RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TTC39C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024424

Ensembl transcript IDs: ENSMUST00000025294.9, ENSMUST00000169401.8, ENSMUST00000234255.2, ENSMUST00000234966.2, ENSMUST00000234974.2

Found 189 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AAATATAGGTGCTGCGTGGCTAGGACTGGCAGCAGGGACATGCTGTaGACTTATCTTCTCAGCTCCTGTTTGGTCGGCTCCATTTTGAGA +
Preference number: 1 (lower is better)
Translates to: KYRCCVARTGSRDML*TYLLSSCLVGSILR
Trigger: TCTCAAAATGGAGCCGACCAAACAGGAGCTGAGAAGATAAGTCCACAGCATGTCCCTGCTGCCAGTCCTAGCCACGCAGCACCTATATTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
3UTR CCA 90 bp ACAAGGTCACTTAACCCTCTCCCAGGTCGGGCATTGCTCTCGTTATaGACATCTTTATTACTCCATAGCTACATGTTTAAAAGAGGAATC +
Preference number: 1 (lower is better)
Translates to: TRSLNPLPGRALLSL*TSLLLHSYMFKRGI
Trigger: GATTCCTCTTTTAAACATGTAGCTATGGAGTAATAAAGATGTCCATAACGAGAGCAATGCCCGACCTGGGAGAGGGTTAAGTGACCTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234966.2
3UTR-3UTR CCA 90 bp AGTATGTCAGTGACACCAGGAAACCCATCCCTGGCCCAGGTGGTCTCCAGAAGAGAGGCCAGAGCAGCGTaGATGCGGACGTGCAATCTG +
Preference number: 2 (lower is better)
Translates to: SMSVTPGNPSLAQVVSRREARAA*MRTCNL
Trigger: CAGATTGCACGTCCGCATCCACGCTGCTCTGGCCTC...TCTTCTGGAGACCACCTGGGCCAGGGATGGGTTTCCTGGTGTCACTGACATACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234255.2
3UTR-3UTR CCA 90 bp CTGTGGACTTATCTTCTCAGCTCCTGTTTGGTCGGCTCCATTTTGAGAGCTTTTAGTGCTGACTCTGGGTaGAGGGGACGGAGGGGCCAC +
Preference number: 2 (lower is better)
Translates to: LWTYLLSSCLVGSILRAFSADSG*RGRRGH
Trigger: GTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACT...AAAAGCTCTCAAAATGGAGCCGACCAAACAGGAGCTGAGAAGATAAGTCCACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
3UTR-3UTR CCA 90 bp CAGGTCGGGCATTGCTCTCGTTATGGACATCTTTATTACTCCATAGCTACATGTAGTGCTGACTCTGGGTaGAGGGGACGGAGGGGCCAC +
Preference number: 2 (lower is better)
Translates to: QVGHCSRYGHLYYSIATCSADSG*RGRRGH
Trigger: GTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACT...ACATGTAGCTATGGAGTAATAAAGATGTCCATAACGAGAGCAATGCCCGACCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234966.2
3UTR-3UTR CCA 90 bp GAAACCCATCCCTGGCCCAGGTGGTCTCCAGAAGAAAAGCTGATCTTCAAGAGACATCCCTGGCCCAGGTaGTCTCCAGAAGAAAAGCTG +
Preference number: 2 (lower is better)
Translates to: ETHPWPRWSPEEKLIFKRHPWPR*SPEEKL
Trigger: CAGCTTTTCTTCTGGAGACCACCTGGGCCAGGGATG...TCTCTTGAAGATCAGCTTTTCTTCTGGAGACCACCTGGGCCAGGGATGGGTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
3UTR-3UTR GCA 90 bp CAACCCAACCCTAAAGGGGTTGTCACCCACAGCTTGAGGACTGCTGTGTTAAAGAATTCTGCTTGCCTCTaGCTCCTGTGTGCTAGGACT +
Preference number: 2 (lower is better)
Translates to: QPNPKGVVTHSLRTAVLKNSACL*LLCART
Trigger: AGTCCTAGCACACAGGAGGCAGAGGCAAGCAGAATT...CTTTAACACAGCAGTCCTCAAGCTGTGGGTGACAACCCCTTTAGGGTTGGGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
3UTR-3UTR GCA 90 bp CAGCTCCTGTTTGGTCGGCTCCATTTTGAGAGCTTTTGCAATCTAGGCATGAATCATGGATGGGCCCTATaGTTATGTGGCCCCTGGGGA +
Preference number: 2 (lower is better)
Translates to: QLLFGRLHFESFCNLGMNHGWAL*LCGPWG
Trigger: TCCCCAGGGGCCACATAAGCATAGGGCCCATCCATG...ATTCATGCCTAGATTGCAAAAGCTCTCAAAATGGAGCCGACCAAACAGGAGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
3UTR-3UTR TCA 90 bp TCAGAAATTCTGCTTGCCTCTGCCTCCTGTGTGCTAGGACTAAAGGCATGTGCCTCTTTAGTATGTCAGTaGCACCAGGAAACCCATCCC +
Preference number: 2 (lower is better)
Translates to: SEILLASASCVLGLKACASLVCQ*HQETHP
Trigger: GGGATGGGTTTCCTGGTGTCACTGACATACTAAAGA...GGCACATGCCTTTAGTCCTAGCACACAGGAGGCAGAGGCAAGCAGAATTTCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
3UTR-3UTR GCA 90 bp CAGCTCCTGTTTGGTCGGCTCCATTTTGAGAGCTTTTGCAATCTAGGCATGAATCACTGCCCCATGAAATaGGAGCAACTGGAGAATGTC +
Preference number: 2 (lower is better)
Translates to: QLLFGRLHFESFCNLGMNHCPMK*EQLENV
Trigger: GACATTCTCCAGTTGCTCGCATTTCATGGGGCAGTG...ATTCATGCCTAGATTGCAAAAGCTCTCAAAATGGAGCCGACCAAACAGGAGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
3UTR-3UTR GCA 90 bp CAGCTGTGTAGTACTGAGCACAAAGAACATCCAACCACCAGGAAATCCCAGCAAGCATCTGAGGGGGCATaGGGAGCTACTTTTTGTTTT +
Preference number: 2 (lower is better)
Translates to: QLCSTEHKEHPTTRKSQQASEGA*GATFCF
Trigger: AAAACAAAAAGTAGCTCCGCATGCCCCCTCAGATGC...TTGCTGGGATTTCCTGGTGGTTGGATGTTCTTTGTGCTCAGTACTACACAGCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
3UTR-3UTR CCA 90 bp CAGCTCCTGTTTGGTCGGCTCCATTTTGAGAGCTTTTGCAATCTAGGCATGAATGGCCCTATGCTTATGTaGCCCCTGGGGATAAATACT +
Preference number: 2 (lower is better)
Translates to: QLLFGRLHFESFCNLGMNGPMLM*PLGINT
Trigger: AGTATTTATCCCCAGGGGCCACATAAGCATAGGGCC...ATTCATGCCTAGATTGCAAAAGCTCTCAAAATGGAGCCGACCAAACAGGAGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
3UTR CAA 90 bp TCACTGCCCCATGAAATGCGAGCAACTGGAGAATGTCAGCTGCCATaGCTGTACCTGAGTCTCACTGTACACAAAAGAAGGATAAGAACT +
Preference number: 2 (lower is better)
Translates to: SLPHEMRATGECQLP*LYLSLTVHKRRIRT
Trigger: AGTTCTTATCCTTCTTTTGTGTACAGTGAGACTCAGGTACAGCAATGGCAGCTGACATTCTCCAGTTGCTCGCATTTCATGGGGCAGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
3UTR-3UTR TCA 90 bp AAAGCTGATCTTCAAGAGAGTTTTCTCCTCAGCTTTCATAGTGCTGACTCTGGGCTCCAGAAGAAAAGCTaGTCTTCAAGAGAGTTTTCT +
Preference number: 2 (lower is better)
Translates to: KADLQESFLLSFHSADSGLQKKS*SSREFS
Trigger: AGAAAACTCTCTTGAAGATCAGCTTTTCTTCTGGAG...CCCAGAGTCAGCACTATGAAAGCTGAGGAGAAAACTCTCTTGAAGATCAGCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
3UTR-3UTR CCA 90 bp GCCAAATCATGGCAAGGATTCTTAAAAGTGACTGAGGTGTTTATTCAAGTCCACGCATTGCTCTCGTTATaGACATCTTTATTACTCCAT +
Preference number: 2 (lower is better)
Translates to: AKSWQGFLKVTEVFIQVHALLSL*TSLLLH
Trigger: ATGGAGTAATAAAGATGTCCATAACGAGAGCAATGC...GTGGACTTGAATAAACACCTCAGTCACTTTTAAGAATCCTTGCCATGATTTGGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
3UTR TCA 72 bp GTGGAGGGGACGGAGGGGCCACTGGGAGTTTATCACTaGGGAACAAGTTCCCTTAGGGAGGCCAGAGCAGCG +
Preference number: 3 (lower is better)
Translates to: VEGTEGPLGVYH*GTSSLREARAA
Trigger: CGCTGCTCTGGCCTCCCTAAGGGAACTTGTTCCTCAGTGATAAACTCCCAGTGGCCCCTCCGTCCCCTCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234255.2
3UTR CCA 72 bp CGTTCAGCAAGACTAGCTTGTCAGTGGACCCAGGGTTaGGAGGAGCTCAAGGGATCCTCCTGCCTCTGTGTC +
Preference number: 3 (lower is better)
Translates to: RSARLACQWTQG*EELKGSSCLCV
Trigger: GACACAGAGGCAGGAGGATCCCTTGAGCTCCTCCCAACCCTGGGTCCACTGACAAGCTAGTCTTGCTGAACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
3UTR CCA 72 bp GGAACTACAGCCTCTGTGAGATGTCTGCTAGTGCAGTaGCTCTCGCCCTCCCTAACGCTGCGGCCCTTCAAT +
Preference number: 3 (lower is better)
Translates to: GTTASVRCLLVQ*LSPSLTLRPFN
Trigger: ATTGAAGGGCCGCAGCGTTAGGGAGGGCGAGAGCCACTGCACTAGCAGACATCTCACAGAGGCTGTAGTTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
3UTR-3UTR CAA 90 bp CTGTGGACTTATCTTCTCAGCTCCTGTTTGGTCGGCTCCATTTTGAGAGCTTTTTCAGTGGACCCAGGGTaGGGAGGAGCTCAAGGGATC +
Preference number: 3 (lower is better)
Translates to: LWTYLLSSCLVGSILRAFSVDPG*GGAQGI
Trigger: GATCCCTTGAGCTCCTCCCAACCCTGGGTCCACTGA...AAAAGCTCTCAAAATGGAGCCGACCAAACAGGAGCTGAGAAGATAAGTCCACAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
3UTR GCA 72 bp ATTTTCACAGCAGAACAACTCCTAAAATATAGGTGCTaGGTGGCTAGGACTGGCAGCAGGGACATGCTGTGG +
Preference number: 3 (lower is better)
Translates to: IFTAEQLLKYRC*VARTGSRDMLW
Trigger: CCACAGCATGTCCCTGCTGCCAGTCCTAGCCACGCAGCACCTATATTTTAGGAGTTGTTCTGCTGTGAAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
3UTR-3UTR CAA 90 bp CAACCCAACCCTAAAGGGGTTGTCACCCACAGCTTGAGGACTGCTGTGTTAAAGTCCAGCCTAGAAGGTTaGTGCCATAATCACTATAGG +
Preference number: 3 (lower is better)
Translates to: QPNPKGVVTHSLRTAVLKSSLEG*CHNHYR
Trigger: CCTATAGTGATTATGGCACAAACCTTCTAGGCTGGA...CTTTAACACAGCAGTCCTCAAGCTGTGGGTGACAACCCCTTTAGGGTTGGGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
3UTR-3UTR CAA 90 bp CTCGAAGGAATCAAATGCATCCTTGAAGTTGAGTTCAATCATGCTGCACCAGCCTCATCCAAGCCCCCTTaGTTGTCACTGCCGTCCAAA +
Preference number: 3 (lower is better)
Translates to: LEGIKCILEVEFNHAAPASSKPP*LSLPSK
Trigger: TTTGGACGGCAGTGACAACAAAGGGGGCTTGGATGA...GGCTGGTGCAGCATGATTGAACTCAACTTCAAGGATGCATTTGATTCCTTCGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000234974.2
3UTR GCA 72 bp GAACAAGGTCACTTAACCCTCTCCCAGGTCGGGCATTaGTCTCGTTATGGACATCTTTATTACTCCATAGCT +
Preference number: 3 (lower is better)
Translates to: EQGHLTLSQVGH*SRYGHLYYSIA
Trigger: AGCTATGGAGTAATAAAGATGTCCATAACGAGAGCAATGCCCGACCTGGGAGAGGGTTAAGTGACCTTGTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234966.2
3UTR GCA 72 bp AAGGCATGTGCCACCCCATCCAGCCTAGAAGGTTTGTaGCATAATCACTATAGGAGTATTTCCAGTATAAAG +
Preference number: 3 (lower is better)
Translates to: KACATPSSLEGL*HNHYRSISSIK
Trigger: CTTTATACTGGAAATACTCCTATAGTGATTATGGCACAAACCTTCTAGGCTGGATGGGGTGGCACATGCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
3UTR GCA 72 bp CAGCTCCTGTTTGGTCGGCTCCATTTTGAGAGCTTTTaGAATCTAGGCATGAATGTGTGTAGAAGTGTATGT +
Preference number: 3 (lower is better)
Translates to: QLLFGRLHFESF*NLGMNVCRSVC
Trigger: ACATACACTTCTACACACATTCATGCCTAGATTGCAAAAGCTCTCAAAATGGAGCCGACCAAACAGGAGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
3UTR CCA 72 bp TTCAGCATCAAAAAGTATCAGGTACAAACCACACTCTaGAACTACAGCCTCTGTGAGATGTCTGCTAGTGCA +
Preference number: 3 (lower is better)
Translates to: FSIKKYQVQTTL*NYSLCEMSASA
Trigger: TGCACTAGCAGACATCTCACAGAGGCTGTAGTTCCAGAGTGTGGTTTGTACCTGATACTTTTTGATGCTGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
CDS-3UTR CCA 90 bp CTCCTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGGCCAGAGCAGCGTaGATGCGGACGTGCAATCTG +
Preference number: 4 (lower is better)
Translates to: LLSFHSADSGWRGRRGHWEARAA*MRTCNL
Trigger: CAGATTGCACGTCCGCATCCACGCTGCTCTGGCCTC...CCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCTGAGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234966.2
CDS-3UTR CCA 90 bp CTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGGAAGTCGATCGACCATaGAGGGGGTGGATTTCCGGG +
Preference number: 4 (lower is better)
Translates to: LSFHSADSGWRGRRGHWEEVDRP*RGWISG
Trigger: CCCGGAAATCCACCCCCTCCATGGTCGATCGACTTC...CTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCTGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CCA 90 bp GCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGTTTACGACCATGGAGGGGGTaGATTTCCGGGCATCAACGT +
Preference number: 4 (lower is better)
Translates to: AFIVLTLGGGDGGATGSLRPWRG*ISGHQR
Trigger: ACGTTGATGCCCGGAAATCCACCCCCTCCATGGTCG...TAAACTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CCA 90 bp CTCCTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGACACAGCGCTCTGGTTaGGGTTTGCTTCCGAAATCG +
Preference number: 4 (lower is better)
Translates to: LLSFHSADSGWRGRRGHWTQRSG*GLLPKS
Trigger: CGATTTCGGAAGCAAACCCCAACCAGAGCGCTGTGT...CCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCTGAGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR TCA 90 bp CTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGTGGCGTTCAAAAAGCTaGCGAAGCTGGCTCCAAAAC +
Preference number: 4 (lower is better)
Translates to: LSFHSADSGWRGRRGHWEWRSKS*RSWLQN
Trigger: GTTTTGGAGCCAGCTTCGTCAGCTTTTTGAACGCCA...CTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCTGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CCA 90 bp GAGAGTTTTCTCCTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGAGGCCAGAGCAGCGTaGATGCGGACGTGCAATCTG +
Preference number: 4 (lower is better)
Translates to: ESFLLSFHSADSGWRGRREARAA*MRTCNL
Trigger: CAGATTGCACGTCCGCATCCACGCTGCTCTGGCCTC...CCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCTGAGGAGAAAACTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234966.2
3UTR CAA 72 bp CCGTTCAGCAAGACTAGCTTGTCAGTGGACCCAGGGTaGGGAGGAGCTCAAGGGATCCTCCTGCCTCTGTGT +
Preference number: 4 (lower is better)
Translates to: PFSKTSLSVDPG*GGAQGILLPLC
Trigger: ACACAGAGGCAGGAGGATCCCTTGAGCTCCTCCCAACCCTGGGTCCACTGACAAGCTAGTCTTGCTGAACGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
CDS-3UTR TCA 90 bp GCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGTTTATCACTGAGGAATGGCGTTCAAAAAGCTaGCGAAGCTGGCTCCAAAAC +
Preference number: 4 (lower is better)
Translates to: ADSGWRGRRGHWEFITEEWRSKS*RSWLQN
Trigger: GTTTTGGAGCCAGCTTCGTCAGCTTTTTGAACGCCA...TTCCTCAGTGATAAACTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000234255.2
CDS-3UTR TCA 90 bp CTCCTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGCTCGCTGGAAGAACTaGAGAGCATCTTGTGAGTTT +
Preference number: 4 (lower is better)
Translates to: LLSFHSADSGWRGRRGHWARWKN*RASCEF
Trigger: AAACTCACAAGATGCTCTTCAGTTCTTCCAGCGAGC...CCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCTGAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR GCA 90 bp AGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGTTTTCATACAGACAGACGTaGTGGATCTCCCTCTGGTCC +
Preference number: 4 (lower is better)
Translates to: SFHSADSGWRGRRGHWEFSYRQT*WISLWS
Trigger: GGACCAGAGGGAGATCCAGCACGTCTGTCTGTATGA...AAACTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR GCA 90 bp GCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGTTTATCATACAGACAGACGTaGTGGATCTCCCTCTGGTCC +
Preference number: 4 (lower is better)
Translates to: AFIVLTLGGGDGGATGSLSYRQT*WISLWS
Trigger: GGACCAGAGGGAGATCCAGCACGTCTGTCTGTATGA...TAAACTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR GCA 90 bp GTCAGTGACACCAGGAAACCCATCCCTGGCCCAGGTGGTCTCCAGAAGAAAAGCGCTCTGGTTGGGGTTTaGTTCCGAAATCGCTCAGCC +
Preference number: 4 (lower is better)
Translates to: VSDTRKPIPGPGGLQKKSALVGV*FRNRSA
Trigger: GGCTGAGCGATTTCGGAAGCAAACCCCAACCAGAGC...GCTTTTCTTCTGGAGACCACCTGGGCCAGGGATGGGTTTCCTGGTGTCACTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR GCA 90 bp CTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGGAAGAAGTAGAGTTCTaGCTCTTCCCACAGTCTCTG +
Preference number: 4 (lower is better)
Translates to: LSFHSADSGWRGRRGHWEEEVEF*LFPQSL
Trigger: CAGAGACTGTGGGAAGAGGCAGAACTCTACTTCTTC...CTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234966.2
CDS-3UTR GCA 90 bp AGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGTTTCCAGAGCAGCGTGGATaGGGACGTGCAATCTGTTTT +
Preference number: 4 (lower is better)
Translates to: SFHSADSGWRGRRGHWEFPEQRG*GRAICF
Trigger: AAAACAGATTGCACGTCCGCATCCACGCTGCTCTGG...AAACTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234966.2
CDS-3UTR CCA 90 bp CTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGCCTTCGGCCACAACGTaGTTATCATTTGCAGCATCA +
Preference number: 4 (lower is better)
Translates to: LSFHSADSGWRGRRGHWEPSATT*LSFAAS
Trigger: TGATGCTGCAAATGATAACCACGTTGTGGCCGAAGG...CTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CCA 90 bp CTCCTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGCCTTCGGCCACAACGTaGTTATCATTTGCAGCATCA +
Preference number: 4 (lower is better)
Translates to: LLSFHSADSGWRGRRGHWPSATT*LSFAAS
Trigger: TGATGCTGCAAATGATAACCACGTTGTGGCCGAAGG...CCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCTGAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CCA 90 bp GACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGTTTATCACTGAGGAACAAACACAGCGCTCTGGTTaGGGTTTGCTTCCGAAATCG +
Preference number: 4 (lower is better)
Translates to: DSGWRGRRGHWEFITEEQTQRSG*GLLPKS
Trigger: CGATTTCGGAAGCAAACCCCAACCAGAGCGCTGTGT...TTGTTCCTCAGTGATAAACTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234255.2
CDS-3UTR TCA 90 bp AGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGTTTTCACCAGTGGCTCCCTaGCAAACTGCAGTCAGATAT +
Preference number: 4 (lower is better)
Translates to: SFHSADSGWRGRRGHWEFSPVAP*QTAVRY
Trigger: ATATCTGACTGCAGTTTGTCAGGGAGCCACTGGTGA...AAACTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR TCA 90 bp GCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGTTTATCACCAGTGGCTCCCTaGCAAACTGCAGTCAGATAT +
Preference number: 4 (lower is better)
Translates to: AFIVLTLGGGDGGATGSLSPVAP*QTAVRY
Trigger: ATATCTGACTGCAGTTTGTCAGGGAGCCACTGGTGA...TAAACTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR TCA 90 bp CTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGAAATCCTCCTTTGCCTaGAGAAGTAGAGTTCTGCCT +
Preference number: 4 (lower is better)
Translates to: LSFHSADSGWRGRRGHWEKSSFA*RSRVLP
Trigger: AGGCAGAACTCTACTTCTTCAGGCAAAGGAGGATTT...CTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR GCA 90 bp GCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGTTTAGCGTGGATGCGGACGTaGAATCTGTTTTCAAAGTCG +
Preference number: 4 (lower is better)
Translates to: AFIVLTLGGGDGGATGSLAWMRT*NLFSKS
Trigger: CGACTTTGAAAACAGATTGCACGTCCGCATCCACGC...TAAACTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234966.2
CDS-3UTR GCA 90 bp AGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGTTTGCGTGGATGCGGACGTaGAATCTGTTTTCAAAGTCG +
Preference number: 4 (lower is better)
Translates to: SFHSADSGWRGRRGHWEFAWMRT*NLFSKS
Trigger: CGACTTTGAAAACAGATTGCACGTCCGCATCCACGC...AAACTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234966.2
CDS-3UTR CCA 90 bp TTTATCACTGAGGAACAAGTTCCCTTAGGGAGGCCAGAGCAGCGTGGATGCGGACGACCATGGAGGGGGTaGATTTCCGGGCATCAACGT +
Preference number: 4 (lower is better)
Translates to: FITEEQVPLGRPEQRGCGRPWRG*ISGHQR
Trigger: ACGTTGATGCCCGGAAATCCACCCCCTCCATGGTCG...TCCGCATCCACGCTGCTCTGGCCTCCCTAAGGGAACTTGTTCCTCAGTGATAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000234255.2
CDS-3UTR CCA 90 bp CCAGGAAACCCATCCCTGGCCCAGGTGGTCTCCAGAAGAAAAGCTGATCTTCAAGAAGTCGATCGACCATaGAGGGGGTGGATTTCCGGG +
Preference number: 4 (lower is better)
Translates to: PGNPSLAQVVSRRKADLQEVDRP*RGWISG
Trigger: CCCGGAAATCCACCCCCTCCATGGTCGATCGACTTC...TTGAAGATCAGCTTTTCTTCTGGAGACCACCTGGGCCAGGGATGGGTTTCCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CCA 90 bp GTCAGTGACACCAGGAAACCCATCCCTGGCCCAGGTGGTCTCCAGAAGAAAAGCACACAGCGCTCTGGTTaGGGTTTGCTTCCGAAATCG +
Preference number: 4 (lower is better)
Translates to: VSDTRKPIPGPGGLQKKSTQRSG*GLLPKS
Trigger: CGATTTCGGAAGCAAACCCCAACCAGAGCGCTGTGT...GCTTTTCTTCTGGAGACCACCTGGGCCAGGGATGGGTTTCCTGGTGTCACTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR TCA 90 bp GTCAGTGACACCAGGAAACCCATCCCTGGCCCAGGTGGTCTCCAGAAGAAAAGCGTTCCTGAAGGGCGTTaGTGTCCACATAGCACTTAC +
Preference number: 4 (lower is better)
Translates to: VSDTRKPIPGPGGLQKKSVPEGR*CPHSTY
Trigger: GTAAGTGCTATGTGGACATCAACGCCCTTCAGGAAC...GCTTTTCTTCTGGAGACCACCTGGGCCAGGGATGGGTTTCCTGGTGTCACTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR TCA 90 bp GCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGTTTATCACTGAGGAAAAGTCAAGGCACTGTTaGTTTGACACTCTAACCGCT +
Preference number: 4 (lower is better)
Translates to: ADSGWRGRRGHWEFITEEKSRHC*FDTLTA
Trigger: AGCGGTTAGAGTGTCAAATCAACAGTGCCTTGACTT...TTCCTCAGTGATAAACTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000234255.2
CDS-3UTR GCA 90 bp ATCTTTAGTATGTCAGTGACACCAGGAAACCCATCCCTGGCCCAGGTGGTCTCCGCTCTGGTTGGGGTTTaGTTCCGAAATCGCTCAGCC +
Preference number: 4 (lower is better)
Translates to: IFSMSVTPGNPSLAQVVSALVGV*FRNRSA
Trigger: GGCTGAGCGATTTCGGAAGCAAACCCCAACCAGAGC...GGAGACCACCTGGGCCAGGGATGGGTTTCCTGGTGTCACTGACATACTAAAGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR GCA 90 bp CTCCTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGCACCAAGGAGCAAATaGTTTAATCCAACGACAGAT +
Preference number: 4 (lower is better)
Translates to: LLSFHSADSGWRGRRGHWAPRSK*FNPTTD
Trigger: ATCTGTCGTTGGATTAAAGCATTTGCTCCTTGGTGC...CCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCTGAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CCA 90 bp AACCCATCCCTGGCCCAGGTGGTCTCCAGAAGAAAAGCTGATCTTCAAGAGAGTGAAGTCGATCGACCATaGAGGGGGTGGATTTCCGGG +
Preference number: 4 (lower is better)
Translates to: NPSLAQVVSRRKADLQESEVDRP*RGWISG
Trigger: CCCGGAAATCCACCCCCTCCATGGTCGATCGACTTC...ACTCTCTTGAAGATCAGCTTTTCTTCTGGAGACCACCTGGGCCAGGGATGGGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CCA 90 bp AGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGTTTGGTTTGGGGGCACCATaGATATGCAAAGGTGGAAAA +
Preference number: 4 (lower is better)
Translates to: SFHSADSGWRGRRGHWEFGLGAP*ICKGGK
Trigger: TTTTCCACCTTTGCATATCCATGGTGCCCCCAAACC...AAACTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CCA 90 bp TTCAAGAGAGTTTTCTCCTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGAGGCCAGAGCAGCGTaGATGCGGACGTGCAATCTG +
Preference number: 4 (lower is better)
Translates to: FKRVFSSAFIVLTLGGGDEARAA*MRTCNL
Trigger: CAGATTGCACGTCCGCATCCACGCTGCTCTGGCCTC...GTCCCCTCCACCCAGAGTCAGCACTATGAAAGCTGAGGAGAAAACTCTCTTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234966.2
CDS-3UTR TCA 90 bp AGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGTTTAAATCCTCCTTTGCCTaGAGAAGTAGAGTTCTGCCT +
Preference number: 4 (lower is better)
Translates to: SFHSADSGWRGRRGHWEFKSSFA*RSRVLP
Trigger: AGGCAGAACTCTACTTCTTCAGGCAAAGGAGGATTT...AAACTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR GCA 90 bp AGTATGTCAGTGACACCAGGAAACCCATCCCTGGCCCAGGTGGTCTCCAGAAGAGGGGCACCATGGATATaGAAAGGTGGAAAAGGCCAT +
Preference number: 4 (lower is better)
Translates to: SMSVTPGNPSLAQVVSRRGAPWI*KGGKGH
Trigger: ATGGCCTTTTCCACCTTTGCATATCCATGGTGCCCC...TCTTCTGGAGACCACCTGGGCCAGGGATGGGTTTCCTGGTGTCACTGACATACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR GCA 90 bp ATCTTTAGTATGTCAGTGACACCAGGAAACCCATCCCTGGCCCAGGTGGTCTCCTCATACAGACAGACGTaGTGGATCTCCCTCTGGTCC +
Preference number: 4 (lower is better)
Translates to: IFSMSVTPGNPSLAQVVSSYRQT*WISLWS
Trigger: GGACCAGAGGGAGATCCAGCACGTCTGTCTGTATGA...GGAGACCACCTGGGCCAGGGATGGGTTTCCTGGTGTCACTGACATACTAAAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR GCA 90 bp GAAACCCATCCCTGGCCCAGGTGGTCTCCAGAAGAAAAGCTGATCTTCAAGAGAGCTCTGGTTGGGGTTTaGTTCCGAAATCGCTCAGCC +
Preference number: 4 (lower is better)
Translates to: ETHPWPRWSPEEKLIFKRALVGV*FRNRSA
Trigger: GGCTGAGCGATTTCGGAAGCAAACCCCAACCAGAGC...TCTCTTGAAGATCAGCTTTTCTTCTGGAGACCACCTGGGCCAGGGATGGGTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CCA 90 bp TTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGTTTATCAGGTTTGGGGGCACCATaGATATGCAAAGGTGGAAAA +
Preference number: 4 (lower is better)
Translates to: FIVLTLGGGDGGATGSLSGLGAP*ICKGGK
Trigger: TTTTCCACCTTTGCATATCCATGGTGCCCCCAAACC...TGATAAACTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000234255.2
CDS-3UTR CCA 90 bp TGGGAGTTTATCACTGAGGAACAAGTTCCCTTAGGGAGGCCAGAGCAGCGTGGAAGCTCCAGAGCAGTGTaGAAGGAAGTCAAGGCACTG +
Preference number: 4 (lower is better)
Translates to: WEFITEEQVPLGRPEQRGSSRAV*KEVKAL
Trigger: CAGTGCCTTGACTTCCTTCCACACTGCTCTGGAGCT...TCCACGCTGCTCTGGCCTCCCTAAGGGAACTTGTTCCTCAGTGATAAACTCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234255.2
CDS-3UTR CCA 90 bp TTTAGTATGTCAGTGACACCAGGAAACCCATCCCTGGCCCAGGTGGTCTCCAGAAGCTCCAGAGCAGTGTaGAAGGAAGTCAAGGCACTG +
Preference number: 4 (lower is better)
Translates to: FSMSVTPGNPSLAQVVSRSSRAV*KEVKAL
Trigger: CAGTGCCTTGACTTCCTTCCACACTGCTCTGGAGCT...TCTGGAGACCACCTGGGCCAGGGATGGGTTTCCTGGTGTCACTGACATACTAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR TCA 90 bp ATCTTTAGTATGTCAGTGACACCAGGAAACCCATCCCTGGCCCAGGTGGTCTCCTCACCAGTGGCTCCCTaGCAAACTGCAGTCAGATAT +
Preference number: 4 (lower is better)
Translates to: IFSMSVTPGNPSLAQVVSSPVAP*QTAVRY
Trigger: ATATCTGACTGCAGTTTGTCAGGGAGCCACTGGTGA...GGAGACCACCTGGGCCAGGGATGGGTTTCCTGGTGTCACTGACATACTAAAGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR TCA 90 bp TTTATCACTGAGGAACAAGTTCCCTTAGGGAGGCCAGAGCAGCGTGGATGCGGATCACCAGTGGCTCCCTaGCAAACTGCAGTCAGATAT +
Preference number: 4 (lower is better)
Translates to: FITEEQVPLGRPEQRGCGSPVAP*QTAVRY
Trigger: ATATCTGACTGCAGTTTGTCAGGGAGCCACTGGTGA...TCCGCATCCACGCTGCTCTGGCCTCCCTAAGGGAACTTGTTCCTCAGTGATAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234255.2
CDS-3UTR GCA 90 bp TGGGAGTTTATCACTGAGGAACAAGTTCCCTTAGGGAGGCCAGAGCAGCGTGGAGGGGCACCATGGATATaGAAAGGTGGAAAAGGCCAT +
Preference number: 4 (lower is better)
Translates to: WEFITEEQVPLGRPEQRGGAPWI*KGGKGH
Trigger: ATGGCCTTTTCCACCTTTGCATATCCATGGTGCCCC...TCCACGCTGCTCTGGCCTCCCTAAGGGAACTTGTTCCTCAGTGATAAACTCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234255.2
CDS-3UTR GCA 90 bp AACCCATCCCTGGCCCAGGTGGTCTCCAGAAGAAAAGCTGATCTTCAAGAGAGTTCATACAGACAGACGTaGTGGATCTCCCTCTGGTCC +
Preference number: 4 (lower is better)
Translates to: NPSLAQVVSRRKADLQESSYRQT*WISLWS
Trigger: GGACCAGAGGGAGATCCAGCACGTCTGTCTGTATGA...ACTCTCTTGAAGATCAGCTTTTCTTCTGGAGACCACCTGGGCCAGGGATGGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CCA 90 bp ATCTTCAAGAGAGTTTTCTCCTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGCGACCATGGAGGGGGTaGATTTCCGGGCATCAACGT +
Preference number: 4 (lower is better)
Translates to: IFKRVFSSAFIVLTLGGGRPWRG*ISGHQR
Trigger: ACGTTGATGCCCGGAAATCCACCCCCTCCATGGTCG...CCCTCCACCCAGAGTCAGCACTATGAAAGCTGAGGAGAAAACTCTCTTGAAGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CCA 90 bp AGTATGTCAGTGACACCAGGAAACCCATCCCTGGCCCAGGTGGTCTCCAGAAGACCTTCGGCCACAACGTaGTTATCATTTGCAGCATCA +
Preference number: 4 (lower is better)
Translates to: SMSVTPGNPSLAQVVSRRPSATT*LSFAAS
Trigger: TGATGCTGCAAATGATAACCACGTTGTGGCCGAAGG...TCTTCTGGAGACCACCTGGGCCAGGGATGGGTTTCCTGGTGTCACTGACATACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR TCA 90 bp AGCCAGCTCCAGAGCAGTGTGGAAGGAAGTCAAGGCACTGTTGATTTGACACTCTGGCGTTCAAAAAGCTaGCGAAGCTGGCTCCAAAAC +
Preference number: 4 (lower is better)
Translates to: SQLQSSVEGSQGTVDLTLWRSKS*RSWLQN
Trigger: GTTTTGGAGCCAGCTTCGTCAGCTTTTTGAACGCCA...GAGTGTCAAATCAACAGTGCCTTGACTTCCTTCCACACTGCTCTGGAGCTGGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000234974.2
CDS-3UTR TCA 90 bp GAGAGTTTTCTCCTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGAAGTCAAGGCACTGTTaGTTTGACACTCTAACCGCT +
Preference number: 4 (lower is better)
Translates to: ESFLLSFHSADSGWRGRRKSRHC*FDTLTA
Trigger: AGCGGTTAGAGTGTCAAATCAACAGTGCCTTGACTT...CCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCTGAGGAGAAAACTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR TCA 90 bp TTTAGTATGTCAGTGACACCAGGAAACCCATCCCTGGCCCAGGTGGTCTCCAGAGCTCGCTGGAAGAACTaGAGAGCATCTTGTGAGTTT +
Preference number: 4 (lower is better)
Translates to: FSMSVTPGNPSLAQVVSRARWKN*RASCEF
Trigger: AAACTCACAAGATGCTCTTCAGTTCTTCCAGCGAGC...TCTGGAGACCACCTGGGCCAGGGATGGGTTTCCTGGTGTCACTGACATACTAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR GCA 90 bp CAACCCAACCCTAAAGGGGTTGTCACCCACAGCTTGAGGACTGCTGTGTTAAAGGGGGCACCATGGATATaGAAAGGTGGAAAAGGCCAT +
Preference number: 4 (lower is better)
Translates to: QPNPKGVVTHSLRTAVLKGAPWI*KGGKGH
Trigger: ATGGCCTTTTCCACCTTTGCATATCCATGGTGCCCC...CTTTAACACAGCAGTCCTCAAGCTGTGGGTGACAACCCCTTTAGGGTTGGGTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
CDS-3UTR CCA 90 bp CTGATCTTCAAGAGAGTTTTCTCCTCAGCTTTCATAGTGCTGACTCTGGGTGGACGACCATGGAGGGGGTaGATTTCCGGGCATCAACGT +
Preference number: 4 (lower is better)
Translates to: LIFKRVFSSAFIVLTLGGRPWRG*ISGHQR
Trigger: ACGTTGATGCCCGGAAATCCACCCCCTCCATGGTCG...TCCACCCAGAGTCAGCACTATGAAAGCTGAGGAGAAAACTCTCTTGAAGATCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CCA 90 bp CAGCTCCTGTTTGGTCGGCTCCATTTTGAGAGCTTTTGCAATCTAGGCATGAATGAAGTCGATCGACCATaGAGGGGGTGGATTTCCGGG +
Preference number: 4 (lower is better)
Translates to: QLLFGRLHFESFCNLGMNEVDRP*RGWISG
Trigger: CCCGGAAATCCACCCCCTCCATGGTCGATCGACTTC...ATTCATGCCTAGATTGCAAAAGCTCTCAAAATGGAGCCGACCAAACAGGAGCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
CDS-3UTR CCA 90 bp TTTAGTATGTCAGTGACACCAGGAAACCCATCCCTGGCCCAGGTGGTCTCCAGACCTTCGGCCACAACGTaGTTATCATTTGCAGCATCA +
Preference number: 4 (lower is better)
Translates to: FSMSVTPGNPSLAQVVSRPSATT*LSFAAS
Trigger: TGATGCTGCAAATGATAACCACGTTGTGGCCGAAGG...TCTGGAGACCACCTGGGCCAGGGATGGGTTTCCTGGTGTCACTGACATACTAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR TCA 90 bp TTCAAGAGAGTTTTCTCCTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGTTCCTGAAGGGCGTTaGTGTCCACATAGCACTTAC +
Preference number: 4 (lower is better)
Translates to: FKRVFSSAFIVLTLGGGDVPEGR*CPHSTY
Trigger: GTAAGTGCTATGTGGACATCAACGCCCTTCAGGAAC...GTCCCCTCCACCCAGAGTCAGCACTATGAAAGCTGAGGAGAAAACTCTCTTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR GCA 90 bp TTCAAGAGAGTTTTCTCCTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGGGCACCATGGATATaGAAAGGTGGAAAAGGCCAT +
Preference number: 4 (lower is better)
Translates to: FKRVFSSAFIVLTLGGGDGAPWI*KGGKGH
Trigger: ATGGCCTTTTCCACCTTTGCATATCCATGGTGCCCC...GTCCCCTCCACCCAGAGTCAGCACTATGAAAGCTGAGGAGAAAACTCTCTTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR GCA 90 bp CCATCCCTGGCCCAGGTGGTCTCCAGAAGAAAAGCTGATCTTCAAGAGAGTTTTGCGTGGATGCGGACGTaGAATCTGTTTTCAAAGTCG +
Preference number: 4 (lower is better)
Translates to: PSLAQVVSRRKADLQESFAWMRT*NLFSKS
Trigger: CGACTTTGAAAACAGATTGCACGTCCGCATCCACGC...AAAACTCTCTTGAAGATCAGCTTTTCTTCTGGAGACCACCTGGGCCAGGGATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234966.2
CDS-3UTR TCA 90 bp AACCCATCCCTGGCCCAGGTGGTCTCCAGAAGAAAAGCTGATCTTCAAGAGAGTAAATCCTCCTTTGCCTaGAGAAGTAGAGTTCTGCCT +
Preference number: 4 (lower is better)
Translates to: NPSLAQVVSRRKADLQESKSSFA*RSRVLP
Trigger: AGGCAGAACTCTACTTCTTCAGGCAAAGGAGGATTT...ACTCTCTTGAAGATCAGCTTTTCTTCTGGAGACCACCTGGGCCAGGGATGGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR GCA 90 bp CAGGTCGGGCATTGCTCTCGTTATGGACATCTTTATTACTCCATAGCTACATGTGCTCTGGTTGGGGTTTaGTTCCGAAATCGCTCAGCC +
Preference number: 4 (lower is better)
Translates to: QVGHCSRYGHLYYSIATCALVGV*FRNRSA
Trigger: GGCTGAGCGATTTCGGAAGCAAACCCCAACCAGAGC...ACATGTAGCTATGGAGTAATAAAGATGTCCATAACGAGAGCAATGCCCGACCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234966.2
CDS-3UTR GCA 90 bp CCAGGAAACCCATCCCTGGCCCAGGTGGTCTCCAGAAGAAAAGCTGATCTTCAAGCACCAAGGAGCAAATaGTTTAATCCAACGACAGAT +
Preference number: 4 (lower is better)
Translates to: PGNPSLAQVVSRRKADLQAPRSK*FNPTTD
Trigger: ATCTGTCGTTGGATTAAAGCATTTGCTCCTTGGTGC...TTGAAGATCAGCTTTTCTTCTGGAGACCACCTGGGCCAGGGATGGGTTTCCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CCA 90 bp GGAATCAAATGCATCCTTGAAGTTGAGTTCAATCATGCTGCACCAGCCAATTTCCGACCATGGAGGGGGTaGATTTCCGGGCATCAACGT +
Preference number: 4 (lower is better)
Translates to: GIKCILEVEFNHAAPANFRPWRG*ISGHQR
Trigger: ACGTTGATGCCCGGAAATCCACCCCCTCCATGGTCG...GAAATTGGCTGGTGCAGCATGATTGAACTCAACTTCAAGGATGCATTTGATTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000234974.2
CDS-3UTR CCA 90 bp GGAATCAAATGCATCCTTGAAGTTGAGTTCAATCATGCTGCACCAGCCAATTTCGAAGTCGATCGACCATaGAGGGGGTGGATTTCCGGG +
Preference number: 4 (lower is better)
Translates to: GIKCILEVEFNHAAPANFEVDRP*RGWISG
Trigger: CCCGGAAATCCACCCCCTCCATGGTCGATCGACTTC...GAAATTGGCTGGTGCAGCATGATTGAACTCAACTTCAAGGATGCATTTGATTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000234974.2
CDS-3UTR CCA 90 bp TTCAAGAGAGTTTTCTCCTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGTTTGGGGGCACCATaGATATGCAAAGGTGGAAAA +
Preference number: 4 (lower is better)
Translates to: FKRVFSSAFIVLTLGGGDGLGAP*ICKGGK
Trigger: TTTTCCACCTTTGCATATCCATGGTGCCCCCAAACC...GTCCCCTCCACCCAGAGTCAGCACTATGAAAGCTGAGGAGAAAACTCTCTTGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR TCA 90 bp CTGTGGACTTATCTTCTCAGCTCCTGTTTGGTCGGCTCCATTTTGAGAGCTTTTTGGCGTTCAAAAAGCTaGCGAAGCTGGCTCCAAAAC +
Preference number: 4 (lower is better)
Translates to: LWTYLLSSCLVGSILRAFWRSKS*RSWLQN
Trigger: GTTTTGGAGCCAGCTTCGTCAGCTTTTTGAACGCCA...AAAAGCTCTCAAAATGGAGCCGACCAAACAGGAGCTGAGAAGATAAGTCCACAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
CDS-3UTR TCA 90 bp CTGTGGACTTATCTTCTCAGCTCCTGTTTGGTCGGCTCCATTTTGAGAGCTTTTGTTCCTGAAGGGCGTTaGTGTCCACATAGCACTTAC +
Preference number: 4 (lower is better)
Translates to: LWTYLLSSCLVGSILRAFVPEGR*CPHSTY
Trigger: GTAAGTGCTATGTGGACATCAACGCCCTTCAGGAAC...AAAAGCTCTCAAAATGGAGCCGACCAAACAGGAGCTGAGAAGATAAGTCCACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
CDS-3UTR TCA 90 bp CTCGAAGGAATCAAATGCATCCTTGAAGTTGAGTTCAATCATGCTGCACCAGCCGTTCCTGAAGGGCGTTaGTGTCCACATAGCACTTAC +
Preference number: 4 (lower is better)
Translates to: LEGIKCILEVEFNHAAPAVPEGR*CPHSTY
Trigger: GTAAGTGCTATGTGGACATCAACGCCCTTCAGGAAC...GGCTGGTGCAGCATGATTGAACTCAACTTCAAGGATGCATTTGATTCCTTCGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234974.2
CDS-3UTR TCA 90 bp TTCAAGAGAGTTTTCTCCTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACAAGTCAAGGCACTGTTaGTTTGACACTCTAACCGCT +
Preference number: 4 (lower is better)
Translates to: FKRVFSSAFIVLTLGGGDKSRHC*FDTLTA
Trigger: AGCGGTTAGAGTGTCAAATCAACAGTGCCTTGACTT...GTCCCCTCCACCCAGAGTCAGCACTATGAAAGCTGAGGAGAAAACTCTCTTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR TCA 90 bp ATCTTCAAGAGAGTTTTCTCCTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGGCTCGCTGGAAGAACTaGAGAGCATCTTGTGAGTTT +
Preference number: 4 (lower is better)
Translates to: IFKRVFSSAFIVLTLGGGARWKN*RASCEF
Trigger: AAACTCACAAGATGCTCTTCAGTTCTTCCAGCGAGC...CCCTCCACCCAGAGTCAGCACTATGAAAGCTGAGGAGAAAACTCTCTTGAAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR GCA 90 bp ATCTTTAGTATGTCAGTGACACCAGGAAACCCATCCCTGGCCCAGGTGGTCTCCCTCGAAGGAATCAAATaGATCCTTGAAGTTGAGTTC +
Preference number: 4 (lower is better)
Translates to: IFSMSVTPGNPSLAQVVSLEGIK*ILEVEF
Trigger: GAACTCAACTTCAAGGATGCATTTGATTCCTTCGAG...GGAGACCACCTGGGCCAGGGATGGGTTTCCTGGTGTCACTGACATACTAAAGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR GCA 90 bp GAAACCCATCCCTGGCCCAGGTGGTCTCCAGAAGAAAAGCTGATCTTCAAGAGAGCACCAAGGAGCAAATaGTTTAATCCAACGACAGAT +
Preference number: 4 (lower is better)
Translates to: ETHPWPRWSPEEKLIFKRAPRSK*FNPTTD
Trigger: ATCTGTCGTTGGATTAAAGCATTTGCTCCTTGGTGC...TCTCTTGAAGATCAGCTTTTCTTCTGGAGACCACCTGGGCCAGGGATGGGTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR GCA 90 bp AAAGCTGATCTTCAAGAGAGTTTTCTCCTCAGCTTTCATAGTGCTGACTCTGGGCCAGAGCAGCGTGGATaGGGACGTGCAATCTGTTTT +
Preference number: 4 (lower is better)
Translates to: KADLQESFLLSFHSADSGPEQRG*GRAICF
Trigger: AAAACAGATTGCACGTCCGCATCCACGCTGCTCTGG...CCCAGAGTCAGCACTATGAAAGCTGAGGAGAAAACTCTCTTGAAGATCAGCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234966.2
CDS-3UTR GCA 90 bp ATCTTCAAGAGAGTTTTCTCCTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGGAAGAAGTAGAGTTCTaGCTCTTCCCACAGTCTGTG +
Preference number: 4 (lower is better)
Translates to: IFKRVFSSAFIVLTLGGGEEVEF*LFPQSV
Trigger: CACAGACTGTGGGAAGAGGCAGAACTCTACTTCTTC...CCCTCCACCCAGAGTCAGCACTATGAAAGCTGAGGAGAAAACTCTCTTGAAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234255.2
CDS-3UTR CCA 90 bp AAAGCTGATCTTCAAGAGAGTTTTCTCCTCAGCTTTCATAGTGCTGACTCTGGGAGCTCCAGAGCAGTGTaGAAGGAAGTCAAGGCACTG +
Preference number: 4 (lower is better)
Translates to: KADLQESFLLSFHSADSGSSRAV*KEVKAL
Trigger: CAGTGCCTTGACTTCCTTCCACACTGCTCTGGAGCT...CCCAGAGTCAGCACTATGAAAGCTGAGGAGAAAACTCTCTTGAAGATCAGCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CCA 90 bp GTCAGTGACACCAGGAAACCCATCCCTGGCCCAGGTGGTCTCCAGAAGAAAAGCCTTTTGAACAGCTTCTaGACTTCTTTAAGAACAAGT +
Preference number: 4 (lower is better)
Translates to: VSDTRKPIPGPGGLQKKSLLNSF*TSLRTS
Trigger: ACTTGTTCTTAAAGAAGTCCAGAAGCTGTTCAAAAG...GCTTTTCTTCTGGAGACCACCTGGGCCAGGGATGGGTTTCCTGGTGTCACTGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CCA 90 bp TTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGTTTATCCTTTTGAACAGCTTCTaGACTTCTTTAAGAACAAGT +
Preference number: 4 (lower is better)
Translates to: FHSADSGWRGRRGHWEFILLNSF*TSLRTS
Trigger: ACTTGTTCTTAAAGAAGTCCAGAAGCTGTTCAAAAG...GATAAACTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000234255.2
CDS-3UTR CCA 90 bp CAGGTCGGGCATTGCTCTCGTTATGGACATCTTTATTACTCCATAGCTACATGTACACAGCGCTCTGGTTaGGGTTTGCTTCCGAAATCG +
Preference number: 4 (lower is better)
Translates to: QVGHCSRYGHLYYSIATCTQRSG*GLLPKS
Trigger: CGATTTCGGAAGCAAACCCCAACCAGAGCGCTGTGT...ACATGTAGCTATGGAGTAATAAAGATGTCCATAACGAGAGCAATGCCCGACCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234966.2
CDS-3UTR TCA 90 bp AAAGCTGATCTTCAAGAGAGTTTTCTCCTCAGCTTTCATAGTGCTGACTCTGGGGTTCCTGAAGGGCGTTaGTGTCCACATAGCACTTAC +
Preference number: 4 (lower is better)
Translates to: KADLQESFLLSFHSADSGVPEGR*CPHSTY
Trigger: GTAAGTGCTATGTGGACATCAACGCCCTTCAGGAAC...CCCAGAGTCAGCACTATGAAAGCTGAGGAGAAAACTCTCTTGAAGATCAGCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR TCA 90 bp CTGTGGACTTATCTTCTCAGCTCCTGTTTGGTCGGCTCCATTTTGAGAGCTTTTTATTGTTTGAAAAGCTaGTCCGACTCCCTGAAGCCG +
Preference number: 4 (lower is better)
Translates to: LWTYLLSSCLVGSILRAFYCLKS*SDSLKP
Trigger: CGGCTTCAGGGAGTCGGATCAGCTTTTCAAACAATA...AAAAGCTCTCAAAATGGAGCCGACCAAACAGGAGCTGAGAAGATAAGTCCACAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
CDS-3UTR TCA 90 bp TTCAAGAGAGTTTTCTCCTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGATTTCTGTATTGTTTaGAAAGCTGATCCGACTCCC +
Preference number: 4 (lower is better)
Translates to: FKRVFSSAFIVLTLGGGDDFCIV*KADPTP
Trigger: GGGAGTCGGATCAGCTTTTCAAACAATACAGAAATC...GTCCCCTCCACCCAGAGTCAGCACTATGAAAGCTGAGGAGAAAACTCTCTTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
CDS-3UTR GCA 90 bp AACCCATCCCTGGCCCAGGTGGTCTCCAGAAGAAAAGCTGATCTTCAAGAGAGTCTCGAAGGAATCAAATaGATCCTTGAAGTTGAGTTC +
Preference number: 4 (lower is better)
Translates to: NPSLAQVVSRRKADLQESLEGIK*ILEVEF
Trigger: GAACTCAACTTCAAGGATGCATTTGATTCCTTCGAG...ACTCTCTTGAAGATCAGCTTTTCTTCTGGAGACCACCTGGGCCAGGGATGGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR GCA 90 bp GAAACCCATCCCTGGCCCAGGTGGTCTCCAGAAGAAAAGCTGATCTTCAAGAGACTCGAAGGAATCAAATaGATCCTTGAAGTTGAGTTC +
Preference number: 4 (lower is better)
Translates to: ETHPWPRWSPEEKLIFKRLEGIK*ILEVEF
Trigger: GAACTCAACTTCAAGGATGCATTTGATTCCTTCGAG...TCTCTTGAAGATCAGCTTTTCTTCTGGAGACCACCTGGGCCAGGGATGGGTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CCA 90 bp CTCGAAGGAATCAAATGCATCCTTGAAGTTGAGTTCAATCATGCTGCACCAGCCGGTTTGGGGGCACCATaGATATGCAAAGGTGGAAAA +
Preference number: 4 (lower is better)
Translates to: LEGIKCILEVEFNHAAPAGLGAP*ICKGGK
Trigger: TTTTCCACCTTTGCATATCCATGGTGCCCCCAAACC...GGCTGGTGCAGCATGATTGAACTCAACTTCAAGGATGCATTTGATTCCTTCGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000234974.2
3UTR CAA 72 bp CATGAAATGCGAGCAACTGGAGAATGTCAGCTGCCATaGCTGTACCTGAGTCTCACTGTACACAAAAGAAGG +
Preference number: 4 (lower is better)
Translates to: HEMRATGECQLP*LYLSLTVHKRR
Trigger: CCTTCTTTTGTGTACAGTGAGACTCAGGTACAGCAATGGCAGCTGACATTCTCCAGTTGCTCGCATTTCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
CDS-3UTR GCA 90 bp GGAATCAAATGCATCCTTGAAGTTGAGTTCAATCATGCTGCACCAGCCAATTTCGGGGCACCATGGATATaGAAAGGTGGAAAAGGCCAT +
Preference number: 4 (lower is better)
Translates to: GIKCILEVEFNHAAPANFGAPWI*KGGKGH
Trigger: ATGGCCTTTTCCACCTTTGCATATCCATGGTGCCCC...GAAATTGGCTGGTGCAGCATGATTGAACTCAACTTCAAGGATGCATTTGATTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234974.2
CDS-3UTR CCA 90 bp GAAGAAAAGCTGATCTTCAAGAGAGTTTTCTCCTCAGCTTTCATAGTGCTGACTAGCTCCAGAGCAGTGTaGAAGGAAGTCAAGGCACTG +
Preference number: 4 (lower is better)
Translates to: EEKLIFKRVFSSAFIVLTSSRAV*KEVKAL
Trigger: CAGTGCCTTGACTTCCTTCCACACTGCTCTGGAGCT...AGTCAGCACTATGAAAGCTGAGGAGAAAACTCTCTTGAAGATCAGCTTTTCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CCA 90 bp CCAGGAAACCCATCCCTGGCCCAGGTGGTCTCCAGAAGAAAAGCTGATCTTCAACTTTTGAACAGCTTCTaGACTTCTTTAAGAACAAGT +
Preference number: 4 (lower is better)
Translates to: PGNPSLAQVVSRRKADLQLLNSF*TSLRTS
Trigger: ACTTGTTCTTAAAGAAGTCCAGAAGCTGTTCAAAAG...TTGAAGATCAGCTTTTCTTCTGGAGACCACCTGGGCCAGGGATGGGTTTCCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR TCA 90 bp AAAGCTGATCTTCAAGAGAGTTTTCTCCTCAGCTTTCATAGTGCTGACTCTGGGAAGTCAAGGCACTGTTaGTTTGACACTCTAACCGCT +
Preference number: 4 (lower is better)
Translates to: KADLQESFLLSFHSADSGKSRHC*FDTLTA
Trigger: AGCGGTTAGAGTGTCAAATCAACAGTGCCTTGACTT...CCCAGAGTCAGCACTATGAAAGCTGAGGAGAAAACTCTCTTGAAGATCAGCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR GCA 90 bp GAACTTTTATTCAGAAATTCTGCTTGCCTCTGCCTCCTGTGTGCTAGGACTAAAGAAGAAGTAGAGTTCTaGCTCTTCCCACAGTCTCTG +
Preference number: 4 (lower is better)
Translates to: ELLFRNSACLCLLCARTKEEVEF*LFPQSL
Trigger: CAGAGACTGTGGGAAGAGGCAGAACTCTACTTCTTC...TTTAGTCCTAGCACACAGGAGGCAGAGGCAAGCAGAATTTCTGAATAAAAGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
CDS-3UTR CCA 90 bp GGAATCAAATGCATCCTTGAAGTTGAGTTCAATCATGCTGCACCAGCCAATTTCCCTTCGGCCACAACGTaGTTATCATTTGCAGCATCA +
Preference number: 4 (lower is better)
Translates to: GIKCILEVEFNHAAPANFPSATT*LSFAAS
Trigger: TGATGCTGCAAATGATAACCACGTTGTGGCCGAAGG...GAAATTGGCTGGTGCAGCATGATTGAACTCAACTTCAAGGATGCATTTGATTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234974.2
3UTR CAA 72 bp CTAAAGGCATGTGCCACCCCATCCAGCCTAGAAGGTTaGTGCCATAATCACTATAGGAGTATTTCCAGTATA +
Preference number: 4 (lower is better)
Translates to: LKACATPSSLEG*CHNHYRSISSI
Trigger: TATACTGGAAATACTCCTATAGTGATTATGGCACAAACCTTCTAGGCTGGATGGGGTGGCACATGCCTTTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
CDS-3UTR TCA 90 bp CGGGCATTGCTCTCGTTATGGACATCTTTATTACTCCATAGCTACATGTTTAAATGGCGTTCAAAAAGCTaGCGAAGCTGGCTCCAAAAC +
Preference number: 4 (lower is better)
Translates to: RALLSLWTSLLLHSYMFKWRSKS*RSWLQN
Trigger: GTTTTGGAGCCAGCTTCGTCAGCTTTTTGAACGCCA...TTTAAACATGTAGCTATGGAGTAATAAAGATGTCCATAACGAGAGCAATGCCCG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234966.2
CDS-3UTR TCA 90 bp GAACTTTTATTCAGAAATTCTGCTTGCCTCTGCCTCCTGTGTGCTAGGACTAAAAAATCCTCCTTTGCCTaGAGAAGTAGAGTTCTGCCT +
Preference number: 4 (lower is better)
Translates to: ELLFRNSACLCLLCARTKKSSFA*RSRVLP
Trigger: AGGCAGAACTCTACTTCTTCAGGCAAAGGAGGATTT...TTTAGTCCTAGCACACAGGAGGCAGAGGCAAGCAGAATTTCTGAATAAAAGTTC
43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
CDS-3UTR GCA 90 bp GAAGAAAAGCTGATCTTCAAGAGAGTTTTCTCCTCAGCTTTCATAGTGCTGACTGAAGAAGTAGAGTTCTaGCTCTTCCCACAGTCTCTG +
Preference number: 4 (lower is better)
Translates to: EEKLIFKRVFSSAFIVLTEEVEF*LFPQSL
Trigger: CAGAGACTGTGGGAAGAGGCAGAACTCTACTTCTTC...AGTCAGCACTATGAAAGCTGAGGAGAAAACTCTCTTGAAGATCAGCTTTTCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234966.2
CDS-3UTR TCA 90 bp CGGGCATTGCTCTCGTTATGGACATCTTTATTACTCCATAGCTACATGTTTAAAGCTCGCTGGAAGAACTaGAGAGCATCTTGTGAGTTT +
Preference number: 4 (lower is better)
Translates to: RALLSLWTSLLLHSYMFKARWKN*RASCEF
Trigger: AAACTCACAAGATGCTCTTCAGTTCTTCCAGCGAGC...TTTAAACATGTAGCTATGGAGTAATAAAGATGTCCATAACGAGAGCAATGCCCG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234966.2
CDS-3UTR GCA 90 bp AAAGCTGATCTTCAAGAGAGTTTTCTCCTCAGCTTTCATAGTGCTGACTCTGGGCTCGAAGGAATCAAATaGATCCTTGAAGTTGAGTTC +
Preference number: 4 (lower is better)
Translates to: KADLQESFLLSFHSADSGLEGIK*ILEVEF
Trigger: GAACTCAACTTCAAGGATGCATTTGATTCCTTCGAG...CCCAGAGTCAGCACTATGAAAGCTGAGGAGAAAACTCTCTTGAAGATCAGCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR GCA 90 bp CGGGCATTGCTCTCGTTATGGACATCTTTATTACTCCATAGCTACATGTTTAAAGCACCAAGGAGCAAATaGTTTAATCCAACGACAGAT +
Preference number: 4 (lower is better)
Translates to: RALLSLWTSLLLHSYMFKAPRSK*FNPTTD
Trigger: ATCTGTCGTTGGATTAAAGCATTTGCTCCTTGGTGC...TTTAAACATGTAGCTATGGAGTAATAAAGATGTCCATAACGAGAGCAATGCCCG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234966.2
CDS-3UTR CCA 90 bp GAAGAAAAGCTGATCTTCAAGAGAGTTTTCTCCTCAGCTTTCATAGTGCTGACTCTTTTGAACAGCTTCTaGACTTCTTTAAGAACAAGT +
Preference number: 4 (lower is better)
Translates to: EEKLIFKRVFSSAFIVLTLLNSF*TSLRTS
Trigger: ACTTGTTCTTAAAGAAGTCCAGAAGCTGTTCAAAAG...AGTCAGCACTATGAAAGCTGAGGAGAAAACTCTCTTGAAGATCAGCTTTTCTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS GCA 90 bp TTGTTGAGAAGCATATTGATGCCAGCCAAGGCCAGCTCCGCGTCCTaGAGGGGCGCCGCTGCGGCGTCCGGGTCGCCGTCCTCCCTCCGC +
Preference number: 5 (lower is better)
Translates to: LLRSILMPAKASSAS*RGAAAASGSPSSLR
Trigger: GCGGAGGGAGGACGGCGACCCGGACGCCGCAGCGGCGCCCCTGCAGGACGCGGAGCTGGCCTTGGCTGGCATCAATATGCTTCTCAACAA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp CTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGAGCAGGTTGATGATTTaGAGCAGGTTTGGGGGCACC +
Preference number: 5 (lower is better)
Translates to: LSFHSADSGWRGRRGHWESRLMI*SRFGGT
Trigger: GGTGCCCCCAAACCTGCTCAAAATCATCAACCTGCT...CTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCTGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp GCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGTTTATCACTGAGGAACACACAGCGCTCTGGTaGGGGTTTGCTTCCGAAATC +
Preference number: 5 (lower is better)
Translates to: ADSGWRGRRGHWEFITEEHTALW*GFASEI
Trigger: GATTTCGGAAGCAAACCCCAACCAGAGCGCTGTGTG...TTCCTCAGTGATAAACTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000234255.2
CDS-3UTR CAA 90 bp CTCCTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGTGGGGAAGGAGCAGTTaGGAAGGGCTTTCCACAAGT +
Preference number: 5 (lower is better)
Translates to: LLSFHSADSGWRGRRGHWWGRSS*EGLSTS
Trigger: ACTTGTGGAAAGCCCTTCCAAACTGCTCCTTCCCCA...CCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCTGAGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp CGGAGGGGCCACTGGGAGTTTATCACTGAGGAACAAGTTCCCTTAGGGAGGCCACGCTCTGGTTGGGGTTaGCTTCCGAAATCGCTCAGC +
Preference number: 5 (lower is better)
Translates to: RRGHWEFITEEQVPLGRPRSGWG*LPKSLS
Trigger: GCTGAGCGATTTCGGAAGCAAACCCCAACCAGAGCG...TGGCCTCCCTAAGGGAACTTGTTCCTCAGTGATAAACTCCCAGTGGCCCCTCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234255.2
CDS-3UTR CAA 90 bp AGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGTTTCACACAGCGCTCTGGTaGGGGTTTGCTTCCGAAATC +
Preference number: 5 (lower is better)
Translates to: SFHSADSGWRGRRGHWEFHTALW*GFASEI
Trigger: GATTTCGGAAGCAAACCCCAACCAGAGCGCTGTGTG...AAACTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp CTCCTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGTAGGCCGACAACTCTaGTTTCACAAAGGAAAGCAC +
Preference number: 5 (lower is better)
Translates to: LLSFHSADSGWRGRRGHWVGRQL*FHKGKH
Trigger: GTGCTTTCCTTTGTGAAACAAGAGTTGTCGGCCTAC...CCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCTGAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp GACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGTTTATCACTGAGGAACAAAGCAGGTTGATGATTTaGAGCAGGTTTGGGGGCACC +
Preference number: 5 (lower is better)
Translates to: DSGWRGRRGHWEFITEEQSRLMI*SRFGGT
Trigger: GGTGCCCCCAAACCTGCTCAAAATCATCAACCTGCT...TTGTTCCTCAGTGATAAACTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000234255.2
CDS-3UTR CAA 90 bp CTCCTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGGAAAGCCCAGCAGGTaGATGATTTTGAGCAGGTTT +
Preference number: 5 (lower is better)
Translates to: LLSFHSADSGWRGRRGHWGKPSR*MILSRF
Trigger: AAACCTGCTCAAAATCATCAACCTGCTGGGCTTTCC...CCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCTGAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp AGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGTTTTCATCCAAGCCCCCTTaGTTGTCACTGCCGTCCAAA +
Preference number: 5 (lower is better)
Translates to: SFHSADSGWRGRRGHWEFSSKPP*LSLPSK
Trigger: TTTGGACGGCAGTGACAACAAAGGGGGCTTGGATGA...AAACTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp CGGAGGGGCCACTGGGAGTTTATCACTGAGGAACAAGTTCCCTTAGGGAGGCCATCATCCAAGCCCCCTTaGTTGTCACTGCCGTCCAAA +
Preference number: 5 (lower is better)
Translates to: RRGHWEFITEEQVPLGRPSSKPP*LSLPSK
Trigger: TTTGGACGGCAGTGACAACAAAGGGGGCTTGGATGA...TGGCCTCCCTAAGGGAACTTGTTCCTCAGTGATAAACTCCCAGTGGCCCCTCCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000234255.2
CDS-3UTR CAA 90 bp ATCTTTAGTATGTCAGTGACACCAGGAAACCCATCCCTGGCCCAGGTGGTCTCCCGCTCTGGTTGGGGTTaGCTTCCGAAATCGCTCAGC +
Preference number: 5 (lower is better)
Translates to: IFSMSVTPGNPSLAQVVSRSGWG*LPKSLS
Trigger: GCTGAGCGATTTCGGAAGCAAACCCCAACCAGAGCG...GGAGACCACCTGGGCCAGGGATGGGTTTCCTGGTGTCACTGACATACTAAAGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp AGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGTTTCACTTCATGGCAAGCTaGACTCATCCTCTGCAGGTT +
Preference number: 5 (lower is better)
Translates to: SFHSADSGWRGRRGHWEFHFMAS*THPLQV
Trigger: AACCTGCAGAGGATGAGTCAAGCTTGCCATGAAGTG...AAACTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS CCA 90 bp TTCAGTCTGCTTAAGGACTCCTCGGTCACCCCTTCGGCCACAACGTaGTTATCATTTGCAGCATCAGAAGCCAAGGGCTCTTCCGTCAGC +
Preference number: 5 (lower is better)
Translates to: FSLLKDSSVTPSATT*LSFAASEAKGSSVS
Trigger: GCTGACGGAAGAGCCCTTGGCTTCTGATGCTGCAAATGATAACCACGTTGTGGCCGAAGGGGTGACCGAGGAGTCCTTAAGCAGACTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
ENSMUST00000234974.2
CDS-3UTR CAA 90 bp GACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGTTTATCACTGAGGAACAAGGAAAGCCCAGCAGGTaGATGATTTTGAGCAGGTTT +
Preference number: 5 (lower is better)
Translates to: DSGWRGRRGHWEFITEEQGKPSR*MILSRF
Trigger: AAACCTGCTCAAAATCATCAACCTGCTGGGCTTTCC...TTGTTCCTCAGTGATAAACTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000234255.2
CDS-3UTR CAA 90 bp ATAGGTGCTGCGTGGCTAGGACTGGCAGCAGGGACATGCTGTGGACTTATCTTCTCATCCAAGCCCCCTTaGTTGTCACTGCCGTCCAAA +
Preference number: 5 (lower is better)
Translates to: IGAAWLGLAAGTCCGLIFSSKPP*LSLPSK
Trigger: TTTGGACGGCAGTGACAACAAAGGGGGCTTGGATGA...GAAGATAAGTCCACAGCATGTCCCTGCTGCCAGTCCTAGCCACGCAGCACCTAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp GTCAGTGACACCAGGAAACCCATCCCTGGCCCAGGTGGTCTCCAGAAGAAAAGCCACTTCATGGCAAGCTaGACTCATCCTCTGCAGGTT +
Preference number: 5 (lower is better)
Translates to: VSDTRKPIPGPGGLQKKSHFMAS*THPLQV
Trigger: AACCTGCAGAGGATGAGTCAAGCTTGCCATGAAGTG...GCTTTTCTTCTGGAGACCACCTGGGCCAGGGATGGGTTTCCTGGTGTCACTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp AGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGTTTTCCCTGAAGCCGTTGTaGAGAAGCATATTGATGCCA +
Preference number: 5 (lower is better)
Translates to: SFHSADSGWRGRRGHWEFSLKPL*RSILMP
Trigger: TGGCATCAATATGCTTCTCAACAACGGCTTCAGGGA...AAACTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp AGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGTTTTTCTTTAAGAACAAGTaGTGCCCCATCCACATCACC +
Preference number: 5 (lower is better)
Translates to: SFHSADSGWRGRRGHWEFFFKNK*CPIHIT
Trigger: GGTGATGTGGATGGGGCACAACTTGTTCTTAAAGAA...AAACTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp TTCAAGAGAGTTTTCTCCTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACCGCTCTGGTTGGGGTTaGCTTCCGAAATCGCTCAGC +
Preference number: 5 (lower is better)
Translates to: FKRVFSSAFIVLTLGGGDRSGWG*LPKSLS
Trigger: GCTGAGCGATTTCGGAAGCAAACCCCAACCAGAGCG...GTCCCCTCCACCCAGAGTCAGCACTATGAAAGCTGAGGAGAAAACTCTCTTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp AACCCATCCCTGGCCCAGGTGGTCTCCAGAAGAAAAGCTGATCTTCAAGAGAGTCACACAGCGCTCTGGTaGGGGTTTGCTTCCGAAATC +
Preference number: 5 (lower is better)
Translates to: NPSLAQVVSRRKADLQESHTALW*GFASEI
Trigger: GATTTCGGAAGCAAACCCCAACCAGAGCGCTGTGTG...ACTCTCTTGAAGATCAGCTTTTCTTCTGGAGACCACCTGGGCCAGGGATGGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp ATCTTTAGTATGTCAGTGACACCAGGAAACCCATCCCTGGCCCAGGTGGTCTCCTGGGGAAGGAGCAGTTaGGAAGGGCTTTCCACAAGT +
Preference number: 5 (lower is better)
Translates to: IFSMSVTPGNPSLAQVVSWGRSS*EGLSTS
Trigger: ACTTGTGGAAAGCCCTTCCAAACTGCTCCTTCCCCA...GGAGACCACCTGGGCCAGGGATGGGTTTCCTGGTGTCACTGACATACTAAAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp TTTATCACTGAGGAACAAGTTCCCTTAGGGAGGCCAGAGCAGCGTGGATGCGGATGGGGAAGGAGCAGTTaGGAAGGGCTTTCCACAAGT +
Preference number: 5 (lower is better)
Translates to: FITEEQVPLGRPEQRGCGWGRSS*EGLSTS
Trigger: ACTTGTGGAAAGCCCTTCCAAACTGCTCCTTCCCCA...TCCGCATCCACGCTGCTCTGGCCTCCCTAAGGGAACTTGTTCCTCAGTGATAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234255.2
CDS-3UTR CAA 90 bp GAGAGTTTTCTCCTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGCACTTCATGGCAAGCTaGACTCATCCTCTGCAGGTT +
Preference number: 5 (lower is better)
Translates to: ESFLLSFHSADSGWRGRRHFMAS*THPLQV
Trigger: AACCTGCAGAGGATGAGTCAAGCTTGCCATGAAGTG...CCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCTGAGGAGAAAACTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp AGTATGTCAGTGACACCAGGAAACCCATCCCTGGCCCAGGTGGTCTCCAGAAGAGTAGGCCGACAACTCTaGTTTCACAAAGGAAAGCAC +
Preference number: 5 (lower is better)
Translates to: SMSVTPGNPSLAQVVSRRVGRQL*FHKGKH
Trigger: GTGCTTTCCTTTGTGAAACAAGAGTTGTCGGCCTAC...TCTTCTGGAGACCACCTGGGCCAGGGATGGGTTTCCTGGTGTCACTGACATACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp CTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGGAATCAAATGCATCCTaGAAGTTGAGTTCAATCATG +
Preference number: 5 (lower is better)
Translates to: LSFHSADSGWRGRRGHWEESNAS*KLSSIM
Trigger: CATGATTGAACTCAACTTCAAGGATGCATTTGATTC...CTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp TTTAGTATGTCAGTGACACCAGGAAACCCATCCCTGGCCCAGGTGGTCTCCAGACACTTCATGGCAAGCTaGACTCATCCTCTGCAGGTT +
Preference number: 5 (lower is better)
Translates to: FSMSVTPGNPSLAQVVSRHFMAS*THPLQV
Trigger: AACCTGCAGAGGATGAGTCAAGCTTGCCATGAAGTG...TCTGGAGACCACCTGGGCCAGGGATGGGTTTCCTGGTGTCACTGACATACTAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp AGTCAGCGACCTGACATGAGAGGGAATGGTGAAAGTCCAGCAACACACAGCCCTTTGTTGAGAAGCATATaGATGCCAGCCAAGGCCAGC +
Preference number: 5 (lower is better)
Translates to: SQRPDMRGNGESPATHSPLLRSI*MPAKAS
Trigger: GCTGGCCTTGGCTGGCATCAATATGCTTCTCAACAA...AGGGCTGTGTGTTGCTGGACTTTCACCATTCCCTCTCATGTCAGGTCGCTGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp CCAGGAAACCCATCCCTGGCCCAGGTGGTCTCCAGAAGAAAAGCTGATCTTCAAGTAGGCCGACAACTCTaGTTTCACAAAGGAAAGCAC +
Preference number: 5 (lower is better)
Translates to: PGNPSLAQVVSRRKADLQVGRQL*FHKGKH
Trigger: GTGCTTTCCTTTGTGAAACAAGAGTTGTCGGCCTAC...TTGAAGATCAGCTTTTCTTCTGGAGACCACCTGGGCCAGGGATGGGTTTCCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp CCAGGAAACCCATCCCTGGCCCAGGTGGTCTCCAGAAGAAAAGCTGATCTTCAACAACGTGGTTATCATTaGCAGCATCAGAAGCCAAGG +
Preference number: 5 (lower is better)
Translates to: PGNPSLAQVVSRRKADLQQRGYH*QHQKPR
Trigger: CCTTGGCTTCTGATGCTGCAAATGATAACCACGTTG...TTGAAGATCAGCTTTTCTTCTGGAGACCACCTGGGCCAGGGATGGGTTTCCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp TTCAAGAGAGTTTTCTCCTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACAGCAGGTTGATGATTTaGAGCAGGTTTGGGGGCACC +
Preference number: 5 (lower is better)
Translates to: FKRVFSSAFIVLTLGGGDSRLMI*SRFGGT
Trigger: GGTGCCCCCAAACCTGCTCAAAATCATCAACCTGCT...GTCCCCTCCACCCAGAGTCAGCACTATGAAAGCTGAGGAGAAAACTCTCTTGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp GAGAGTTTTCTCCTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGTTCTTTAAGAACAAGTaGTGCCCCATCCACATCACC +
Preference number: 5 (lower is better)
Translates to: ESFLLSFHSADSGWRGRRFFKNK*CPIHIT
Trigger: GGTGATGTGGATGGGGCACAACTTGTTCTTAAAGAA...CCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCTGAGGAGAAAACTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp AGTCAGCGACCTGACATGAGAGGGAATGGTGAAAGTCCAGCAACACACAGCCCTGACTCCCTGAAGCCGTaGTTGAGAAGCATATTGATG +
Preference number: 5 (lower is better)
Translates to: SQRPDMRGNGESPATHSPDSLKP*LRSILM
Trigger: CATCAATATGCTTCTCAACAACGGCTTCAGGGAGTC...AGGGCTGTGTGTTGCTGGACTTTCACCATTCCCTCTCATGTCAGGTCGCTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp CAACCCAACCCTAAAGGGGTTGTCACCCACAGCTTGAGGACTGCTGTGTTAAAGCAACGTGGTTATCATTaGCAGCATCAGAAGCCAAGG +
Preference number: 5 (lower is better)
Translates to: QPNPKGVVTHSLRTAVLKQRGYH*QHQKPR
Trigger: CCTTGGCTTCTGATGCTGCAAATGATAACCACGTTG...CTTTAACACAGCAGTCCTCAAGCTGTGGGTGACAACCCCTTTAGGGTTGGGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp AGCCAGCTCCAGAGCAGTGTGGAAGGAAGTCAAGGCACTGTTGATTTGACACTCGGAAAGCCCAGCAGGTaGATGATTTTGAGCAGGTTT +
Preference number: 5 (lower is better)
Translates to: SQLQSSVEGSQGTVDLTLGKPSR*MILSRF
Trigger: AAACCTGCTCAAAATCATCAACCTGCTGGGCTTTCC...GAGTGTCAAATCAACAGTGCCTTGACTTCCTTCCACACTGCTCTGGAGCTGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234974.2
CDS-3UTR CAA 90 bp AGCTTTCATAGTGCTGACTCTGGGTGGAGGGGACGGAGGGGCCACTGGGAGTTTGAATCAAATGCATCCTaGAAGTTGAGTTCAATCATG +
Preference number: 5 (lower is better)
Translates to: SFHSADSGWRGRRGHWEFESNAS*KLSSIM
Trigger: CATGATTGAACTCAACTTCAAGGATGCATTTGATTC...AAACTCCCAGTGGCCCCTCCGTCCCCTCCACCCAGAGTCAGCACTATGAAAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp CTGATCTTCAAGAGAGTTTTCTCCTCAGCTTTCATAGTGCTGACTCTGGGTGGACACACAGCGCTCTGGTaGGGGTTTGCTTCCGAAATC +
Preference number: 5 (lower is better)
Translates to: LIFKRVFSSAFIVLTLGGHTALW*GFASEI
Trigger: GATTTCGGAAGCAAACCCCAACCAGAGCGCTGTGTG...TCCACCCAGAGTCAGCACTATGAAAGCTGAGGAGAAAACTCTCTTGAAGATCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp CTGTGGACTTATCTTCTCAGCTCCTGTTTGGTCGGCTCCATTTTGAGAGCTTTTAGCAGGTTGATGATTTaGAGCAGGTTTGGGGGCACC +
Preference number: 5 (lower is better)
Translates to: LWTYLLSSCLVGSILRAFSRLMI*SRFGGT
Trigger: GGTGCCCCCAAACCTGCTCAAAATCATCAACCTGCT...AAAAGCTCTCAAAATGGAGCCGACCAAACAGGAGCTGAGAAGATAAGTCCACAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp CCATCCCTGGCCCAGGTGGTCTCCAGAAGAAAAGCTGATCTTCAAGAGAGTTTTGGAAAGCCCAGCAGGTaGATGATTTTGAGCAGGTTT +
Preference number: 5 (lower is better)
Translates to: PSLAQVVSRRKADLQESFGKPSR*MILSRF
Trigger: AAACCTGCTCAAAATCATCAACCTGCTGGGCTTTCC...AAAACTCTCTTGAAGATCAGCTTTTCTTCTGGAGACCACCTGGGCCAGGGATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp GTCAGTGACACCAGGAAACCCATCCCTGGCCCAGGTGGTCTCCAGAAGAAAAGCGAATCAAATGCATCCTaGAAGTTGAGTTCAATCATG +
Preference number: 5 (lower is better)
Translates to: VSDTRKPIPGPGGLQKKSESNAS*KLSSIM
Trigger: CATGATTGAACTCAACTTCAAGGATGCATTTGATTC...GCTTTTCTTCTGGAGACCACCTGGGCCAGGGATGGGTTTCCTGGTGTCACTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp AACCCATCCCTGGCCCAGGTGGTCTCCAGAAGAAAAGCTGATCTTCAAGAGAGTTTCTTTAAGAACAAGTaGTGCCCCATCCACATCACC +
Preference number: 5 (lower is better)
Translates to: NPSLAQVVSRRKADLQESFFKNK*CPIHIT
Trigger: GGTGATGTGGATGGGGCACAACTTGTTCTTAAAGAA...ACTCTCTTGAAGATCAGCTTTTCTTCTGGAGACCACCTGGGCCAGGGATGGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp CTGATCTTCAAGAGAGTTTTCTCCTCAGCTTTCATAGTGCTGACTCTGGGTGGATGGGGAAGGAGCAGTTaGGAAGGGCTTTCCACAAGT +
Preference number: 5 (lower is better)
Translates to: LIFKRVFSSAFIVLTLGGWGRSS*EGLSTS
Trigger: ACTTGTGGAAAGCCCTTCCAAACTGCTCCTTCCCCA...TCCACCCAGAGTCAGCACTATGAAAGCTGAGGAGAAAACTCTCTTGAAGATCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp ATCTTCAAGAGAGTTTTCTCCTCAGCTTTCATAGTGCTGACTCTGGGTGGAGGGCAACGTGGTTATCATTaGCAGCATCAGAAGCCAAGG +
Preference number: 5 (lower is better)
Translates to: IFKRVFSSAFIVLTLGGGQRGYH*QHQKPR
Trigger: CCTTGGCTTCTGATGCTGCAAATGATAACCACGTTG...CCCTCCACCCAGAGTCAGCACTATGAAAGCTGAGGAGAAAACTCTCTTGAAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp CAGGTCGGGCATTGCTCTCGTTATGGACATCTTTATTACTCCATAGCTACATGTTCATCCAAGCCCCCTTaGTTGTCACTGCCGTCCAAA +
Preference number: 5 (lower is better)
Translates to: QVGHCSRYGHLYYSIATCSSKPP*LSLPSK
Trigger: TTTGGACGGCAGTGACAACAAAGGGGGCTTGGATGA...ACATGTAGCTATGGAGTAATAAAGATGTCCATAACGAGAGCAATGCCCGACCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp AACCCATCCCTGGCCCAGGTGGTCTCCAGAAGAAAAGCTGATCTTCAAGAGAGTAATGCATCCTTGAAGTaGAGTTCAATCATGCTGCAC +
Preference number: 5 (lower is better)
Translates to: NPSLAQVVSRRKADLQESNASLK*SSIMLH
Trigger: GTGCAGCATGATTGAACTCAACTTCAAGGATGCATT...ACTCTCTTGAAGATCAGCTTTTCTTCTGGAGACCACCTGGGCCAGGGATGGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS GCA 90 bp CTCTCACACAGCTTCTCTGTAGTCTTTAAGTCATCGCACGCCAACTaGATTTTCTCCTCCTCGAATGTCATCATGGCGTTCAAAAAGCTG +
Preference number: 5 (lower is better)
Translates to: LSHSFSVVFKSSHAN*IFSSSNVIMAFKKL
Trigger: CAGCTTTTTGAACGCCATGATGACATTCGAGGAGGAGAAAATGCAGTTGGCGTGCGATGACTTAAAGACTACAGAGAAGCTGTGTGAGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
ENSMUST00000234974.2
CDS-3UTR CAA 90 bp CTGTGGACTTATCTTCTCAGCTCCTGTTTGGTCGGCTCCATTTTGAGAGCTTTTGTAGGCCGACAACTCTaGTTTCACAAAGGAAAGCAC +
Preference number: 5 (lower is better)
Translates to: LWTYLLSSCLVGSILRAFVGRQL*FHKGKH
Trigger: GTGCTTTCCTTTGTGAAACAAGAGTTGTCGGCCTAC...AAAAGCTCTCAAAATGGAGCCGACCAAACAGGAGCTGAGAAGATAAGTCCACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp CTCGAAGGAATCAAATGCATCCTTGAAGTTGAGTTCAATCATGCTGCACCAGCCGTAGGCCGACAACTCTaGTTTCACAAAGGAAAGCAC +
Preference number: 5 (lower is better)
Translates to: LEGIKCILEVEFNHAAPAVGRQL*FHKGKH
Trigger: GTGCTTTCCTTTGTGAAACAAGAGTTGTCGGCCTAC...GGCTGGTGCAGCATGATTGAACTCAACTTCAAGGATGCATTTGATTCCTTCGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234974.2
CDS-3UTR CAA 90 bp GGAATCAAATGCATCCTTGAAGTTGAGTTCAATCATGCTGCACCAGCCAATTTCAGCAGGTTGATGATTTaGAGCAGGTTTGGGGGCACC +
Preference number: 5 (lower is better)
Translates to: GIKCILEVEFNHAAPANFSRLMI*SRFGGT
Trigger: GGTGCCCCCAAACCTGCTCAAAATCATCAACCTGCT...GAAATTGGCTGGTGCAGCATGATTGAACTCAACTTCAAGGATGCATTTGATTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000234974.2
CDS-3UTR CAA 90 bp CAGGTCGGGCATTGCTCTCGTTATGGACATCTTTATTACTCCATAGCTACATGTCAACGTGGTTATCATTaGCAGCATCAGAAGCCAAGG +
Preference number: 5 (lower is better)
Translates to: QVGHCSRYGHLYYSIATCQRGYH*QHQKPR
Trigger: CCTTGGCTTCTGATGCTGCAAATGATAACCACGTTG...ACATGTAGCTATGGAGTAATAAAGATGTCCATAACGAGAGCAATGCCCGACCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp GGAATCAAATGCATCCTTGAAGTTGAGTTCAATCATGCTGCACCAGCCAATTTCCAACGTGGTTATCATTaGCAGCATCAGAAGCCAAGG +
Preference number: 5 (lower is better)
Translates to: GIKCILEVEFNHAAPANFQRGYH*QHQKPR
Trigger: CCTTGGCTTCTGATGCTGCAAATGATAACCACGTTG...GAAATTGGCTGGTGCAGCATGATTGAACTCAACTTCAAGGATGCATTTGATTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234974.2
CDS-3UTR CAA 90 bp CAGGTCGGGCATTGCTCTCGTTATGGACATCTTTATTACTCCATAGCTACATGTAATGCATCCTTGAAGTaGAGTTCAATCATGCTGCAC +
Preference number: 5 (lower is better)
Translates to: QVGHCSRYGHLYYSIATCNASLK*SSIMLH
Trigger: GTGCAGCATGATTGAACTCAACTTCAAGGATGCATT...ACATGTAGCTATGGAGTAATAAAGATGTCCATAACGAGAGCAATGCCCGACCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp CGGGCATTGCTCTCGTTATGGACATCTTTATTACTCCATAGCTACATGTTTAAAGGAAAGCCCAGCAGGTaGATGATTTTGAGCAGGTTT +
Preference number: 5 (lower is better)
Translates to: RALLSLWTSLLLHSYMFKGKPSR*MILSRF
Trigger: AAACCTGCTCAAAATCATCAACCTGCTGGGCTTTCC...TTTAAACATGTAGCTATGGAGTAATAAAGATGTCCATAACGAGAGCAATGCCCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp GAAGAAAAGCTGATCTTCAAGAGAGTTTTCTCCTCAGCTTTCATAGTGCTGACTAATGCATCCTTGAAGTaGAGTTCAATCATGCTGCAC +
Preference number: 5 (lower is better)
Translates to: EEKLIFKRVFSSAFIVLTNASLK*SSIMLH
Trigger: GTGCAGCATGATTGAACTCAACTTCAAGGATGCATT...AGTCAGCACTATGAAAGCTGAGGAGAAAACTCTCTTGAAGATCAGCTTTTCTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp CGGGCATTGCTCTCGTTATGGACATCTTTATTACTCCATAGCTACATGTTTAAATTCTTTAAGAACAAGTaGTGCCCCATCCACATCACC +
Preference number: 5 (lower is better)
Translates to: RALLSLWTSLLLHSYMFKFFKNK*CPIHIT
Trigger: GGTGATGTGGATGGGGCACAACTTGTTCTTAAAGAA...TTTAAACATGTAGCTATGGAGTAATAAAGATGTCCATAACGAGAGCAATGCCCG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp CGGGCATTGCTCTCGTTATGGACATCTTTATTACTCCATAGCTACATGTTTAAAAATGCATCCTTGAAGTaGAGTTCAATCATGCTGCAC +
Preference number: 5 (lower is better)
Translates to: RALLSLWTSLLLHSYMFKNASLK*SSIMLH
Trigger: GTGCAGCATGATTGAACTCAACTTCAAGGATGCATT...TTTAAACATGTAGCTATGGAGTAATAAAGATGTCCATAACGAGAGCAATGCCCG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234966.2
CDS-3UTR CAA 90 bp CGGGCATTGCTCTCGTTATGGACATCTTTATTACTCCATAGCTACATGTTTAAAGAATCAAATGCATCCTaGAAGTTGAGTTCAATCATG +
Preference number: 5 (lower is better)
Translates to: RALLSLWTSLLLHSYMFKESNAS*KLSSIM
Trigger: CATGATTGAACTCAACTTCAAGGATGCATTTGATTC...TTTAAACATGTAGCTATGGAGTAATAAAGATGTCCATAACGAGAGCAATGCCCG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234966.2
CDS GCA 72 bp AGCATATTGATGCCAGCCAAGGCCAGCTCCGCGTCCTaGAGGGGCGCCGCTGCGGCGTCCGGGTCGCCGTCC +
Preference number: 6 (lower is better)
Translates to: SILMPAKASSAS*RGAAAASGSPS
Trigger: GGACGGCGACCCGGACGCCGCAGCGGCGCCCCTGCAGGACGCGGAGCTGGCCTTGGCTGGCATCAATATGCT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
CDS CAA 72 bp CCTCGGTCACCCCTTCGGCCACAACGTGGTTATCATTaGCAGCATCAGAAGCCAAGGGCTCTTCCGTCAGCT +
Preference number: 6 (lower is better)
Translates to: PRSPLRPQRGYH*QHQKPRALPSA
Trigger: AGCTGACGGAAGAGCCCTTGGCTTCTGATGCTGCAAATGATAACCACGTTGTGGCCGAAGGGGTGACCGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
ENSMUST00000234974.2
CDS CAA 90 bp AGGCCCTGTAGGCGGTCTCCAGGAAAGCCCAGCAGGTTGATGATTTaGAGCAGGTTTGGGGGCACCATGGATATGCAAAGGTGGAAAAGG +
Preference number: 6 (lower is better)
Translates to: RPCRRSPGKPSRLMI*SRFGGTMDMQRWKR
Trigger: CCTTTTCCACCTTTGCATATCCATGGTGCCCCCAAACCTGCTCAAAATCATCAACCTGCTGGGCTTTCCTGGAGACCGCCTACAGGGCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
ENSMUST00000234974.2
CDS CCA 72 bp CTTAAGGACTCCTCGGTCACCCCTTCGGCCACAACGTaGTTATCATTTGCAGCATCAGAAGCCAAGGGCTCT +
Preference number: 6 (lower is better)
Translates to: LKDSSVTPSATT*LSFAASEAKGS
Trigger: AGAGCCCTTGGCTTCTGATGCTGCAAATGATAACCACGTTGTGGCCGAAGGGGTGACCGAGGAGTCCTTAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
ENSMUST00000234974.2
CDS CAA 90 bp TTAAGGACTCCTCGGTCACCCCTTCGGCCACAACGTGGTTATCATTaGCAGCATCAGAAGCCAAGGGCTCTTCCGTCAGCTTCTTCTGAT +
Preference number: 6 (lower is better)
Translates to: LRTPRSPLRPQRGYH*QHQKPRALPSASSD
Trigger: ATCAGAAGAAGCTGACGGAAGAGCCCTTGGCTTCTGATGCTGCAAATGATAACCACGTTGTGGCCGAAGGGGTGACCGAGGAGTCCTTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
ENSMUST00000234974.2
CDS GCA 72 bp CAGAAAAATCCTCCTTTGCCTGAAGAAGTAGAGTTCTaGCTCTTCCCACAGTCTCTGCGCTGTCCAGTAGGA +
Preference number: 6 (lower is better)
Translates to: QKNPPLPEEVEF*LFPQSLRCPVG
Trigger: TCCTACTGGACAGCGCAGAGACTGTGGGAAGAGGCAGAACTCTACTTCTTCAGGCAAAGGAGGATTTTTCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234966.2
CDS TCA 72 bp CCGTCAGCTTCTTCTGATACAGTTCCTGAAGGGCGTTaGTGTCCACATAGCACTTACTGTAAATCTTCCAGG +
Preference number: 6 (lower is better)
Translates to: PSASSDTVPEGR*CPHSTYCKSSR
Trigger: CCTGGAAGATTTACAGTAAGTGCTATGTGGACATCAACGCCCTTCAGGAACTGTATCAGAAGAAGCTGACGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
ENSMUST00000234974.2
CDS GCA 72 bp AGCTTCTCTGTAGTCTTTAAGTCATCGCACGCCAACTaGATTTTCTCCTCCTCGAATGTCATCATGGCGTTC +
Preference number: 6 (lower is better)
Translates to: SFSVVFKSSHAN*IFSSSNVIMAF
Trigger: GAACGCCATGATGACATTCGAGGAGGAGAAAATGCAGTTGGCGTGCGATGACTTAAAGACTACAGAGAAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
ENSMUST00000234974.2
CDS CAA 72 bp AAGGATCCACCCACCTTTTATGTAGGCCGACAACTCTaGTTTCACAAAGGAAAGCACTGCCAGGTAAACCTG +
Preference number: 6 (lower is better)
Translates to: KDPPTFYVGRQL*FHKGKHCQVNL
Trigger: CAGGTTTACCTGGCAGTGCTTTCCTTTGTGAAACAAGAGTTGTCGGCCTACATAAAAGGTGGGTGGATCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000025294.9
ENSMUST00000169401.8
ENSMUST00000234255.2
ENSMUST00000234966.2
ENSMUST00000234974.2
CDS TCA 72 bp TCTCCTCCTCGAATGTCATCATGGCGTTCAAAAAGCTaGCGAAGCTGGCTCCAAAACTCATTAGTGGACTAT +
Preference number: 6 (lower is better)
Translates to: SPPRMSSWRSKS*RSWLQNSLVDY
Trigger: ATAGTCCACTAATGAGTTTTGGAGCCAGCTTCGTCAGCTTTTTGAACGCCATGATGACATTCGAGGAGGAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000234966.2
CDS GCA 72 bp CAGAAAAATCCTCCTTTGCCTGAAGAAGTAGAGTTCTaGCTCTTCCCACAGTCTGTGAACATAAGAACAACA +
Preference number: 6 (lower is better)
Translates to: QKNPPLPEEVEF*LFPQSVNIRTT
Trigger: TGTTGTTCTTATGTTCACAGACTGTGGGAAGAGGCAGAACTCTACTTCTTCAGGCAAAGGAGGATTTTTCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000234255.2