAGGAT +
Preference number: 6 (lower is better)
Translates to: CFAEMRPLLTVLAPL*RLLLMWHGRSLSQD
Trigger: ATCCTGAGACAGGCTCCGTCCATGCCACATCAGTAGCAGCCTCAAGAGTGGAGCAAGCACTGTCAGAAGTGGCCTCATCTCTGCAAAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062957.8
CDS TCA 72 bp TGCAGAATGAAGGTTCATGGCGGGGACCTGGGTCACTaGATGAATGAGCAGCAGGGGGCCACACAAAGATGT +
Preference number: 6 (lower is better)
Translates to: CRMKVHGGDLGH*MNEQQGATQRC
Trigger: ACATCTTTGTGTGGCCCCCTGCTGCTCATTCATTCAGTGACCCAGGTCCCCGCCATGAACCTTCATTCTGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000223110.2
CDS CCA 72 bp AACCTGGCCCCGCATGTAGAGGACATTATGGGACATTaGGAAGAGGTTGGCAGCTTCTTGGGTACAGGCTGT +
Preference number: 6 (lower is better)
Translates to: NLAPHVEDIMGH*EEVGSFLGTGC
Trigger: ACAGCCTGTACCCAAGAAGCTGCCAACCTCTTCCCAATGTCCCATAATGTCCTCTACATGCGGGGCCAGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS CCA 72 bp CTTGGCGAACATATCCTAGAGCTTCTGGTATCTGTCTaGAGATGGCGAGCTGCAGAGCCAGGTAGAAAGCTG +
Preference number: 6 (lower is better)
Translates to: LGEHILELLVSV*RWRAAEPGRKL
Trigger: CAGCTTTCTACCTGGCTCTGCAGCTCGCCATCTCCAGACAGATACCAGAAGCTCTAGGATATGTTCGCCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS CCA 72 bp GGCATGGACGGAGCCTGTCTCAGGATCGCTGAAGTCTaGCAAAGTGATTGTATTAAGCTGTCGTCTGTCAGC +
Preference number: 6 (lower is better)
Translates to: GMDGACLRIAEV*QSDCIKLSSVS
Trigger: GCTGACAGACGACAGCTTAATACAATCACTTTGCCAGACTTCAGCGATCCTGAGACAGGCTCCGTCCATGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062957.8
CDS CCA 72 bp ACAGCATCTCATACTGGCCTCGTCTTCCAAGGGCAATaGTCAGTAGATCATAGACCACAGACGCGCTTTGCA +
Preference number: 6 (lower is better)
Translates to: TASHTGLVFQGQ*SVDHRPQTRFA
Trigger: TGCAAAGCGCGTCTGTGGTCTATGATCTACTGACCATTGCCCTTGGAAGACGAGGCCAGTATGAGATGCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS CCA 72 bp ACATTATGGGACATTGGGAAGAGGTTGGCAGCTTCTTaGGTACAGGCTGTAGCTTCCGCAGGCTTTCCAATG +
Preference number: 6 (lower is better)
Translates to: TLWDIGKRLAAS*VQAVASAGFPM
Trigger: CATTGGAAAGCCTGCGGAAGCTACAGCCTGTACCCAAGAAGCTGCCAACCTCTTCCCAATGTCCCATAATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS CAA 72 bp GACATTATGGGACATTGGGAAGAGGTTGGCAGCTTCTaGGGTACAGGCTGTAGCTTCCGCAGGCTTTCCAAT +
Preference number: 6 (lower is better)
Translates to: DIMGHWEEVGSF*GTGCSFRRLSN
Trigger: ATTGGAAAGCCTGCGGAAGCTACAGCCTGTACCCAAGAAGCTGCCAACCTCTTCCCAATGTCCCATAATGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS CAA 90 bp CATGTAGAGGACATTATGGGACATTGGGAAGAGGTTGGCAGCTTCTaGGGTACAGGCTGTAGCTTCCGCAGGCTTTCCAATGCCAATGTA +
Preference number: 6 (lower is better)
Translates to: HVEDIMGHWEEVGSF*GTGCSFRRLSNANV
Trigger: TACATTGGCATTGGAAAGCCTGCGGAAGCTACAGCCTGTACCCAAGAAGCTGCCAACCTCTTCCCAATGTCCCATAATGTCCTCTACATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
ENSMUST00000223110.2
CDS CAA 90 bp AATGAAGAGGAGAAGACACAAACAGGTGGAGAGGAGACTCCGTTCTaGACAGAGAAGAGGAGGAGGAGGAGTCTGACACTGTCTCAGGAT +
Preference number: 6 (lower is better)
Translates to: NEEEKTQTGGEETPF*TEKRRRRSLTLSQD
Trigger: ATCCTGAGACAGTGTCAGACTCCTCCTCCTCCTCTTCTCTGTCAAGAACGGAGTCTCCTCTCCACCTGTTTGTGTCTTCTCCTCTTCATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223110.2
CDS GCA 72 bp GTAACAAGATTTCTGCCAACTGCCTGGCTATCGTCATaGGTAGGTTTTGTGTTGTTCTTGTCTCCACGGCTC +
Preference number: 6 (lower is better)
Translates to: VTRFLPTAWLSS*VGFVLFLSPRL
Trigger: GAGCCGTGGAGACAAGAACAACACAAAACCTACGCATGACGATAGCCAGGCAGTTGGCAGAAATCTTGTTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS GCA 72 bp TGCTCACACATGCCCCGTAACAAGATTTCTGCCAACTaGCTGGCTATCGTCATGCGTAGGTTTTGTGTTGTT +
Preference number: 6 (lower is better)
Translates to: CSHMPRNKISAN*LAIVMRRFCVV
Trigger: AACAACACAAAACCTACGCATGACGATAGCCAGGCAGTTGGCAGAAATCTTGTTACGGGGCATGTGTGAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS CCA 72 bp ATGGCTCTTTCTAAGCACTCTGACAGCATCTCATACTaGCCTCGTCTTCCAAGGGCAATGGTCAGTAGATCA +
Preference number: 6 (lower is better)
Translates to: MALSKHSDSISY*PRLPRAMVSRS
Trigger: TGATCTACTGACCATTGCCCTTGGAAGACGAGGCCAGTATGAGATGCTGTCAGAGTGCTTAGAAAGAGCCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2
CDS CCA 72 bp TTCTGGAGAGTTGCCTGTCTCAGGATCGCTGAAGTCTaGCAAAGTGATTGTATTAAGCTGTCGTCTGTCAGC +
Preference number: 6 (lower is better)
Translates to: FWRVACLRIAEV*QSDCIKLSSVS
Trigger: GCTGACAGACGACAGCTTAATACAATCACTTTGCCAGACTTCAGCGATCCTGAGACAGGCAACTCTCCAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223020.2
CDS CCA 72 bp AGGACGAAACAGGCAGTTTCTCTAAACAAAGTCCTTTaGTTGCATAGGCTTCAGCAATCATTCGCAACCTGT +
Preference number: 6 (lower is better)
Translates to: RTKQAVSLNKVL*LHRLQQSFATC
Trigger: ACAGGTTGCGAATGATTGCTGAAGCCTATGCAACCAAAGGACTTTGTTTAGAGAAACTGCCTGTTTCGTCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062957.8
ENSMUST00000223020.2