RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TTC36 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039438

Ensembl transcript IDs: ENSMUST00000044694.8

Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp GAGAGTCCCGGAAGTTTTATTGGGTCCTGGTTGGGTCAGGGTCCCCCTCTCCATCTCTGCACGAAGCTCTaGCGGGCGGCGCGACCCCGG +
Preference number: 4 (lower is better)
Translates to: ESPGSFIGSWLGQGPPLHLCTKL*RAARPR
Trigger: CCGGGGTCGCGCCGCCCGCCAGAGCTTCGTGCAGAG...ATGGAGAGGGGGACCCTGACCCAACCAGGACCCAATAAAACTTCCGGGACTCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS-3UTR GCA 90 bp CGGAAGTTTTATTGGGTCCTGGTTGGGTCAGGGTCCCCCTCTCCATCATTCGGCCTGGGCGCGCGCAGCTaGCCCATCATGTCGGCCAGC +
Preference number: 4 (lower is better)
Translates to: RKFYWVLVGSGSPSPSFGLGARS*PIMSAS
Trigger: GCTGGCCGACATGATGGGGCAGCTGCGCGCGCCCAG...GCCGAATGATGGAGAGGGGGACCCTGACCCAACCAGGACCCAATAAAACTTCCG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS-3UTR GCA 90 bp GAAGTTTTATTGGGTCCTGGTTGGGTCAGGGTCCCCCTCTCCATCATTCGGCCGCCTTCTCGAAGTCCCTaGGGGCGTCGTCGTCCCGGC +
Preference number: 4 (lower is better)
Translates to: EVLLGPGWVRVPLSIIRPPSRSP*GRRRPG
Trigger: GCCGGGACGACGACGCCCGCAGGGACTTCGAGAAGG...CGGCCGAATGATGGAGAGGGGGACCCTGACCCAACCAGGACCCAATAAAACTTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS-3UTR GCA 90 bp AAGTTTTATTGGGTCCTGGTTGGGTCAGGGTCCCCCTCTCCATCATTCGGCCGGCGGCCAGCATGCGGTTaGACAGCGCGGCGTACGGGT +
Preference number: 4 (lower is better)
Translates to: KFYWVLVGSGSPSPSFGRRPACG*TARRTG
Trigger: ACCCGTACGCCGCGCTGTGCAACCGCATGCTGGCCG...CCGGCCGAATGATGGAGAGGGGGACCCTGACCCAACCAGGACCCAATAAAACTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS-3UTR CCA 90 bp GTTTTATTGGGTCCTGGTTGGGTCAGGGTCCCCCTCTCCATCATTCGGCCGGCCTTGAGCAGCACTAGCTaGCGCCGTGCGAACGGGCTG +
Preference number: 4 (lower is better)
Translates to: VLLGPGWVRVPLSIIRPALSSTS*RRANGL
Trigger: CAGCCCGTTCGCACGGCGCCAGCTAGTGCTGCTCAA...GGCCGGCCGAATGATGGAGAGGGGGACCCTGACCCAACCAGGACCCAATAAAAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS-3UTR GCA 90 bp GTCCCGGAAGTTTTATTGGGTCCTGGTTGGGTCAGGGTCCCCCTCTCCATCATTGCCAGTAGCCCGCTCTaGACGAAGCTCTGGCGGGCG +
Preference number: 4 (lower is better)
Translates to: VPEVLLGPGWVRVPLSIIASSPL*TKLWRA
Trigger: CGCCCGCCAGAGCTTCGTGCAGAGCGGGCTACTGGC...AATGATGGAGAGGGGGACCCTGACCCAACCAGGACCCAATAAAACTTCCGGGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS-3UTR GCA 90 bp AGTCCCGGAAGTTTTATTGGGTCCTGGTTGGGTCAGGGTCCCCCTCTCCATCATGCCGCCCTCACTCCCTaGAACTCCAGGGCCTTGGAG +
Preference number: 4 (lower is better)
Translates to: SPGSFIGSWLGQGPPLHHAALTP*NSRALE
Trigger: CTCCAAGGCCCTGGAGTTGCAGGGAGTGAGGGCGGC...ATGATGGAGAGGGGGACCCTGACCCAACCAGGACCCAATAAAACTTCCGGGACT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS-3UTR GCA 90 bp CCCGGAAGTTTTATTGGGTCCTGGTTGGGTCAGGGTCCCCCTCTCCATCATTCGTCATGTCGGCCAGCATaGGGTTGCACAGCGCGGCGT +
Preference number: 4 (lower is better)
Translates to: PGSFIGSWLGQGPPLHHSSCRPA*GCTARR
Trigger: ACGCCGCGCTGTGCAACCGCATGCTGGCCGACATGA...CGAATGATGGAGAGGGGGACCCTGACCCAACCAGGACCCAATAAAACTTCCGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS-3UTR TCA 90 bp GGAAGTTTTATTGGGTCCTGGTTGGGTCAGGGTCCCCCTCTCCATCATTCGGCCAGGGGGTATCAGGGTTaGAGATGGCCTGCAACACTG +
Preference number: 4 (lower is better)
Translates to: GSFIGSWLGQGPPLHHSARGYQG*RWPATL
Trigger: CAGTGTTGCAGGCCATCTTCAACCCTGATACCCCCT...GGCCGAATGATGGAGAGGGGGACCCTGACCCAACCAGGACCCAATAAAACTTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS-3UTR GCA 90 bp CCCGGAAGTTTTATTGGGTCCTGGTTGGGTCAGGGTCCCCCTCTCCATCATTCGGCCAAACTTCTCCAGTaGTGTGTGGAGGTCTCCAGC +
Preference number: 4 (lower is better)
Translates to: PGSFIGSWLGQGPPLHHSAKLLQ*CVEVSS
Trigger: GCTGGAGACCTCCACACAGCACTGGAGAAGTTTGGC...CGAATGATGGAGAGGGGGACCCTGACCCAACCAGGACCCAATAAAACTTCCGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS-3UTR CCA 90 bp AGTCCCGGAAGTTTTATTGGGTCCTGGTTGGGTCAGGGTCCCCCTCTCCATCATTTCTCCAGTGCTGTGTaGAGGTCTCCAGCTTCTGCC +
Preference number: 4 (lower is better)
Translates to: SPGSFIGSWLGQGPPLHHFSSAV*RSPASA
Trigger: GGCAGAAGCTGGAGACCTCCACACAGCACTGGAGAA...ATGATGGAGAGGGGGACCCTGACCCAACCAGGACCCAATAAAACTTCCGGGACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS-3UTR TCA 90 bp AGTTTTATTGGGTCCTGGTTGGGTCAGGGTCCCCCTCTCCATCATTCGGCCGGCTGCTCCAACTGTGCTTaGGGGAAAACTCCATCTTCA +
Preference number: 4 (lower is better)
Translates to: SFIGSWLGQGPPLHHSAGCSNCA*GKTPSS
Trigger: TGAAGATGGAGTTTTCCCTCAAGCACAGTTGGAGCA...GCCGGCCGAATGATGGAGAGGGGGACCCTGACCCAACCAGGACCCAATAAAACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS-3UTR GCA 90 bp GAAGTTTTATTGGGTCCTGGTTGGGTCAGGGTCCCCCTCTCCATCATTCGGCCGGGAGTGCTCCAACTGTaGTTGAGGGAAAACTCCATC +
Preference number: 4 (lower is better)
Translates to: EVLLGPGWVRVPLSIIRPGVLQL*LRENSI
Trigger: GATGGAGTTTTCCCTCAAGCACAGTTGGAGCACTCC...CGGCCGAATGATGGAGAGGGGGACCCTGACCCAACCAGGACCCAATAAAACTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS-3UTR GCA 90 bp TCCCGGAAGTTTTATTGGGTCCTGGTTGGGTCAGGGTCCCCCTCTCCATCATTCTTCATCTCCCTCCTCTaGTTCTTCCAGGTCCAATCC +
Preference number: 4 (lower is better)
Translates to: SRKFYWVLVGSGSPSPSFFISLL*FFQVQS
Trigger: GGATTGGACCTGGAAGAAGCAGAGGAGGGAGATGAA...GAATGATGGAGAGGGGGACCCTGACCCAACCAGGACCCAATAAAACTTCCGGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS GCA 90 bp GCCGTGCGAACGGGCTGCCCAGTCGCGCAGCCTTCTCGAAGTCCCTaGGGGCGTCGTCGTCCCGGCCCTGAAATCTCGCCAGTAGCCCGC +
Preference number: 5 (lower is better)
Translates to: AVRTGCPVAQPSRSP*GRRRPGPEISPVAR
Trigger: GCGGGCTACTGGCGAGATTTCAGGGCCGGGACGACGACGCCCGCAGGGACTTCGAGAAGGCTGCGCGACTGGGCAGCCCGTTCGCACGGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS TCA 90 bp CGCGCAGCCTTCTCGAAGTCCCTGCGGGCGTCGTCGTCCCGGCCCTaGAATCTCGCCAGTAGCCCGCTCTGCACGAAGCTCTGGCGGGCG +
Preference number: 5 (lower is better)
Translates to: RAAFSKSLRASSSRP*NLASSPLCTKLWRA
Trigger: CGCCCGCCAGAGCTTCGTGCAGAGCGGGCTACTGGCGAGATTTCAGGGCCGGGACGACGACGCCCGCAGGGACTTCGAGAAGGCTGCGCG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS TCA 90 bp CCATCATGTCGGCCAGCATGCGGTTGCACAGCGCGGCGTACGGGTTaGGCAGCACTAGCTGGCGCCGTGCGAACGGGCTGCCCAGTCGCG +
Preference number: 5 (lower is better)
Translates to: PSCRPACGCTARRTG*AALAGAVRTGCPVA
Trigger: CGCGACTGGGCAGCCCGTTCGCACGGCGCCAGCTAGTGCTGCTCAACCCGTACGCCGCGCTGTGCAACCGCATGCTGGCCGACATGATGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS CCA 90 bp AGCATGCGGTTGCACAGCGCGGCGTACGGGTTGAGCAGCACTAGCTaGCGCCGTGCGAACGGGCTGCCCAGTCGCGCAGCCTTCTCGAAG +
Preference number: 5 (lower is better)
Translates to: SMRLHSAAYGLSSTS*RRANGLPSRAAFSK
Trigger: CTTCGAGAAGGCTGCGCGACTGGGCAGCCCGTTCGCACGGCGCCAGCTAGTGCTGCTCAACCCGTACGCCGCGCTGTGCAACCGCATGCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS-3UTR CAA 90 bp TTTTATTGGGTCCTGGTTGGGTCAGGGTCCCCCTCTCCATCATTCGGCCGGCCATCGGCCAGCATGCGGTaGCACAGCGCGGCGTACGGG +
Preference number: 5 (lower is better)
Translates to: FYWVLVGSGSPSPSFGRPSASMR*HSAAYG
Trigger: CCCGTACGCCGCGCTGTGCAACCGCATGCTGGCCGA...TGGCCGGCCGAATGATGGAGAGGGGGACCCTGACCCAACCAGGACCCAATAAAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS-3UTR CAA 90 bp CGAGAGTCCCGGAAGTTTTATTGGGTCCTGGTTGGGTCAGGGTCCCCCTCTCCACTGGAGCCGCCGGGCTaGGGCTCGGTTGTTGTAGGC +
Preference number: 5 (lower is better)
Translates to: RESRKFYWVLVGSGSPSPLEPPG*GSVVVG
Trigger: GCCTACAACAACCGAGCCCAAGCCCGGCGGCTCCAG...TGGAGAGGGGGACCCTGACCCAACCAGGACCCAATAAAACTTCCGGGACTCTCG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS-3UTR CAA 90 bp TTTTATTGGGTCCTGGTTGGGTCAGGGTCCCCCTCTCCATCATTCGGCCGGCCAAGCGCGGCGTACGGGTaGAGCAGCACTAGCTGGCGC +
Preference number: 5 (lower is better)
Translates to: FYWVLVGSGSPSPSFGRPSAAYG*SSTSWR
Trigger: GCGCCAGCTAGTGCTGCTCAACCCGTACGCCGCGCT...TGGCCGGCCGAATGATGGAGAGGGGGACCCTGACCCAACCAGGACCCAATAAAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS-3UTR CAA 90 bp TTTATTGGGTCCTGGTTGGGTCAGGGTCCCCCTCTCCATCATTCGGCCGGCCACTGCAACTCCAGGGCCTaGGAGTGCTCCAACTGTGCT +
Preference number: 5 (lower is better)
Translates to: FIGSWLGQGPPLHHSAGHCNSRA*ECSNCA
Trigger: AGCACAGTTGGAGCACTCCAAGGCCCTGGAGTTGCA...GTGGCCGGCCGAATGATGGAGAGGGGGACCCTGACCCAACCAGGACCCAATAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS CCA 90 bp TCAGGTAGCAGGCTAATGGCTTGGCCAAACTTCTCCAGTGCTGTGTaGAGGTCTCCAGCTTCTGCCGCCCTCACTCCCTGCAACTCCAGG +
Preference number: 5 (lower is better)
Translates to: SGSRLMAWPNFSSAV*RSPASAALTPCNSR
Trigger: CCTGGAGTTGCAGGGAGTGAGGGCGGCAGAAGCTGGAGACCTCCACACAGCACTGGAGAAGTTTGGCCAAGCCATTAGCCTGCTACCTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS-3UTR CAA 90 bp GTTTTATTGGGTCCTGGTTGGGTCAGGGTCCCCCTCTCCATCATTCGGCCGGCCAAGGGGGTATCAGGGTaGAAGATGGCCTGCAACACT +
Preference number: 5 (lower is better)
Translates to: VLLGPGWVRVPLSIIRPAKGVSG*KMACNT
Trigger: AGTGTTGCAGGCCATCTTCAACCCTGATACCCCCTT...GGCCGGCCGAATGATGGAGAGGGGGACCCTGACCCAACCAGGACCCAATAAAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS TCA 90 bp CTCACTCCCTGCAACTCCAGGGCCTTGGAGTGCTCCAACTGTGCTTaGGGGAAAACTCCATCTTCATCTCCCTCCTCTGCTTCTTCCAGG +
Preference number: 5 (lower is better)
Translates to: LTPCNSRALECSNCA*GKTPSSSPSSASSR
Trigger: CCTGGAAGAAGCAGAGGAGGGAGATGAAGATGGAGTTTTCCCTCAAGCACAGTTGGAGCACTCCAAGGCCCTGGAGTTGCAGGGAGTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS-3UTR CAA 90 bp CCCGGAAGTTTTATTGGGTCCTGGTTGGGTCAGGGTCCCCCTCTCCATCATTCGGTGCTCCAACTGTGCTaGAGGGAAAACTCCATCTTC +
Preference number: 5 (lower is better)
Translates to: PGSFIGSWLGQGPPLHHSVLQLC*RENSIF
Trigger: GAAGATGGAGTTTTCCCTCAAGCACAGTTGGAGCAC...CGAATGATGGAGAGGGGGACCCTGACCCAACCAGGACCCAATAAAACTTCCGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS TCA 72 bp CGGCCAGCATGCGGTTGCACAGCGCGGCGTACGGGTTaGGCAGCACTAGCTGGCGCCGTGCGAACGGGCTGC +
Preference number: 6 (lower is better)
Translates to: RPACGCTARRTG*AALAGAVRTGC
Trigger: GCAGCCCGTTCGCACGGCGCCAGCTAGTGCTGCTCAACCCGTACGCCGCGCTGTGCAACCGCATGCTGGCCG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS GCA 72 bp CAATGTCACCGCGCGCTCCAAGTCCTCCAGGGCGCCTaGTACATCCCCCTGGAGCCGCCGGGCTTGGGCTCG +
Preference number: 6 (lower is better)
Translates to: QCHRALQVLQGA*YIPLEPPGLGS
Trigger: CGAGCCCAAGCCCGGCGGCTCCAGGGGGATGTAGCAGGCGCCCTGGAGGACTTGGAGCGCGCGGTGACATTG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS CCA 72 bp TTGCACAGCGCGGCGTACGGGTTGAGCAGCACTAGCTaGCGCCGTGCGAACGGGCTGCCCAGTCGCGCAGCC +
Preference number: 6 (lower is better)
Translates to: LHSAAYGLSSTS*RRANGLPSRAA
Trigger: GGCTGCGCGACTGGGCAGCCCGTTCGCACGGCGCCAGCTAGTGCTGCTCAACCCGTACGCCGCGCTGTGCAA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS CAA 90 bp CCCATCATGTCGGCCAGCATGCGGTTGCACAGCGCGGCGTACGGGTaGAGCAGCACTAGCTGGCGCCGTGCGAACGGGCTGCCCAGTCGC +
Preference number: 6 (lower is better)
Translates to: PIMSASMRLHSAAYG*SSTSWRRANGLPSR
Trigger: GCGACTGGGCAGCCCGTTCGCACGGCGCCAGCTAGTGCTGCTCAACCCGTACGCCGCGCTGTGCAACCGCATGCTGGCCGACATGATGGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS CAA 90 bp TTGCTGGGCGCGCGCAGCTGCCCCATCATGTCGGCCAGCATGCGGTaGCACAGCGCGGCGTACGGGTTGAGCAGCACTAGCTGGCGCCGT +
Preference number: 6 (lower is better)
Translates to: LLGARSCPIMSASMR*HSAAYGLSSTSWRR
Trigger: ACGGCGCCAGCTAGTGCTGCTCAACCCGTACGCCGCGCTGTGCAACCGCATGCTGGCCGACATGATGGGGCAGCTGCGCGCGCCCAGCAA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS GCA 72 bp ACGGGCTGCCCAGTCGCGCAGCCTTCTCGAAGTCCCTaGGGGCGTCGTCGTCCCGGCCCTGAAATCTCGCCA +
Preference number: 6 (lower is better)
Translates to: TGCPVAQPSRSP*GRRRPGPEISP
Trigger: TGGCGAGATTTCAGGGCCGGGACGACGACGCCCGCAGGGACTTCGAGAAGGCTGCGCGACTGGGCAGCCCGT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS CAA 72 bp TCGGCCAGCATGCGGTTGCACAGCGCGGCGTACGGGTaGAGCAGCACTAGCTGGCGCCGTGCGAACGGGCTG +
Preference number: 6 (lower is better)
Translates to: SASMRLHSAAYG*SSTSWRRANGL
Trigger: CAGCCCGTTCGCACGGCGCCAGCTAGTGCTGCTCAACCCGTACGCCGCGCTGTGCAACCGCATGCTGGCCGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS CAA 72 bp GCGCGCAGCTGCCCCATCATGTCGGCCAGCATGCGGTaGCACAGCGCGGCGTACGGGTTGAGCAGCACTAGC +
Preference number: 6 (lower is better)
Translates to: ARSCPIMSASMR*HSAAYGLSSTS
Trigger: GCTAGTGCTGCTCAACCCGTACGCCGCGCTGTGCAACCGCATGCTGGCCGACATGATGGGGCAGCTGCGCGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS TCA 72 bp TTCTCGAAGTCCCTGCGGGCGTCGTCGTCCCGGCCCTaGAATCTCGCCAGTAGCCCGCTCTGCACGAAGCTC +
Preference number: 6 (lower is better)
Translates to: FSKSLRASSSRP*NLASSPLCTKL
Trigger: GAGCTTCGTGCAGAGCGGGCTACTGGCGAGATTTCAGGGCCGGGACGACGACGCCCGCAGGGACTTCGAGAA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS CCA 72 bp AGGCTAATGGCTTGGCCAAACTTCTCCAGTGCTGTGTaGAGGTCTCCAGCTTCTGCCGCCCTCACTCCCTGC +
Preference number: 6 (lower is better)
Translates to: RLMAWPNFSSAV*RSPASAALTPC
Trigger: GCAGGGAGTGAGGGCGGCAGAAGCTGGAGACCTCCACACAGCACTGGAGAAGTTTGGCCAAGCCATTAGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS CAA 90 bp CCTCACTCCCTGCAACTCCAGGGCCTTGGAGTGCTCCAACTGTGCTaGAGGGAAAACTCCATCTTCATCTCCCTCCTCTGCTTCTTCCAG +
Preference number: 6 (lower is better)
Translates to: PHSLQLQGLGVLQLC*RENSIFISLLCFFQ
Trigger: CTGGAAGAAGCAGAGGAGGGAGATGAAGATGGAGTTTTCCCTCAAGCACAGTTGGAGCACTCCAAGGCCCTGGAGTTGCAGGGAGTGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8
CDS TCA 72 bp TGCAACTCCAGGGCCTTGGAGTGCTCCAACTGTGCTTaGGGGAAAACTCCATCTTCATCTCCCTCCTCTGCT +
Preference number: 6 (lower is better)
Translates to: CNSRALECSNCA*GKTPSSSPSSA
Trigger: AGCAGAGGAGGGAGATGAAGATGGAGTTTTCCCTCAAGCACAGTTGGAGCACTCCAAGGCCCTGGAGTTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044694.8