Pregenerated sensors for TTC29 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037101Ensembl transcript IDs: ENSMUST00000049395.15, ENSMUST00000109902.4, ENSMUST00000117845.8
Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCTTATGGATTCACGGGAGGAGTTCCAGAGGTTTCAGAGGGAAGCTaGGGTCTTTCAGTTGCAAGCAAACCAGCAAAGGTTCCTGAGACT | + |
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Preference number: 1 (lower is better) Translates to: PYGFTGGVPEVSEGS*GLSVASKPAKVPET Trigger: AGTCTCAGGAACCTTTGCTGGTTTGCTTGCAACTGAAAGACCGCAGCTTCCCTCTGAAACCTCTGGAACTCCTCCCGTGAATCCATAAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| 3UTR CCA 90 bp | TTGAAAAGGAAGAAAGTCTTTATTCTTGGTAATGTACTACCCTTATaGATTCACGGGAGGAGTTCCAGAGGTTTCAGAGGGAAGCTGCGG | + |
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Preference number: 1 (lower is better) Translates to: LKRKKVFILGNVLPL*IHGRSSRGFRGKLR Trigger: CCGCAGCTTCCCTCTGAAACCTCTGGAACTCCTCCCGTGAATCCATAAGGGTAGTACATTACCAAGAATAAAGACTTTCTTCCTTTTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| 3UTR CCA 90 bp | ACTCGTAAACATTTTGCAATCAGAAACAGTTCAGATTTAAACTCCTaGAGTTCTTGTGGAGTAGCATGTAGGAGGGGACATTCTAAAGTT | + |
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Preference number: 1 (lower is better) Translates to: TRKHFAIRNSSDLNS*SSCGVACRRGHSKV Trigger: AACTTTAGAATGTCCCCTCCTACATGCTACTCCACAAGAACTCCAGGAGTTTAAATCTGAACTGTTTCTGATTGCAAAATGTTTACGAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| 3UTR CAA 90 bp | CGGGAGGAGTTCCAGAGGTTTCAGAGGGAAGCTGCGGTCTTTCAGTaGCAAGCAAACCAGCAAAGGTTCCTGAGACTGAAGGATTTCCCC | + |
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Preference number: 2 (lower is better) Translates to: REEFQRFQREAAVFQ*QANQQRFLRLKDFP Trigger: GGGGAAATCCTTCAGTCTCAGGAACCTTTGCTGGTTTGCTTGCAACTGAAAGACCGCAGCTTCCCTCTGAAACCTCTGGAACTCCTCCCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| 3UTR-3UTR TCA 90 bp | AGGGAAGCTGCGGTCTTTCAGTTGCAAGCAAACCAGCAAAGGTTCCTGAGACTGCTGCTGAGGTTTCCCTaGGATTTTAGCAGATTATCA | + |
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Preference number: 2 (lower is better) Translates to: REAAVFQLQANQQRFLRLLLRFP*DFSRLS Trigger: TGATAATCTGCTAAAATCTCAGGGAAACCTCAGCAG...CAGTCTCAGGAACCTTTGCTGGTTTGCTTGCAACTGAAAGACCGCAGCTTCCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| 3UTR-3UTR GCA 90 bp | TTATTCTTGGTAATGTACTACCCTTATGGATTCACGGGAGGAGTTCCAGAGGTTCTGCGGTCTTTCAGTTaGAAGCAAACCAGCAAAGGT | + |
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Preference number: 2 (lower is better) Translates to: LFLVMYYPYGFTGGVPEVLRSFS*KQTSKG Trigger: ACCTTTGCTGGTTTGCTTGCAACTGAAAGACCGCAG...AACCTCTGGAACTCCTCCCGTGAATCCATAAGGGTAGTACATTACCAAGAATAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| 3UTR-3UTR CAA 90 bp | CAGAGGTTTCAGAGGGAAGCTGCGGTCTTTCAGTTGCAAGCAAACCAGCAAAGGACTGCTCATGGCCCTTaGTGTCTGCTGAGGTTTCCC | + |
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Preference number: 3 (lower is better) Translates to: QRFQREAAVFQLQANQQRTAHGP*CLLRFP Trigger: GGGAAACCTCAGCAGACACAAAGGGCCATGAGCAGT...CCTTTGCTGGTTTGCTTGCAACTGAAAGACCGCAGCTTCCCTCTGAAACCTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| 3UTR GCA 72 bp | TTCACGGGAGGAGTTCCAGAGGTTTCAGAGGGAAGCTaGGGTCTTTCAGTTGCAAGCAAACCAGCAAAGGTT | + |
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Preference number: 3 (lower is better) Translates to: FTGGVPEVSEGS*GLSVASKPAKV Trigger: AACCTTTGCTGGTTTGCTTGCAACTGAAAGACCGCAGCTTCCCTCTGAAACCTCTGGAACTCCTCCCGTGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| 3UTR GCA 72 bp | GCAAATTTAGCAGTGCTTAGCAATACAAGCACAGACTaGTCATGGCCCTTTGTGTCTGCTGAGGTTTCCCTG | + |
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Preference number: 3 (lower is better) Translates to: ANLAVLSNTSTD*SWPFVSAEVSL Trigger: CAGGGAAACCTCAGCAGACACAAAGGGCCATGAGCAGTCTGTGCTTGTATTGCTAAGCACTGCTAAATTTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| 3UTR TCA 72 bp | TACAAGCACAGACTGCTCATGGCCCTTTGTGTCTGCTaGGGTTTCCCTGAGATTTTAGCAGATTATCATGCA | + |
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Preference number: 3 (lower is better) Translates to: YKHRLLMALCVC*GFPEILADYHA Trigger: TGCATGATAATCTGCTAAAATCTCAGGGAAACCTCAGCAGACACAAAGGGCCATGAGCAGTCTGTGCTTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| 3UTR TCA 72 bp | ACTGCTCATGGCCCTTTGTGTCTGCTGAGGTTTCCCTaGGATTTTAGCAGATTATCATGCAGTGTGAAAGAT | + |
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Preference number: 3 (lower is better) Translates to: TAHGPLCLLRFP*DFSRLSCSVKD Trigger: ATCTTTCACACTGCATGATAATCTGCTAAAATCTCAGGGAAACCTCAGCAGACACAAAGGGCCATGAGCAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| 3UTR CCA 72 bp | AAGAAAGTCTTTATTCTTGGTAATGTACTACCCTTATaGATTCACGGGAGGAGTTCCAGAGGTTTCAGAGGG | + |
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Preference number: 3 (lower is better) Translates to: KKVFILGNVLPL*IHGRSSRGFRG Trigger: CCCTCTGAAACCTCTGGAACTCCTCCCGTGAATCCATAAGGGTAGTACATTACCAAGAATAAAGACTTTCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| 3UTR CCA 72 bp | CATTTTGCAATCAGAAACAGTTCAGATTTAAACTCCTaGAGTTCTTGTGGAGTAGCATGTAGGAGGGGACAT | + |
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Preference number: 3 (lower is better) Translates to: HFAIRNSSDLNS*SSCGVACRRGH Trigger: ATGTCCCCTCCTACATGCTACTCCACAAGAACTCCAGGAGTTTAAATCTGAACTGTTTCTGATTGCAAAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR GCA 90 bp | AGGGAAGCTGCGGTCTTTCAGTTGCAAGCAAACCAGCAAAGGTTCCTGAGACTGTCCAGAGGCCTCTGCTaGCAGAAGAGGGACTGTGCC | + |
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Preference number: 4 (lower is better) Translates to: REAAVFQLQANQQRFLRLSRGLC*QKRDCA Trigger: GGCACAGTCCCTCTTCTGGCAGCAGAGGCCTCTGGA...CAGTCTCAGGAACCTTTGCTGGTTTGCTTGCAACTGAAAGACCGCAGCTTCCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR GCA 90 bp | ACAAGCACAGACTGCTCATGGCCCTTTGTGTCTGCTGAGGTTTCCCTGAGATTTGTCTCCCCTTGGCTCTaGAGGGCCTTGGCGATAGCC | + |
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Preference number: 4 (lower is better) Translates to: TSTDCSWPFVSAEVSLRFVSPWL*RALAIA Trigger: GGCTATCGCCAAGGCCCTGCAGAGCCAAGGGGAGAC...AAATCTCAGGGAAACCTCAGCAGACACAAAGGGCCATGAGCAGTCTGTGCTTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR GCA 90 bp | AGCAATACAAGCACAGACTGCTCATGGCCCTTTGTGTCTGCTGAGGTTTCCCTGTCCTCCAGAGGCCTCTaGTGCCAGAAGAGGGACTGT | + |
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Preference number: 4 (lower is better) Translates to: SNTSTDCSWPFVSAEVSLSSRGL*CQKRDC Trigger: ACAGTCCCTCTTCTGGCAGCAGAGGCCTCTGGAGGA...CAGGGAAACCTCAGCAGACACAAAGGGCCATGAGCAGTCTGTGCTTGTATTGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR TCA 90 bp | AATGTACTACCCTTATGGATTCACGGGAGGAGTTCCAGAGGTTTCAGAGGGAAGAGGACAGCAGGCAGTTaGGGCCATTCGAGTCGGCAG | + |
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Preference number: 4 (lower is better) Translates to: NVLPLWIHGRSSRGFRGKRTAGS*GHSSRQ Trigger: CTGCCGACTCGAATGGCCTCAACTGCCTGCTGTCCT...CTTCCCTCTGAAACCTCTGGAACTCCTCCCGTGAATCCATAAGGGTAGTACATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR CCA 90 bp | AGGGAAGCTGCGGTCTTTCAGTTGCAAGCAAACCAGCAAAGGTTCCTGAGACTGTCGGTGAAGGACTTGTaGAACCCATCTCGCAGCATG | + |
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Preference number: 4 (lower is better) Translates to: REAAVFQLQANQQRFLRLSVKDL*NPSRSM Trigger: CATGCTGCGAGATGGGTTCCACAAGTCCTTCACCGA...CAGTCTCAGGAACCTTTGCTGGTTTGCTTGCAACTGAAAGACCGCAGCTTCCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR CCA 90 bp | CTTGGTAATGTACTACCCTTATGGATTCACGGGAGGAGTTCCAGAGGTTTCAGATCTGTTGTCTCCCCTTaGCTCTGCAGGGCCTTGGCG | + |
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Preference number: 4 (lower is better) Translates to: LGNVLPLWIHGRSSRGFRSVVSP*LCRALA Trigger: CGCCAAGGCCCTGCAGAGCCAAGGGGAGACAACAGA...TCTGAAACCTCTGGAACTCCTCCCGTGAATCCATAAGGGTAGTACATTACCAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR GCA 90 bp | CAGAGGTTTCAGAGGGAAGCTGCGGTCTTTCAGTTGCAAGCAAACCAGCAAAGGCCACTGTTCCATCAGTaGAAAGAGCTCGGTGAAGGA | + |
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Preference number: 4 (lower is better) Translates to: QRFQREAAVFQLQANQQRPLFHQ*KELGEG Trigger: TCCTTCACCGAGCTCTTTGCACTGATGGAACAGTGG...CCTTTGCTGGTTTGCTTGCAACTGAAAGACCGCAGCTTCCCTCTGAAACCTCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR GCA 90 bp | ATTCTTGGTAATGTACTACCCTTATGGATTCACGGGAGGAGTTCCAGAGGTTTCCCAGAAGAGGGACTGTaGCTTCGCAGCTTCCCGGAG | + |
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Preference number: 4 (lower is better) Translates to: ILGNVLPLWIHGRSSRGFPEEGL*LRSFPE Trigger: CTCCGGGAAGCTGCGAAGGCACAGTCCCTCTTCTGG...GAAACCTCTGGAACTCCTCCCGTGAATCCATAAGGGTAGTACATTACCAAGAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR GCA 90 bp | AGGGAAGCTGCGGTCTTTCAGTTGCAAGCAAACCAGCAAAGGTTCCTGAGACTGGCATGTCCACGCAGATaGTCTTCTTGTATGAGTTCC | + |
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Preference number: 4 (lower is better) Translates to: REAAVFQLQANQQRFLRLACPRR*SSCMSS Trigger: GGAACTCATACAAGAAGAGCATCTGCGTGGACATGC...CAGTCTCAGGAACCTTTGCTGGTTTGCTTGCAACTGAAAGACCGCAGCTTCCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR CCA 90 bp | AGGGAAGCTGCGGTCTTTCAGTTGCAAGCAAACCAGCAAAGGTTCCTGAGACTGTTGTATGAGTTCCTGTaGGCAGCCACCTCTTCTTTC | + |
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Preference number: 4 (lower is better) Translates to: REAAVFQLQANQQRFLRLLYEFL*AATSSF Trigger: GAAAGAAGAGGTGGCTGCCCACAGGAACTCATACAA...CAGTCTCAGGAACCTTTGCTGGTTTGCTTGCAACTGAAAGACCGCAGCTTCCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| 3UTR CAA 72 bp | TTCCAGAGGTTTCAGAGGGAAGCTGCGGTCTTTCAGTaGCAAGCAAACCAGCAAAGGTTCCTGAGACTGAAG | + |
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Preference number: 4 (lower is better) Translates to: FQRFQREAAVFQ*QANQQRFLRLK Trigger: CTTCAGTCTCAGGAACCTTTGCTGGTTTGCTTGCAACTGAAAGACCGCAGCTTCCCTCTGAAACCTCTGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR TCA 90 bp | CTTGGTAATGTACTACCCTTATGGATTCACGGGAGGAGTTCCAGAGGTTTCAGATGTCCTCTTTCTCTTTaGTCAACTGGGCCCTTGGGA | + |
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Preference number: 4 (lower is better) Translates to: LGNVLPLWIHGRSSRGFRCPLSL*STGPLG Trigger: TCCCAAGGGCCCAGTTGATCAAAGAGAAAGAGGACA...TCTGAAACCTCTGGAACTCCTCCCGTGAATCCATAAGGGTAGTACATTACCAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR CCA 90 bp | ACTGTAATCTTCTTTTTACAACTCCCTATCAGCTGTTACGTGCTCCTGTCTAATTCTAGCTTGTCCGGCTaGTCCTCCAGAGGCCTCTGC | + |
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Preference number: 4 (lower is better) Translates to: TVIFFLQLPISCYVLLSNSSLSG*SSRGLC Trigger: GCAGAGGCCTCTGGAGGACCAGCCGGACAAGCTAGA...ATTAGACAGGAGCACGTAACAGCTGATAGGGAGTTGTAAAAAGAAGATTACAGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR TCA 90 bp | CAGAGGTTTCAGAGGGAAGCTGCGGTCTTTCAGTTGCAAGCAAACCAGCAAAGGTCAGCTTTGATCAGCTaGGCAATATTAAAACACCGT | + |
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Preference number: 4 (lower is better) Translates to: QRFQREAAVFQLQANQQRSALIS*AILKHR Trigger: ACGGTGTTTTAATATTGCTCAGCTGATCAAAGCTGA...CCTTTGCTGGTTTGCTTGCAACTGAAAGACCGCAGCTTCCCTCTGAAACCTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR GCA 90 bp | TCTTTTTACAACTCCCTATCAGCTGTTACGTGCTCCTGTCTAATGAGGTCTAAGTGCTTCATAGTGCTCTaGAGCCTTCAGGAGCTCACC | + |
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Preference number: 4 (lower is better) Translates to: SFYNSLSAVTCSCLMRSKCFIVL*SLQELT Trigger: GGTGAGCTCCTGAAGGCTGCAGAGCACTATGAAGCA...CTTAGACCTCATTAGACAGGAGCACGTAACAGCTGATAGGGAGTTGTAAAAAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR TCA 90 bp | ACACATAAAGCAAATTTAGCAGTGCTTAGCAATACAAGCACAGACTGCTCATGGGATGCTCTTCTTGTATaGGTTCCTGTGGGCAGCCAC | + |
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Preference number: 4 (lower is better) Translates to: THKANLAVLSNTSTDCSWDALLV*VPVGSH Trigger: GTGGCTGCCCACAGGAACTCATACAAGAAGAGCATC...CCATGAGCAGTCTGTGCTTGTATTGCTAAGCACTGCTAAATTTGCTTTATGTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR TCA 90 bp | GCTTGCCATAGTTACGGCAGCACAAAATTCAATAAAGACAACTGTAATCTTCTTCACAGGCCACCAAGTTaGGAAGCTGGCCCGTACCAT | + |
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Preference number: 4 (lower is better) Translates to: ACHSYGSTKFNKDNCNLLHRPPS*EAGPYH Trigger: ATGGTACGGGCCAGCTTCTCAACTTGGTGGCCTGTG...AAGAAGATTACAGTTGTCTTTATTGAATTTTGTGCTGCCGTAACTATGGCAAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR TCA 90 bp | TTATTCTTGGTAATGTACTACCCTTATGGATTCACGGGAGGAGTTCCAGAGGTTGGGTCGTACTCGATTTaGGTTCTAGTCTCCTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: LFLVMYYPYGFTGGVPEVGSYSI*VLVSFQ Trigger: CTGGAAGGAGACTAGAACTCAAATCGAGTACGACCC...AACCTCTGGAACTCCTCCCGTGAATCCATAAGGGTAGTACATTACCAAGAATAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR TCA 90 bp | ACTGTAATCTTCTTTTTACAACTCCCTATCAGCTGTTACGTGCTCCTGTCTAATAAGAAGTCCCATGTGTaGCTCGGCCTCTGCCTCTTT | + |
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Preference number: 4 (lower is better) Translates to: TVIFFLQLPISCYVLLSNKKSHV*LGLCLF Trigger: AAAGAGGCAGAGGCCGAGTCACACATGGGACTTCTT...ATTAGACAGGAGCACGTAACAGCTGATAGGGAGTTGTAAAAAGAAGATTACAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR GCA 90 bp | AGGGAAGCTGCGGTCTTTCAGTTGCAAGCAAACCAGCAAAGGTTCCTGAGACTGATCATATCGAGGCTTTaGAAGTTGTTTCTTGCAATT | + |
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Preference number: 4 (lower is better) Translates to: REAAVFQLQANQQRFLRLIISRL*KLFLAI Trigger: AATTGCAAGAAACAACTTGCAAAGCCTCGATATGAT...CAGTCTCAGGAACCTTTGCTGGTTTGCTTGCAACTGAAAGACCGCAGCTTCCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR GCA 90 bp | TTATTCTTGGTAATGTACTACCCTTATGGATTCACGGGAGGAGTTCCAGAGGTTCCATGCTTCTGTCATTaGCTTCTCTGGCTATTTCAG | + |
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Preference number: 4 (lower is better) Translates to: LFLVMYYPYGFTGGVPEVPCFCH*LLWLFQ Trigger: CTGAAATAGCCAGAGAAGGCAATGACAGAAGCATGG...AACCTCTGGAACTCCTCCCGTGAATCCATAAGGGTAGTACATTACCAAGAATAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR TCA 90 bp | TTAAATGCCATGTTCCAGCGAAAAAGTTTACTGCACAGGAAAATTGAAATTCCATGTCCTCTTTCTCTTTaGTCAACTGGGCCCTTGGGA | + |
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Preference number: 4 (lower is better) Translates to: LNAMFQRKSLLHRKIEIPCPLSL*STGPLG Trigger: TCCCAAGGGCCCAGTTGATCAAAGAGAAAGAGGACA...TGGAATTTCAATTTTCCTGTGCAGTAAACTTTTTCGCTGGAACATGGCATTTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117845.8 |
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| CDS-3UTR GCA 90 bp | ACTGTAATCTTCTTTTTACAACTCCCTATCAGCTGTTACGTGCTCCTGTCTAATCTCCAGGTAATTAATTaGTTCTGTTGTCTCCCCTTG | + |
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Preference number: 4 (lower is better) Translates to: TVIFFLQLPISCYVLLSNLQVIN*FCCLPL Trigger: CAAGGGGAGACAACAGAAGCAATTAATTACCTGGAG...ATTAGACAGGAGCACGTAACAGCTGATAGGGAGTTGTAAAAAGAAGATTACAGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR CCA 90 bp | TCTTTTTACAACTCCCTATCAGCTGTTACGTGCTCCTGTCTAATGAGGTCTAAGTTCTTCCTCAGCATCTaGGAGTTGATATATGTTATC | + |
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Preference number: 4 (lower is better) Translates to: SFYNSLSAVTCSCLMRSKFFLSI*ELIYVI Trigger: GATAACATATATCAACTCCCAGATGCTGAGGAAGAA...CTTAGACCTCATTAGACAGGAGCACGTAACAGCTGATAGGGAGTTGTAAAAAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR TCA 90 bp | ACTGTAATCTTCTTTTTACAACTCCCTATCAGCTGTTACGTGCTCCTGTCTAATTCAGCATCTGGGAGTTaGTATATGTTATCTTCTGTG | + |
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Preference number: 4 (lower is better) Translates to: TVIFFLQLPISCYVLLSNSASGS*YMLSSV Trigger: CACAGAAGATAACATATATCAACTCCCAGATGCTGA...ATTAGACAGGAGCACGTAACAGCTGATAGGGAGTTGTAAAAAGAAGATTACAGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR CCA 90 bp | ACTGTAATCTTCTTTTTACAACTCCCTATCAGCTGTTACGTGCTCCTGTCTAATTGTCATTGCCTTCTCTaGCTATTTCAGAAGCTTTTA | + |
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Preference number: 4 (lower is better) Translates to: TVIFFLQLPISCYVLLSNCHCLL*LFQKLL Trigger: TAAAAGCTTCTGAAATAGCCAGAGAAGGCAATGACA...ATTAGACAGGAGCACGTAACAGCTGATAGGGAGTTGTAAAAAGAAGATTACAGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS GCA 90 bp | GTCCGGCTGGTCCTCCAGAGGCCTCTGCTGCCAGAAGAGGGACTGTaGCTTCGCAGCTTCCCGGAGCTTATCCCACTGTTCCATCAGTGC | + |
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Preference number: 5 (lower is better) Translates to: VRLVLQRPLLPEEGL*LRSFPELIPLFHQC Trigger: GCACTGATGGAACAGTGGGATAAGCTCCGGGAAGCTGCGAAGGCACAGTCCCTCTTCTGGCAGCAGAGGCCTCTGGAGGACCAGCCGGAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS TCA 90 bp | CTTCCCGGAGCTTATCCCACTGTTCCATCAGTGCAAAGAGCTCGGTaGAGGACTTGTGGAACCCATCTCGCAGCATGTCCACGCAGATGC | + |
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Preference number: 5 (lower is better) Translates to: LPGAYPTVPSVQRAR*RTCGTHLAACPRRC Trigger: GCATCTGCGTGGACATGCTGCGAGATGGGTTCCACAAGTCCTTCACCGAGCTCTTTGCACTGATGGAACAGTGGGATAAGCTCCGGGAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS TCA 90 bp | AGCCTTCAGGAGCTCACCCTCTTCCTCGAAAAGAAGTCCCATGTGTaGCTCGGCCTCTGCCTCTTTCTTCCCGCCGTCAGCTTTGATCAG | + |
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Preference number: 5 (lower is better) Translates to: SLQELTLFLEKKSHV*LGLCLFLPAVSFDQ Trigger: CTGATCAAAGCTGACGGCGGGAAGAAAGAGGCAGAGGCCGAGTCACACATGGGACTTCTTTTCGAGGAAGAGGGTGAGCTCCTGAAGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS GCA 90 bp | CTGTGCCTTCGCAGCTTCCCGGAGCTTATCCCACTGTTCCATCAGTaGAAAGAGCTCGGTGAAGGACTTGTGGAACCCATCTCGCAGCAT | + |
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Preference number: 5 (lower is better) Translates to: LCLRSFPELIPLFHQ*KELGEGLVEPISQH Trigger: ATGCTGCGAGATGGGTTCCACAAGTCCTTCACCGAGCTCTTTGCACTGATGGAACAGTGGGATAAGCTCCGGGAAGCTGCGAAGGCACAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS-3UTR CAA 90 bp | AGGGAAGCTGCGGTCTTTCAGTTGCAAGCAAACCAGCAAAGGTTCCTGAGACTGCAGGACAGCAGGCAGTaGAGGCCATTCGAGTCGGCA | + |
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Preference number: 5 (lower is better) Translates to: REAAVFQLQANQQRFLRLQDSRQ*RPFESA Trigger: TGCCGACTCGAATGGCCTCAACTGCCTGCTGTCCTG...CAGTCTCAGGAACCTTTGCTGGTTTGCTTGCAACTGAAAGACCGCAGCTTCCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS CCA 90 bp | TATATACCTCCTCATAGTATCCTTTCCTCTCGGCAGCCTCGGCCCTaGTCAGGTAGTGGTAGAAATTGTCTAGCTTGTCCGGCTGGTCCT | + |
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Preference number: 5 (lower is better) Translates to: YIPPHSILSSRQPRP*SGSGRNCLACPAGP Trigger: AGGACCAGCCGGACAAGCTAGACAATTTCTACCACTACCTGACCAGGGCCGAGGCTGCCGAGAGGAAAGGATACTATGAGGAGGTATATA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS TCA 90 bp | TCTGTGGCTCTTCTAGACTCTCCTAGAATCGGGTCGTACTCGATTTaGGTTCTAGTCTCCTTCCAGGACAGCAGGCAGTTGAGGCCATTC | + |
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Preference number: 5 (lower is better) Translates to: SVALLDSPRIGSYSI*VLVSFQDSRQLRPF Trigger: GAATGGCCTCAACTGCCTGCTGTCCTGGAAGGAGACTAGAACTCAAATCGAGTACGACCCGATTCTAGGAGAGTCTAGAAGAGCCACAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS CCA 90 bp | TTATCCCACTGTTCCATCAGTGCAAAGAGCTCGGTGAAGGACTTGTaGAACCCATCTCGCAGCATGTCCACGCAGATGCTCTTCTTGTAT | + |
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Preference number: 5 (lower is better) Translates to: LSHCSISAKSSVKDL*NPSRSMSTQMLFLY Trigger: ATACAAGAAGAGCATCTGCGTGGACATGCTGCGAGATGGGTTCCACAAGTCCTTCACCGAGCTCTTTGCACTGATGGAACAGTGGGATAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS-3UTR CAA 90 bp | TCTTTTTACAACTCCCTATCAGCTGTTACGTGCTCCTGTCTAATGAGGTCTAAGAGCTCGGTGAAGGACTaGTGGAACCCATCTCGCAGC | + |
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Preference number: 5 (lower is better) Translates to: SFYNSLSAVTCSCLMRSKSSVKD*WNPSRS Trigger: GCTGCGAGATGGGTTCCACAAGTCCTTCACCGAGCT...CTTAGACCTCATTAGACAGGAGCACGTAACAGCTGATAGGGAGTTGTAAAAAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR CAA 90 bp | TTATTCTTGGTAATGTACTACCCTTATGGATTCACGGGAGGAGTTCCAGAGGTTTCACAGGCCACCAAGTaGAGAAGCTGGCCCGTACCA | + |
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Preference number: 5 (lower is better) Translates to: LFLVMYYPYGFTGGVPEVSQATK*RSWPVP Trigger: TGGTACGGGCCAGCTTCTCAACTTGGTGGCCTGTGA...AACCTCTGGAACTCCTCCCGTGAATCCATAAGGGTAGTACATTACCAAGAATAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR CAA 90 bp | AGCAATACAAGCACAGACTGCTCATGGCCCTTTGTGTCTGCTGAGGTTTCCCTGTCCATGCTTCTGTCATaGCCTTCTCTGGCTATTTCA | + |
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Preference number: 5 (lower is better) Translates to: SNTSTDCSWPFVSAEVSLSMLLS*PSLAIS Trigger: TGAAATAGCCAGAGAAGGCAATGACAGAAGCATGGA...CAGGGAAACCTCAGCAGACACAAAGGGCCATGAGCAGTCTGTGCTTGTATTGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR CAA 90 bp | AGGGAAGCTGCGGTCTTTCAGTTGCAAGCAAACCAGCAAAGGTTCCTGAGACTGTCGAGGCTTTGCAAGTaGTTTCTTGCAATTGTCACG | + |
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Preference number: 5 (lower is better) Translates to: REAAVFQLQANQQRFLRLSRLCK*FLAIVT Trigger: CGTGACAATTGCAAGAAACAACTTGCAAAGCCTCGA...CAGTCTCAGGAACCTTTGCTGGTTTGCTTGCAACTGAAAGACCGCAGCTTCCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS GCA 90 bp | CAAGTTGTTTCTTGCAATTGTCACGAACTTCTCCAGGTAATTAATTaGTTCTGTTGTCTCCCCTTGGCTCTGCAGGGCCTTGGCGATAGC | + |
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Preference number: 5 (lower is better) Translates to: QVVSCNCHELLQVIN*FCCLPLALQGLGDS Trigger: GCTATCGCCAAGGCCCTGCAGAGCCAAGGGGAGACAACAGAAGCAATTAATTACCTGGAGAAGTTCGTGACAATTGCAAGAAACAACTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS-3UTR CAA 90 bp | AAAGCAAATTTAGCAGTGCTTAGCAATACAAGCACAGACTGCTCATGGCCCTTTCGCGGTGCTGAAAGCTaGTTGGAAGTACTCGGAAGC | + |
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Preference number: 5 (lower is better) Translates to: KANLAVLSNTSTDCSWPFRGAES*LEVLGS Trigger: GCTTCCGAGTACTTCCAACAAGCTTTCAGCACCGCG...AAAGGGCCATGAGCAGTCTGTGCTTGTATTGCTAAGCACTGCTAAATTTGCTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS TCA 90 bp | GATTTTGATGGCCTGTTTGTAGTCTTTGTTTTCCAGCATCCTGTCTaGGAGCAATCTGTAGGTCCTCACGAGACTTTCACAGGCCACCAA | + |
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Preference number: 5 (lower is better) Translates to: DFDGLFVVFVFQHPV*EQSVGPHETFTGHQ Trigger: TTGGTGGCCTGTGAAAGTCTCGTGAGGACCTACAGATTGCTCTCAGACAGGATGCTGGAAAACAAAGACTACAAACAGGCCATCAAAATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS GCA 90 bp | CCTTGCTGTATTGCCCCTTTTCATTGTAGATGTCGCCGAGCATCGTaGATGCTCGAATCATATCGAGGCTTTGCAAGTTGTTTCTTGCAA | + |
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Preference number: 5 (lower is better) Translates to: PCCIAPFHCRCRRAS*MLESYRGFASCFLQ Trigger: TTGCAAGAAACAACTTGCAAAGCCTCGATATGATTCGAGCATGCACGATGCTCGGCGACATCTACAATGAAAAGGGGCAATACAGCAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS-3UTR CAA 90 bp | CATTTTGCAATCAGAAACAGTTCAGATTTAAACTCCTGGAGTTCTTGTGGAGTATTCTGTTGTCTCCCCTaGGCTCTGCAGGGCCTTGGC | + |
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Preference number: 5 (lower is better) Translates to: HFAIRNSSDLNSWSSCGVFCCLP*ALQGLG Trigger: GCCAAGGCCCTGCAGAGCCAAGGGGAGACAACAGAA...TACTCCACAAGAACTCCAGGAGTTTAAATCTGAACTGTTTCTGATTGCAAAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR CAA 90 bp | AATGTACTACCCTTATGGATTCACGGGAGGAGTTCCAGAGGTTTCAGAGGGAAGGGAAGCCTTGCTGTATaGCCCCTTTTCATTGTAGAT | + |
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Preference number: 5 (lower is better) Translates to: NVLPLWIHGRSSRGFRGKGSLAV*PLFIVD Trigger: ATCTACAATGAAAAGGGGCAATACAGCAAGGCTTCC...CTTCCCTCTGAAACCTCTGGAACTCCTCCCGTGAATCCATAAGGGTAGTACATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS GCA 90 bp | GCTGTATTGCCCCTTTTCATTGTAGATGTCGCCGAGCATCGTGCATaGTCGAATCATATCGAGGCTTTGCAAGTTGTTTCTTGCAATTGT | + |
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Preference number: 5 (lower is better) Translates to: AVLPLFIVDVAEHRA*SNHIEALQVVSCNC Trigger: ACAATTGCAAGAAACAACTTGCAAAGCCTCGATATGATTCGAGCATGCACGATGCTCGGCGACATCTACAATGAAAAGGGGCAATACAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS-3UTR CAA 90 bp | AAAGCAAATTTAGCAGTGCTTAGCAATACAAGCACAGACTGCTCATGGCCCTTTACGCAGATGCTCTTCTaGTATGAGTTCCTGTGGGCA | + |
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Preference number: 5 (lower is better) Translates to: KANLAVLSNTSTDCSWPFTQMLF*YEFLWA Trigger: TGCCCACAGGAACTCATACAAGAAGAGCATCTGCGT...AAAGGGCCATGAGCAGTCTGTGCTTGTATTGCTAAGCACTGCTAAATTTGCTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR CAA 90 bp | ACAAGCACAGACTGCTCATGGCCCTTTGTGTCTGCTGAGGTTTCCCTGAGATTTTTTGCAAGTTGTTTCTaGCAATTGTCACGAACTTCT | + |
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Preference number: 5 (lower is better) Translates to: TSTDCSWPFVSAEVSLRFFASCF*QLSRTS Trigger: AGAAGTTCGTGACAATTGCAAGAAACAACTTGCAAA...AAATCTCAGGGAAACCTCAGCAGACACAAAGGGCCATGAGCAGTCTGTGCTTGT 44% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR CAA 90 bp | ACTGTAATCTTCTTTTTACAACTCCCTATCAGCTGTTACGTGCTCCTGTCTAATATGTCCTCTTTCTCTTaGATCAACTGGGCCCTTGGG | + |
|
Preference number: 5 (lower is better) Translates to: TVIFFLQLPISCYVLLSNMSSFS*INWALG Trigger: CCCAAGGGCCCAGTTGATCAAAGAGAAAGAGGACAT...ATTAGACAGGAGCACGTAACAGCTGATAGGGAGTTGTAAAAAGAAGATTACAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS-3UTR CAA 90 bp | GCCATGTTCCAGCGAAAAAGTTTACTGCACAGGAAAATTGAAATTCCAAGAAAGATGTCCTCTTTCTCTTaGATCAACTGGGCCCTTGGG | + |
|
Preference number: 5 (lower is better) Translates to: AMFQRKSLLHRKIEIPRKMSSFS*INWALG Trigger: CCCAAGGGCCCAGTTGATCAAAGAGAAAGAGGACAT...CTTTCTTGGAATTTCAATTTTCCTGTGCAGTAAACTTTTTCGCTGGAACATGGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117845.8 |
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| CDS-3UTR CAA 90 bp | CTTGGTAATGTACTACCCTTATGGATTCACGGGAGGAGTTCCAGAGGTTTCAGACTCAGCATCTGGGAGTaGATATATGTTATCTTCTGT | + |
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Preference number: 5 (lower is better) Translates to: LGNVLPLWIHGRSSRGFRLSIWE*IYVIFC Trigger: ACAGAAGATAACATATATCAACTCCCAGATGCTGAG...TCTGAAACCTCTGGAACTCCTCCCGTGAATCCATAAGGGTAGTACATTACCAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049395.15 |
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| CDS GCA 90 bp | CATCGTGCATGCTCGAATCATATCGAGGCTTTGCAAGTTGTTTCTTaGAATTGTCACGAACTTCTCCAGGTAATTAATTGCTTCTGTTGT | + |
|
Preference number: 5 (lower is better) Translates to: HRACSNHIEALQVVS*NCHELLQVINCFCC Trigger: ACAACAGAAGCAATTAATTACCTGGAGAAGTTCGTGACAATTGCAAGAAACAACTTGCAAAGCCTCGATATGATTCGAGCATGCACGATG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS GCA 72 bp | TCTAGCTTGTCCGGCTGGTCCTCCAGAGGCCTCTGCTaGCAGAAGAGGGACTGTGCCTTCGCAGCTTCCCGG | + |
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Preference number: 6 (lower is better) Translates to: SSLSGWSSRGLC*QKRDCAFAASR Trigger: CCGGGAAGCTGCGAAGGCACAGTCCCTCTTCTGGCAGCAGAGGCCTCTGGAGGACCAGCCGGACAAGCTAGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS GCA 72 bp | GTCCTCCAGAGGCCTCTGCTGCCAGAAGAGGGACTGTaGCTTCGCAGCTTCCCGGAGCTTATCCCACTGTTC | + |
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Preference number: 6 (lower is better) Translates to: VLQRPLLPEEGL*LRSFPELIPLF Trigger: GAACAGTGGGATAAGCTCCGGGAAGCTGCGAAGGCACAGTCCCTCTTCTGGCAGCAGAGGCCTCTGGAGGAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS GCA 72 bp | CGCAGCTTCCCGGAGCTTATCCCACTGTTCCATCAGTaGAAAGAGCTCGGTGAAGGACTTGTGGAACCCATC | + |
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Preference number: 6 (lower is better) Translates to: RSFPELIPLFHQ*KELGEGLVEPI Trigger: GATGGGTTCCACAAGTCCTTCACCGAGCTCTTTGCACTGATGGAACAGTGGGATAAGCTCCGGGAAGCTGCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS GCA 72 bp | ACTTGTGGAACCCATCTCGCAGCATGTCCACGCAGATaGTCTTCTTGTATGAGTTCCTGTGGGCAGCCACCT | + |
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Preference number: 6 (lower is better) Translates to: TCGTHLAACPRR*SSCMSSCGQPP Trigger: AGGTGGCTGCCCACAGGAACTCATACAAGAAGAGCATCTGCGTGGACATGCTGCGAGATGGGTTCCACAAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS GCA 72 bp | ATCCTTCCAGAGCCGTCCGTGTGTCAGTTCATGGAATaGTTCATAGTGCTCTGCAGCCTTCAGGAGCTCACC | + |
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Preference number: 6 (lower is better) Translates to: ILPEPSVCQFME*FIVLCSLQELT Trigger: GGTGAGCTCCTGAAGGCTGCAGAGCACTATGAAGCATTCCATGAACTGACACACGGACGGCTCTGGAAGGAT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS CCA 72 bp | TGTTCCATCAGTGCAAAGAGCTCGGTGAAGGACTTGTaGAACCCATCTCGCAGCATGTCCACGCAGATGCTC | + |
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Preference number: 6 (lower is better) Translates to: CSISAKSSVKDL*NPSRSMSTQML Trigger: GAGCATCTGCGTGGACATGCTGCGAGATGGGTTCCACAAGTCCTTCACCGAGCTCTTTGCACTGATGGAACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS CCA 72 bp | CCTCATAGTATCCTTTCCTCTCGGCAGCCTCGGCCCTaGTCAGGTAGTGGTAGAAATTGTCTAGCTTGTCCG | + |
|
Preference number: 6 (lower is better) Translates to: PHSILSSRQPRP*SGSGRNCLACP Trigger: CGGACAAGCTAGACAATTTCTACCACTACCTGACCAGGGCCGAGGCTGCCGAGAGGAAAGGATACTATGAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS CAA 72 bp | CACTGTTCCATCAGTGCAAAGAGCTCGGTGAAGGACTaGTGGAACCCATCTCGCAGCATGTCCACGCAGATG | + |
|
Preference number: 6 (lower is better) Translates to: HCSISAKSSVKD*WNPSRSMSTQM Trigger: CATCTGCGTGGACATGCTGCGAGATGGGTTCCACAAGTCCTTCACCGAGCTCTTTGCACTGATGGAACAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS CAA 90 bp | TGTCACGAACTTCTCCAGGTAATTAATTGCTTCTGTTGTCTCCCCTaGGCTCTGCAGGGCCTTGGCGATAGCCTCATAGGCTCTCCCCAG | + |
|
Preference number: 6 (lower is better) Translates to: CHELLQVINCFCCLP*ALQGLGDSLIGSPQ Trigger: CTGGGGAGAGCCTATGAGGCTATCGCCAAGGCCCTGCAGAGCCAAGGGGAGACAACAGAAGCAATTAATTACCTGGAGAAGTTCGTGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS CAA 90 bp | CGCGGTGCTGAAAGCTTGTTGGAAGTACTCGGAAGCCTTGCTGTATaGCCCCTTTTCATTGTAGATGTCGCCGAGCATCGTGCATGCTCG | + |
|
Preference number: 6 (lower is better) Translates to: RGAESLLEVLGSLAV*PLFIVDVAEHRACS Trigger: CGAGCATGCACGATGCTCGGCGACATCTACAATGAAAAGGGGCAATACAGCAAGGCTTCCGAGTACTTCCAACAAGCTTTCAGCACCGCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS TCA 72 bp | GCTTATCCCACTGTTCCATCAGTGCAAAGAGCTCGGTaGAGGACTTGTGGAACCCATCTCGCAGCATGTCCA | + |
|
Preference number: 6 (lower is better) Translates to: AYPTVPSVQRAR*RTCGTHLAACP Trigger: TGGACATGCTGCGAGATGGGTTCCACAAGTCCTTCACCGAGCTCTTTGCACTGATGGAACAGTGGGATAAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS CAA 90 bp | AGCTTATCCCACTGTTCCATCAGTGCAAAGAGCTCGGTGAAGGACTaGTGGAACCCATCTCGCAGCATGTCCACGCAGATGCTCTTCTTG | + |
|
Preference number: 6 (lower is better) Translates to: SLSHCSISAKSSVKD*WNPSRSMSTQMLFL Trigger: CAAGAAGAGCATCTGCGTGGACATGCTGCGAGATGGGTTCCACAAGTCCTTCACCGAGCTCTTTGCACTGATGGAACAGTGGGATAAGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS CCA 72 bp | ATGTCCACGCAGATGCTCTTCTTGTATGAGTTCCTGTaGGCAGCCACCTCTTCTTTCGACAGCCCTTTGAAA | + |
|
Preference number: 6 (lower is better) Translates to: MSTQMLFLYEFL*AATSSFDSPLK Trigger: TTTCAAAGGGCTGTCGAAAGAAGAGGTGGCTGCCCACAGGAACTCATACAAGAAGAGCATCTGCGTGGACAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS TCA 72 bp | GGCCTGTTTGTAGTCTTTGTTTTCCAGCATCCTGTCTaGGAGCAATCTGTAGGTCCTCACGAGACTTTCACA | + |
|
Preference number: 6 (lower is better) Translates to: GLFVVFVFQHPV*EQSVGPHETFT Trigger: TGTGAAAGTCTCGTGAGGACCTACAGATTGCTCTCAGACAGGATGCTGGAAAACAAAGACTACAAACAGGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS GCA 72 bp | TCTTGCAATTGTCACGAACTTCTCCAGGTAATTAATTaGTTCTGTTGTCTCCCCTTGGCTCTGCAGGGCCTT | + |
|
Preference number: 6 (lower is better) Translates to: SCNCHELLQVIN*FCCLPLALQGL Trigger: AAGGCCCTGCAGAGCCAAGGGGAGACAACAGAAGCAATTAATTACCTGGAGAAGTTCGTGACAATTGCAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS GCA 72 bp | CCGAGCATCGTGCATGCTCGAATCATATCGAGGCTTTaGAAGTTGTTTCTTGCAATTGTCACGAACTTCTCC | + |
|
Preference number: 6 (lower is better) Translates to: PSIVHARIISRL*KLFLAIVTNFS Trigger: GGAGAAGTTCGTGACAATTGCAAGAAACAACTTGCAAAGCCTCGATATGATTCGAGCATGCACGATGCTCGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS GCA 72 bp | CCCCTTTTCATTGTAGATGTCGCCGAGCATCGTGCATaGTCGAATCATATCGAGGCTTTGCAAGTTGTTTCT | + |
|
Preference number: 6 (lower is better) Translates to: PLFIVDVAEHRA*SNHIEALQVVS Trigger: AGAAACAACTTGCAAAGCCTCGATATGATTCGAGCATGCACGATGCTCGGCGACATCTACAATGAAAAGGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS GCA 72 bp | ATTGCCCCTTTTCATTGTAGATGTCGCCGAGCATCGTaGATGCTCGAATCATATCGAGGCTTTGCAAGTTGT | + |
|
Preference number: 6 (lower is better) Translates to: IAPFHCRCRRAS*MLESYRGFASC Trigger: ACAACTTGCAAAGCCTCGATATGATTCGAGCATGCACGATGCTCGGCGACATCTACAATGAAAAGGGGCAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS CAA 72 bp | GCCGAGCATCGTGCATGCTCGAATCATATCGAGGCTTaGCAAGTTGTTTCTTGCAATTGTCACGAACTTCTC | + |
|
Preference number: 6 (lower is better) Translates to: AEHRACSNHIEA*QVVSCNCHELL Trigger: GAGAAGTTCGTGACAATTGCAAGAAACAACTTGCAAAGCCTCGATATGATTCGAGCATGCACGATGCTCGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS CAA 90 bp | GTAGATGTCGCCGAGCATCGTGCATGCTCGAATCATATCGAGGCTTaGCAAGTTGTTTCTTGCAATTGTCACGAACTTCTCCAGGTAATT | + |
|
Preference number: 6 (lower is better) Translates to: VDVAEHRACSNHIEA*QVVSCNCHELLQVI Trigger: AATTACCTGGAGAAGTTCGTGACAATTGCAAGAAACAACTTGCAAAGCCTCGATATGATTCGAGCATGCACGATGCTCGGCGACATCTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS TCA 72 bp | TCCTGTGGGCAGCCACCTCTTCTTTCGACAGCCCTTTaGAATTCTGTTCCAGGTAATAATCTATGTCCTCTT | + |
|
Preference number: 6 (lower is better) Translates to: SCGQPPLLSTAL*NSVPGNNLCPL Trigger: AAGAGGACATAGATTATTACCTGGAACAGAATTTCAAAGGGCTGTCGAAAGAAGAGGTGGCTGCCCACAGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS TCA 72 bp | GGAGACCTTCTTGTTTCTTCCTCAGCATCTGGGAGTTaGTATATGTTATCTTCTGTGGCTCTTCTAGACTCT | + |
|
Preference number: 6 (lower is better) Translates to: GDLLVSSSASGS*YMLSSVALLDS Trigger: AGAGTCTAGAAGAGCCACAGAAGATAACATATATCAACTCCCAGATGCTGAGGAAGAAACAAGAAGGTCTCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS CAA 72 bp | TGGAGACCTTCTTGTTTCTTCCTCAGCATCTGGGAGTaGATATATGTTATCTTCTGTGGCTCTTCTAGACTC | + |
|
Preference number: 6 (lower is better) Translates to: WRPSCFFLSIWE*IYVIFCGSSRL Trigger: GAGTCTAGAAGAGCCACAGAAGATAACATATATCAACTCCCAGATGCTGAGGAAGAAACAAGAAGGTCTCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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| CDS GCA 72 bp | TGCTCGAATCATATCGAGGCTTTGCAAGTTGTTTCTTaGAATTGTCACGAACTTCTCCAGGTAATTAATTGC | + |
|
Preference number: 6 (lower is better) Translates to: CSNHIEALQVVS*NCHELLQVINC Trigger: GCAATTAATTACCTGGAGAAGTTCGTGACAATTGCAAGAAACAACTTGCAAAGCCTCGATATGATTCGAGCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049395.15 ENSMUST00000109902.4 |
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