Pregenerated sensors for TSX (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031329Ensembl transcript IDs: ENSMUST00000033691.5
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAAGCAGAATTTATTGGAAGTTTGGCAAGCAACAAACACCCTAGTTaGCCTGTAGATGACTTTAGATTGTTTTGCGGTGATTTTCATTTT | + |
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Preference number: 1 (lower is better) Translates to: QAEFIGSLASNKHPS*PVDDFRLFCGDFHF Trigger: AAAATGAAAATCACCGCAAAACAATCTAAAGTCATCTACAGGCCAACTAGGGTGTTTGTTGCTTGCCAAACTTCCAATAAATTCTGCTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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| CDS-3UTR GCA 90 bp | GTTTGTCTGTTTTCCATCAGGACTTCATTTATGCATGAGGGCACAATGGTAGCTCATTGCACTGCATTCTaGTTCAGAGGTCTTGGGGCT | + |
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Preference number: 4 (lower is better) Translates to: VCLFSIRTSFMHEGTMVAHCTAF*FRGLGA Trigger: AGCCCCAAGACCTCTGAAGCAGAATGCAGTGCAATG...AGCTACCATTGTGCCCTCATGCATAAATGAAGTCCTGATGGAAAACAGACAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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| CDS-3UTR TCA 90 bp | CTGTTTTCCATCAGGACTTCATTTATGCATGAGGGCACAATGGTAGCTGATGGTGTGGGTTCTGATCAGTaGACATCTCCATATACATGG | + |
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Preference number: 4 (lower is better) Translates to: LFSIRTSFMHEGTMVADGVGSDQ*TSPYTW Trigger: CCATGTATATGGAGATGTTCACTGATCAGAACCCAC...ACCATCAGCTACCATTGTGCCCTCATGCATAAATGAAGTCCTGATGGAAAACAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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| CDS-3UTR CCA 90 bp | GTTTGTCTGTTTTCCATCAGGACTTCATTTATGCATGAGGGCACAATGGTAGCTCTGCTTCAGAGGTCTTaGGGCTTTGCTTTTCAGACA | + |
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Preference number: 4 (lower is better) Translates to: VCLFSIRTSFMHEGTMVALLQRS*GFAFQT Trigger: TGTCTGAAAAGCAAAGCCCCAAGACCTCTGAAGCAG...AGCTACCATTGTGCCCTCATGCATAAATGAAGTCCTGATGGAAAACAGACAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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| CDS-3UTR CCA 90 bp | GTTTGTCTGTTTTCCATCAGGACTTCATTTATGCATGAGGGCACAATGGTAGCTTCAGTACATCCAGCTTaGCAAGTGTCCTCATCATCG | + |
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Preference number: 4 (lower is better) Translates to: VCLFSIRTSFMHEGTMVASVHPA*QVSSSS Trigger: CGATGATGAGGACACTTGCCAAGCTGGATGTACTGA...AGCTACCATTGTGCCCTCATGCATAAATGAAGTCCTGATGGAAAACAGACAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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| CDS-3UTR TCA 90 bp | CTGTTTTCCATCAGGACTTCATTTATGCATGAGGGCACAATGGTAGCTGATGGTATGTCTCTGTCACTGTaGCTGGTTTCATCATCTTCA | + |
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Preference number: 4 (lower is better) Translates to: LFSIRTSFMHEGTMVADGMSLSL*LVSSSS Trigger: TGAAGATGATGAAACCAGTCACAGTGACAGAGACAT...ACCATCAGCTACCATTGTGCCCTCATGCATAAATGAAGTCCTGATGGAAAACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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| CDS-3UTR GCA 90 bp | CTGTTTTCCATCAGGACTTCATTTATGCATGAGGGCACAATGGTAGCTGATGGTATACATGGAGGGGCTTaGTTTAATGTTGCCAGTGAT | + |
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Preference number: 4 (lower is better) Translates to: LFSIRTSFMHEGTMVADGIHGGA*FNVASD Trigger: ATCACTGGCAACATTAAAGCAAGCCCCTCCATGTAT...ACCATCAGCTACCATTGTGCCCTCATGCATAAATGAAGTCCTGATGGAAAACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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| CDS-3UTR CCA 90 bp | GGCTTAGTGTGTAGAGATGTTTGTTTGTTTGTTTGTTTGTCTGTTTTCCATCAGGAGGACGGCCCAGGCTaGAATCCCAGAACTTTGAAA | + |
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Preference number: 4 (lower is better) Translates to: GLVCRDVCLFVCLSVFHQEDGPG*NPRTLK Trigger: TTTCAAAGTTCTGGGATTCCAGCCTGGGCCGTCCTC...CTGATGGAAAACAGACAAACAAACAAACAAACAAACATCTCTACACACTAAGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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| CDS-3UTR CCA 90 bp | CTGTTTTCCATCAGGACTTCATTTATGCATGAGGGCACAATGGTAGCTGATGGTCTCTGTCACTGTGACTaGTTTCATCATCTTCAGTAC | + |
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Preference number: 4 (lower is better) Translates to: LFSIRTSFMHEGTMVADGLCHCD*FHHLQY Trigger: GTACTGAAGATGATGAAACCAGTCACAGTGACAGAG...ACCATCAGCTACCATTGTGCCCTCATGCATAAATGAAGTCCTGATGGAAAACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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| CDS-3UTR CCA 90 bp | GTTTGTCTGTTTTCCATCAGGACTTCATTTATGCATGAGGGCACAATGGTAGCTGTCTTGGTCAGCTTGTaGGTTCTGATCAGTGAACAT | + |
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Preference number: 4 (lower is better) Translates to: VCLFSIRTSFMHEGTMVAVLVSL*VLISEH Trigger: ATGTTCACTGATCAGAACCCACAAGCTGACCAAGAC...AGCTACCATTGTGCCCTCATGCATAAATGAAGTCCTGATGGAAAACAGACAAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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| CDS-3UTR TCA 90 bp | GGCTTAGTGTGTAGAGATGTTTGTTTGTTTGTTTGTTTGTCTGTTTTCCATCAGGTTCATGGCACCATCTaGTTCAGTTTCTTCCAGGTC | + |
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Preference number: 4 (lower is better) Translates to: GLVCRDVCLFVCLSVFHQVHGTI*FSFFQV Trigger: GACCTGGAAGAAACTGAATCAGATGGTGCCATGAAC...CTGATGGAAAACAGACAAACAAACAAACAAACAAACATCTCTACACACTAAGCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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| CDS-3UTR GCA 90 bp | GGCTTAGTGTGTAGAGATGTTTGTTTGTTTGTTTGTTTGTCTGTTTTCCATCAGGCAAGTCCATTGCACTaGATTCTGCTTCAGAGGTCT | + |
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Preference number: 4 (lower is better) Translates to: GLVCRDVCLFVCLSVFHQASPLH*ILLQRS Trigger: AGACCTCTGAAGCAGAATGCAGTGCAATGGACTTGC...CTGATGGAAAACAGACAAACAAACAAACAAACAAACATCTCTACACACTAAGCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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| CDS-3UTR TCA 90 bp | GGCTTAGTGTGTAGAGATGTTTGTTTGTTTGTTTGTTTGTCTGTTTTCCATCAGTCAGCTTGTGGGTTCTaGTCAGTGAACATCTCCATA | + |
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Preference number: 4 (lower is better) Translates to: GLVCRDVCLFVCLSVFHQSACGF*SVNISI Trigger: TATGGAGATGTTCACTGATCAGAACCCACAAGCTGA...CTGATGGAAAACAGACAAACAAACAAACAAACAAACATCTCTACACACTAAGCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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| CDS-3UTR CCA 90 bp | TTAGTGTGTAGAGATGTTTGTTTGTTTGTTTGTTTGTCTGTTTTCCATCAGGACTTCATCCTCGAATTCTaGCAAGTCCATTGCACTGCA | + |
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Preference number: 4 (lower is better) Translates to: LVCRDVCLFVCLSVFHQDFILEF*QVHCTA Trigger: TGCAGTGCAATGGACTTGCCAGAATTCGAGGATGAA...GTCCTGATGGAAAACAGACAAACAAACAAACAAACAAACATCTCTACACACTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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| CDS-3UTR CCA 90 bp | GGCTTAGTGTGTAGAGATGTTTGTTTGTTTGTTTGTTTGTCTGTTTTCCATCAGAATCAGTTGGGTTCATaGCACCATCTGATTCAGTTT | + |
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Preference number: 4 (lower is better) Translates to: GLVCRDVCLFVCLSVFHQNQLGS*HHLIQF Trigger: AAACTGAATCAGATGGTGCCATGAACCCAACTGATT...CTGATGGAAAACAGACAAACAAACAAACAAACAAACATCTCTACACACTAAGCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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| CDS TCA 90 bp | CATCATCCAGAGCAGAGGACGGCCCAGGCTGGAATCCCAGAACTTTaGAAAGCCAGTTTTCTTCATCCTCGAATTCTGGCAAGTCCATTG | + |
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Preference number: 5 (lower is better) Translates to: HHPEQRTAQAGIPEL*KASFLHPRILASPL Trigger: CAATGGACTTGCCAGAATTCGAGGATGAAGAAAACTGGCTTTTCAAAGTTCTGGGATTCCAGCCTGGGCCGTCCTCTGCTCTGGATGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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| CDS TCA 90 bp | CCATCTGATTCAGTTTCTTCCAGGTCTTGGTCAGCTTGTGGGTTCTaGTCAGTGAACATCTCCATATACATGGAGGGGCTTGCTTTAATG | + |
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Preference number: 5 (lower is better) Translates to: PSDSVSSRSWSACGF*SVNISIYMEGLALM Trigger: CATTAAAGCAAGCCCCTCCATGTATATGGAGATGTTCACTGATCAGAACCCACAAGCTGACCAAGACCTGGAAGAAACTGAATCAGATGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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| CDS-3UTR CAA 90 bp | TTCGGCTTAGTGTGTAGAGATGTTTGTTTGTTTGTTTGTTTGTCTGTTTTCCATCAGGTCTTGGTCAGCTaGTGGGTTCTGATCAGTGAA | + |
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Preference number: 5 (lower is better) Translates to: FGLVCRDVCLFVCLSVFHQVLVS*WVLISE Trigger: TTCACTGATCAGAACCCACAAGCTGACCAAGACCTG...ATGGAAAACAGACAAACAAACAAACAAACAAACATCTCTACACACTAAGCCGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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| CDS-3UTR CAA 90 bp | TTAGTGTGTAGAGATGTTTGTTTGTTTGTTTGTTTGTCTGTTTTCCATCAGGACAGTTTCTTCCAGGTCTaGGTCAGCTTGTGGGTTCTG | + |
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Preference number: 5 (lower is better) Translates to: LVCRDVCLFVCLSVFHQDSFFQV*VSLWVL Trigger: CAGAACCCACAAGCTGACCAAGACCTGGAAGAAACT...GTCCTGATGGAAAACAGACAAACAAACAAACAAACAAACATCTCTACACACTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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| CDS-3UTR CAA 90 bp | TTCGGCTTAGTGTGTAGAGATGTTTGTTTGTTTGTTTGTTTGTCTGTTTTCCATTGGAATCCCAGAACTTaGAAAAGCCAGTTTTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: FGLVCRDVCLFVCLSVFHWNPRT*KSQFSS Trigger: TGAAGAAAACTGGCTTTTCAAAGTTCTGGGATTCCA...ATGGAAAACAGACAAACAAACAAACAAACAAACATCTCTACACACTAAGCCGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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| CDS-3UTR CAA 90 bp | TTCGGCTTAGTGTGTAGAGATGTTTGTTTGTTTGTTTGTTTGTCTGTTTTCCATATGACTTTCACATTATaGTCTATGTCTCTGTCACTG | + |
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Preference number: 5 (lower is better) Translates to: FGLVCRDVCLFVCLSVFHMTFTL*SMSLSL Trigger: CAGTGACAGAGACATAGACAATAATGTGAAAGTCAT...ATGGAAAACAGACAAACAAACAAACAAACAAACATCTCTACACACTAAGCCGAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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| CDS TCA 72 bp | GAGCAGAGGACGGCCCAGGCTGGAATCCCAGAACTTTaGAAAGCCAGTTTTCTTCATCCTCGAATTCTGGCA | + |
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Preference number: 6 (lower is better) Translates to: EQRTAQAGIPEL*KASFLHPRILA Trigger: TGCCAGAATTCGAGGATGAAGAAAACTGGCTTTTCAAAGTTCTGGGATTCCAGCCTGGGCCGTCCTCTGCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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| CDS CAA 72 bp | ATCGGTACTGCTGACTCTGTCCTCCTGAAGAATATCTaGCAGGTGAAGAAATTCGGCAGCGCTCAGTGGCTC | + |
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Preference number: 6 (lower is better) Translates to: IGTADSVLLKNI*QVKKFGSAQWL Trigger: GAGCCACTGAGCGCTGCCGAATTTCTTCACCTGCAAGATATTCTTCAGGAGGACAGAGTCAGCAGTACCGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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| CDS GCA 72 bp | CCAGTTTTCTTCATCCTCGAATTCTGGCAAGTCCATTaGACTGCATTCTGCTTCAGAGGTCTTGGGGCTTTG | + |
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Preference number: 6 (lower is better) Translates to: PVFFILEFWQVH*TAFCFRGLGAL Trigger: CAAAGCCCCAAGACCTCTGAAGCAGAATGCAGTGCAATGGACTTGCCAGAATTCGAGGATGAAGAAAACTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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| CDS CAA 72 bp | GCCAGTTTTCTTCATCCTCGAATTCTGGCAAGTCCATaGCACTGCATTCTGCTTCAGAGGTCTTGGGGCTTT | + |
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Preference number: 6 (lower is better) Translates to: ASFLHPRILASP*HCILLQRSWGF Trigger: AAAGCCCCAAGACCTCTGAAGCAGAATGCAGTGCAATGGACTTGCCAGAATTCGAGGATGAAGAAAACTGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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| CDS TCA 72 bp | TCAGTTTCTTCCAGGTCTTGGTCAGCTTGTGGGTTCTaGTCAGTGAACATCTCCATATACATGGAGGGGCTT | + |
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Preference number: 6 (lower is better) Translates to: SVSSRSWSACGF*SVNISIYMEGL Trigger: AAGCCCCTCCATGTATATGGAGATGTTCACTGATCAGAACCCACAAGCTGACCAAGACCTGGAAGAAACTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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| CDS GCA 72 bp | ATCCTCGAATTCTGGCAAGTCCATTGCACTGCATTCTaGTTCAGAGGTCTTGGGGCTTTGCTTTTCAGACAT | + |
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Preference number: 6 (lower is better) Translates to: ILEFWQVHCTAF*FRGLGALLFRH Trigger: ATGTCTGAAAAGCAAAGCCCCAAGACCTCTGAAGCAGAATGCAGTGCAATGGACTTGCCAGAATTCGAGGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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| CDS CAA 72 bp | ACTGTGACTGGTTTCATCATCTTCAGTACATCCAGCTaGGCAAGTGTCCTCATCATCGGTACTGCTGACTCT | + |
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Preference number: 6 (lower is better) Translates to: TVTGFIIFSTSS*ASVLIIGTADS Trigger: AGAGTCAGCAGTACCGATGATGAGGACACTTGCCAAGCTGGATGTACTGAAGATGATGAAACCAGTCACAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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| CDS GCA 72 bp | TTTCTTCATCCTCGAATTCTGGCAAGTCCATTGCACTaGATTCTGCTTCAGAGGTCTTGGGGCTTTGCTTTT | + |
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Preference number: 6 (lower is better) Translates to: FLHPRILASPLH*ILLQRSWGFAF Trigger: AAAAGCAAAGCCCCAAGACCTCTGAAGCAGAATGCAGTGCAATGGACTTGCCAGAATTCGAGGATGAAGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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| CDS GCA 72 bp | CTGATCAGTGAACATCTCCATATACATGGAGGGGCTTaGTTTAATGTTGCCAGTGATGACTTTCACATTATT | + |
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Preference number: 6 (lower is better) Translates to: LISEHLHIHGGA*FNVASDDFHII Trigger: AATAATGTGAAAGTCATCACTGGCAACATTAAAGCAAGCCCCTCCATGTATATGGAGATGTTCACTGATCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033691.5 |
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