Pregenerated sensors for TSTD3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028251Ensembl transcript IDs: ENSMUST00000029915.6
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTaGCTCTGCCTCCCACGTGCTGGGATCAAAGGCGTGCGCCACCAC | + |
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Preference number: 1 (lower is better) Translates to: NSLCRPGWPRTQKSA*LCLPRAGIKGVRHH Trigger: GTGGTGGCGCACGCCTTTGATCCCAGCACGTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| 3UTR GCA 90 bp | ATCCAGAATCTATTAGCCTTTGGTGCCAGGGCTGGGTTTTTCTTTTaGTTAATCCACCATCCTTATAGATATGAACACCGAGTCTGTAAT | + |
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Preference number: 1 (lower is better) Translates to: IQNLLAFGARAGFFF*LIHHPYRYEHRVCN Trigger: ATTACAGACTCGGTGTTCATATCTATAAGGATGGTGGATTAAGCAAAAGAAAAACCCAGCCCTGGCACCAAAGGCTAATAGATTCTGGAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| 3UTR-3UTR GCA 90 bp | GTCTTCAGATGCTGTGAATATATTTTCCTGAGTAGAGTTGACTTCTCCAGACCCAAATCCGCCTGCCTCTaGCTCCCACGTGCTGGGATC | + |
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Preference number: 2 (lower is better) Translates to: VFRCCEYIFLSRVDFSRPKSACL*LPRAGI Trigger: GATCCCAGCACGTGGGAGGCAGAGGCAGGCGGATTT...GGGTCTGGAGAAGTCAACTCTACTCAGGAAAATATATTCACAGCATCTGAAGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| 3UTR-3UTR TCA 90 bp | CCTGACGTTTTCAGTCATGGCCACAGAACATCTCCAGTATCCCACACCAATTCCGTGTGCAGTAGACTTTaGAATATTCAGGGGAGCAGC | + |
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Preference number: 2 (lower is better) Translates to: PDVFSHGHRTSPVSHTNSVCSRL*NIQGSS Trigger: GCTGCTCCCCTGAATATTTCAAAGTCTACTGCACAC...GGAATTGGTGTGGGATACTGGAGATGTTCTGTGGCCATGACTGAAAACGTCAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| 3UTR-3UTR TCA 90 bp | CCTGACGTTTTCAGTCATGGCCACAGAACATCTCCAGTATCCCACACCAATTCCCACCGCCAGCTTATCTaGTCATTTTGGAACACCAAA | + |
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Preference number: 2 (lower is better) Translates to: PDVFSHGHRTSPVSHTNSHRQLI*SFWNTK Trigger: TTTGGTGTTCCAAAATGATCAGATAAGCTGGCGGTG...GGAATTGGTGTGGGATACTGGAGATGTTCTGTGGCCATGACTGAAAACGTCAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| 3UTR-3UTR CCA 90 bp | CCTGACGTTTTCAGTCATGGCCACAGAACATCTCCAGTATCCCACACCAATTCCCTTTGGTGCCAGGGCTaGGTTTTTCTTTTGCTTAAT | + |
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Preference number: 2 (lower is better) Translates to: PDVFSHGHRTSPVSHTNSLWCQG*VFLLLN Trigger: ATTAAGCAAAAGAAAAACCCAGCCCTGGCACCAAAG...GGAATTGGTGTGGGATACTGGAGATGTTCTGTGGCCATGACTGAAAACGTCAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| 3UTR-3UTR TCA 90 bp | ACGTTTTCAGTCATGGCCACAGAACATCTCCAGTATCCCACACCAATTCCTGGCGTGAATATATTTTCCTaGGTAGAGTTGACTTCTCCA | + |
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Preference number: 2 (lower is better) Translates to: TFSVMATEHLQYPTPIPGVNIFS*VELTSP Trigger: TGGAGAAGTCAACTCTACTCAGGAAAATATATTCAC...GCCAGGAATTGGTGTGGGATACTGGAGATGTTCTGTGGCCATGACTGAAAACGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| 3UTR-3UTR GCA 90 bp | CCTGACGTTTTCAGTCATGGCCACAGAACATCTCCAGTATCCCACACCAATTCCGCTGGGTTTTTCTTTTaGTTAATCCACCATCCTTAT | + |
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Preference number: 2 (lower is better) Translates to: PDVFSHGHRTSPVSHTNSAGFFF*LIHHPY Trigger: ATAAGGATGGTGGATTAAGCAAAAGAAAAACCCAGC...GGAATTGGTGTGGGATACTGGAGATGTTCTGTGGCCATGACTGAAAACGTCAGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| 3UTR-3UTR GCA 90 bp | GTCTTCAGATGCTGTGAATATATTTTCCTGAGTAGAGTTGACTTCTCCAGACCCTCTATTAGCCTTTGGTaGCAGGGCTGGGTTTTTCTT | + |
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Preference number: 2 (lower is better) Translates to: VFRCCEYIFLSRVDFSRPSISLW*QGWVFL Trigger: AAGAAAAACCCAGCCCTGGCACCAAAGGCTAATAGA...GGGTCTGGAGAAGTCAACTCTACTCAGGAAAATATATTCACAGCATCTGAAGAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| 3UTR-3UTR CCA 90 bp | GTCTTCAGATGCTGTGAATATATTTTCCTGAGTAGAGTTGACTTCTCCAGACCCTTGGACCTAAAAATATaGGTCTCAAACCAGAAGCTC | + |
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Preference number: 2 (lower is better) Translates to: VFRCCEYIFLSRVDFSRPLDLKI*VSNQKL Trigger: GAGCTTCTGGTTTGAGACCCATATTTTTAGGTCCAA...GGGTCTGGAGAAGTCAACTCTACTCAGGAAAATATATTCACAGCATCTGAAGAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| 3UTR GCA 72 bp | TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTaGCTCTGCCTCCCACGTGCTGGGATCAAAGGCGTG | + |
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Preference number: 3 (lower is better) Translates to: CRPGWPRTQKSA*LCLPRAGIKGV Trigger: CACGCCTTTGATCCCAGCACGTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| 3UTR GCA 72 bp | CCTGCCTCTGCCTCCCACGTGCTGGGATCAAAGGCGTaGGCCACCACCGCCAGCTTATCTGATCATTTTGGA | + |
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Preference number: 3 (lower is better) Translates to: PASASHVLGSKA*ATTASLSDHFG Trigger: TCCAAAATGATCAGATAAGCTGGCGGTGGTGGCGCACGCCTTTGATCCCAGCACGTGGGAGGCAGAGGCAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| 3UTR TCA 72 bp | GAAATATTCAGGGGAGCAGCACCCTCAGTTCTCAGATaGGGAAAACGGTCGCCAAGCAGTCATCCAGAATCT | + |
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Preference number: 3 (lower is better) Translates to: EIFRGAAPSVLR*GKRSPSSHPES Trigger: AGATTCTGGATGACTGCTTGGCGACCGTTTTCCTCATCTGAGAACTGAGGGTGCTGCTCCCCTGAATATTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| 3UTR CCA 72 bp | CGGTCGCCAAGCAGTCATCCAGAATCTATTAGCCTTTaGTGCCAGGGCTGGGTTTTTCTTTTGCTTAATCCA | + |
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Preference number: 3 (lower is better) Translates to: RSPSSHPESISL*CQGWVFLLLNP Trigger: TGGATTAAGCAAAAGAAAAACCCAGCCCTGGCACCAAAGGCTAATAGATTCTGGATGACTGCTTGGCGACCG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| 3UTR-3UTR CAA 90 bp | ACACACACACTCCTGACGTTTTCAGTCATGGCCACAGAACATCTCCAGTATCCCCCAGAAGCTCAGTTATaGTTTAAAATTGGGGCTGCT | + |
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Preference number: 3 (lower is better) Translates to: THTLLTFSVMATEHLQYPPEAQL*FKIGAA Trigger: AGCAGCCCCAATTTTAAACAATAACTGAGCTTCTGG...GGGATACTGGAGATGTTCTGTGGCCATGACTGAAAACGTCAGGAGTGTGTGTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| 3UTR GCA 72 bp | TCGCCAAGCAGTCATCCAGAATCTATTAGCCTTTGGTaGCAGGGCTGGGTTTTTCTTTTGCTTAATCCACCA | + |
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Preference number: 3 (lower is better) Translates to: SPSSHPESISLW*QGWVFLLLNPP Trigger: TGGTGGATTAAGCAAAAGAAAAACCCAGCCCTGGCACCAAAGGCTAATAGATTCTGGATGACTGCTTGGCGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| 3UTR CCA 72 bp | TCTTTTCTTTTGAAACAGAGTCTCCGTAGTCCCAGCTaGACTCAAACTCATGGTGATCTTTCTGCCTCCGTC | + |
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Preference number: 3 (lower is better) Translates to: SFLLKQSLRSPS*TQTHGDLSASV Trigger: GACGGAGGCAGAAAGATCACCATGAGTTTGAGTCCAGCTGGGACTACGGAGACTCTGTTTCAAAAGAAAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| 3UTR TCA 72 bp | GTGGCAACTCATATTATCTCAGTGTGCAGTAGACTTTaGAATATTCAGGGGAGCAGCACCCTCAGTTCTCAG | + |
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Preference number: 3 (lower is better) Translates to: VATHIISVCSRL*NIQGSSTLSSQ Trigger: CTGAGAACTGAGGGTGCTGCTCCCCTGAATATTTCAAAGTCTACTGCACACTGAGATAATATGAGTTGCCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| 3UTR GCA 72 bp | ATCCCACACCAATTCCTGGCCTCTTCTAGGTTACTTTaGTCTCCACAGTCAAAACCCATCAGATTCTTATCC | + |
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Preference number: 3 (lower is better) Translates to: IPHQFLASSRLL*SPQSKPIRFLS Trigger: GGATAAGAATCTGATGGGTTTTGACTGTGGAGAGCAAAGTAACCTAGAAGAGGCCAGGAATTGGTGTGGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| 3UTR-3UTR CAA 90 bp | TTTGACACACACACTCCTGACGTTTTCAGTCATGGCCACAGAACATCTCCAGTAGGCTGGGTTTTTCTTTaGCTTAATCCACCATCCTTA | + |
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Preference number: 3 (lower is better) Translates to: FDTHTPDVFSHGHRTSPVGWVFL*LNPPSL Trigger: TAAGGATGGTGGATTAAGCAAAAGAAAAACCCAGCC...TACTGGAGATGTTCTGTGGCCATGACTGAAAACGTCAGGAGTGTGTGTGTCAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| 3UTR TCA 72 bp | TGCCATGAGTCTTCAGATGCTGTGAATATATTTTCCTaGGTAGAGTTGACTTCTCCAGACCCCAGAGTCTTT | + |
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Preference number: 3 (lower is better) Translates to: CHESSDAVNIFS*VELTSPDPRVF Trigger: AAAGACTCTGGGGTCTGGAGAAGTCAACTCTACTCAGGAAAATATATTCACAGCATCTGAAGACTCATGGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| 3UTR GCA 72 bp | CTATTAGCCTTTGGTGCCAGGGCTGGGTTTTTCTTTTaGTTAATCCACCATCCTTATAGATATGAACACCGA | + |
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Preference number: 3 (lower is better) Translates to: LLAFGARAGFFF*LIHHPYRYEHR Trigger: TCGGTGTTCATATCTATAAGGATGGTGGATTAAGCAAAAGAAAAACCCAGCCCTGGCACCAAAGGCTAATAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| 3UTR CCA 72 bp | GTTAACACTGGTTTTGCTCACAACCGTGATGACACATaGCTAGATAACTGGAGCTATCTGATCGGTTTGTTT | + |
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Preference number: 3 (lower is better) Translates to: VNTGFAHNRDDT*LDNWSYLIGLF Trigger: AAACAAACCGATCAGATAGCTCCAGTTATCTAGCCATGTGTCATCACGGTTGTGAGCAAAACCAGTGTTAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| CDS-3UTR GCA 90 bp | ACACACACACTCCTGACGTTTTCAGTCATGGCCACAGAACATCTCCAGTATCCCATCCTAGGGCCGCCCTaGCTGAGGTCCCAAGCACCA | + |
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Preference number: 4 (lower is better) Translates to: THTLLTFSVMATEHLQYPILGPP*LRSQAP Trigger: TGGTGCTTGGGACCTCAGGCAGGGCGGCCCTAGGAT...GGGATACTGGAGATGTTCTGTGGCCATGACTGAAAACGTCAGGAGTGTGTGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| CDS-3UTR TCA 90 bp | TTTGACACACACACTCCTGACGTTTTCAGTCATGGCCACAGAACATCTCCAGTAGCTGCATCTCCATATTaGCTTCAAACCGCCAAGCGC | + |
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Preference number: 4 (lower is better) Translates to: FDTHTPDVFSHGHRTSPVAASPY*LQTAKR Trigger: GCGCTTGGCGGTTTGAAGTCAATATGGAGATGCAGC...TACTGGAGATGTTCTGTGGCCATGACTGAAAACGTCAGGAGTGTGTGTGTCAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| CDS-3UTR TCA 90 bp | GGTTTTGCTCACAACCGTGATGACACATGGCTAGATAACTGGAGCTATCTGATCGACAGTACTTCTCTTTaGAGTCCACTGGGTTCATCT | + |
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Preference number: 4 (lower is better) Translates to: GFAHNRDDTWLDNWSYLIDSTSL*SPLGSS Trigger: AGATGAACCCAGTGGACTTCAAAGAGAAGTACTGTC...GATCAGATAGCTCCAGTTATCTAGCCATGTGTCATCACGGTTGTGAGCAAAACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| CDS-3UTR CCA 90 bp | ACACACACACTCCTGACGTTTTCAGTCATGGCCACAGAACATCTCCAGTATCCCGTAGAACAAAATGCTTaGCTGCATCTCCATATTGAC | + |
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Preference number: 4 (lower is better) Translates to: THTLLTFSVMATEHLQYPVEQNA*LHLHID Trigger: GTCAATATGGAGATGCAGCCAAGCATTTTGTTCTAC...GGGATACTGGAGATGTTCTGTGGCCATGACTGAAAACGTCAGGAGTGTGTGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| CDS-3UTR GCA 90 bp | CCTGACGTTTTCAGTCATGGCCACAGAACATCTCCAGTATCCCACACCAATTCCAACAAAATGCTTGGCTaGATCTCCATATTGACTTCA | + |
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Preference number: 4 (lower is better) Translates to: PDVFSHGHRTSPVSHTNSNKMLG*ISILTS Trigger: TGAAGTCAATATGGAGATGCAGCCAAGCATTTTGTT...GGAATTGGTGTGGGATACTGGAGATGTTCTGTGGCCATGACTGAAAACGTCAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| CDS-3UTR CCA 90 bp | GTCTTCAGATGCTGTGAATATATTTTCCTGAGTAGAGTTGACTTCTCCAGACCCCCAGACGGTCAGATTTaGATGGCTTCACTTGACAGT | + |
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Preference number: 4 (lower is better) Translates to: VFRCCEYIFLSRVDFSRPPDGQI*MASLDS Trigger: ACTGTCAAGTGAAGCCATCCAAATCTGACCGTCTGG...GGGTCTGGAGAAGTCAACTCTACTCAGGAAAATATATTCACAGCATCTGAAGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| 3UTR CAA 72 bp | ACTCATGGTGATCTTTCTGCCTCCGTCTTTCCAGTATaGGACCTAAAAATATGGGTCTCAAACCAGAAGCTC | + |
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Preference number: 4 (lower is better) Translates to: THGDLSASVFPV*DLKIWVSNQKL Trigger: GAGCTTCTGGTTTGAGACCCATATTTTTAGGTCCAATACTGGAAAGACGGAGGCAGAAAGATCACCATGAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| CDS-3UTR TCA 90 bp | CGTGATGACACATGGCTAGATAACTGGAGCTATCTGATCGGTTTGTTTGTTTTTACTGTTAAAGCCCAGTaGTATTGCTGTGTCCATAGC | + |
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Preference number: 4 (lower is better) Translates to: RDDTWLDNWSYLIGLFVFTVKAQ*YCCVHS Trigger: GCTATGGACACAGCAATATCACTGGGCTTTAACAGT...AAAAACAAACAAACCGATCAGATAGCTCCAGTTATCTAGCCATGTGTCATCACG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| CDS-3UTR TCA 90 bp | GTCTTCAGATGCTGTGAATATATTTTCCTGAGTAGAGTTGACTTCTCCAGACCCCAATGGTATGTTGATTaGTCCAGGTATTTTTCCTTG | + |
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Preference number: 4 (lower is better) Translates to: VFRCCEYIFLSRVDFSRPQWYVD*SRYFSL Trigger: CAAGGAAAAATACCTGGATCAATCAACATACCATTG...GGGTCTGGAGAAGTCAACTCTACTCAGGAAAATATATTCACAGCATCTGAAGAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| CDS-3UTR CAA 90 bp | ACACACACACTCCTGACGTTTTCAGTCATGGCCACAGAACATCTCCAGTATCCCGGCTGCATCTCCATATaGACTTCAAACCGCCAAGCG | + |
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Preference number: 5 (lower is better) Translates to: THTLLTFSVMATEHLQYPGCISI*TSNRQA Trigger: CGCTTGGCGGTTTGAAGTCAATATGGAGATGCAGCC...GGGATACTGGAGATGTTCTGTGGCCATGACTGAAAACGTCAGGAGTGTGTGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| CDS-3UTR CAA 90 bp | TTTGACACACACACTCCTGACGTTTTCAGTCATGGCCACAGAACATCTCCAGTATCCTCCAGCATAATGTaGAGCACTGTTAAAGCCCAG | + |
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Preference number: 5 (lower is better) Translates to: FDTHTPDVFSHGHRTSPVSSSIM*STVKAQ Trigger: CTGGGCTTTAACAGTGCTCAACATTATGCTGGAGGA...TACTGGAGATGTTCTGTGGCCATGACTGAAAACGTCAGGAGTGTGTGTGTCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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| CDS-3UTR CAA 90 bp | GTCTTCAGATGCTGTGAATATATTTTCCTGAGTAGAGTTGACTTCTCCAGACCCTCCAGGTATTTTTCCTaGCTCAAGAATTTCCAATGT | + |
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Preference number: 5 (lower is better) Translates to: VFRCCEYIFLSRVDFSRPSRYFS*LKNFQC Trigger: ACATTGGAAATTCTTGAGCAAGGAAAAATACCTGGA...GGGTCTGGAGAAGTCAACTCTACTCAGGAAAATATATTCACAGCATCTGAAGAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029915.6 |
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