Pregenerated sensors for TTC4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025413Ensembl transcript IDs: ENSMUST00000026480.13, ENSMUST00000106772.10, ENSMUST00000135676.2
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACTGGCCAGGGCAGGGCTGTGAATCTGAGGAGAGTGCGGCCCAGCTaGAGCCCAGCACTCAGCCAGACAGGCTTAGGTTCAGGGGGTCCT | + |
|
Preference number: 1 (lower is better) Translates to: TGQGRAVNLRRVRPS*SPALSQTGLGSGGP Trigger: AGGACCCCCTGAACCTAAGCCTGTCTGGCTGAGTGCTGGGCTCCAGCTGGGCCGCACTCTCCTCAGATTCACAGCCCTGCCCTGGCCAGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| 3UTR GCA 90 bp | CTGGAGCCCAGCACTCAGCCAGACAGGCTTAGGTTCAGGGGGTCCTaGAGCTTCTTCCCCAACAAGAGGCTGGGAACCACTGTCCCTGAG | + |
|
Preference number: 1 (lower is better) Translates to: LEPSTQPDRLRFRGS*SFFPNKRLGTTVPE Trigger: CTCAGGGACAGTGGTTCCCAGCCTCTTGTTGGGGAAGAAGCTGCAGGACCCCCTGAACCTAAGCCTGTCTGGCTGAGTGCTGGGCTCCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| 3UTR GCA 90 bp | TCTTCCCCAACAAGAGGCTGGGAACCACTGTCCCTGAGGATAGAGTaGTACACTCTAGGCCAGATGATTCCCGTGTACAAAGTCCAGCAG | + |
|
Preference number: 1 (lower is better) Translates to: SSPTRGWEPLSLRIE*YTLGQMIPVYKVQQ Trigger: CTGCTGGACTTTGTACACGGGAATCATCTGGCCTAGAGTGTAGCACTCTATCCTCAGGGACAGTGGTTCCCAGCCTCTTGTTGGGGAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| 3UTR GCA 90 bp | CTGTATGTGCCCGATGCCACAAAGGTTAAGACTGTCACTGCATCCTaGGACAGTCTCTGGGCTAGGGAGTTACCAAGGCCAGCTATTCTG | + |
|
Preference number: 1 (lower is better) Translates to: LYVPDATKVKTVTAS*DSLWARELPRPAIL Trigger: CAGAATAGCTGGCCTTGGTAACTCCCTAGCCCAGAGACTGTCGCAGGATGCAGTGACAGTCTTAACCTTTGTGGCATCGGGCACATACAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| 3UTR TCA 90 bp | GCTGTGGGCTTTGCTCAGACACCAGGACTACTCCTATTTCAGAAATaGGACCTCACAATAAAGGGAAAACAACACAAGCCTACTTGCAAA | + |
|
Preference number: 1 (lower is better) Translates to: AVGFAQTPGLLLFQK*DLTIKGKQHKPTCK Trigger: TTTGCAAGTAGGCTTGTGTTGTTTTCCCTTTATTGTGAGGTCTCATTTCTGAAATAGGAGTAGTCCTGGTGTCTGAGCAAAGCCCACAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| 3UTR-3UTR TCA 90 bp | AGGGCTGTGAATCTGAGGAGAGTGCGGCCCAGCTGGAGCCCAGCACTCAGCCAGTCCAGCAGAGGAAGTTaGGGGAAGAGACCCCAGGGT | + |
|
Preference number: 2 (lower is better) Translates to: RAVNLRRVRPSWSPALSQSSRGS*GKRPQG Trigger: ACCCTGGGGTCTCTTCCCTCAACTTCCTCTGCTGGA...CTGGCTGAGTGCTGGGCTCCAGCTGGGCCGCACTCTCCTCAGATTCACAGCCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| 3UTR-3UTR GCA 90 bp | CAGGGCAGGGCTGTGAATCTGAGGAGAGTGCGGCCCAGCTGGAGCCCAGCACTCAGGTTCAGGGGGTCCTaGAGCTTCTTCCCCAACAAG | + |
|
Preference number: 2 (lower is better) Translates to: QGRAVNLRRVRPSWSPALRFRGS*SFFPNK Trigger: CTTGTTGGGGAAGAAGCTGCAGGACCCCCTGAACCT...GAGTGCTGGGCTCCAGCTGGGCCGCACTCTCCTCAGATTCACAGCCCTGCCCTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| 3UTR-3UTR GCA 90 bp | CTGCATCCTGCGACAGTCTCTGGGCTAGGGAGTTACCAAGGCCAGCTATTCTGGTCCCTGAGGATAGAGTaGTACACTCTAGGCCAGATG | + |
|
Preference number: 2 (lower is better) Translates to: LHPATVSGLGSYQGQLFWSLRIE*YTLGQM Trigger: CATCTGGCCTAGAGTGTAGCACTCTATCCTCAGGGA...CCAGAATAGCTGGCCTTGGTAACTCCCTAGCCCAGAGACTGTCGCAGGATGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| 3UTR CAA 90 bp | CTCCTCAAGCTTCTGTCAGATGTGGCACAAGCCCTTGCATGGGCATaGAGAAGTAGAGAATCCAGTAGGGCTCTGAGTAGTCCCAGGATC | + |
|
Preference number: 2 (lower is better) Translates to: LLKLLSDVAQALAWA*RSRESSRALSSPRI Trigger: GATCCTGGGACTACTCAGAGCCCTACTGGATTCTCTACTTCTCAATGCCCATGCAAGGGCTTGTGCCACATCTGACAGAAGCTTGAGGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| 3UTR-3UTR CCA 90 bp | ATATTAGCCCATCTGAAGGCCACCAGCTGGTTTCAGTTTAATAATGTATTAGTCTTAGGCCAGCTGCTGTaGGCTTTGCTCAGACACCAG | + |
|
Preference number: 2 (lower is better) Translates to: ILAHLKATSWFQFNNVLVLGQLL*ALLRHQ Trigger: CTGGTGTCTGAGCAAAGCCCACAGCAGCTGGCCTAA...GACTAATACATTATTAAACTGAAACCAGCTGGTGGCCTTCAGATGGGCTAATAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| 3UTR-3UTR CCA 90 bp | ACTACTCCTATTTCAGAAATGAGACCTCACAATAAAGGGAAAACAACACAAGCCACTCCAAAGATGTACTaGCCAGGGCAGGGCTGTGAA | + |
|
Preference number: 2 (lower is better) Translates to: TTPISEMRPHNKGKTTQATPKMY*PGQGCE Trigger: TTCACAGCCCTGCCCTGGCCAGTACATCTTTGGAGT...GGCTTGTGTTGTTTTCCCTTTATTGTGAGGTCTCATTTCTGAAATAGGAGTAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| 3UTR GCA 72 bp | CCCGATGCCACAAAGGTTAAGACTGTCACTGCATCCTaGGACAGTCTCTGGGCTAGGGAGTTACCAAGGCCA | + |
|
Preference number: 3 (lower is better) Translates to: PDATKVKTVTAS*DSLWARELPRP Trigger: TGGCCTTGGTAACTCCCTAGCCCAGAGACTGTCGCAGGATGCAGTGACAGTCTTAACCTTTGTGGCATCGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| 3UTR CCA 72 bp | AGAACAGGATGTGGCTTCATGGCTGCAGTCACTTCATaGCATCCACAGCATCTTAGCTTTCCTCCAGGCTGG | + |
|
Preference number: 3 (lower is better) Translates to: RTGCGFMAAVTS*HPQHLSFPPGW Trigger: CCAGCCTGGAGGAAAGCTAAGATGCTGTGGATGCCATGAAGTGACTGCAGCCATGAAGCCACATCCTGTTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| 3UTR GCA 72 bp | ACAAGAGGCTGGGAACCACTGTCCCTGAGGATAGAGTaGTACACTCTAGGCCAGATGATTCCCGTGTACAAA | + |
|
Preference number: 3 (lower is better) Translates to: TRGWEPLSLRIE*YTLGQMIPVYK Trigger: TTTGTACACGGGAATCATCTGGCCTAGAGTGTAGCACTCTATCCTCAGGGACAGTGGTTCCCAGCCTCTTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| 3UTR CCA 72 bp | CTCAAGCTTCTGTCAGATGTGGCACAAGCCCTTGCATaGGCATTGAGAAGTAGAGAATCCAGTAGGGCTCTG | + |
|
Preference number: 3 (lower is better) Translates to: LKLLSDVAQALA*ALRSRESSRAL Trigger: CAGAGCCCTACTGGATTCTCTACTTCTCAATGCCCATGCAAGGGCTTGTGCCACATCTGACAGAAGCTTGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| 3UTR GCA 72 bp | GAGTATGTGCAGGGCTGGTTTATTGCCTTGGAGTTGTaGCTTCTGTATGTGCCCGATGCCACAAAGGTTAAG | + |
|
Preference number: 3 (lower is better) Translates to: EYVQGWFIALEL*LLYVPDATKVK Trigger: CTTAACCTTTGTGGCATCGGGCACATACAGAAGGCACAACTCCAAGGCAATAAACCAGCCCTGCACATACTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| 3UTR-3UTR CAA 90 bp | GTATTAGTCAGTTTTCCTATATTGACGAACAATCCCCCAAATCTCAAGTGTTTAGGCTGGTTTATTGCCTaGGAGTTGTGCCTTCTGTAT | + |
|
Preference number: 3 (lower is better) Translates to: VLVSFPILTNNPPNLKCLGWFIA*ELCLLY Trigger: ATACAGAAGGCACAACTCCAAGGCAATAAACCAGCC...TAAACACTTGAGATTTGGGGGATTGTTCGTCAATATAGGAAAACTGACTAATAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| CDS-3UTR GCA 90 bp | ACAGGCTTAGGTTCAGGGGGTCCTGCAGCTTCTTCCCCAACAAGAGGCTGGGAAACGCAGCACCTGGGGTaGTGCAGCACCTGCAACAGG | + |
|
Preference number: 4 (lower is better) Translates to: TGLGSGGPAASSPTRGWETQHLG*CSTCNR Trigger: CCTGTTGCAGGTGCTGCAGCACCCCAGGTGCTGCGT...TTCCCAGCCTCTTGTTGGGGAAGAAGCTGCAGGACCCCCTGAACCTAAGCCTGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| CDS-3UTR CCA 90 bp | GTGCAGGGCTGGTTTATTGCCTTGGAGTTGTGCCTTCTGTATGTGCCCGATGCCCCTTCACGCAGCACCTaGGGTGCTGCAGCACCTGCA | + |
|
Preference number: 4 (lower is better) Translates to: VQGWFIALELCLLYVPDAPSRST*GAAAPA Trigger: TGCAGGTGCTGCAGCACCCCAGGTGCTGCGTGAAGG...GGCATCGGGCACATACAGAAGGCACAACTCCAAGGCAATAAACCAGCCCTGCAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| CDS-3UTR GCA 90 bp | CCCAACAAGAGGCTGGGAACCACTGTCCCTGAGGATAGAGTGCTACACTCTAGGGAGATGAAGTCTGATTaGGCGTACTCCGGGTACAGG | + |
|
Preference number: 4 (lower is better) Translates to: PNKRLGTTVPEDRVLHSREMKSD*AYSGYR Trigger: CCTGTACCCGGAGTACGCGCAATCAGACTTCATCTC...CCTAGAGTGTAGCACTCTATCCTCAGGGACAGTGGTTCCCAGCCTCTTGTTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| CDS-3UTR TCA 90 bp | CCCAACAAGAGGCTGGGAACCACTGTCCCTGAGGATAGAGTGCTACACTCTAGGTTCATCCTCACCGGCTaGTTCAGAGACAAGCCTGAT | + |
|
Preference number: 4 (lower is better) Translates to: PNKRLGTTVPEDRVLHSRFILTG*FRDKPD Trigger: ATCAGGCTTGTCTCTGAATCAGCCGGTGAGGATGAA...CCTAGAGTGTAGCACTCTATCCTCAGGGACAGTGGTTCCCAGCCTCTTGTTGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| CDS-3UTR TCA 90 bp | TGCTCAGACACCAGGACTACTCCTATTTCAGAAATGAGACCTCACAATAAAGGGAATTCCTCCTCCCACTaGTCCTCGCGGAAGCCGCCG | + |
|
Preference number: 4 (lower is better) Translates to: CSDTRTTPISEMRPHNKGNSSSH*SSRKPP Trigger: CGGCGGCTTCCGCGAGGATCAGTGGGAGGAGGAATT...CCCTTTATTGTGAGGTCTCATTTCTGAAATAGGAGTAGTCCTGGTGTCTGAGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| CDS-3UTR CCA 90 bp | AGATGGACTCCAAAGATGTACTGGCCAGGGCAGGGCTGTGAATCTGAGGAGAGTTCTCAGCTGGACCATTaGAGGCTGAATCTTCATCCT | + |
|
Preference number: 4 (lower is better) Translates to: RWTPKMYWPGQGCESEESSQLDH*RLNLHP Trigger: AGGATGAAGATTCAGCCTCCAATGGTCCAGCTGAGA...ACTCTCCTCAGATTCACAGCCCTGCCCTGGCCAGTACATCTTTGGAGTCCATCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| CDS-3UTR CCA 90 bp | ACAGGCTTAGGTTCAGGGGGTCCTGCAGCTTCTTCCCCAACAAGAGGCTGGGAAAACATCGCCATTAGATaGTCAATAAACCTGGTGTCC | + |
|
Preference number: 4 (lower is better) Translates to: TGLGSGGPAASSPTRGWENIAIR*SINLVS Trigger: GGACACCAGGTTTATTGACCATCTAATGGCGATGTT...TTCCCAGCCTCTTGTTGGGGAAGAAGCTGCAGGACCCCCTGAACCTAAGCCTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| CDS-3UTR GCA 90 bp | TTAGCCCATCTGAAGGCCACCAGCTGGTTTCAGTTTAATAATGTATTAGTCAGTCAGCACCTGGGGTGCTaGAGCACCTGCAACAGGGTG | + |
|
Preference number: 4 (lower is better) Translates to: LAHLKATSWFQFNNVLVSQHLGC*STCNRV Trigger: CACCCTGTTGCAGGTGCTGCAGCACCCCAGGTGCTG...ACTGACTAATACATTATTAAACTGAAACCAGCTGGTGGCCTTCAGATGGGCTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| CDS-3UTR CCA 90 bp | GGATGTGGCTTCATGGCTGCAGTCACTTCATGGCATCCACAGCATCTTAGCTTTTCCAGATTCTCTGGGTaGTACTTGTGCTCTGAGTCC | + |
|
Preference number: 4 (lower is better) Translates to: GCGFMAAVTSWHPQHLSFSRFSG*YLCSES Trigger: GGACTCAGAGCACAAGTACCACCCAGAGAATCTGGA...AAAGCTAAGATGCTGTGGATGCCATGAAGTGACTGCAGCCATGAAGCCACATCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| 3UTR CAA 72 bp | CTTCTGTCAGATGTGGCACAAGCCCTTGCATGGGCATaGAGAAGTAGAGAATCCAGTAGGGCTCTGAGTAGT | + |
|
Preference number: 4 (lower is better) Translates to: LLSDVAQALAWA*RSRESSRALSS Trigger: ACTACTCAGAGCCCTACTGGATTCTCTACTTCTCAATGCCCATGCAAGGGCTTGTGCCACATCTGACAGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| 3UTR CAA 72 bp | GAAAACAACACAAGCCTACTTGCAAACCACTGCCCATaGACTCCTCAAGCTTCTGTCAGATGTGGCACAAGC | + |
|
Preference number: 4 (lower is better) Translates to: ENNTSLLANHCP*TPQASVRCGTS Trigger: GCTTGTGCCACATCTGACAGAAGCTTGAGGAGTCAATGGGCAGTGGTTTGCAAGTAGGCTTGTGTTGTTTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| CDS-3UTR GCA 90 bp | GAACAGGATGTGGCTTCATGGCTGCAGTCACTTCATGGCATCCACAGCATCTTAATTCAAATCAGGGTCTaGACACTTCTTCTTCAACCC | + |
|
Preference number: 4 (lower is better) Translates to: EQDVASWLQSLHGIHSILIQIRV*TLLLQP Trigger: GGGTTGAAGAAGAAGTGTGCAGACCCTGATTTGAAT...TAAGATGCTGTGGATGCCATGAAGTGACTGCAGCCATGAAGCCACATCCTGTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| CDS-3UTR TCA 90 bp | AGTTTATACAGTCAACAGAACAGGATGTGGCTTCATGGCTGCAGTCACTTCATGCAACCCTTCACTGTATaGAAGCACAGCTTTCTTATA | + |
|
Preference number: 4 (lower is better) Translates to: SLYSQQNRMWLHGCSHFMQPFTV*KHSFLI Trigger: TATAAGAAAGCTGTGCTTTCATACAGTGAAGGGTTG...CATGAAGTGACTGCAGCCATGAAGCCACATCCTGTTCTGTTGACTGTATAAACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| CDS-3UTR TCA 90 bp | GTATTAGTCAGTTTTCCTATATTGACGAACAATCCCCCAAATCTCAAGTGTTTAAGCAGAGCCTCATTCTaGTGCTGTTCCTTCTTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: VLVSFPILTNNPPNLKCLSRASF*CCSFFS Trigger: AGAAAAGAAGGAACAGCATCAGAATGAGGCTCTGCT...TAAACACTTGAGATTTGGGGGATTGTTCGTCAATATAGGAAAACTGACTAATAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| CDS-3UTR CAA 90 bp | CAGGGCTGTGAATCTGAGGAGAGTGCGGCCCAGCTGGAGCCCAGCACTCAGCCATCCATCCTCTTTAGCTaGTCTGCTTTTGCCCTTATT | + |
|
Preference number: 5 (lower is better) Translates to: QGCESEESAAQLEPSTQPSILFS*SAFALI Trigger: AATAAGGGCAAAAGCAGACAAGCTAAAGAGGATGGA...TGGCTGAGTGCTGGGCTCCAGCTGGGCCGCACTCTCCTCAGATTCACAGCCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| CDS-3UTR CAA 90 bp | ACAGGCTTAGGTTCAGGGGGTCCTGCAGCTTCTTCCCCAACAAGAGGCTGGGAAATCTCAGCTGGACCATaGGAGGCTGAATCTTCATCC | + |
|
Preference number: 5 (lower is better) Translates to: TGLGSGGPAASSPTRGWEISAGP*EAESSS Trigger: GGATGAAGATTCAGCCTCCAATGGTCCAGCTGAGAT...TTCCCAGCCTCTTGTTGGGGAAGAAGCTGCAGGACCCCCTGAACCTAAGCCTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| CDS TCA 90 bp | AGGAGGGCAGACAGGACAGGGCTCTTTGTAGTTCAGTTCCTCTTATaGTGGCTTTCAGGTGACCGGGCTTTAGCTTCTTGGCAGCCAGCA | + |
|
Preference number: 5 (lower is better) Translates to: RRADRTGLFVVQFLL*WLSGDRALASWQPA Trigger: TGCTGGCTGCCAAGAAGCTAAAGCCCGGTCACCTGAAAGCCATCATAAGAGGAACTGAACTACAAAGAGCCCTGTCCTGTCTGCCCTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135676.2 |
||
| CDS-3UTR CAA 90 bp | ACAGGCTTAGGTTCAGGGGGTCCTGCAGCTTCTTCCCCAACAAGAGGCTGGGAAATAAATAGGGGAATCTaGTCAAATTCCTCCTCCCAC | + |
|
Preference number: 5 (lower is better) Translates to: TGLGSGGPAASSPTRGWEINRGI*SNSSSH Trigger: GTGGGAGGAGGAATTTGACAAGATTCCCCTATTTAT...TTCCCAGCCTCTTGTTGGGGAAGAAGCTGCAGGACCCCCTGAACCTAAGCCTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| CDS TCA 90 bp | GACAGGGCTCTTTGTAGTTCAGTTCCTCTTATGATGGCTTTCAGGTaGCCGGGCTTTAGCTTCTTGGCAGCCAGCACATCATTGAGGGAA | + |
|
Preference number: 5 (lower is better) Translates to: DRALCSSVPLMMAFR*PGFSFLAASTSLRE Trigger: TTCCCTCAATGATGTGCTGGCTGCCAAGAAGCTAAAGCCCGGTCACCTGAAAGCCATCATAAGAGGAACTGAACTACAAAGAGCCCTGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135676.2 |
||
| CDS-3UTR CAA 90 bp | AGTTTATACAGTCAACAGAACAGGATGTGGCTTCATGGCTGCAGTCACTTCATGGCAGCCAGCACATCATaGAGGGAAGAACGAACATTG | + |
|
Preference number: 5 (lower is better) Translates to: SLYSQQNRMWLHGCSHFMAASTS*REERTL Trigger: CAATGTTCGTTCTTCCCTCAATGATGTGCTGGCTGC...CATGAAGTGACTGCAGCCATGAAGCCACATCCTGTTCTGTTGACTGTATAAACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026480.13 |
||
| CDS TCA 72 bp | AGATGGCACAGGGCACCTCTTATGATGGCTTTCAGGTaGCCGGGCTTTAGCTTCTTGGCAGCCAGCACATCA | + |
|
Preference number: 6 (lower is better) Translates to: RWHRAPLMMAFR*PGFSFLAASTS Trigger: TGATGTGCTGGCTGCCAAGAAGCTAAAGCCCGGTCACCTGAAAGCCATCATAAGAGGTGCCCTGTGCCATCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026480.13 ENSMUST00000106772.10 |
||
| CDS TCA 72 bp | GACCGGGCTTTAGCTTCTTGGCAGCCAGCACATCATTaGGGGAAGAACGAACATTGCCGAGATAGTACTGTG | + |
|
Preference number: 6 (lower is better) Translates to: DRALASWQPAHH*GKNEHCRDSTV Trigger: CACAGTACTATCTCGGCAATGTTCGTTCTTCCCTCAATGATGTGCTGGCTGCCAAGAAGCTAAAGCCCGGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026480.13 ENSMUST00000106772.10 ENSMUST00000135676.2 |
||
| CDS CAA 72 bp | GCCTTCCTCAGATCCCTCTCTTCCATCCTCTTTAGCTaGTCTGCTTTTGCCCTTATTTCTAGAAGTTTCTTC | + |
|
Preference number: 6 (lower is better) Translates to: AFLRSLSSILFS*SAFALISRSFF Trigger: GAAGAAACTTCTAGAAATAAGGGCAAAAGCAGACAAGCTAAAGAGGATGGAAGAGAGGGATCTGAGGAAGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026480.13 ENSMUST00000106772.10 ENSMUST00000135676.2 |
||