Pregenerated sensors for TTC30A2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075272Ensembl transcript IDs: ENSMUST00000099995.5
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCTTTACAGCACAAAGCTGAAACTCTAAGAGCTGCTCAGTTCTTGTaGAACTACAGAAATGCCATTGCAGCAACTGAGGACTGTGTCGAG | + |
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Preference number: 1 (lower is better) Translates to: PLQHKAETLRAAQFL*NYRNAIAATEDCVE Trigger: CTCGACACAGTCCTCAGTTGCTGCAATGGCATTTCTGTAGTTGCACAAGAACTGAGCAGCTCTTAGAGTTTCAGCTTTGTGCTGTAAAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099995.5 |
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| 3UTR CAA 90 bp | TCCCCTTTACAGCACAAAGCTGAAACTCTAAGAGCTGCTCAGTTCTaGTGCAACTACAGAAATGCCATTGCAGCAACTGAGGACTGTGTC | + |
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Preference number: 2 (lower is better) Translates to: SPLQHKAETLRAAQF*CNYRNAIAATEDCV Trigger: GACACAGTCCTCAGTTGCTGCAATGGCATTTCTGTAGTTGCACAAGAACTGAGCAGCTCTTAGAGTTTCAGCTTTGTGCTGTAAAGGGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099995.5 |
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| 3UTR CAA 90 bp | AAAGCACAGACTATCAAGACAAAGAAATCTGCCTTCTGTTTCTCTTaGCTAATGGAGAGATGGTTTGTTGGTCCAGCAATTGGGTCTACT | + |
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Preference number: 2 (lower is better) Translates to: KAQTIKTKKSAFCFS*LMERWFVGPAIGST Trigger: AGTAGACCCAATTGCTGGACCAACAAACCATCTCTCCATTAGCAAAGAGAAACAGAAGGCAGATTTCTTTGTCTTGATAGTCTGTGCTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099995.5 |
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| 3UTR-3UTR CAA 90 bp | GTTGGTCCAGCAATTGGGTCTACTAGGCAGTCACAGAAGGACTGTATATCAGTAACTACAGAAATGCCATaGCAGCAACTGAGGACTGTG | + |
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Preference number: 3 (lower is better) Translates to: VGPAIGSTRQSQKDCISVTTEMP*QQLRTV Trigger: CACAGTCCTCAGTTGCTGCAATGGCATTTCTGTAGT...TACTGATATACAGTCCTTCTGTGACTGCCTAGTAGACCCAATTGCTGGACCAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099995.5 |
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| 3UTR TCA 72 bp | GTTCTTGTGCAACTACAGAAATGCCATTGCAGCAACTaGGGACTGTGTCGAGTCGTAAAAATGCAGGAGCCT | + |
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Preference number: 3 (lower is better) Translates to: VLVQLQKCHCSN*GLCRVVKMQEP Trigger: AGGCTCCTGCATTTTTACGACTCGACACAGTCCTCAGTTGCTGCAATGGCATTTCTGTAGTTGCACAAGAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099995.5 |
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| 3UTR GCA 72 bp | CACAAAGCTGAAACTCTAAGAGCTGCTCAGTTCTTGTaGAACTACAGAAATGCCATTGCAGCAACTGAGGAC | + |
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Preference number: 3 (lower is better) Translates to: HKAETLRAAQFL*NYRNAIAATED Trigger: GTCCTCAGTTGCTGCAATGGCATTTCTGTAGTTGCACAAGAACTGAGCAGCTCTTAGAGTTTCAGCTTTGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099995.5 |
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| 3UTR CCA 72 bp | AAATCTGCCTTCTGTTTCTCTTTGCTAATGGAGAGATaGTTTGTTGGTCCAGCAATTGGGTCTACTAGGCAG | + |
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Preference number: 3 (lower is better) Translates to: KSAFCFSLLMER*FVGPAIGSTRQ Trigger: CTGCCTAGTAGACCCAATTGCTGGACCAACAAACCATCTCTCCATTAGCAAAGAGAAACAGAAGGCAGATTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099995.5 |
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| 3UTR TCA 72 bp | AGTCGTAAAAATGCAGGAGCCTATAATACACATATATaGAGGCTACCAAGGTGGAAAGGCTGTCATAGTGTT | + |
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Preference number: 3 (lower is better) Translates to: SRKNAGAYNTHI*RLPRWKGCHSV Trigger: AACACTATGACAGCCTTTCCACCTTGGTAGCCTTCATATATGTGTATTATAGGCTCCTGCATTTTTACGACT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099995.5 |
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| CDS-3UTR TCA 90 bp | GCTGCTCAGTTCTTGTGCAACTACAGAAATGCCATTGCAGCAACTGAGGACTGTCAGTTGCACCGCCTCTaGGTAGCGGGAGTCGCGGAT | + |
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Preference number: 4 (lower is better) Translates to: AAQFLCNYRNAIAATEDCQLHRL*VAGVAD Trigger: ATCCGCGACTCCCGCTACTCAGAGGCGGTGCAACTG...ACAGTCCTCAGTTGCTGCAATGGCATTTCTGTAGTTGCACAAGAACTGAGCAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099995.5 |
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| CDS-3UTR GCA 90 bp | CTGCTCAGTTCTTGTGCAACTACAGAAATGCCATTGCAGCAACTGAGGACTGTGGCTCCTCTGCAGCTCTaGGCTCAGCAGTTGCACCGC | + |
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Preference number: 4 (lower is better) Translates to: LLSSCATTEMPLQQLRTVAPLQL*AQQLHR Trigger: GCGGTGCAACTGCTGAGCGCAGAGCTGCAGAGGAGC...CACAGTCCTCAGTTGCTGCAATGGCATTTCTGTAGTTGCACAAGAACTGAGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099995.5 |
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| CDS-3UTR CCA 90 bp | GCTCAGTTCTTGTGCAACTACAGAAATGCCATTGCAGCAACTGAGGACTGTGTCTCACCGTCGGGGATCTaGGAGTTGCTCAGCCCTGCC | + |
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Preference number: 4 (lower is better) Translates to: AQFLCNYRNAIAATEDCVSPSGI*ELLSPA Trigger: GGCAGGGCTGAGCAACTCCCAGATCCCCGACGGTGA...GACACAGTCCTCAGTTGCTGCAATGGCATTTCTGTAGTTGCACAAGAACTGAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099995.5 |
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| CDS-3UTR CCA 90 bp | CTGCTCAGTTCTTGTGCAACTACAGAAATGCCATTGCAGCAACTGAGGACTGTGCTCGGCTATAGAAGGTaGGGTTGTCCAGGAGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: LLSSCATTEMPLQQLRTVLGYRR*GCPGGR Trigger: CCTTCCTCCTGGACAACCCCACCTTCTATAGCCGAG...CACAGTCCTCAGTTGCTGCAATGGCATTTCTGTAGTTGCACAAGAACTGAGCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099995.5 |
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| CDS-3UTR GCA 90 bp | AAAGAAATCTGCCTTCTGTTTCTCTTTGCTAATGGAGAGATGGTTTGTTGGTCCCTGCGGGAGCTCCTCTaGAGCTCTGCGCTCAGCAGT | + |
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Preference number: 4 (lower is better) Translates to: KEICLLFLFANGEMVCWSLRELL*SSALSS Trigger: ACTGCTGAGCGCAGAGCTGCAGAGGAGCTCCCGCAG...GGACCAACAAACCATCTCTCCATTAGCAAAGAGAAACAGAAGGCAGATTTCTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099995.5 |
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| CDS-3UTR GCA 90 bp | GGAAAGGCTGTCATAGTGTTAAGTATACAAAGTCAAACCAGAAACAAACAGAAACAGCAGCGACAGCCCTaGGCGGCTGCGGGAGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: GKAVIVLSIQSQTRNKQKQQRQP*AAAGAP Trigger: AGGAGCTCCCGCAGCCGCGCAGGGCTGTCGCTGCTG...TTTCTGTTTGTTTCTGGTTTGACTTTGTATACTTAACACTATGACAGCCTTTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099995.5 |
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| CDS-3UTR GCA 90 bp | GGAAAGGCTGTCATAGTGTTAAGTATACAAAGTCAAACCAGAAACAAACAGAAAACAGCCCTGCGCGGCTaGGGGAGCTCCTCTGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: GKAVIVLSIQSQTRNKQKTALRG*GSSSAA Trigger: AGCTGCAGAGGAGCTCCCGCAGCCGCGCAGGGCTGT...TTTCTGTTTGTTTCTGGTTTGACTTTGTATACTTAACACTATGACAGCCTTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099995.5 |
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| CDS-3UTR TCA 90 bp | CAGCACAAAGCTGAAACTCTAAGAGCTGCTCAGTTCTTGTGCAACTACAGAAATGCAGACAACCCATGTTaGCCAAACCATCTGGGTCAT | + |
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Preference number: 4 (lower is better) Translates to: QHKAETLRAAQFLCNYRNADNPC*PNHLGH Trigger: ATGACCCAGATGGTTTGGTCAACATGGGTTGTCTGC...ATTTCTGTAGTTGCACAAGAACTGAGCAGCTCTTAGAGTTTCAGCTTTGTGCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099995.5 |
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| CDS-3UTR GCA 90 bp | CTGCTCAGTTCTTGTGCAACTACAGAAATGCCATTGCAGCAACTGAGGACTGTGCAGCAGGGATGTTTCTaGCAAAAATTTCACAGTGCT | + |
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Preference number: 4 (lower is better) Translates to: LLSSCATTEMPLQQLRTVQQGCF*QKFHSA Trigger: AGCACTGTGAAATTTTTGGCAGAAACATCCCTGCTG...CACAGTCCTCAGTTGCTGCAATGGCATTTCTGTAGTTGCACAAGAACTGAGCAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099995.5 |
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| 3UTR CAA 72 bp | GAGCTGCTCAGTTCTTGTGCAACTACAGAAATGCCATaGCAGCAACTGAGGACTGTGTCGAGTCGTAAAAAT | + |
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Preference number: 4 (lower is better) Translates to: ELLSSCATTEMP*QQLRTVSSRKN Trigger: ATTTTTACGACTCGACACAGTCCTCAGTTGCTGCAATGGCATTTCTGTAGTTGCACAAGAACTGAGCAGCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099995.5 |
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| 3UTR CAA 72 bp | CAGCACAAAGCTGAAACTCTAAGAGCTGCTCAGTTCTaGTGCAACTACAGAAATGCCATTGCAGCAACTGAG | + |
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Preference number: 4 (lower is better) Translates to: QHKAETLRAAQF*CNYRNAIAATE Trigger: CTCAGTTGCTGCAATGGCATTTCTGTAGTTGCACAAGAACTGAGCAGCTCTTAGAGTTTCAGCTTTGTGCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099995.5 |
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| CDS-3UTR TCA 90 bp | TTGTTGGTCCAGCAATTGGGTCTACTAGGCAGTCACAGAAGGACTGTATATCAGTTATGCCTTGCTTCTTaGACTTGCTTAGTGAGTCTC | + |
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Preference number: 4 (lower is better) Translates to: LLVQQLGLLGSHRRTVYQLCLAS*TCLVSL Trigger: GAGACTCACTAAGCAAGTTCAAGAAGCAAGGCATAA...CTGATATACAGTCCTTCTGTGACTGCCTAGTAGACCCAATTGCTGGACCAACAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099995.5 |
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| CDS-3UTR CCA 90 bp | CAGCACAAAGCTGAAACTCTAAGAGCTGCTCAGTTCTTGTGCAACTACAGAAATAATATGCTTCAGTGCTaGGGCATAGTGCCTGTTGCT | + |
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Preference number: 4 (lower is better) Translates to: QHKAETLRAAQFLCNYRNNMLQC*GIVPVA Trigger: AGCAACAGGCACTATGCCCCAGCACTGAAGCATATT...ATTTCTGTAGTTGCACAAGAACTGAGCAGCTCTTAGAGTTTCAGCTTTGTGCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099995.5 |
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| CDS-3UTR CCA 90 bp | GGAAAGGCTGTCATAGTGTTAAGTATACAAAGTCAAACCAGAAACAAACAGAAAAAGCCGCAAAGAATTTaGAGCAGGCAGCTTCATAGT | + |
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Preference number: 4 (lower is better) Translates to: GKAVIVLSIQSQTRNKQKKPQRI*SRQLHS Trigger: ACTATGAAGCTGCCTGCTCCAAATTCTTTGCGGCTT...TTTCTGTTTGTTTCTGGTTTGACTTTGTATACTTAACACTATGACAGCCTTTCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099995.5 |
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| CDS-3UTR GCA 90 bp | CCAAGGTGGAAAGGCTGTCATAGTGTTAAGTATACAAAGTCAAACCAGAAACAACTTAGCATAATTGTGTaGTTTGACATGTTCTCTAGT | + |
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Preference number: 4 (lower is better) Translates to: PRWKGCHSVKYTKSNQKQLSIIV*FDMFSS Trigger: ACTAGAGAACATGTCAAAGCACACAATTATGCTAAG...TTGTTTCTGGTTTGACTTTGTATACTTAACACTATGACAGCCTTTCCACCTTGG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099995.5 |
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| CDS-3UTR CAA 90 bp | AAAGAAATCTGCCTTCTGTTTCTCTTTGCTAATGGAGAGATGGTTTGTTGGTCCTCACCTTCACTGTACTaGATAGCAGCTTGTAAACGA | + |
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Preference number: 5 (lower is better) Translates to: KEICLLFLFANGEMVCWSSPSLY*IAACKR Trigger: TCGTTTACAAGCTGCTATCAAGTACAGTGAAGGTGA...GGACCAACAAACCATCTCTCCATTAGCAAAGAGAAACAGAAGGCAGATTTCTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099995.5 |
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