RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TTC24 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000051036

Ensembl transcript IDs: ENSMUST00000050258.9

Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp TTTAGGATCATAGGCCCGTGTCACTGTGCCCAGCCATCTCTTTTCCTCCCGCACGACCCCAAAGTCACCTaGGCTAGGAAGTCATTTTTA +
Preference number: 2 (lower is better)
Translates to: FRIIGPCHCAQPSLFLPHDPKVT*ARKSFL
Trigger: TAAAAATGACTTCCTAGCTCAGGTGACTTTGGGGTC...GTGCGGGAGGAAAAGAGATGGCTGGGCACAGTGACACGGGCCTATGATCCTAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
3UTR-3UTR GCA 90 bp CTTCTGTTGTATGACATTCGTGTCTCCAACATGAGAAGGGGACATGGAGAAGCTAAAAGCAAGGGACAGTaGTCACTATTCGTTTCCCAG +
Preference number: 2 (lower is better)
Translates to: LLLYDIRVSNMRRGHGEAKSKGQ*SLFVSQ
Trigger: CTGGGAAACGAATAGTGAGCACTGTCCCTTGCTTTT...AGCTTCTCCATGTCCCCTTCTCATGTTGGAGACACGAATGTCATACAACAGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
3UTR-3UTR TCA 90 bp GCCCAGCCATCTCTTTTCCTCCCGCACTCCTGTGAGGAAATACCTATAAGTGTTTTATCTTCTGTTGTATaGCATTCGTGTCTCCAACAT +
Preference number: 2 (lower is better)
Translates to: AQPSLFLPHSCEEIPISVLSSVV*HSCLQH
Trigger: ATGTTGGAGACACGAATGTCATACAACAGAAGATAA...AACACTTATAGGTATTTCCTCACAGGAGTGCGGGAGGAAAAGAGATGGCTGGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
3UTR-3UTR CCA 90 bp GAAATACCTATAAGTGTTCAGGGTGTGAAGCATGCTCGAAAAATGTCGAAAAATAGCCAGCAGAGTCCTTaGCCTGTCTGTTCAGGAGCA +
Preference number: 2 (lower is better)
Translates to: EIPISVQGVKHARKMSKNSQQSP*PVCSGA
Trigger: TGCTCCTGAACAGACAGGCCAAGGACTCTGCTGGCT...ATTTTTCGACATTTTTCGAGCATGCTTCACACCCTGAACACTTATAGGTATTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
3UTR-3UTR CCA 90 bp TCAGGGTGTGAAGCATGCTCGAAAAATGTCGAAAAATTATCACGGTTATTGTGTGACTTTGGGTATTCATaGGGGACAGTAACTGGAGTG +
Preference number: 2 (lower is better)
Translates to: SGCEACSKNVEKLSRLLCDFGYS*GTVTGV
Trigger: CACTCCAGTTACTGTCCCCCATGAATACCCAAAGTC...ACACAATAACCGTGATAATTTTTCGACATTTTTCGAGCATGCTTCACACCCTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
3UTR-3UTR CAA 90 bp TGTGCCCAGCCATCTCTTTTCCTCCCGCACTCCTGTGAGGAAATACCTATAAGTAAGCCAGCAGAGTCCTaGGCCTGTCTGTTCAGGAGC +
Preference number: 3 (lower is better)
Translates to: CAQPSLFLPHSCEEIPISKPAES*ACLFRS
Trigger: GCTCCTGAACAGACAGGCCAAGGACTCTGCTGGCTT...ACTTATAGGTATTTCCTCACAGGAGTGCGGGAGGAAAAGAGATGGCTGGGCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
3UTR TCA 72 bp GTAACTGGAGTGTGTGCCCTCTTATCTTCTGTTGTATaGCATTCGTGTCTCCAACATGAGAAGGGGACATGG +
Preference number: 3 (lower is better)
Translates to: VTGVCALLSSVV*HSCLQHEKGTW
Trigger: CCATGTCCCCTTCTCATGTTGGAGACACGAATGTCATACAACAGAAGATAAGAGGGCACACACTCCAGTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
3UTR GCA 72 bp CTTTGGGTATTCATGGGGGACAGTAACTGGAGTGTGTaGCCTCTTATCTTCTGTTGTATGACATTCGTGTCT +
Preference number: 3 (lower is better)
Translates to: LWVFMGDSNWSV*PLIFCCMTFVS
Trigger: AGACACGAATGTCATACAACAGAAGATAAGAGGGCACACACTCCAGTTACTGTCCCCCATGAATACCCAAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
3UTR CCA 72 bp AAATTATCACGGTTATTGTGTGACTTTGGGTATTCATaGGGGACAGTAACTGGAGTGTGTGCCCTCTTATCT +
Preference number: 3 (lower is better)
Translates to: KLSRLLCDFGYS*GTVTGVCALLS
Trigger: AGATAAGAGGGCACACACTCCAGTTACTGTCCCCCATGAATACCCAAAGTCACACAATAACCGTGATAATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS-3UTR CCA 90 bp TTTAGGATCATAGGCCCGTGTCACTGTGCCCAGCCATCTCTTTTCCTCCCGCACTCCCAGGCAGCCCTGTaGTCCCCCAGCTGGCTCAGT +
Preference number: 4 (lower is better)
Translates to: FRIIGPCHCAQPSLFLPHSQAAL*SPSWLS
Trigger: ACTGAGCCAGCTGGGGGACCACAGGGCTGCCTGGGA...GTGCGGGAGGAAAAGAGATGGCTGGGCACAGTGACACGGGCCTATGATCCTAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS-3UTR CCA 90 bp ATCATAGGCCCGTGTCACTGTGCCCAGCCATCTCTTTTCCTCCCGCACTCCTGTCATGTTGTCCCAGTCTaGCTGCAGCTGCCCCAAGGC +
Preference number: 4 (lower is better)
Translates to: IIGPCHCAQPSLFLPHSCHVVPV*LQLPQG
Trigger: GCCTTGGGGCAGCTGCAGCCAGACTGGGACAACATG...ACAGGAGTGCGGGAGGAAAAGAGATGGCTGGGCACAGTGACACGGGCCTATGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS-3UTR CCA 90 bp ATAGGCCCGTGTCACTGTGCCCAGCCATCTCTTTTCCTCCCGCACTCCTGTGAGTGCCGAGGGCTTCCTTaGCCCATGTGGATGACCTAC +
Preference number: 4 (lower is better)
Translates to: IGPCHCAQPSLFLPHSCECRGLP*PMWMTY
Trigger: GTAGGTCATCCACATGGGCCAAGGAAGCCCTCGGCA...CTCACAGGAGTGCGGGAGGAAAAGAGATGGCTGGGCACAGTGACACGGGCCTAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS-3UTR TCA 90 bp TTTAGGATCATAGGCCCGTGTCACTGTGCCCAGCCATCTCTTTTCCTCCCGCACCTCATGGCCGCCTTCTaGCGCTTCACCTTCCCACTG +
Preference number: 4 (lower is better)
Translates to: FRIIGPCHCAQPSLFLPHLMAAF*RFTFPL
Trigger: CAGTGGGAAGGTGAAGCGTCAGAAGGCGGCCATGAG...GTGCGGGAGGAAAAGAGATGGCTGGGCACAGTGACACGGGCCTATGATCCTAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS-3UTR GCA 90 bp CTGAGCTTTAGGATCATAGGCCCGTGTCACTGTGCCCAGCCATCTCTTTTCCTCCTAAAGCTGCGACCCTaGTCCCACCGCTGGCCCACA +
Preference number: 4 (lower is better)
Translates to: LSFRIIGPCHCAQPSLFLLKLRP*SHRWPT
Trigger: TGTGGGCCAGCGGTGGGAGCAGGGTCGCAGCTTTAG...GAGGAAAAGAGATGGCTGGGCACAGTGACACGGGCCTATGATCCTAAAGCTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS-3UTR GCA 90 bp ATCATAGGCCCGTGTCACTGTGCCCAGCCATCTCTTTTCCTCCCGCACTCCTGTCAGGAAGGCCTCTACTaGCAGAGGGAACAGTTGGAG +
Preference number: 4 (lower is better)
Translates to: IIGPCHCAQPSLFLPHSCQEGLY*QREQLE
Trigger: CTCCAACTGTTCCCTCTGGCAGTAGAGGCCTTCCTG...ACAGGAGTGCGGGAGGAAAAGAGATGGCTGGGCACAGTGACACGGGCCTATGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS-3UTR CCA 90 bp GCCCAGCCATCTCTTTTCCTCCCGCACTCCTGTGAGGAAATACCTATAAGTGTTCCCTGCTCCCACCGCTaGCCCACAGAGCCATGCAGA +
Preference number: 4 (lower is better)
Translates to: AQPSLFLPHSCEEIPISVPCSHR*PTEPCR
Trigger: TCTGCATGGCTCTGTGGGCCAGCGGTGGGAGCAGGG...AACACTTATAGGTATTTCCTCACAGGAGTGCGGGAGGAAAAGAGATGGCTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS-3UTR TCA 90 bp TTTAGGATCATAGGCCCGTGTCACTGTGCCCAGCCATCTCTTTTCCTCCCGCACGCTTCACCTTCCCACTaGCTCTCCTGGGCATCTTCT +
Preference number: 4 (lower is better)
Translates to: FRIIGPCHCAQPSLFLPHASPSH*LSWASS
Trigger: AGAAGATGCCCAGGAGAGTCAGTGGGAAGGTGAAGC...GTGCGGGAGGAAAAGAGATGGCTGGGCACAGTGACACGGGCCTATGATCCTAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS-3UTR TCA 90 bp TGTCTCCAACATGAGAAGGGGACATGGAGAAGCTCAGTGACCCCAAAGTCACCTCCCCAGCTGGCTCAGTaGAAATGCCAGGCCGCTAAA +
Preference number: 4 (lower is better)
Translates to: CLQHEKGTWRSSVTPKSPPQLAQ*KCQAAK
Trigger: TTTAGCGGCCTGGCATTTTCACTGAGCCAGCTGGGG...AGGTGACTTTGGGGTCACTGAGCTTCTCCATGTCCCCTTCTCATGTTGGAGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS-3UTR TCA 90 bp TGTCTCCAACATGAGAAGGGGACATGGAGAAGCTCAGTGACCCCAAAGTCACCTGCTCGGTTCTGTCTCTaGGGTCCTAACACAGTGGCC +
Preference number: 4 (lower is better)
Translates to: CLQHEKGTWRSSVTPKSPARFCL*GPNTVA
Trigger: GGCCACTGTGTTAGGACCTCAGAGACAGAACCGAGC...AGGTGACTTTGGGGTCACTGAGCTTCTCCATGTCCCCTTCTCATGTTGGAGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS-3UTR GCA 90 bp TGTGCCCAGCCATCTCTTTTCCTCCCGCACTCCTGTGAGGAAATACCTATAAGTTCCTCTGGAAGTTCCTaGCGAGGGCTTCCTTGGCCC +
Preference number: 4 (lower is better)
Translates to: CAQPSLFLPHSCEEIPISSSGSS*RGLPWP
Trigger: GGGCCAAGGAAGCCCTCGGCAGGAACTTCCAGAGGA...ACTTATAGGTATTTCCTCACAGGAGTGCGGGAGGAAAAGAGATGGCTGGGCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS-3UTR CCA 90 bp GCCCAGCCATCTCTTTTCCTCCCGCACTCCTGTGAGGAAATACCTATAAGTGTTACGTCTCCAGTGTCTTaGGCAGCCTGGAGGGCATGC +
Preference number: 4 (lower is better)
Translates to: AQPSLFLPHSCEEIPISVTSPVS*AAWRAC
Trigger: GCATGCCCTCCAGGCTGCCCAAGACACTGGAGACGT...AACACTTATAGGTATTTCCTCACAGGAGTGCGGGAGGAAAAGAGATGGCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS-3UTR CCA 90 bp TTTAGGATCATAGGCCCGTGTCACTGTGCCCAGCCATCTCTTTTCCTCCCGCACATGGAAGATGGGTTGTaGCTCGGTTCTGTCTCTGAG +
Preference number: 4 (lower is better)
Translates to: FRIIGPCHCAQPSLFLPHMEDGL*LGSVSE
Trigger: CTCAGAGACAGAACCGAGCCACAACCCATCTTCCAT...GTGCGGGAGGAAAAGAGATGGCTGGGCACAGTGACACGGGCCTATGATCCTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS-3UTR CCA 90 bp TGTGCCCAGCCATCTCTTTTCCTCCCGCACTCCTGTGAGGAAATACCTATAAGTTGGATGCGTGTCCTCTaGAAGTTCCTGCCGAGGGCT +
Preference number: 4 (lower is better)
Translates to: CAQPSLFLPHSCEEIPISWMRVL*KFLPRA
Trigger: AGCCCTCGGCAGGAACTTCCAGAGGACACGCATCCA...ACTTATAGGTATTTCCTCACAGGAGTGCGGGAGGAAAAGAGATGGCTGGGCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS-3UTR GCA 90 bp TGTCTCCAACATGAGAAGGGGACATGGAGAAGCTCAGTGACCCCAAAGTCACCTCTCCTGGGCATCTTCTaGACTACTTTGTACCCTGGC +
Preference number: 4 (lower is better)
Translates to: CLQHEKGTWRSSVTPKSPLLGIF*TTLYPG
Trigger: GCCAGGGTACAAAGTAGTGCAGAAGATGCCCAGGAG...AGGTGACTTTGGGGTCACTGAGCTTCTCCATGTCCCCTTCTCATGTTGGAGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS-3UTR TCA 90 bp TTTAGGATCATAGGCCCGTGTCACTGTGCCCAGCCATCTCTTTTCCTCCCGCACGTCATTCCAAGATTTTaGAGCACTGTAGCCTGCTCT +
Preference number: 4 (lower is better)
Translates to: FRIIGPCHCAQPSLFLPHVIPRF*STVACS
Trigger: AGAGCAGGCTACAGTGCTTCAAAATCTTGGAATGAC...GTGCGGGAGGAAAAGAGATGGCTGGGCACAGTGACACGGGCCTATGATCCTAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS-3UTR TCA 90 bp CTTCTGTTGTATGACATTCGTGTCTCCAACATGAGAAGGGGACATGGAGAAGCTCTTGCAGCCTTCTGGTaGAACTCCTGGGCTTCCCAA +
Preference number: 4 (lower is better)
Translates to: LLLYDIRVSNMRRGHGEALAAFW*NSWASQ
Trigger: TTGGGAAGCCCAGGAGTTTCACCAGAAGGCTGCAAG...AGCTTCTCCATGTCCCCTTCTCATGTTGGAGACACGAATGTCATACAACAGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS-3UTR GCA 90 bp TGTGCCCAGCCATCTCTTTTCCTCCCGCACTCCTGTGAGGAAATACCTATAAGTGGGCTTCCCAATAGTTaGCAAGGACATTGTGGGTCA +
Preference number: 4 (lower is better)
Translates to: CAQPSLFLPHSCEEIPISGLPNS*QGHCGS
Trigger: TGACCCACAATGTCCTTGGCAACTATTGGGAAGCCC...ACTTATAGGTATTTCCTCACAGGAGTGCGGGAGGAAAAGAGATGGCTGGGCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS-3UTR CCA 90 bp CTCCTCCCCAAAGCCCATACAAGTGTCTATCGGGAAGTTCCTGTAGAGGTAAGTCACTACTTTGTACCCTaGCTGAGGTCTTTGCCTTCC +
Preference number: 4 (lower is better)
Translates to: LLPKAHTSVYREVPVEVSHYFVP*LRSLPS
Trigger: GGAAGGCAAAGACCTCAGCCAGGGTACAAAGTAGTG...ACTTACCTCTACAGGAACTTCCCGATAGACACTTGTATGGGCTTTGGGGAGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS-3UTR GCA 90 bp TCAGGGTGTGAAGCATGCTCGAAAAATGTCGAAAAATTATCACGGTTATTGTGTCACAGGGGTAGGGCCTaGAGGAAGGCCTCTACTGCC +
Preference number: 4 (lower is better)
Translates to: SGCEACSKNVEKLSRLLCHRGRA*RKASTA
Trigger: GGCAGTAGAGGCCTTCCTGCAGGCCCTACCCCTGTG...ACACAATAACCGTGATAATTTTTCGACATTTTTCGAGCATGCTTCACACCCTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS-3UTR CCA 90 bp TATAAGTGTTCAGGGTGTGAAGCATGCTCGAAAAATGTCGAAAAATTATCACGGACTTGGGCCTCCAGATaGAAGATGGGTTGTGGCTCG +
Preference number: 4 (lower is better)
Translates to: YKCSGCEACSKNVEKLSRTWASR*KMGCGS
Trigger: CGAGCCACAACCCATCTTCCATCTGGAGGCCCAAGT...CCGTGATAATTTTTCGACATTTTTCGAGCATGCTTCACACCCTGAACACTTATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS-3UTR CCA 90 bp TATAAGTGTTCAGGGTGTGAAGCATGCTCGAAAAATGTCGAAAAATTATCACGGGATATTCCTCTCCACTaGGACTTGGGCCTCCAGATG +
Preference number: 4 (lower is better)
Translates to: YKCSGCEACSKNVEKLSRDIPLH*DLGLQM
Trigger: CATCTGGAGGCCCAAGTCCCAGTGGAGAGGAATATC...CCGTGATAATTTTTCGACATTTTTCGAGCATGCTTCACACCCTGAACACTTATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS GCA 90 bp AGCACTGTAGCCTGCTCTGATGGCTGTCGACACAGGGGTAGGGCCTaGAGGAAGGCCTCTACTGCCAGAGGGAACAGTTGGAGTTGGAAG +
Preference number: 5 (lower is better)
Translates to: STVACSDGCRHRGRA*RKASTARGNSWSWK
Trigger: CTTCCAACTCCAACTGTTCCCTCTGGCAGTAGAGGCCTTCCTGCAGGCCCTACCCCTGTGTCGACAGCCATCAGAGCAGGCTACAGTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS GCA 90 bp ATAGTATTTCAAGGCCTGGTCATGTTGTCCCAGTCTGGCTGCAGCTaGCCCAAGGCCCTCACACGCCTGCCACTGTCCCTTCACGTCTCC +
Preference number: 5 (lower is better)
Translates to: IVFQGLVMLSQSGCS*PKALTRLPLSLHVS
Trigger: GGAGACGTGAAGGGACAGTGGCAGGCGTGTGAGGGCCTTGGGGCAGCTGCAGCCAGACTGGGACAACATGACCAGGCCTTGAAATACTAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS CCA 90 bp GCGCTTCCTTATAGTATTTCAAGGCCTGGTCATGTTGTCCCAGTCTaGCTGCAGCTGCCCCAAGGCCCTCACACGCCTGCCACTGTCCCT +
Preference number: 5 (lower is better)
Translates to: ALPYSISRPGHVVPV*LQLPQGPHTPATVP
Trigger: AGGGACAGTGGCAGGCGTGTGAGGGCCTTGGGGCAGCTGCAGCCAGACTGGGACAACATGACCAGGCCTTGAAATACTATAAGGAAGCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS-3UTR CAA 90 bp ATCATAGGCCCGTGTCACTGTGCCCAGCCATCTCTTTTCCTCCCGCACTCCTGTCAAGGCCTGGTCATGTaGTCCCAGTCTGGCTGCAGC +
Preference number: 5 (lower is better)
Translates to: IIGPCHCAQPSLFLPHSCQGLVM*SQSGCS
Trigger: GCTGCAGCCAGACTGGGACAACATGACCAGGCCTTG...ACAGGAGTGCGGGAGGAAAAGAGATGGCTGGGCACAGTGACACGGGCCTATGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS GCA 90 bp TTCCTTATAGTATTTCAAGGCCTGGTCATGTTGTCCCAGTCTGGCTaGAGCTGCCCCAAGGCCCTCACACGCCTGCCACTGTCCCTTCAC +
Preference number: 5 (lower is better)
Translates to: FLIVFQGLVMLSQSG*SCPKALTRLPLSLH
Trigger: GTGAAGGGACAGTGGCAGGCGTGTGAGGGCCTTGGGGCAGCTGCAGCCAGACTGGGACAACATGACCAGGCCTTGAAATACTATAAGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS-3UTR CAA 90 bp CTGAGCTTTAGGATCATAGGCCCGTGTCACTGTGCCCAGCCATCTCTTTTCCTCCTGCCGAGGGCTTCCTaGGCCCATGTGGATGACCTA +
Preference number: 5 (lower is better)
Translates to: LSFRIIGPCHCAQPSLFLLPRAS*AHVDDL
Trigger: TAGGTCATCCACATGGGCCAAGGAAGCCCTCGGCAG...GAGGAAAAGAGATGGCTGGGCACAGTGACACGGGCCTATGATCCTAAAGCTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS GCA 90 bp GCACTACTTTGTACCCTGGCTGAGGTCTTTGCCTTCCGTGAAGTCTaGAGCTTTCCAGGAGCAGAGGGCAAGAAACGAGCCTGGGCTATC +
Preference number: 5 (lower is better)
Translates to: ALLCTLAEVFAFREV*SFPGAEGKKRAWAI
Trigger: GATAGCCCAGGCTCGTTTCTTGCCCTCTGCTCCTGGAAAGCTGCAGACTTCACGGAAGGCAAAGACCTCAGCCAGGGTACAAAGTAGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS CCA 90 bp ATTCCTCTCCACTGGGACTTGGGCCTCCAGATGGAAGATGGGTTGTaGCTCGGTTCTGTCTCTGAGGTCCTAACACAGTGGCCGTGTTCA +
Preference number: 5 (lower is better)
Translates to: IPLHWDLGLQMEDGL*LGSVSEVLTQWPCS
Trigger: TGAACACGGCCACTGTGTTAGGACCTCAGAGACAGAACCGAGCCACAACCCATCTTCCATCTGGAGGCCCAAGTCCCAGTGGAGAGGAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS-3UTR CAA 90 bp CTGAGCTTTAGGATCATAGGCCCGTGTCACTGTGCCCAGCCATCTCTTTTCCTCCCTCTCCACTGGGACTaGGGCCTCCAGATGGAAGAT +
Preference number: 5 (lower is better)
Translates to: LSFRIIGPCHCAQPSLFLPLHWD*GLQMED
Trigger: ATCTTCCATCTGGAGGCCCAAGTCCCAGTGGAGAGG...GAGGAAAAGAGATGGCTGGGCACAGTGACACGGGCCTATGATCCTAAAGCTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS TCA 90 bp TGTCCTCTGGAAGTTCCTGCCGAGGGCTTCCTTGGCCCATGTGGATaGCCTACTGACTCGGAGCTTCTTGGGTGCTATGATGAAGGGATA +
Preference number: 5 (lower is better)
Translates to: CPLEVPAEGFLGPCG*PTDSELLGCYDEGI
Trigger: TATCCCTTCATCATAGCACCCAAGAAGCTCCGAGTCAGTAGGTCATCCACATGGGCCAAGGAAGCCCTCGGCAGGAACTTCCAGAGGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS CCA 90 bp CTTCCCACTGACTCTCCTGGGCATCTTCTGCACTACTTTGTACCCTaGCTGAGGTCTTTGCCTTCCGTGAAGTCTGCAGCTTTCCAGGAG +
Preference number: 5 (lower is better)
Translates to: LPTDSPGHLLHYFVP*LRSLPSVKSAAFQE
Trigger: CTCCTGGAAAGCTGCAGACTTCACGGAAGGCAAAGACCTCAGCCAGGGTACAAAGTAGTGCAGAAGATGCCCAGGAGAGTCAGTGGGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS CCA 90 bp CTTCTTGGGTGCTATGATGAAGGGATATTCCTCTCCACTGGGACTTaGGCCTCCAGATGGAAGATGGGTTGTGGCTCGGTTCTGTCTCTG +
Preference number: 5 (lower is better)
Translates to: LLGCYDEGIFLSTGT*ASRWKMGCGSVLSL
Trigger: CAGAGACAGAACCGAGCCACAACCCATCTTCCATCTGGAGGCCCAAGTCCCAGTGGAGAGGAATATCCCTTCATCATAGCACCCAAGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS-3UTR CAA 90 bp CCGGCTAAAGAGGCTCCTCCCCAAAGCCCATACAAGTGTCTATCGGGAAGTTCCTGCCAGAGGGAACAGTaGGAGTTGGAAGTAACCCAT +
Preference number: 5 (lower is better)
Translates to: PAKEAPPQSPYKCLSGSSCQREQ*ELEVTH
Trigger: ATGGGTTACTTCCAACTCCAACTGTTCCCTCTGGCA...GGAACTTCCCGATAGACACTTGTATGGGCTTTGGGGAGGAGCCTCTTTAGCCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS CCA 90 bp CATGGCATCTGCCAATTTGGCCACAAGCCGCTCTCGTACAGAACTTaGTTCGTGCTGACACAGGGCCAGCGCTTCCTTATAGTATTTCAA +
Preference number: 5 (lower is better)
Translates to: HGICQFGHKPLSYRT*FVLTQGQRFLIVFQ
Trigger: TTGAAATACTATAAGGAAGCGCTGGCCCTGTGTCAGCACGAACCAAGTTCTGTACGAGAGCGGCTTGTGGCCAAATTGGCAGATGCCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS-3UTR CAA 90 bp CTTCTGTTGTATGACATTCGTGTCTCCAACATGAGAAGGGGACATGGAGAAGCTCAGAGCCATGCAGACTaGCAGCCTTCTGGTGAAACT +
Preference number: 5 (lower is better)
Translates to: LLLYDIRVSNMRRGHGEAQSHAD*QPSGET
Trigger: AGTTTCACCAGAAGGCTGCAAGTCTGCATGGCTCTG...AGCTTCTCCATGTCCCCTTCTCATGTTGGAGACACGAATGTCATACAACAGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS-3UTR CAA 90 bp GAAATACCTATAAGTGTTCAGGGTGTGAAGCATGCTCGAAAAATGTCGAAAAATCACGTCTCCAGTGTCTaGGGCAGCCTGGAGGGCATG +
Preference number: 5 (lower is better)
Translates to: EIPISVQGVKHARKMSKNHVSSV*GSLEGM
Trigger: CATGCCCTCCAGGCTGCCCAAGACACTGGAGACGTG...ATTTTTCGACATTTTTCGAGCATGCTTCACACCCTGAACACTTATAGGTATTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS-3UTR CAA 90 bp TGTGTGCCCTCTTATCTTCTGTTGTATGACATTCGTGTCTCCAACATGAGAAGGGGTCATTCCAAGATTTaGAAGCACTGTAGCCTGCTC +
Preference number: 5 (lower is better)
Translates to: CVPSYLLLYDIRVSNMRRGHSKI*KHCSLL
Trigger: GAGCAGGCTACAGTGCTTCAAAATCTTGGAATGACC...CCTTCTCATGTTGGAGACACGAATGTCATACAACAGAAGATAAGAGGGCACACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS CCA 72 bp GCCAGGCCGCTAAAGCTGCGACCCTGCTCCCACCGCTaGCCCACAGAGCCATGCAGACTTGCAGCCTTCTGG +
Preference number: 6 (lower is better)
Translates to: ARPLKLRPCSHR*PTEPCRLAAFW
Trigger: CCAGAAGGCTGCAAGTCTGCATGGCTCTGTGGGCCAGCGGTGGGAGCAGGGTCGCAGCTTTAGCGGCCTGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS GCA 72 bp AGTCTGGCTGCAGCTGCCCCAAGGCCCTCACACGCCTaGCACTGTCCCTTCACGTCTCCAGTGTCTTGGGCA +
Preference number: 6 (lower is better)
Translates to: SLAAAAPRPSHA*HCPFTSPVSWA
Trigger: TGCCCAAGACACTGGAGACGTGAAGGGACAGTGGCAGGCGTGTGAGGGCCTTGGGGCAGCTGCAGCCAGACT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS GCA 72 bp AGAGGCCGGACTGGATGCGTGTCCTCTGGAAGTTCCTaGCGAGGGCTTCCTTGGCCCATGTGGATGACCTAC +
Preference number: 6 (lower is better)
Translates to: RGRTGCVSSGSS*RGLPWPMWMTY
Trigger: GTAGGTCATCCACATGGGCCAAGGAAGCCCTCGGCAGGAACTTCCAGAGGACACGCATCCAGTCCGGCCTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS TCA 72 bp CAACCCCTCCATCTCCTTCTTCTCATGGCCGCCTTCTaGCGCTTCACCTTCCCACTGACTCTCCTGGGCATC +
Preference number: 6 (lower is better)
Translates to: QPLHLLLLMAAF*RFTFPLTLLGI
Trigger: GATGCCCAGGAGAGTCAGTGGGAAGGTGAAGCGTCAGAAGGCGGCCATGAGAAGAAGGAGATGGAGGGGTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS CCA 72 bp TATAGTATTTCAAGGCCTGGTCATGTTGTCCCAGTCTaGCTGCAGCTGCCCCAAGGCCCTCACACGCCTGCC +
Preference number: 6 (lower is better)
Translates to: YSISRPGHVVPV*LQLPQGPHTPA
Trigger: GGCAGGCGTGTGAGGGCCTTGGGGCAGCTGCAGCCAGACTGGGACAACATGACCAGGCCTTGAAATACTATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS CCA 72 bp CCTGGGCTATCTTCTCCTGAGCCACGAAGGTCCGCATaGCATCTGCCAATTTGGCCACAAGCCGCTCTCGTA +
Preference number: 6 (lower is better)
Translates to: PGLSSPEPRRSA*HLPIWPQAALV
Trigger: TACGAGAGCGGCTTGTGGCCAAATTGGCAGATGCCATGCGGACCTTCGTGGCTCAGGAGAAGATAGCCCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS CAA 72 bp ATGCGTGTCCTCTGGAAGTTCCTGCCGAGGGCTTCCTaGGCCCATGTGGATGACCTACTGACTCGGAGCTTC +
Preference number: 6 (lower is better)
Translates to: MRVLWKFLPRAS*AHVDDLLTRSF
Trigger: GAAGCTCCGAGTCAGTAGGTCATCCACATGGGCCAAGGAAGCCCTCGGCAGGAACTTCCAGAGGACACGCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS CCA 72 bp CACTGGGACTTGGGCCTCCAGATGGAAGATGGGTTGTaGCTCGGTTCTGTCTCTGAGGTCCTAACACAGTGG +
Preference number: 6 (lower is better)
Translates to: HWDLGLQMEDGL*LGSVSEVLTQW
Trigger: CCACTGTGTTAGGACCTCAGAGACAGAACCGAGCCACAACCCATCTTCCATCTGGAGGCCCAAGTCCCAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS CAA 90 bp GATATTCCTCTCCACTGGGACTTGGGCCTCCAGATGGAAGATGGGTaGTGGCTCGGTTCTGTCTCTGAGGTCCTAACACAGTGGCCGTGT +
Preference number: 6 (lower is better)
Translates to: DIPLHWDLGLQMEDG*WLGSVSEVLTQWPC
Trigger: ACACGGCCACTGTGTTAGGACCTCAGAGACAGAACCGAGCCACAACCCATCTTCCATCTGGAGGCCCAAGTCCCAGTGGAGAGGAATATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS TCA 72 bp GAAGTTCCTGCCGAGGGCTTCCTTGGCCCATGTGGATaGCCTACTGACTCGGAGCTTCTTGGGTGCTATGAT +
Preference number: 6 (lower is better)
Translates to: EVPAEGFLGPCG*PTDSELLGCYD
Trigger: ATCATAGCACCCAAGAAGCTCCGAGTCAGTAGGTCATCCACATGGGCCAAGGAAGCCCTCGGCAGGAACTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS CAA 90 bp TCTCCTGGGCATCTTCTGCACTACTTTGTACCCTGGCTGAGGTCTTaGCCTTCCGTGAAGTCTGCAGCTTTCCAGGAGCAGAGGGCAAGA +
Preference number: 6 (lower is better)
Translates to: SPGHLLHYFVPWLRS*PSVKSAAFQEQRAR
Trigger: TCTTGCCCTCTGCTCCTGGAAAGCTGCAGACTTCACGGAAGGCAAAGACCTCAGCCAGGGTACAAAGTAGTGCAGAAGATGCCCAGGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS CAA 90 bp AGGGCTTCCTTGGCCCATGTGGATGACCTACTGACTCGGAGCTTCTaGGGTGCTATGATGAAGGGATATTCCTCTCCACTGGGACTTGGG +
Preference number: 6 (lower is better)
Translates to: RASLAHVDDLLTRSF*GAMMKGYSSPLGLG
Trigger: CCCAAGTCCCAGTGGAGAGGAATATCCCTTCATCATAGCACCCAAGAAGCTCCGAGTCAGTAGGTCATCCACATGGGCCAAGGAAGCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS TCA 72 bp TTCTCATGGCCGCCTTCTGACGCTTCACCTTCCCACTaGCTCTCCTGGGCATCTTCTGCACTACTTTGTACC +
Preference number: 6 (lower is better)
Translates to: FSWPPSDASPSH*LSWASSALLCT
Trigger: GGTACAAAGTAGTGCAGAAGATGCCCAGGAGAGTCAGTGGGAAGGTGAAGCGTCAGAAGGCGGCCATGAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS GCA 72 bp TATCTTCTCCTGAGCCACGAAGGTCCGCATGGCATCTaGCAATTTGGCCACAAGCCGCTCTCGTACAGAACT +
Preference number: 6 (lower is better)
Translates to: YLLLSHEGPHGI*QFGHKPLSYRT
Trigger: AGTTCTGTACGAGAGCGGCTTGTGGCCAAATTGGCAGATGCCATGCGGACCTTCGTGGCTCAGGAGAAGATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS CCA 72 bp TGCCAATTTGGCCACAAGCCGCTCTCGTACAGAACTTaGTTCGTGCTGACACAGGGCCAGCGCTTCCTTATA +
Preference number: 6 (lower is better)
Translates to: CQFGHKPLSYRT*FVLTQGQRFLI
Trigger: TATAAGGAAGCGCTGGCCCTGTGTCAGCACGAACCAAGTTCTGTACGAGAGCGGCTTGTGGCCAAATTGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS CCA 72 bp GACTCTCCTGGGCATCTTCTGCACTACTTTGTACCCTaGCTGAGGTCTTTGCCTTCCGTGAAGTCTGCAGCT +
Preference number: 6 (lower is better)
Translates to: DSPGHLLHYFVP*LRSLPSVKSAA
Trigger: AGCTGCAGACTTCACGGAAGGCAAAGACCTCAGCCAGGGTACAAAGTAGTGCAGAAGATGCCCAGGAGAGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS CCA 72 bp TTGTGGCTCGGTTCTGTCTCTGAGGTCCTAACACAGTaGCCGTGTTCACCAACCCCTCCATCTCCTTCTTCT +
Preference number: 6 (lower is better)
Translates to: LWLGSVSEVLTQ*PCSPTPPSPSS
Trigger: AGAAGAAGGAGATGGAGGGGTTGGTGAACACGGCCACTGTGTTAGGACCTCAGAGACAGAACCGAGCCACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS CAA 90 bp GCATGGCATCTGCCAATTTGGCCACAAGCCGCTCTCGTACAGAACTaGGTTCGTGCTGACACAGGGCCAGCGCTTCCTTATAGTATTTCA +
Preference number: 6 (lower is better)
Translates to: AWHLPIWPQAALVQN*VRADTGPALPYSIS
Trigger: TGAAATACTATAAGGAAGCGCTGGCCCTGTGTCAGCACGAACCAAGTTCTGTACGAGAGCGGCTTGTGGCCAAATTGGCAGATGCCATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9
CDS GCA 72 bp CAGCCTTCTGGTGAAACTCCTGGGCTTCCCAATAGTTaGCAAGGACATTGTGGGTCATTCCAAGATTTTGAA +
Preference number: 6 (lower is better)
Translates to: QPSGETPGLPNS*QGHCGSFQDFE
Trigger: TTCAAAATCTTGGAATGACCCACAATGTCCTTGGCAACTATTGGGAAGCCCAGGAGTTTCACCAGAAGGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050258.9