Pregenerated sensors for TTC30A1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075271Ensembl transcript IDs: ENSMUST00000099994.5
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | GCTAAGGCCCATGGCAGATACGTGTCCTCCATGGGTAAAATGATGTaGTTCACAAACAACAAAGCACAGTATGAAACAGCAACGAAAAGA | + |
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Preference number: 2 (lower is better) Translates to: AKAHGRYVSSMGKMM*FTNNKAQYETATKR Trigger: TCTTTTCGTTGCTGTTTCATACTGTGCTTTGTTGTTTGTGAACAACATCATTTTACCCATGGAGGACACGTATCTGCCATGGGCCTTAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| 3UTR-3UTR CCA 90 bp | AGCTGTTGTTGCATTGCAAGAATTTGGTGGTTTTGTGCGTTTCAAACTTTCAAACCTGTGAGAGGTAACTaGGATGGCTGTGGCCACAAA | + |
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Preference number: 2 (lower is better) Translates to: SCCCIARIWWFCAFQTFKPVRGN*DGCGHK Trigger: TTTGTGGCCACAGCCATCCCAGTTACCTCTCACAGG...TTTGAAAGTTTGAAACGCACAAAACCACCAAATTCTTGCAATGCAACAACAGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| 3UTR-3UTR GCA 90 bp | CAAATCTCTGACACACCTGCTACTATTTCTCTACCTAAAGGGATGACTGTATGTATAGGGTTTACTTTATaGCTTTGGGAACTGGAGGGT | + |
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Preference number: 2 (lower is better) Translates to: QISDTPATISLPKGMTVCIGFTL*LWELEG Trigger: ACCCTCCAGTTCCCAAAGGCATAAAGTAAACCCTAT...ACATACAGTCATCCCTTTAGGTAGAGAAATAGTAGCAGGTGTGTCAGAGATTTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| 3UTR-3UTR TCA 90 bp | CAAATCTCTGACACACCTGCTACTATTTCTCTACCTAAAGGGATGACTGTATGTCAACAAAGCACAGTATaGAACAGCAACGAAAAGATG | + |
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Preference number: 2 (lower is better) Translates to: QISDTPATISLPKGMTVCQQSTV*NSNEKM Trigger: CATCTTTTCGTTGCTGTTTCATACTGTGCTTTGTTG...ACATACAGTCATCCCTTTAGGTAGAGAAATAGTAGCAGGTGTGTCAGAGATTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| 3UTR-3UTR GCA 90 bp | CAAATCTCTGACACACCTGCTACTATTTCTCTACCTAAAGGGATGACTGTATGTAAGCTGTTGTTGCATTaGAAGAATTTGGTGGTTTTG | + |
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Preference number: 2 (lower is better) Translates to: QISDTPATISLPKGMTVCKLLLH*KNLVVL Trigger: CAAAACCACCAAATTCTTGCAATGCAACAACAGCTT...ACATACAGTCATCCCTTTAGGTAGAGAAATAGTAGCAGGTGTGTCAGAGATTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| 3UTR-3UTR GCA 90 bp | CAAATCTCTGACACACCTGCTACTATTTCTCTACCTAAAGGGATGACTGTATGTATTGAAAGCTGTTGTTaGATTGCAAGAATTTGGTGG | + |
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Preference number: 2 (lower is better) Translates to: QISDTPATISLPKGMTVCIESCC*IARIWW Trigger: CCACCAAATTCTTGCAATGCAACAACAGCTTTCAAT...ACATACAGTCATCCCTTTAGGTAGAGAAATAGTAGCAGGTGTGTCAGAGATTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| 3UTR-3UTR TCA 90 bp | AGCTGTTGTTGCATTGCAAGAATTTGGTGGTTTTGTGCGTTTCAAACTTTCAAACCTCCATGGGTAAAATaGTGTTGTTCACAAACAACA | + |
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Preference number: 2 (lower is better) Translates to: SCCCIARIWWFCAFQTFKPPWVK*CCSQTT Trigger: TGTTGTTTGTGAACAACATCATTTTACCCATGGAGG...TTTGAAAGTTTGAAACGCACAAAACCACCAAATTCTTGCAATGCAACAACAGCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| 3UTR-3UTR GCA 90 bp | CAAATCTCTGACACACCTGCTACTATTTCTCTACCTAAAGGGATGACTGTATGTAATTTGGTGGTTTTGTaGGTTTCAAACTTTCAAAGC | + |
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Preference number: 2 (lower is better) Translates to: QISDTPATISLPKGMTVCNLVVL*VSNFQS Trigger: GCTTTGAAAGTTTGAAACGCACAAAACCACCAAATT...ACATACAGTCATCCCTTTAGGTAGAGAAATAGTAGCAGGTGTGTCAGAGATTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| 3UTR-3UTR GCA 90 bp | AGCTGTTGTTGCATTGCAAGAATTTGGTGGTTTTGTGCGTTTCAAACTTTCAAAAGAGTTGAAACACAATaGCAACATAACAAAGCCTTT | + |
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Preference number: 2 (lower is better) Translates to: SCCCIARIWWFCAFQTFKRVETQ*QHNKAF Trigger: AAAGGCTTTGTTATGTTGGCATTGTGTTTCAACTCT...TTTGAAAGTTTGAAACGCACAAAACCACCAAATTCTTGCAATGCAACAACAGCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| 3UTR TCA 72 bp | CTAGCCCAGCAAGGAGCACTCTCCATGGGCTACCTGTaGGAGGTAACTGGGATGGCTGTGGCCACAAAAATG | + |
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Preference number: 3 (lower is better) Translates to: LAQQGALSMGYL*EVTGMAVATKM Trigger: CATTTTTGTGGCCACAGCCATCCCAGTTACCTCTCACAGGTAGCCCATGGAGAGTGCTCCTTGCTGGGCTAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| 3UTR TCA 72 bp | AGGCCCATGGCAGATACGTGTCCTCCATGGGTAAAATaGTGTTGTTCACAAACAACAAAGCACAGTATGAAA | + |
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Preference number: 3 (lower is better) Translates to: RPMADTCPPWVK*CCSQTTKHSMK Trigger: TTTCATACTGTGCTTTGTTGTTTGTGAACAACATCATTTTACCCATGGAGGACACGTATCTGCCATGGGCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| 3UTR GCA 72 bp | ACAAAAGAACATCATGGAAAAATAGGGTTTACTTTATaGCTTTGGGAACTGGAGGGTTCTAGCCCAGCAAGG | + |
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Preference number: 3 (lower is better) Translates to: TKEHHGKIGFTL*LWELEGSSPAR Trigger: CCTTGCTGGGCTAGAACCCTCCAGTTCCCAAAGGCATAAAGTAAACCCTATTTTTCCATGATGTTCTTTTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| 3UTR CCA 72 bp | CAACGAAAAGATGTGGACGTTGTAAACTTTATCGGATaGTACTTCCTCCATTCAGTTATTTTAAATAAATGC | + |
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Preference number: 3 (lower is better) Translates to: QRKDVDVVNFIG*YFLHSVILNKC Trigger: GCATTTATTTAAAATAACTGAATGGAGGAAGTACCATCCGATAAAGTTTACAACGTCCACATCTTTTCGTTG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| CDS-3UTR GCA 90 bp | CAAATCTCTGACACACCTGCTACTATTTCTCTACCTAAAGGGATGACTGTATGTCAGCAGCGACAGCCCTaGGCGGCTGCGGGAGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: QISDTPATISLPKGMTVCQQRQP*AAAGAS Trigger: AGAAGCTCCCGCAGCCGCGCAGGGCTGTCGCTGCTG...ACATACAGTCATCCCTTTAGGTAGAGAAATAGTAGCAGGTGTGTCAGAGATTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| CDS-3UTR GCA 90 bp | CAAATCTCTGACACACCTGCTACTATTTCTCTACCTAAAGGGATGACTGTATGTGGGGGAAAGGGGTTCTaGTGGAGCAGAAACTGGAGC | + |
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Preference number: 4 (lower is better) Translates to: QISDTPATISLPKGMTVCGGKGF*WSRNWS Trigger: GCTCCAGTTTCTGCTCCAGCAGAACCCCTTTCCCCC...ACATACAGTCATCCCTTTAGGTAGAGAAATAGTAGCAGGTGTGTCAGAGATTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| CDS-3UTR TCA 90 bp | AGCTGTTGTTGCATTGCAAGAATTTGGTGGTTTTGTGCGTTTCAAACTTTCAAATGTCCAGGAGGAAGGTaGCCCTGGTGGCTTCTGGAT | + |
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Preference number: 4 (lower is better) Translates to: SCCCIARIWWFCAFQTFKCPGGR*PWWLLD Trigger: ATCCAGAAGCCACCAGGGTCACCTTCCTCCTGGACA...TTTGAAAGTTTGAAACGCACAAAACCACCAAATTCTTGCAATGCAACAACAGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| CDS-3UTR GCA 90 bp | CAAATCTCTGACACACCTGCTACTATTTCTCTACCTAAAGGGATGACTGTATGTGCTGCTCAGTCAGCATaGCAGCCAACCCATCAAGTT | + |
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Preference number: 4 (lower is better) Translates to: QISDTPATISLPKGMTVCAAQSA*QPTHQV Trigger: AACTTGATGGGTTGGCTGGCATGCTGACTGAGCAGC...ACATACAGTCATCCCTTTAGGTAGAGAAATAGTAGCAGGTGTGTCAGAGATTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| CDS-3UTR GCA 90 bp | AGCTGTTGTTGCATTGCAAGAATTTGGTGGTTTTGTGCGTTTCAAACTTTCAAAGTGAGTCTCCTGAGCTaGTCAGTCAGCATGCCAGCC | + |
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Preference number: 4 (lower is better) Translates to: SCCCIARIWWFCAFQTFKVSLLS*SVSMPA Trigger: GGCTGGCATGCTGACTGAGCAGCTCAGGAGACTCAC...TTTGAAAGTTTGAAACGCACAAAACCACCAAATTCTTGCAATGCAACAACAGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| CDS-3UTR CCA 90 bp | CAAATCTCTGACACACCTGCTACTATTTCTCTACCTAAAGGGATGACTGTATGTGGGCCGCTAAGAACTTaGAGCAGGCAGCTTCATAGT | + |
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Preference number: 4 (lower is better) Translates to: QISDTPATISLPKGMTVCGPLRT*SRQLHS Trigger: ACTATGAAGCTGCCTGCTCCAAGTTCTTAGCGGCCC...ACATACAGTCATCCCTTTAGGTAGAGAAATAGTAGCAGGTGTGTCAGAGATTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| CDS-3UTR GCA 90 bp | AGCTGTTGTTGCATTGCAAGAATTTGGTGGTTTTGTGCGTTTCAAACTTTCAAAAGAGCAGCAGCAGGTTaGCAAAGGTCTCTGGGGGAA | + |
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Preference number: 4 (lower is better) Translates to: SCCCIARIWWFCAFQTFKRAAAG*QRSLGE Trigger: TTCCCCCAGAGACCTTTGGCAACCTGCTGCTGCTCT...TTTGAAAGTTTGAAACGCACAAAACCACCAAATTCTTGCAATGCAACAACAGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| CDS-3UTR CCA 90 bp | CAAATCTCTGACACACCTGCTACTATTTCTCTACCTAAAGGGATGACTGTATGTGGAAAGGGGTTCTGCTaGAGCAGAAACTGGAGCTTT | + |
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Preference number: 4 (lower is better) Translates to: QISDTPATISLPKGMTVCGKGFC*SRNWSF Trigger: AAAGCTCCAGTTTCTGCTCCAGCAGAACCCCTTTCC...ACATACAGTCATCCCTTTAGGTAGAGAAATAGTAGCAGGTGTGTCAGAGATTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| CDS-3UTR CCA 90 bp | AGCTGTTGTTGCATTGCAAGAATTTGGTGGTTTTGTGCGTTTCAAACTTTCAAAGTTGCCAAAGGTCTCTaGGGGAAAGGGGTTCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: SCCCIARIWWFCAFQTFKVAKGL*GKGVLL Trigger: CAGCAGAACCCCTTTCCCCCAGAGACCTTTGGCAAC...TTTGAAAGTTTGAAACGCACAAAACCACCAAATTCTTGCAATGCAACAACAGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| CDS-3UTR GCA 90 bp | AGCTGTTGTTGCATTGCAAGAATTTGGTGGTTTTGTGCGTTTCAAACTTTCAAAGTCCAGCTCTTCCTCTaGTCTAGGAGGCATGTCAGT | + |
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Preference number: 4 (lower is better) Translates to: SCCCIARIWWFCAFQTFKVQLFL*SRRHVS Trigger: ACTGACATGCCTCCTAGAGCAGAGGAAGAGCTGGAC...TTTGAAAGTTTGAAACGCACAAAACCACCAAATTCTTGCAATGCAACAACAGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| CDS-3UTR GCA 90 bp | CAAATCTCTGACACACCTGCTACTATTTCTCTACCTAAAGGGATGACTGTATGTCTGATACTCTATGGCTaGCTTGAGGTTGAAAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: QISDTPATISLPKGMTVCLILYG*LEVESF Trigger: GAAGCTTTCAACCTCAAGGCAGCCATAGAGTATCAG...ACATACAGTCATCCCTTTAGGTAGAGAAATAGTAGCAGGTGTGTCAGAGATTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| CDS-3UTR CCA 90 bp | AGCTGTTGTTGCATTGCAAGAATTTGGTGGTTTTGTGCGTTTCAAACTTTCAAAGTTGACCAAACCATCTaGGTCATTCTCCCCTCCACT | + |
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Preference number: 4 (lower is better) Translates to: SCCCIARIWWFCAFQTFKVDQTI*VILPST Trigger: AGTGGAGGGGAGAATGACCCAGATGGTTTGGTCAAC...TTTGAAAGTTTGAAACGCACAAAACCACCAAATTCTTGCAATGCAACAACAGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| CDS-3UTR TCA 90 bp | AGCTGTTGTTGCATTGCAAGAATTTGGTGGTTTTGTGCGTTTCAAACTTTCAAATCAAAGTTTCTCAGCTaGTACTCTATGGCTGCCTTG | + |
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Preference number: 4 (lower is better) Translates to: SCCCIARIWWFCAFQTFKSKFLS*YSMAAL Trigger: CAAGGCAGCCATAGAGTATCAGCTGAGAAACTTTGA...TTTGAAAGTTTGAAACGCACAAAACCACCAAATTCTTGCAATGCAACAACAGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| CDS-3UTR CCA 90 bp | CAAATCTCTGACACACCTGCTACTATTTCTCTACCTAAAGGGATGACTGTATGTAGTCATAGTTTCCTTTaGCACAATACAGGGTTCCTA | + |
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Preference number: 4 (lower is better) Translates to: QISDTPATISLPKGMTVCSHSFL*HNTGFL Trigger: TAGGAACCCTGTATTGTGCCAAAGGAAACTATGACT...ACATACAGTCATCCCTTTAGGTAGAGAAATAGTAGCAGGTGTGTCAGAGATTTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| CDS-3UTR TCA 90 bp | AGCTGTTGTTGCATTGCAAGAATTTGGTGGTTTTGTGCGTTTCAAACTTTCAAAGTATTCTTCCCGGTGTaGATTCTTTCTTCCTCTAAG | + |
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Preference number: 4 (lower is better) Translates to: SCCCIARIWWFCAFQTFKVFFPV*ILSSSK Trigger: CTTAGAGGAAGAAAGAATTCACACCGGGAAGAATAC...TTTGAAAGTTTGAAACGCACAAAACCACCAAATTCTTGCAATGCAACAACAGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| CDS-3UTR GCA 90 bp | CAAATCTCTGACACACCTGCTACTATTTCTCTACCTAAAGGGATGACTGTATGTCAAAGCACTATCATGTaGTTTGACATGTTCTCTAGT | + |
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Preference number: 4 (lower is better) Translates to: QISDTPATISLPKGMTVCQSTIM*FDMFSS Trigger: ACTAGAGAACATGTCAAAGCACATGATAGTGCTTTG...ACATACAGTCATCCCTTTAGGTAGAGAAATAGTAGCAGGTGTGTCAGAGATTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| CDS-3UTR CCA 90 bp | AGCTGTTGTTGCATTGCAAGAATTTGGTGGTTTTGTGCGTTTCAAACTTTCAAATCAGTGAGAGTTTCTTaGGCTACCTCAAAGTTTCTC | + |
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Preference number: 4 (lower is better) Translates to: SCCCIARIWWFCAFQTFKSVRVS*ATSKFL Trigger: GAGAAACTTTGAGGTAGCCCAAGAAACTCTCACTGA...TTTGAAAGTTTGAAACGCACAAAACCACCAAATTCTTGCAATGCAACAACAGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| CDS-3UTR CAA 90 bp | AGCTGTTGTTGCATTGCAAGAATTTGGTGGTTTTGTGCGTTTCAAACTTTCAAATTCATCAGAGCCTGGTaGTGGAGGGTTACGGGGTCC | + |
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Preference number: 5 (lower is better) Translates to: SCCCIARIWWFCAFQTFKFIRAW*WRVTGS Trigger: GGACCCCGTAACCCTCCACAACCAGGCTCTGATGAA...TTTGAAAGTTTGAAACGCACAAAACCACCAAATTCTTGCAATGCAACAACAGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| CDS-3UTR CAA 90 bp | CAAATCTCTGACACACCTGCTACTATTTCTCTACCTAAAGGGATGACTGTATGTAGCAGACAACCCATGTaGACCAAACCATCTGGGTCA | + |
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Preference number: 5 (lower is better) Translates to: QISDTPATISLPKGMTVCSRQPM*TKPSGS Trigger: TGACCCAGATGGTTTGGTCAACATGGGTTGTCTGCT...ACATACAGTCATCCCTTTAGGTAGAGAAATAGTAGCAGGTGTGTCAGAGATTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| CDS-3UTR CAA 90 bp | AGCTGTTGTTGCATTGCAAGAATTTGGTGGTTTTGTGCGTTTCAAACTTTCAAAACCGAGTTCTGGGTGTaGACGGATGCCACGCTCAAT | + |
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Preference number: 5 (lower is better) Translates to: SCCCIARIWWFCAFQTFKTEFWV*TDATLN Trigger: ATTGAGCGTGGCATCCGTCAACACCCAGAACTCGGT...TTTGAAAGTTTGAAACGCACAAAACCACCAAATTCTTGCAATGCAACAACAGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| CDS-3UTR CAA 90 bp | CAAATCTCTGACACACCTGCTACTATTTCTCTACCTAAAGGGATGACTGTATGTATGGCTGCCTTGAGGTaGAAAGCTTCAATCAGAGCA | + |
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Preference number: 5 (lower is better) Translates to: QISDTPATISLPKGMTVCMAALR*KASIRA Trigger: TGCTCTGATTGAAGCTTTCAACCTCAAGGCAGCCAT...ACATACAGTCATCCCTTTAGGTAGAGAAATAGTAGCAGGTGTGTCAGAGATTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| CDS-3UTR CAA 90 bp | CAAATCTCTGACACACCTGCTACTATTTCTCTACCTAAAGGGATGACTGTATGTGTTATGCCTTGCTTCTaGAACTTGCTTAGTGAGTCT | + |
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Preference number: 5 (lower is better) Translates to: QISDTPATISLPKGMTVCVMPCF*NLLSES Trigger: AGACTCACTAAGCAAGTTCAAGAAGCAAGGCATAAC...ACATACAGTCATCCCTTTAGGTAGAGAAATAGTAGCAGGTGTGTCAGAGATTTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| CDS-3UTR CAA 90 bp | CAAATCTCTGACACACCTGCTACTATTTCTCTACCTAAAGGGATGACTGTATGTGCACTATCATGTGCTTaGACATGTTCTCTAGTAAGG | + |
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Preference number: 5 (lower is better) Translates to: QISDTPATISLPKGMTVCALSCA*TCSLVR Trigger: CCTTACTAGAGAACATGTCAAAGCACATGATAGTGC...ACATACAGTCATCCCTTTAGGTAGAGAAATAGTAGCAGGTGTGTCAGAGATTTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| CDS-3UTR CAA 90 bp | AGCTGTTGTTGCATTGCAAGAATTTGGTGGTTTTGTGCGTTTCAAACTTTCAAATACTCTATGGCTGCCTaGAGGTTGAAAGCTTCAATC | + |
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Preference number: 5 (lower is better) Translates to: SCCCIARIWWFCAFQTFKYSMAA*RLKASI Trigger: GATTGAAGCTTTCAACCTCAAGGCAGCCATAGAGTA...TTTGAAAGTTTGAAACGCACAAAACCACCAAATTCTTGCAATGCAACAACAGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| CDS-3UTR CAA 90 bp | CAAATCTCTGACACACCTGCTACTATTTCTCTACCTAAAGGGATGACTGTATGTAGATCTTCTCTACCATaGGGTAATTCTCAAGATTCC | + |
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Preference number: 5 (lower is better) Translates to: QISDTPATISLPKGMTVCRSSLP*GNSQDS Trigger: GGAATCTTGAGAATTACCCAATGGTAGAGAAGATCT...ACATACAGTCATCCCTTTAGGTAGAGAAATAGTAGCAGGTGTGTCAGAGATTTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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| CDS GCA 72 bp | CTGGTTGTGGAGGGTTACGGGGTCCAGCTCTTCCTCTaGTCTAGGAGGCATGTCAGTGAGAGTTTCTTGGGC | + |
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Preference number: 6 (lower is better) Translates to: LVVEGYGVQLFL*SRRHVSESFLG Trigger: GCCCAAGAAACTCTCACTGACATGCCTCCTAGAGCAGAGGAAGAGCTGGACCCCGTAACCCTCCACAACCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099994.5 |
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