Pregenerated sensors for TSTD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000103711Ensembl transcript IDs: ENSMUST00000171362.2
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS-3UTR CCA 90 bp | TATTTGAGTTTTTCATGTGTGAAGCACTACAAGGATTTGCCTAGCCCAGCAAGGGCCAGTTGTGTGGCCTaGAGACCCCGCCTGCCCATC | + |
Preference number: 4 (lower is better) Translates to: YLSFSCVKHYKDLPSPARASCVA*RPRLPI Trigger: GATGGGCAGGCGGGGTCTCCAGGCCACACAACTGGC...CCTTGCTGGGCTAGGCAAATCCTTGTAGTGCTTCACACATGAAAAACTCAAATA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171362.2 |
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CDS-3UTR GCA 90 bp | TATTTGAGTTTTTCATGTGTGAAGCACTACAAGGATTTGCCTAGCCCAGCAAGGCACAGGGATGTTGAGTaGCCCAGGAATGGTACCAGC | + |
Preference number: 4 (lower is better) Translates to: YLSFSCVKHYKDLPSPARHRDVE*PRNGTS Trigger: GCTGGTACCATTCCTGGGGCACTCAACATCCCTGTG...CCTTGCTGGGCTAGGCAAATCCTTGTAGTGCTTCACACATGAAAAACTCAAATA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171362.2 |
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CDS-3UTR CCA 90 bp | ACTTTTTATTTGAGTTTTTCATGTGTGAAGCACTACAAGGATTTGCCTAGCCCACTTGTGCCAGTTGTGTaGCCTGGAGACCCCGCCTGC | + |
Preference number: 4 (lower is better) Translates to: TFYLSFSCVKHYKDLPSPLVPVV*PGDPAC Trigger: GCAGGCGGGGTCTCCAGGCCACACAACTGGCACAAG...TGGGCTAGGCAAATCCTTGTAGTGCTTCACACATGAAAAACTCAAATAAAAAGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000171362.2 |
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CDS-3UTR TCA 90 bp | TATTTGAGTTTTTCATGTGTGAAGCACTACAAGGATTTGCCTAGCCCAGCAAGGGCACAGTACAGAGTCTaGAAAGCAGCTGGGTCCATG | + |
Preference number: 4 (lower is better) Translates to: YLSFSCVKHYKDLPSPARAQYRV*KAAGSM Trigger: CATGGACCCAGCTGCTTTTCAGACTCTGTACTGTGC...CCTTGCTGGGCTAGGCAAATCCTTGTAGTGCTTCACACATGAAAAACTCAAATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171362.2 |
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CDS-3UTR CCA 90 bp | ACTTTTTATTTGAGTTTTTCATGTGTGAAGCACTACAAGGATTTGCCTAGCCCAGAACGTCGAAGAGCCTaGCCCTGCCTGAGGCTACGA | + |
Preference number: 4 (lower is better) Translates to: TFYLSFSCVKHYKDLPSPERRRA*PCLRLR Trigger: TCGTAGCCTCAGGCAGGGCCAGGCTCTTCGACGTTC...TGGGCTAGGCAAATCCTTGTAGTGCTTCACACATGAAAAACTCAAATAAAAAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000171362.2 |
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CDS-3UTR GCA 90 bp | ACTTTTTATTTGAGTTTTTCATGTGTGAAGCACTACAAGGATTTGCCTAGCCCAAGGAATGGTACCAGCTaGTGCCTCCTCTGGAGATCG | + |
Preference number: 4 (lower is better) Translates to: TFYLSFSCVKHYKDLPSPRNGTS*CLLWRS Trigger: CGATCTCCAGAGGAGGCAGCAGCTGGTACCATTCCT...TGGGCTAGGCAAATCCTTGTAGTGCTTCACACATGAAAAACTCAAATAAAAAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000171362.2 |
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CDS-3UTR GCA 90 bp | ACTTTTTATTTGAGTTTTTCATGTGTGAAGCACTACAAGGATTTGCCTAGCCCACCTGGAGACCCCGCCTaGCCATCTGACAGAAGAAAA | + |
Preference number: 4 (lower is better) Translates to: TFYLSFSCVKHYKDLPSPPGDPA*PSDRRK Trigger: TTTTCTTCTGTCAGATGGGCAGGCGGGGTCTCCAGG...TGGGCTAGGCAAATCCTTGTAGTGCTTCACACATGAAAAACTCAAATAAAAAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000171362.2 |
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CDS-3UTR CCA 90 bp | ACTTTTTATTTGAGTTTTTCATGTGTGAAGCACTACAAGGATTTGCCTAGCCCAAGCTGCTGCCTCCTCTaGAGATCGAACGTCGAAGAG | + |
Preference number: 4 (lower is better) Translates to: TFYLSFSCVKHYKDLPSPSCCLL*RSNVEE Trigger: CTCTTCGACGTTCGATCTCCAGAGGAGGCAGCAGCT...TGGGCTAGGCAAATCCTTGTAGTGCTTCACACATGAAAAACTCAAATAAAAAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000171362.2 |
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CDS-3UTR GCA 90 bp | ACTTTTTATTTGAGTTTTTCATGTGTGAAGCACTACAAGGATTTGCCTAGCCCAATAGCCAAGACCTTGTaGCAGTTGTGTGGCCTGGAG | + |
Preference number: 4 (lower is better) Translates to: TFYLSFSCVKHYKDLPSPIAKTL*QLCGLE Trigger: CTCCAGGCCACACAACTGGCACAAGGTCTTGGCTAT...TGGGCTAGGCAAATCCTTGTAGTGCTTCACACATGAAAAACTCAAATAAAAAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000171362.2 |
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CDS-3UTR TCA 90 bp | ACTTTTTATTTGAGTTTTTCATGTGTGAAGCACTACAAGGATTTGCCTAGCCCACCCCGCCTGCCCATCTaGCAGAAGAAAATAAGATTC | + |
Preference number: 4 (lower is better) Translates to: TFYLSFSCVKHYKDLPSPPRLPI*QKKIRF Trigger: GAATCTTATTTTCTTCTGTCAGATGGGCAGGCGGGG...TGGGCTAGGCAAATCCTTGTAGTGCTTCACACATGAAAAACTCAAATAAAAAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000171362.2 |
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CDS-3UTR CCA 90 bp | ACTTTTTATTTGAGTTTTTCATGTGTGAAGCACTACAAGGATTTGCCTAGCCCAAGTCTGAAAAGCAGCTaGGTCCATGTTCAAGGCGAT | + |
Preference number: 4 (lower is better) Translates to: TFYLSFSCVKHYKDLPSPSLKSS*VHVQGD Trigger: ATCGCCTTGAACATGGACCCAGCTGCTTTTCAGACT...TGGGCTAGGCAAATCCTTGTAGTGCTTCACACATGAAAAACTCAAATAAAAAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000171362.2 |
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CDS CCA 90 bp | TGGTACCAGCTGCTGCCTCCTCTGGAGATCGAACGTCGAAGAGCCTaGCCCTGCCTGAGGCTACGAGTGAACGGAGCTCAGAGAAGGAGA | + |
Preference number: 5 (lower is better) Translates to: WYQLLPPLEIERRRA*PCLRLRVNGAQRRR Trigger: TCTCCTTCTCTGAGCTCCGTTCACTCGTAGCCTCAGGCAGGGCCAGGCTCTTCGACGTTCGATCTCCAGAGGAGGCAGCAGCTGGTACCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171362.2 |
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CDS GCA 90 bp | CAATTCAGACACAGGGATGTTGAGTGCCCCAGGAATGGTACCAGCTaGTGCCTCCTCTGGAGATCGAACGTCGAAGAGCCTGGCCCTGCC | + |
Preference number: 5 (lower is better) Translates to: QFRHRDVECPRNGTS*CLLWRSNVEEPGPA Trigger: GGCAGGGCCAGGCTCTTCGACGTTCGATCTCCAGAGGAGGCAGCAGCTGGTACCATTCCTGGGGCACTCAACATCCCTGTGTCTGAATTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171362.2 |
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CDS GCA 90 bp | GTCCATGTTCAAGGCGATTTCCAATTCAGACACAGGGATGTTGAGTaGCCCAGGAATGGTACCAGCTGCTGCCTCCTCTGGAGATCGAAC | + |
Preference number: 5 (lower is better) Translates to: VHVQGDFQFRHRDVE*PRNGTSCCLLWRSN Trigger: GTTCGATCTCCAGAGGAGGCAGCAGCTGGTACCATTCCTGGGGCACTCAACATCCCTGTGTCTGAATTGGAAATCGCCTTGAACATGGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171362.2 |
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CDS TCA 90 bp | AGACCTTGTGCCAGTTGTGTGGCCTGGAGACCCCGCCTGCCCATCTaGCAGAAGAAAATAAGATTCTTGTCTTCTAGCTTTGGCTTCTCA | + |
Preference number: 5 (lower is better) Translates to: RPCASCVAWRPRLPI*QKKIRFLSSSFGFS Trigger: TGAGAAGCCAAAGCTAGAAGACAAGAATCTTATTTTCTTCTGTCAGATGGGCAGGCGGGGTCTCCAGGCCACACAACTGGCACAAGGTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171362.2 |
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CDS-3UTR CAA 90 bp | ACTTTTTATTTGAGTTTTTCATGTGTGAAGCACTACAAGGATTTGCCTAGCCCATTCCTGCAGCCGCACTaGTGTGACTGTGACGCAGAA | + |
Preference number: 5 (lower is better) Translates to: TFYLSFSCVKHYKDLPSPFLQPH*CDCDAE Trigger: TTCTGCGTCACAGTCACACAAGTGCGGCTGCAGGAA...TGGGCTAGGCAAATCCTTGTAGTGCTTCACACATGAAAAACTCAAATAAAAAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000171362.2 |
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CDS-3UTR CAA 90 bp | TATTTGAGTTTTTCATGTGTGAAGCACTACAAGGATTTGCCTAGCCCAGCAAGGTCTTGTCTTCTAGCTTaGGCTTCTCAGCACAGTACA | + |
Preference number: 5 (lower is better) Translates to: YLSFSCVKHYKDLPSPARSCLLA*ASQHST Trigger: TGTACTGTGCTGAGAAGCCAAAGCTAGAAGACAAGA...CCTTGCTGGGCTAGGCAAATCCTTGTAGTGCTTCACACATGAAAAACTCAAATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171362.2 |
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CDS CAA 72 bp | CCCGGCATAGTTCCGAGCCCCTGTATAGCCAAGACCTaGTGCCAGTTGTGTGGCCTGGAGACCCCGCCTGCC | + |
Preference number: 6 (lower is better) Translates to: PGIVPSPCIAKT*CQLCGLETPPA Trigger: GGCAGGCGGGGTCTCCAGGCCACACAACTGGCACAAGGTCTTGGCTATACAGGGGCTCGGAACTATGCCGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171362.2 |
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CDS CCA 72 bp | CTGCTGCCTCCTCTGGAGATCGAACGTCGAAGAGCCTaGCCCTGCCTGAGGCTACGAGTGAACGGAGCTCAG | + |
Preference number: 6 (lower is better) Translates to: LLPPLEIERRRA*PCLRLRVNGAQ Trigger: CTGAGCTCCGTTCACTCGTAGCCTCAGGCAGGGCCAGGCTCTTCGACGTTCGATCTCCAGAGGAGGCAGCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171362.2 |
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CDS GCA 72 bp | CCTCCTCTGGAGATCGAACGTCGAAGAGCCTGGCCCTaGCTGAGGCTACGAGTGAACGGAGCTCAGAGAAGG | + |
Preference number: 6 (lower is better) Translates to: PPLEIERRRAWP*LRLRVNGAQRR Trigger: CCTTCTCTGAGCTCCGTTCACTCGTAGCCTCAGGCAGGGCCAGGCTCTTCGACGTTCGATCTCCAGAGGAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171362.2 |
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CDS CAA 72 bp | GTTCCGAGCCCCTGTATAGCCAAGACCTTGTGCCAGTaGTGTGGCCTGGAGACCCCGCCTGCCCATCTGACA | + |
Preference number: 6 (lower is better) Translates to: VPSPCIAKTLCQ*CGLETPPAHLT Trigger: TGTCAGATGGGCAGGCGGGGTCTCCAGGCCACACAACTGGCACAAGGTCTTGGCTATACAGGGGCTCGGAAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171362.2 |
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CDS GCA 72 bp | AGGGATGTTGAGTGCCCCAGGAATGGTACCAGCTGCTaGCTCCTCTGGAGATCGAACGTCGAAGAGCCTGGC | + |
Preference number: 6 (lower is better) Translates to: RDVECPRNGTSC*LLWRSNVEEPG Trigger: GCCAGGCTCTTCGACGTTCGATCTCCAGAGGAGGCAGCAGCTGGTACCATTCCTGGGGCACTCAACATCCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171362.2 |
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CDS CCA 72 bp | GAGCCCCTGTATAGCCAAGACCTTGTGCCAGTTGTGTaGCCTGGAGACCCCGCCTGCCCATCTGACAGAAGA | + |
Preference number: 6 (lower is better) Translates to: EPLYSQDLVPVV*PGDPACPSDRR Trigger: TCTTCTGTCAGATGGGCAGGCGGGGTCTCCAGGCCACACAACTGGCACAAGGTCTTGGCTATACAGGGGCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171362.2 |
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CDS GCA 72 bp | CACAGGGATGTTGAGTGCCCCAGGAATGGTACCAGCTaGTGCCTCCTCTGGAGATCGAACGTCGAAGAGCCT | + |
Preference number: 6 (lower is better) Translates to: HRDVECPRNGTS*CLLWRSNVEEP Trigger: AGGCTCTTCGACGTTCGATCTCCAGAGGAGGCAGCAGCTGGTACCATTCCTGGGGCACTCAACATCCCTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171362.2 |
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CDS CCA 72 bp | TGGCTTCTCAGCACAGTACAGAGTCTGAAAAGCAGCTaGGTCCATGTTCAAGGCGATTTCCAATTCAGACAC | + |
Preference number: 6 (lower is better) Translates to: WLLSTVQSLKSS*VHVQGDFQFRH Trigger: GTGTCTGAATTGGAAATCGCCTTGAACATGGACCCAGCTGCTTTTCAGACTCTGTACTGTGCTGAGAAGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171362.2 |