Pregenerated sensors for TTC30B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075273Ensembl transcript IDs: ENSMUST00000099996.5
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTTCCAAAGTACTTTCTAGGGCCTGGGTTCTTACACAATCTCACTTaGCAGGATTTAAAAGTGCAGGTTATATCGAATAGTGCTTTTGTT | + |
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Preference number: 1 (lower is better) Translates to: VPKYFLGPGFLHNLT*QDLKVQVISNSAFV Trigger: AACAAAAGCACTATTCGATATAACCTGCACTTTTAAATCCTGTCAAGTGAGATTGTGTAAGAACCCAGGCCCTAGAAAGTACTTTGGAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| 3UTR CCA 90 bp | ATTACAAGAAGACGTTATGGACGACTAAGTTCTGAACTTAGTGTCTaGTCCCTGGATAACATAATAGCAAAGGTTGTCCAAGATACATCA | + |
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Preference number: 1 (lower is better) Translates to: ITRRRYGRLSSELSV*SLDNIIAKVVQDTS Trigger: TGATGTATCTTGGACAACCTTTGCTATTATGTTATCCAGGGACCAGACACTAAGTTCAGAACTTAGTCGTCCATAACGTCTTCTTGTAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| 3UTR-3UTR TCA 90 bp | TGGTCCCTGGATAACATAATAGCAAAGGTTGTCCAAGATACATCAAAACCAAACTTACACAATCTCACTTaGCAGGATTTAAAAGTGCAG | + |
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Preference number: 2 (lower is better) Translates to: WSLDNIIAKVVQDTSKPNLHNLT*QDLKVQ Trigger: CTGCACTTTTAAATCCTGTCAAGTGAGATTGTGTAA...GTTTGGTTTTGATGTATCTTGGACAACCTTTGCTATTATGTTATCCAGGGACCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| 3UTR CCA 72 bp | AGACGTTATGGACGACTAAGTTCTGAACTTAGTGTCTaGTCCCTGGATAACATAATAGCAAAGGTTGTCCAA | + |
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Preference number: 3 (lower is better) Translates to: RRYGRLSSELSV*SLDNIIAKVVQ Trigger: TTGGACAACCTTTGCTATTATGTTATCCAGGGACCAGACACTAAGTTCAGAACTTAGTCGTCCATAACGTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| 3UTR TCA 72 bp | TACTTTCTAGGGCCTGGGTTCTTACACAATCTCACTTaGCAGGATTTAAAAGTGCAGGTTATATCGAATAGT | + |
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Preference number: 3 (lower is better) Translates to: YFLGPGFLHNLT*QDLKVQVISNS Trigger: ACTATTCGATATAACCTGCACTTTTAAATCCTGTCAAGTGAGATTGTGTAAGAACCCAGGCCCTAGAAAGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| 3UTR CCA 72 bp | CTCAGTTTTAAAAGTTCCAAAGTACTTTCTAGGGCCTaGGTTCTTACACAATCTCACTTGACAGGATTTAAA | + |
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Preference number: 3 (lower is better) Translates to: LSFKSSKVLSRA*VLTQSHLTGFK Trigger: TTTAAATCCTGTCAAGTGAGATTGTGTAAGAACCCAGGCCCTAGAAAGTACTTTGGAACTTTTAAAACTGAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| CDS-3UTR TCA 90 bp | TTTAAAAGTTCCAAAGTACTTTCTAGGGCCTGGGTTCTTACACAATCTCACTTGCAGCTGCACCGCCTCTaGGTAGCGGGAGTCGCGGAT | + |
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Preference number: 4 (lower is better) Translates to: FKSSKVLSRAWVLTQSHLQLHRL*VAGVAD Trigger: ATCCGCGACTCCCGCTACTCAGAGGCGGTGCAGCTG...CAAGTGAGATTGTGTAAGAACCCAGGCCCTAGAAAGTACTTTGGAACTTTTAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| CDS-3UTR GCA 90 bp | TGGTCCCTGGATAACATAATAGCAAAGGTTGTCCAAGATACATCAAAACCAAACCTGCGGGAGCTCCTCTaGAGCTCTGCGCTCAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: WSLDNIIAKVVQDTSKPNLRELL*SSALSS Trigger: GCTGCTGAGCGCAGAGCTGCAGAGGAGCTCCCGCAG...GTTTGGTTTTGATGTATCTTGGACAACCTTTGCTATTATGTTATCCAGGGACCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| CDS-3UTR GCA 90 bp | CTTTCTAGGGCCTGGGTTCTTACACAATCTCACTTGACAGGATTTAAAAGTGCAGTGAGTTTCCGGAGCTaGTCAGTCAGCATGCCAGCC | + |
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Preference number: 4 (lower is better) Translates to: LSRAWVLTQSHLTGFKSAVSFRS*SVSMPA Trigger: GGCTGGCATGCTGACTGAGCAGCTCCGGAAACTCAC...TGCACTTTTAAATCCTGTCAAGTGAGATTGTGTAAGAACCCAGGCCCTAGAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| CDS-3UTR CCA 90 bp | CTTTCTAGGGCCTGGGTTCTTACACAATCTCACTTGACAGGATTTAAAAGTGCACAGGCTCCTGGCTCCTaGGAGGTCACCTTCACTGTA | + |
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Preference number: 4 (lower is better) Translates to: LSRAWVLTQSHLTGFKSAQAPGS*EVTFTV Trigger: TACAGTGAAGGTGACCTCCCAGGAGCCAGGAGCCTG...TGCACTTTTAAATCCTGTCAAGTGAGATTGTGTAAGAACCCAGGCCCTAGAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| CDS-3UTR CCA 90 bp | TGGTCCCTGGATAACATAATAGCAAAGGTTGTCCAAGATACATCAAAACCAAACGCTCCACCAGGCTCCTaGCTCCTGGGAGGTCACCTT | + |
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Preference number: 4 (lower is better) Translates to: WSLDNIIAKVVQDTSKPNAPPGS*LLGGHL Trigger: AAGGTGACCTCCCAGGAGCCAGGAGCCTGGTGGAGC...GTTTGGTTTTGATGTATCTTGGACAACCTTTGCTATTATGTTATCCAGGGACCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| CDS-3UTR CCA 90 bp | TCAGTTTTAAAAGTTCCAAAGTACTTTCTAGGGCCTGGGTTCTTACACAATCTCGCCCACACCGAGTTCTaGGTGTTGACGGATGCCACG | + |
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Preference number: 4 (lower is better) Translates to: SVLKVPKYFLGPGFLHNLAHTEF*VLTDAT Trigger: CGTGGCATCCGTCAACACCCAGAACTCGGTGTGGGC...GAGATTGTGTAAGAACCCAGGCCCTAGAAAGTACTTTGGAACTTTTAAAACTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| CDS-3UTR TCA 90 bp | CTTTCTAGGGCCTGGGTTCTTACACAATCTCACTTGACAGGATTTAAAAGTGCACCTGTACTTGTATGGTaGGTTTCCGGAGCTGCTCAG | + |
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Preference number: 4 (lower is better) Translates to: LSRAWVLTQSHLTGFKSAPVLVW*VSGAAQ Trigger: CTGAGCAGCTCCGGAAACTCACCATACAAGTACAGG...TGCACTTTTAAATCCTGTCAAGTGAGATTGTGTAAGAACCCAGGCCCTAGAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| CDS-3UTR TCA 90 bp | CTTTCTAGGGCCTGGGTTCTTACACAATCTCACTTGACAGGATTTAAAAGTGCAACTTGTTCTCCTGCATaGAGAGGACATGGGCCACAT | + |
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Preference number: 4 (lower is better) Translates to: LSRAWVLTQSHLTGFKSATCSPA*RGHGPH Trigger: ATGTGGCCCATGTCCTCTTCATGCAGGAGAACAAGT...TGCACTTTTAAATCCTGTCAAGTGAGATTGTGTAAGAACCCAGGCCCTAGAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| CDS-3UTR CCA 90 bp | TCAGTTTTAAAAGTTCCAAAGTACTTTCTAGGGCCTGGGTTCTTACACAATCTCTTCCTCTGCTCTGGGTaGCATGTCAGTGAGGGCTTC | + |
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Preference number: 4 (lower is better) Translates to: SVLKVPKYFLGPGFLHNLFLCSG*HVSEGF Trigger: GAAGCCCTCACTGACATGCCACCCAGAGCAGAGGAA...GAGATTGTGTAAGAACCCAGGCCCTAGAAAGTACTTTGGAACTTTTAAAACTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| CDS-3UTR CCA 90 bp | CTTTCTAGGGCCTGGGTTCTTACACAATCTCACTTGACAGGATTTAAAAGTGCATGCATGAAGAGGACATaGGCCACATTCAGCTTCCAC | + |
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Preference number: 4 (lower is better) Translates to: LSRAWVLTQSHLTGFKSACMKRT*ATFSFH Trigger: GTGGAAGCTGAATGTGGCCCATGTCCTCTTCATGCA...TGCACTTTTAAATCCTGTCAAGTGAGATTGTGTAAGAACCCAGGCCCTAGAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| CDS-3UTR CCA 90 bp | TGGTCCCTGGATAACATAATAGCAAAGGTTGTCCAAGATACATCAAAACCAAACGGGAAGGGGTTCTGCTaGAGCAGAAACTGGAGCTTT | + |
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Preference number: 4 (lower is better) Translates to: WSLDNIIAKVVQDTSKPNGKGFC*SRNWSF Trigger: AAAGCTCCAGTTTCTGCTCCAGCAGAACCCCTTCCC...GTTTGGTTTTGATGTATCTTGGACAACCTTTGCTATTATGTTATCCAGGGACCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| CDS-3UTR CCA 90 bp | TTTAAAAGTTCCAAAGTACTTTCTAGGGCCTGGGTTCTTACACAATCTCACTTGGGGCCGCTAAGAACTTaGAACAGGCAGCTTCATAGT | + |
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Preference number: 4 (lower is better) Translates to: FKSSKVLSRAWVLTQSHLGPLRT*NRQLHS Trigger: ACTATGAAGCTGCCTGTTCCAAGTTCTTAGCGGCCC...CAAGTGAGATTGTGTAAGAACCCAGGCCCTAGAAAGTACTTTGGAACTTTTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| CDS-3UTR TCA 90 bp | TTTAAAAGTTCCAAAGTACTTTCTAGGGCCTGGGTTCTTACACAATCTCACTTGAACTGCACACATTCTTaGATGACACTGTCCCTTAGC | + |
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Preference number: 4 (lower is better) Translates to: FKSSKVLSRAWVLTQSHLNCTHS*MTLSLS Trigger: GCTAAGGGACAGTGTCATTCAAGAATGTGTGCAGTT...CAAGTGAGATTGTGTAAGAACCCAGGCCCTAGAAAGTACTTTGGAACTTTTAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| CDS-3UTR TCA 90 bp | CTTTCTAGGGCCTGGGTTCTTACACAATCTCACTTGACAGGATTTAAAAGTGCATTCTTGATTCATATGTaGCTGTATTCTTCCCAGTGT | + |
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Preference number: 4 (lower is better) Translates to: LSRAWVLTQSHLTGFKSAFLIHM*LYSSQC Trigger: ACACTGGGAAGAATACAGTCACATATGAATCAAGAA...TGCACTTTTAAATCCTGTCAAGTGAGATTGTGTAAGAACCCAGGCCCTAGAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| CDS-3UTR TCA 90 bp | CTTTCTAGGGCCTGGGTTCTTACACAATCTCACTTGACAGGATTTAAAAGTGCAAGCCCTCAACTTTCTTaGTTCATATGTGACTGTATT | + |
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Preference number: 4 (lower is better) Translates to: LSRAWVLTQSHLTGFKSASPQLS*FICDCI Trigger: AATACAGTCACATATGAATCAAGAAAGTTGAGGGCT...TGCACTTTTAAATCCTGTCAAGTGAGATTGTGTAAGAACCCAGGCCCTAGAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| CDS-3UTR GCA 90 bp | TTTAAAAGTTCCAAAGTACTTTCTAGGGCCTGGGTTCTTACACAATCTCACTTGGTATTCTTCCCAGTGTaGATTCTTTCTTCCTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: FKSSKVLSRAWVLTQSHLVFFPV*ILSSSK Trigger: CTTGGAGGAAGAAAGAATGCACACTGGGAAGAATAC...CAAGTGAGATTGTGTAAGAACCCAGGCCCTAGAAAGTACTTTGGAACTTTTAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| CDS-3UTR TCA 90 bp | TCAGTTTTAAAAGTTCCAAAGTACTTTCTAGGGCCTGGGTTCTTACACAATCTCATCTCTACTATGCCTTaGATCCTGTACTTGTATGGT | + |
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Preference number: 4 (lower is better) Translates to: SVLKVPKYFLGPGFLHNLISTMP*ILYLYG Trigger: ACCATACAAGTACAGGATTCAAGGCATAGTAGAGAT...GAGATTGTGTAAGAACCCAGGCCCTAGAAAGTACTTTGGAACTTTTAAAACTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| CDS-3UTR CCA 90 bp | TCAGTTTTAAAAGTTCCAAAGTACTTTCTAGGGCCTGGGTTCTTACACAATCTCGTAGATTTTCTTGTCTaGGTCACCATAAGAGAGTTG | + |
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Preference number: 4 (lower is better) Translates to: SVLKVPKYFLGPGFLHNLVDFLV*VTIREL Trigger: CAACTCTCTTATGGTGACCCAGACAAGAAAATCTAC...GAGATTGTGTAAGAACCCAGGCCCTAGAAAGTACTTTGGAACTTTTAAAACTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| CDS-3UTR GCA 90 bp | TGGTCCCTGGATAACATAATAGCAAAGGTTGTCCAAGATACATCAAAACCAAACTCATCATCTCTACTATaGCTTGAATCCTGTACTTGT | + |
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Preference number: 4 (lower is better) Translates to: WSLDNIIAKVVQDTSKPNSSSLL*LESCTC Trigger: ACAAGTACAGGATTCAAGGCATAGTAGAGATGATGA...GTTTGGTTTTGATGTATCTTGGACAACCTTTGCTATTATGTTATCCAGGGACCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| CDS-3UTR CCA 90 bp | TCAGTTTTAAAAGTTCCAAAGTACTTTCTAGGGCCTGGGTTCTTACACAATCTCCTGTTCTATAACAGCTaGAATGTTTCTACCATAAAG | + |
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Preference number: 4 (lower is better) Translates to: SVLKVPKYFLGPGFLHNLLFYNS*NVSTIK Trigger: CTTTATGGTAGAAACATTCCAGCTGTTATAGAACAG...GAGATTGTGTAAGAACCCAGGCCCTAGAAAGTACTTTGGAACTTTTAAAACTGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| CDS-3UTR CAA 90 bp | CTTTCTAGGGCCTGGGTTCTTACACAATCTCACTTGACAGGATTTAAAAGTGCAATGGCTGCCTTGAGGTaGAAGGCTTCGACCAGAGCA | + |
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Preference number: 5 (lower is better) Translates to: LSRAWVLTQSHLTGFKSAMAALR*KASTRA Trigger: TGCTCTGGTCGAAGCCTTCAACCTCAAGGCAGCCAT...TGCACTTTTAAATCCTGTCAAGTGAGATTGTGTAAGAACCCAGGCCCTAGAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| CDS-3UTR CAA 90 bp | TGGTCCCTGGATAACATAATAGCAAAGGTTGTCCAAGATACATCAAAACCAAACCATCTCTACTATGCCTaGAATCCTGTACTTGTATGG | + |
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Preference number: 5 (lower is better) Translates to: WSLDNIIAKVVQDTSKPNHLYYA*NPVLVW Trigger: CCATACAAGTACAGGATTCAAGGCATAGTAGAGATG...GTTTGGTTTTGATGTATCTTGGACAACCTTTGCTATTATGTTATCCAGGGACCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| CDS-3UTR CAA 90 bp | TTTAAAAGTTCCAAAGTACTTTCTAGGGCCTGGGTTCTTACACAATCTCACTTGAGATCTTCTCCACCATaGGGTAATTCTCAAAGTTCC | + |
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Preference number: 5 (lower is better) Translates to: FKSSKVLSRAWVLTQSHLRSSPP*GNSQSS Trigger: GGAACTTTGAGAATTACCCAATGGTGGAGAAGATCT...CAAGTGAGATTGTGTAAGAACCCAGGCCCTAGAAAGTACTTTGGAACTTTTAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| CDS-3UTR CAA 90 bp | TCAGTTTTAAAAGTTCCAAAGTACTTTCTAGGGCCTGGGTTCTTACACAATCTCCTCAGCTTCCTCATTTaGACTTGTCATGATATAGGA | + |
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Preference number: 5 (lower is better) Translates to: SVLKVPKYFLGPGFLHNLLSFLI*TCHDIG Trigger: TCCTATATCATGACAAGTCAAAATGAGGAAGCTGAG...GAGATTGTGTAAGAACCCAGGCCCTAGAAAGTACTTTGGAACTTTTAAAACTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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| CDS TCA 72 bp | CATAGTGTCCCTCTTTGTAGAGCAGACAACCTAGGTTaGTCTGACCATCATAATCACTCTCCCCTCCACTGT | + |
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Preference number: 6 (lower is better) Translates to: HSVPLCRADNLG*SDHHNHSPLHC Trigger: ACAGTGGAGGGGAGAGTGATTATGATGGTCAGATCAACCTAGGTTGTCTGCTCTACAAAGAGGGACACTATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099996.5 |
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