Pregenerated sensors for TTC32 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000066637Ensembl transcript IDs: ENSMUST00000085741.2, ENSMUST00000219470.2, ENSMUST00000219488.2
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCCGGCTCCTGCGTCCGGTCCCATTCTCACTACAGTGCTCTGCTGTaGTCTGTAGGGCCCAGCAAATGCCTAAAACCATTCATGAACGCT | + |
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Preference number: 1 (lower is better) Translates to: SGSCVRSHSHYSALL*SVGPSKCLKPFMNA Trigger: AGCGTTCATGAATGGTTTTAGGCATTTGCTGGGCCCTACAGACCACAGCAGAGCACTGTAGTGAGAATGGGACCGGACGCAGGAGCCGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219470.2 |
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| 3UTR GCA 90 bp | TACAACCCTTTAATCCAGGCTTCTAAAAGCTTCACTTCCGGCTCCTaGGTCCGGTCCCATTCTCACTACAGTGCTCTGCTGTGGTCTGTA | + |
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Preference number: 1 (lower is better) Translates to: YNPLIQASKSFTSGS*VRSHSHYSALLWSV Trigger: TACAGACCACAGCAGAGCACTGTAGTGAGAATGGGACCGGACGCAGGAGCCGGAAGTGAAGCTTTTAGAAGCCTGGATTAAAGGGTTGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219470.2 |
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| 3UTR CCA 90 bp | GTGTCCAAATGCCCTTCTTCTTCTAAAGACTCTGGTCATAAGGGGTaGTGTTATATCAGTCGTTGGCTGCATGAACAGATTGTGAAAGCT | + |
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Preference number: 1 (lower is better) Translates to: VSKCPSSSKDSGHKG*CYISRWLHEQIVKA Trigger: AGCTTTCACAATCTGTTCATGCAGCCAACGACTGATATAACACCACCCCTTATGACCAGAGTCTTTAGAAGAAGAAGGGCATTTGGACAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219488.2 |
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| 3UTR-3UTR GCA 90 bp | TTCACTTCCGGCTCCTGCGTCCGGTCCCATTCTCACTACAGTGCTCTGCTGTGGGTAGGGCCCAGCAAATaGCTAAAACCATTCATGAAC | + |
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Preference number: 2 (lower is better) Translates to: FTSGSCVRSHSHYSALLWVGPSK*LKPFMN Trigger: GTTCATGAATGGTTTTAGGCATTTGCTGGGCCCTAC...CCACAGCAGAGCACTGTAGTGAGAATGGGACCGGACGCAGGAGCCGGAAGTGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219470.2 |
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| 3UTR-3UTR GCA 90 bp | GGCTCCTGCGTCCGGTCCCATTCTCACTACAGTGCTCTGCTGTGGTCTGTAGGGTTAGAGCCAATCAAATaGAGATTTAAGGATCTTGAG | + |
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Preference number: 2 (lower is better) Translates to: GSCVRSHSHYSALLWSVGLEPIK*RFKDLE Trigger: CTCAAGATCCTTAAATCTGCATTTGATTGGCTCTAA...CCCTACAGACCACAGCAGAGCACTGTAGTGAGAATGGGACCGGACGCAGGAGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219470.2 |
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| 3UTR-3UTR TCA 90 bp | GACATACCTCACACAAGTCTCACAAGCGTCCTTTCTTGTGTCTGTGTCCAAATGCAGTCGTTGGCTGCATaGACAGATTGTGAAAGCTGG | + |
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Preference number: 2 (lower is better) Translates to: DIPHTSLTSVLSCVCVQMQSLAA*TDCESW Trigger: CCAGCTTTCACAATCTGTTCATGCAGCCAACGACTG...CATTTGGACACAGACACAAGAAAGGACGCTTGTGAGACTTGTGTGAGGTATGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219488.2 |
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| 3UTR-3UTR GCA 90 bp | GTACTCACAGCAATCCTCCTGCCTCAGACTTTAGAGTGGAAAGTTTTGGTTTTACCATTCTCACTACAGTaGTCTGCTGTGGTCTGTAGG | + |
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Preference number: 2 (lower is better) Translates to: VLTAILLPQTLEWKVLVLPFSLQ*SAVVCR Trigger: CCTACAGACCACAGCAGAGCACTGTAGTGAGAATGG...TAAAACCAAAACTTTCCACTCTAAAGTCTGAGGCAGGAGGATTGCTGTGAGTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000219470.2 |
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| 3UTR-3UTR CCA 90 bp | CTCACACAAGTCTCACAAGCGTCCTTTCTTGTGTCTGTGTCCAAATGCCCTTCTACAGATTGTGAAAGCTaGCTCTTTAATCCACTCCAC | + |
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Preference number: 2 (lower is better) Translates to: LTQVSQASFLVSVSKCPSTDCES*LFNPLH Trigger: GTGGAGTGGATTAAAGAGCCAGCTTTCACAATCTGT...AGAAGGGCATTTGGACACAGACACAAGAAAGGACGCTTGTGAGACTTGTGTGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219488.2 |
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| 3UTR-3UTR TCA 90 bp | GTACTCACAGCAATCCTCCTGCCTCAGACTTTAGAGTGGAAAGTTTTGGTTTTACTCAAAACAGCATCTTaGAATCCAGGATTGAGGTCT | + |
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Preference number: 2 (lower is better) Translates to: VLTAILLPQTLEWKVLVLLKTAS*NPGLRS Trigger: AGACCTCAATCCTGGATTTCAAGATGCTGTTTTGAG...TAAAACCAAAACTTTCCACTCTAAAGTCTGAGGCAGGAGGATTGCTGTGAGTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000219470.2 |
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| 3UTR-3UTR GCA 90 bp | AGCAATCCTCCTGCCTCAGACTTTAGAGTGGAAAGTTTTGGTTTTAAGTATTCATATCACAGTAGCGTGTaGCCTTACAGAATAAGTGGG | + |
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Preference number: 2 (lower is better) Translates to: SNPPASDFRVESFGFKYSYHSSV*PYRISG Trigger: CCCACTTATTCTGTAAGGGCACACGCTACTGTGATA...TGAATACTTAAAACCAAAACTTTCCACTCTAAAGTCTGAGGCAGGAGGATTGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000219470.2 |
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| 3UTR CAA 90 bp | TCTGTAGGGCCCAGCAAATGCCTAAAACCATTCATGAACGCTTCCTaGTTCCTTAGCTCTAAACCTAAATTTCACATAATTGTCAAACTT | + |
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Preference number: 2 (lower is better) Translates to: SVGPSKCLKPFMNAS*FLSSKPKFHIIVKL Trigger: AAGTTTGACAATTATGTGAAATTTAGGTTTAGAGCTAAGGAACAAGGAAGCGTTCATGAATGGTTTTAGGCATTTGCTGGGCCCTACAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219470.2 |
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| 3UTR-3UTR GCA 90 bp | AGCAATCCTCCTGCCTCAGACTTTAGAGTGGAAAGTTTTGGTTTTAAGTATTCATTAGAGCCAATCAAATaGAGATTTAAGGATCTTGAG | + |
|
Preference number: 2 (lower is better) Translates to: SNPPASDFRVESFGFKYSLEPIK*RFKDLE Trigger: CTCAAGATCCTTAAATCTGCATTTGATTGGCTCTAA...TGAATACTTAAAACCAAAACTTTCCACTCTAAAGTCTGAGGCAGGAGGATTGCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085741.2 ENSMUST00000219470.2 |
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| 3UTR GCA 72 bp | TTCCGGCTCCTGCGTCCGGTCCCATTCTCACTACAGTaGTCTGCTGTGGTCTGTAGGGCCCAGCAAATGCCT | + |
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Preference number: 3 (lower is better) Translates to: FRLLRPVPFSLQ*SAVVCRAQQMP Trigger: AGGCATTTGCTGGGCCCTACAGACCACAGCAGAGCACTGTAGTGAGAATGGGACCGGACGCAGGAGCCGGAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219470.2 |
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| 3UTR CCA 72 bp | TGCGTCCGGTCCCATTCTCACTACAGTGCTCTGCTGTaGTCTGTAGGGCCCAGCAAATGCCTAAAACCATTC | + |
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Preference number: 3 (lower is better) Translates to: CVRSHSHYSALL*SVGPSKCLKPF Trigger: GAATGGTTTTAGGCATTTGCTGGGCCCTACAGACCACAGCAGAGCACTGTAGTGAGAATGGGACCGGACGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219470.2 |
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| 3UTR GCA 72 bp | TTAATCCAGGCTTCTAAAAGCTTCACTTCCGGCTCCTaGGTCCGGTCCCATTCTCACTACAGTGCTCTGCTG | + |
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Preference number: 3 (lower is better) Translates to: LIQASKSFTSGS*VRSHSHYSALL Trigger: CAGCAGAGCACTGTAGTGAGAATGGGACCGGACGCAGGAGCCGGAAGTGAAGCTTTTAGAAGCCTGGATTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219470.2 |
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| CDS-3UTR GCA 90 bp | GGCTCCTGCGTCCGGTCCCATTCTCACTACAGTGCTCTGCTGTGGTCTGTAGGGCTGGAGAAGCGAGCCTaGGCCGTGGCCAGGGCGGCC | + |
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Preference number: 4 (lower is better) Translates to: GSCVRSHSHYSALLWSVGLEKRA*AVARAA Trigger: GGCCGCCCTGGCCACGGCGCAGGCTCGCTTCTCCAG...CCCTACAGACCACAGCAGAGCACTGTAGTGAGAATGGGACCGGACGCAGGAGCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219470.2 |
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| CDS-3UTR GCA 90 bp | GACATACCTCACACAAGTCTCACAAGCGTCCTTTCTTGTGTCTGTGTCCAAATGCTGGAGAAGCGAGCCTaGGCCGTGGCCAGGGCGGCC | + |
|
Preference number: 4 (lower is better) Translates to: DIPHTSLTSVLSCVCVQMLEKRA*AVARAA Trigger: GGCCGCCCTGGCCACGGCGCAGGCTCGCTTCTCCAG...CATTTGGACACAGACACAAGAAAGGACGCTTGTGAGACTTGTGTGAGGTATGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219488.2 |
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| CDS-3UTR CCA 90 bp | GGCTCCTGCGTCCGGTCCCATTCTCACTACAGTGCTCTGCTGTGGTCTGTAGGGTGTTGTTATATGCAGTaGCCAAATCCTCAGGGCTAC | + |
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Preference number: 4 (lower is better) Translates to: GSCVRSHSHYSALLWSVGCCYMQ*PNPQGY Trigger: GTAGCCCTGAGGATTTGGCCACTGCATATAACAACA...CCCTACAGACCACAGCAGAGCACTGTAGTGAGAATGGGACCGGACGCAGGAGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000219470.2 |
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| CDS-3UTR GCA 90 bp | AGCAATCCTCCTGCCTCAGACTTTAGAGTGGAAAGTTTTGGTTTTAAGTATTCACTGGAGAAGCGAGCCTaGGCCGTGGCCAGGGCGGCC | + |
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Preference number: 4 (lower is better) Translates to: SNPPASDFRVESFGFKYSLEKRA*AVARAA Trigger: GGCCGCCCTGGCCACGGCGCAGGCTCGCTTCTCCAG...TGAATACTTAAAACCAAAACTTTCCACTCTAAAGTCTGAGGCAGGAGGATTGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085741.2 ENSMUST00000219470.2 |
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| CDS-3UTR GCA 90 bp | AGTGCTCTGCTGTGGTCTGTAGGGCCCAGCAAATGCCTAAAACCATTCATGAACCCCCCTGTTGTTATATaGAGTGGCCAAATCCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: SALLWSVGPSKCLKPFMNPPVVI*SGQILR Trigger: CCTGAGGATTTGGCCACTGCATATAACAACAGGGGG...GTTCATGAATGGTTTTAGGCATTTGCTGGGCCCTACAGACCACAGCAGAGCACT 50% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000219470.2 |
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| CDS-3UTR CCA 90 bp | AGTGCTCTGCTGTGGTCTGTAGGGCCCAGCAAATGCCTAAAACCATTCATGAACTGGGCAGGATTTCTATaGCAGATGTGTAGTCGTCCA | + |
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Preference number: 4 (lower is better) Translates to: SALLWSVGPSKCLKPFMNWAGFL*QMCSRP Trigger: TGGACGACTACACATCTGCCATAGAAATCCTGCCCA...GTTCATGAATGGTTTTAGGCATTTGCTGGGCCCTACAGACCACAGCAGAGCACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219470.2 |
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| CDS-3UTR TCA 90 bp | AGTGCTCTGCTGTGGTCTGTAGGGCCCAGCAAATGCCTAAAACCATTCATGAACCATAAAAATCAACGCTaGAGTACTTGGTTTGCCCCC | + |
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Preference number: 4 (lower is better) Translates to: SALLWSVGPSKCLKPFMNHKNQR*STWFAP Trigger: GGGGGCAAACCAAGTACTTCAGCGTTGATTTTTATG...GTTCATGAATGGTTTTAGGCATTTGCTGGGCCCTACAGACCACAGCAGAGCACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000219470.2 |
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| CDS-3UTR GCA 90 bp | AGTGCTCTGCTGTGGTCTGTAGGGCCCAGCAAATGCCTAAAACCATTCATGAACCTGAAGTACTTGGTTTaGCCCCTGTTGTTATATGCA | + |
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Preference number: 4 (lower is better) Translates to: SALLWSVGPSKCLKPFMNLKYLV*PLLLYA Trigger: TGCATATAACAACAGGGGGCAAACCAAGTACTTCAG...GTTCATGAATGGTTTTAGGCATTTGCTGGGCCCTACAGACCACAGCAGAGCACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000219470.2 |
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| CDS-3UTR CCA 90 bp | CTGTGTCCAAATGCCCTTCTTCTTCTAAAGACTCTGGTCATAAGGGGTGGTGTTTGGGCAGGATTTCTATaGCAGATGTGTAGTCGTCCA | + |
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Preference number: 4 (lower is better) Translates to: LCPNALLLLKTLVIRGGVWAGFL*QMCSRP Trigger: TGGACGACTACACATCTGCCATAGAAATCCTGCCCA...AACACCACCCCTTATGACCAGAGTCTTTAGAAGAAGAAGGGCATTTGGACACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219488.2 |
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| CDS-3UTR TCA 90 bp | CTGTGTCCAAATGCCCTTCTTCTTCTAAAGACTCTGGTCATAAGGGGTGGTGTTCATAAAAATCAACGCTaGAGTACTTGGTTTGCCCCC | + |
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Preference number: 4 (lower is better) Translates to: LCPNALLLLKTLVIRGGVHKNQR*STWFAP Trigger: GGGGGCAAACCAAGTACTTCAGCGTTGATTTTTATG...AACACCACCCCTTATGACCAGAGTCTTTAGAAGAAGAAGGGCATTTGGACACAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000219488.2 |
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| CDS-3UTR CCA 90 bp | CTGTGTCCAAATGCCCTTCTTCTTCTAAAGACTCTGGTCATAAGGGGTGGTGTTTGTTGTTATATGCAGTaGCCAAATCCTCAGGGCTAC | + |
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Preference number: 4 (lower is better) Translates to: LCPNALLLLKTLVIRGGVCCYMQ*PNPQGY Trigger: GTAGCCCTGAGGATTTGGCCACTGCATATAACAACA...AACACCACCCCTTATGACCAGAGTCTTTAGAAGAAGAAGGGCATTTGGACACAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219488.2 |
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| CDS-3UTR GCA 90 bp | AGCAATCCTCCTGCCTCAGACTTTAGAGTGGAAAGTTTTGGTTTTAAGTATTCACCCCCTGTTGTTATATaGAGTGGCCAAATCCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: SNPPASDFRVESFGFKYSPPVVI*SGQILR Trigger: CCTGAGGATTTGGCCACTGCATATAACAACAGGGGG...TGAATACTTAAAACCAAAACTTTCCACTCTAAAGTCTGAGGCAGGAGGATTGCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000085741.2 ENSMUST00000219470.2 |
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| CDS-3UTR GCA 90 bp | GTCTCACAAGCGTCCTTTCTTGTGTCTGTGTCCAAATGCCCTTCTTCTTCTAAACTGAAGTACTTGGTTTaGCCCCTGTTGTTATATGCA | + |
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Preference number: 4 (lower is better) Translates to: VSQASFLVSVSKCPSSSKLKYLV*PLLLYA Trigger: TGCATATAACAACAGGGGGCAAACCAAGTACTTCAG...TTTAGAAGAAGAAGGGCATTTGGACACAGACACAAGAAAGGACGCTTGTGAGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219488.2 |
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| CDS-3UTR GCA 90 bp | GTCTCACAAGCGTCCTTTCTTGTGTCTGTGTCCAAATGCCCTTCTTCTTCTAAAACTGTAAGTCCTTTCTaGTTTGTTTTCGAAGAGGGG | + |
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Preference number: 4 (lower is better) Translates to: VSQASFLVSVSKCPSSSKTVSPF*FVFEEG Trigger: CCCCTCTTCGAAAACAAAGCAGAAAGGACTTACAGT...TTTAGAAGAAGAAGGGCATTTGGACACAGACACAAGAAAGGACGCTTGTGAGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000219488.2 |
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| CDS-3UTR CCA 90 bp | GTACTCACAGCAATCCTCCTGCCTCAGACTTTAGAGTGGAAAGTTTTGGTTTTATGTTGTTATATGCAGTaGCCAAATCCTCAGGGCTAC | + |
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Preference number: 4 (lower is better) Translates to: VLTAILLPQTLEWKVLVLCCYMQ*PNPQGY Trigger: GTAGCCCTGAGGATTTGGCCACTGCATATAACAACA...TAAAACCAAAACTTTCCACTCTAAAGTCTGAGGCAGGAGGATTGCTGTGAGTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085741.2 ENSMUST00000219470.2 |
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| CDS-3UTR CCA 90 bp | GCATGGAAACCATCAGTTATCTCACTTCTACCTAGCTGCAGGAAAGCTGAGAAGATGTGTAGTCGTCCATaGCTTCATAAAAATCAACGC | + |
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Preference number: 4 (lower is better) Translates to: AWKPSVISLLPSCRKAEKMCSRP*LHKNQR Trigger: GCGTTGATTTTTATGAAGCCATGGACGACTACACAT...CTTCTCAGCTTTCCTGCAGCTAGGTAGAAGTGAGATAACTGATGGTTTCCATGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000219470.2 |
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| CDS-3UTR CCA 90 bp | AGCAATCCTCCTGCCTCAGACTTTAGAGTGGAAAGTTTTGGTTTTAAGTATTCATGGGCAGGATTTCTATaGCAGATGTGTAGTCGTCCA | + |
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Preference number: 4 (lower is better) Translates to: SNPPASDFRVESFGFKYSWAGFL*QMCSRP Trigger: TGGACGACTACACATCTGCCATAGAAATCCTGCCCA...TGAATACTTAAAACCAAAACTTTCCACTCTAAAGTCTGAGGCAGGAGGATTGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085741.2 ENSMUST00000219470.2 |
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| CDS-3UTR TCA 90 bp | AGCAATCCTCCTGCCTCAGACTTTAGAGTGGAAAGTTTTGGTTTTAAGTATTCACATAAAAATCAACGCTaGAGTACTTGGTTTGCCCCC | + |
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Preference number: 4 (lower is better) Translates to: SNPPASDFRVESFGFKYSHKNQR*STWFAP Trigger: GGGGGCAAACCAAGTACTTCAGCGTTGATTTTTATG...TGAATACTTAAAACCAAAACTTTCCACTCTAAAGTCTGAGGCAGGAGGATTGCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000085741.2 ENSMUST00000219470.2 |
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| CDS-3UTR TCA 90 bp | AGCAATCCTCCTGCCTCAGACTTTAGAGTGGAAAGTTTTGGTTTTAAGTATTCACTCAAAACAGCATCTTaGAATCCAGGATTGAGGTCT | + |
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Preference number: 4 (lower is better) Translates to: SNPPASDFRVESFGFKYSLKTAS*NPGLRS Trigger: AGACCTCAATCCTGGATTTCAAGATGCTGTTTTGAG...TGAATACTTAAAACCAAAACTTTCCACTCTAAAGTCTGAGGCAGGAGGATTGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000085741.2 |
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| CDS-3UTR GCA 90 bp | AGCAATCCTCCTGCCTCAGACTTTAGAGTGGAAAGTTTTGGTTTTAAGTATTCACTGAAGTACTTGGTTTaGCCCCTGTTGTTATATGCA | + |
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Preference number: 4 (lower is better) Translates to: SNPPASDFRVESFGFKYSLKYLV*PLLLYA Trigger: TGCATATAACAACAGGGGGCAAACCAAGTACTTCAG...TGAATACTTAAAACCAAAACTTTCCACTCTAAAGTCTGAGGCAGGAGGATTGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000085741.2 ENSMUST00000219470.2 |
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| CDS-3UTR CCA 90 bp | AGCAATCCTCCTGCCTCAGACTTTAGAGTGGAAAGTTTTGGTTTTAAGTATTCAATGTGTAGTCGTCCATaGCTTCATAAAAATCAACGC | + |
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Preference number: 4 (lower is better) Translates to: SNPPASDFRVESFGFKYSMCSRP*LHKNQR Trigger: GCGTTGATTTTTATGAAGCCATGGACGACTACACAT...TGAATACTTAAAACCAAAACTTTCCACTCTAAAGTCTGAGGCAGGAGGATTGCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000085741.2 ENSMUST00000219470.2 |
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| CDS TCA 90 bp | TTGTTATATGCAGTGGCCAAATCCTCAGGGCTACATTTGCTCCCGTaGCGCGCGCACTGGCCAATGAAGGCGGAGTACAGCTCCCGGGCC | + |
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Preference number: 5 (lower is better) Translates to: LLYAVAKSSGLHLLP*RAHWPMKAEYSSRA Trigger: GGCCCGGGAGCTGTACTCCGCCTTCATTGGCCAGTGCGCGCGTCACGGGAGCAAATGTAGCCCTGAGGATTTGGCCACTGCATATAACAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000085741.2 ENSMUST00000219470.2 ENSMUST00000219488.2 |
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| CDS-3UTR CAA 90 bp | GGCTCCTGCGTCCGGTCCCATTCTCACTACAGTGCTCTGCTGTGGTCTGTAGGGTCAACGCTGAAGTACTaGGTTTGCCCCCTGTTGTTA | + |
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Preference number: 5 (lower is better) Translates to: GSCVRSHSHYSALLWSVGSTLKY*VCPLLL Trigger: TAACAACAGGGGGCAAACCAAGTACTTCAGCGTTGA...CCCTACAGACCACAGCAGAGCACTGTAGTGAGAATGGGACCGGACGCAGGAGCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000219470.2 |
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| CDS GCA 90 bp | ATAAAAATCAACGCTGAAGTACTTGGTTTGCCCCCTGTTGTTATATaGAGTGGCCAAATCCTCAGGGCTACATTTGCTCCCGTGACGCGC | + |
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Preference number: 5 (lower is better) Translates to: IKINAEVLGLPPVVI*SGQILRATFAPVTR Trigger: GCGCGTCACGGGAGCAAATGTAGCCCTGAGGATTTGGCCACTGCATATAACAACAGGGGGCAAACCAAGTACTTCAGCGTTGATTTTTAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000085741.2 ENSMUST00000219470.2 ENSMUST00000219488.2 |
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| CDS-3UTR CAA 90 bp | AGTGCTCTGCTGTGGTCTGTAGGGCCCAGCAAATGCCTAAAACCATTCATGAACGCTGAAGTACTTGGTTaGCCCCCTGTTGTTATATGC | + |
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Preference number: 5 (lower is better) Translates to: SALLWSVGPSKCLKPFMNAEVLG*PPVVIC Trigger: GCATATAACAACAGGGGGCAAACCAAGTACTTCAGC...GTTCATGAATGGTTTTAGGCATTTGCTGGGCCCTACAGACCACAGCAGAGCACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000219470.2 |
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| CDS CCA 90 bp | GCCTGTAGCGTATCAGGCCTCTGTTATAATAGGGAACTTCAAAGCTaGGCAGGATTTCTATGGCAGATGTGTAGTCGTCCATGGCTTCAT | + |
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Preference number: 5 (lower is better) Translates to: ACSVSGLCYNRELQS*AGFLWQMCSRPWLH Trigger: ATGAAGCCATGGACGACTACACATCTGCCATAGAAATCCTGCCCAGCTTTGAAGTTCCCTATTATAACAGAGGCCTGATACGCTACAGGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000085741.2 ENSMUST00000219470.2 ENSMUST00000219488.2 |
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| CDS-3UTR CAA 90 bp | CATACCTCACACAAGTCTCACAAGCGTCCTTTCTTGTGTCTGTGTCCAAATGCCGCTGAAGTACTTGGTTaGCCCCCTGTTGTTATATGC | + |
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Preference number: 5 (lower is better) Translates to: HTSHKSHKRPFLCLCPNAAEVLG*PPVVIC Trigger: GCATATAACAACAGGGGGCAAACCAAGTACTTCAGC...GGCATTTGGACACAGACACAAGAAAGGACGCTTGTGAGACTTGTGTGAGGTATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000219488.2 |
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| CDS-3UTR CAA 90 bp | GTCTCACAAGCGTCCTTTCTTGTGTCTGTGTCCAAATGCCCTTCTTCTTCTAAATTGGTTTGCCCCCTGTaGTTATATGCAGTGGCCAAA | + |
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Preference number: 5 (lower is better) Translates to: VSQASFLVSVSKCPSSSKLVCPL*LYAVAK Trigger: TTTGGCCACTGCATATAACAACAGGGGGCAAACCAA...TTTAGAAGAAGAAGGGCATTTGGACACAGACACAAGAAAGGACGCTTGTGAGAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000219488.2 |
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| CDS-3UTR CAA 90 bp | GTCTCACAAGCGTCCTTTCTTGTGTCTGTGTCCAAATGCCCTTCTTCTTCTAAATCAACGCTGAAGTACTaGGTTTGCCCCCTGTTGTTA | + |
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Preference number: 5 (lower is better) Translates to: VSQASFLVSVSKCPSSSKSTLKY*VCPLLL Trigger: TAACAACAGGGGGCAAACCAAGTACTTCAGCGTTGA...TTTAGAAGAAGAAGGGCATTTGGACACAGACACAAGAAAGGACGCTTGTGAGAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000219488.2 |
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| CDS TCA 90 bp | CTATGGCAGATGTGTAGTCGTCCATGGCTTCATAAAAATCAACGCTaGAGTACTTGGTTTGCCCCCTGTTGTTATATGCAGTGGCCAAAT | + |
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Preference number: 5 (lower is better) Translates to: LWQMCSRPWLHKNQR*STWFAPCCYMQWPN Trigger: ATTTGGCCACTGCATATAACAACAGGGGGCAAACCAAGTACTTCAGCGTTGATTTTTATGAAGCCATGGACGACTACACATCTGCCATAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000085741.2 ENSMUST00000219470.2 ENSMUST00000219488.2 |
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| CDS-3UTR CAA 90 bp | GTACTCACAGCAATCCTCCTGCCTCAGACTTTAGAGTGGAAAGTTTTGGTTTTATCAACGCTGAAGTACTaGGTTTGCCCCCTGTTGTTA | + |
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Preference number: 5 (lower is better) Translates to: VLTAILLPQTLEWKVLVLSTLKY*VCPLLL Trigger: TAACAACAGGGGGCAAACCAAGTACTTCAGCGTTGA...TAAAACCAAAACTTTCCACTCTAAAGTCTGAGGCAGGAGGATTGCTGTGAGTAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000085741.2 ENSMUST00000219470.2 |
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| CDS-3UTR CAA 90 bp | AGCAATCCTCCTGCCTCAGACTTTAGAGTGGAAAGTTTTGGTTTTAAGTATTCATTGGTTTGCCCCCTGTaGTTATATGCAGTGGCCAAA | + |
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Preference number: 5 (lower is better) Translates to: SNPPASDFRVESFGFKYSLVCPL*LYAVAK Trigger: TTTGGCCACTGCATATAACAACAGGGGGCAAACCAA...TGAATACTTAAAACCAAAACTTTCCACTCTAAAGTCTGAGGCAGGAGGATTGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000085741.2 ENSMUST00000219470.2 |
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| CDS-3UTR CAA 90 bp | AGCAATCCTCCTGCCTCAGACTTTAGAGTGGAAAGTTTTGGTTTTAAGTATTCAGCTGAAGTACTTGGTTaGCCCCCTGTTGTTATATGC | + |
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Preference number: 5 (lower is better) Translates to: SNPPASDFRVESFGFKYSAEVLG*PPVVIC Trigger: GCATATAACAACAGGGGGCAAACCAAGTACTTCAGC...TGAATACTTAAAACCAAAACTTTCCACTCTAAAGTCTGAGGCAGGAGGATTGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000085741.2 ENSMUST00000219470.2 |
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| CDS GCA 72 bp | CGGGCCTCGGCAAACTCGCCCCTGGAGAAGCGAGCCTaGGCCGTGGCCAGGGCGGCCGAGCTCTCTCCGCCC | + |
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Preference number: 6 (lower is better) Translates to: RASANSPLEKRA*AVARAAELSPP Trigger: GGGCGGAGAGAGCTCGGCCGCCCTGGCCACGGCGCAGGCTCGCTTCTCCAGGGGCGAGTTTGCCGAGGCCCG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000085741.2 ENSMUST00000219470.2 ENSMUST00000219488.2 |
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| CDS TCA 72 bp | GCAGTGGCCAAATCCTCAGGGCTACATTTGCTCCCGTaGCGCGCGCACTGGCCAATGAAGGCGGAGTACAGC | + |
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Preference number: 6 (lower is better) Translates to: AVAKSSGLHLLP*RAHWPMKAEYS Trigger: GCTGTACTCCGCCTTCATTGGCCAGTGCGCGCGTCACGGGAGCAAATGTAGCCCTGAGGATTTGGCCACTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000085741.2 ENSMUST00000219470.2 ENSMUST00000219488.2 |
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| CDS GCA 72 bp | AACGCTGAAGTACTTGGTTTGCCCCCTGTTGTTATATaGAGTGGCCAAATCCTCAGGGCTACATTTGCTCCC | + |
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Preference number: 6 (lower is better) Translates to: NAEVLGLPPVVI*SGQILRATFAP Trigger: GGGAGCAAATGTAGCCCTGAGGATTTGGCCACTGCATATAACAACAGGGGGCAAACCAAGTACTTCAGCGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000085741.2 ENSMUST00000219470.2 ENSMUST00000219488.2 |
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| CDS CCA 72 bp | GTATCAGGCCTCTGTTATAATAGGGAACTTCAAAGCTaGGCAGGATTTCTATGGCAGATGTGTAGTCGTCCA | + |
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Preference number: 6 (lower is better) Translates to: VSGLCYNRELQS*AGFLWQMCSRP Trigger: TGGACGACTACACATCTGCCATAGAAATCCTGCCCAGCTTTGAAGTTCCCTATTATAACAGAGGCCTGATAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000085741.2 ENSMUST00000219470.2 ENSMUST00000219488.2 |
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| CDS CAA 72 bp | CATGGCTTCATAAAAATCAACGCTGAAGTACTTGGTTaGCCCCCTGTTGTTATATGCAGTGGCCAAATCCTC | + |
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Preference number: 6 (lower is better) Translates to: HGFIKINAEVLG*PPVVICSGQIL Trigger: GAGGATTTGGCCACTGCATATAACAACAGGGGGCAAACCAAGTACTTCAGCGTTGATTTTTATGAAGCCATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000085741.2 ENSMUST00000219470.2 ENSMUST00000219488.2 |
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| CDS TCA 72 bp | ATGTGTAGTCGTCCATGGCTTCATAAAAATCAACGCTaGAGTACTTGGTTTGCCCCCTGTTGTTATATGCAG | + |
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Preference number: 6 (lower is better) Translates to: MCSRPWLHKNQR*STWFAPCCYMQ Trigger: CTGCATATAACAACAGGGGGCAAACCAAGTACTTCAGCGTTGATTTTTATGAAGCCATGGACGACTACACAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000085741.2 ENSMUST00000219470.2 ENSMUST00000219488.2 |
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| CDS CCA 72 bp | TATAATAGGGAACTTCAAAGCTGGGCAGGATTTCTATaGCAGATGTGTAGTCGTCCATGGCTTCATAAAAAT | + |
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Preference number: 6 (lower is better) Translates to: YNRELQSWAGFL*QMCSRPWLHKN Trigger: ATTTTTATGAAGCCATGGACGACTACACATCTGCCATAGAAATCCTGCCCAGCTTTGAAGTTCCCTATTATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000085741.2 ENSMUST00000219470.2 ENSMUST00000219488.2 |
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