RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TSTD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000103711

Ensembl transcript IDs: ENSMUST00000171362.2

Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp TATTTGAGTTTTTCATGTGTGAAGCACTACAAGGATTTGCCTAGCCCAGCAAGGGCCAGTTGTGTGGCCTaGAGACCCCGCCTGCCCATC +
Preference number: 4 (lower is better)
Translates to: YLSFSCVKHYKDLPSPARASCVA*RPRLPI
Trigger: GATGGGCAGGCGGGGTCTCCAGGCCACACAACTGGC...CCTTGCTGGGCTAGGCAAATCCTTGTAGTGCTTCACACATGAAAAACTCAAATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171362.2
CDS-3UTR GCA 90 bp TATTTGAGTTTTTCATGTGTGAAGCACTACAAGGATTTGCCTAGCCCAGCAAGGCACAGGGATGTTGAGTaGCCCAGGAATGGTACCAGC +
Preference number: 4 (lower is better)
Translates to: YLSFSCVKHYKDLPSPARHRDVE*PRNGTS
Trigger: GCTGGTACCATTCCTGGGGCACTCAACATCCCTGTG...CCTTGCTGGGCTAGGCAAATCCTTGTAGTGCTTCACACATGAAAAACTCAAATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000171362.2
CDS-3UTR CCA 90 bp ACTTTTTATTTGAGTTTTTCATGTGTGAAGCACTACAAGGATTTGCCTAGCCCACTTGTGCCAGTTGTGTaGCCTGGAGACCCCGCCTGC +
Preference number: 4 (lower is better)
Translates to: TFYLSFSCVKHYKDLPSPLVPVV*PGDPAC
Trigger: GCAGGCGGGGTCTCCAGGCCACACAACTGGCACAAG...TGGGCTAGGCAAATCCTTGTAGTGCTTCACACATGAAAAACTCAAATAAAAAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000171362.2
CDS-3UTR TCA 90 bp TATTTGAGTTTTTCATGTGTGAAGCACTACAAGGATTTGCCTAGCCCAGCAAGGGCACAGTACAGAGTCTaGAAAGCAGCTGGGTCCATG +
Preference number: 4 (lower is better)
Translates to: YLSFSCVKHYKDLPSPARAQYRV*KAAGSM
Trigger: CATGGACCCAGCTGCTTTTCAGACTCTGTACTGTGC...CCTTGCTGGGCTAGGCAAATCCTTGTAGTGCTTCACACATGAAAAACTCAAATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000171362.2
CDS-3UTR CCA 90 bp ACTTTTTATTTGAGTTTTTCATGTGTGAAGCACTACAAGGATTTGCCTAGCCCAGAACGTCGAAGAGCCTaGCCCTGCCTGAGGCTACGA +
Preference number: 4 (lower is better)
Translates to: TFYLSFSCVKHYKDLPSPERRRA*PCLRLR
Trigger: TCGTAGCCTCAGGCAGGGCCAGGCTCTTCGACGTTC...TGGGCTAGGCAAATCCTTGTAGTGCTTCACACATGAAAAACTCAAATAAAAAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000171362.2
CDS-3UTR GCA 90 bp ACTTTTTATTTGAGTTTTTCATGTGTGAAGCACTACAAGGATTTGCCTAGCCCAAGGAATGGTACCAGCTaGTGCCTCCTCTGGAGATCG +
Preference number: 4 (lower is better)
Translates to: TFYLSFSCVKHYKDLPSPRNGTS*CLLWRS
Trigger: CGATCTCCAGAGGAGGCAGCAGCTGGTACCATTCCT...TGGGCTAGGCAAATCCTTGTAGTGCTTCACACATGAAAAACTCAAATAAAAAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000171362.2
CDS-3UTR GCA 90 bp ACTTTTTATTTGAGTTTTTCATGTGTGAAGCACTACAAGGATTTGCCTAGCCCACCTGGAGACCCCGCCTaGCCATCTGACAGAAGAAAA +
Preference number: 4 (lower is better)
Translates to: TFYLSFSCVKHYKDLPSPPGDPA*PSDRRK
Trigger: TTTTCTTCTGTCAGATGGGCAGGCGGGGTCTCCAGG...TGGGCTAGGCAAATCCTTGTAGTGCTTCACACATGAAAAACTCAAATAAAAAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000171362.2
CDS-3UTR CCA 90 bp ACTTTTTATTTGAGTTTTTCATGTGTGAAGCACTACAAGGATTTGCCTAGCCCAAGCTGCTGCCTCCTCTaGAGATCGAACGTCGAAGAG +
Preference number: 4 (lower is better)
Translates to: TFYLSFSCVKHYKDLPSPSCCLL*RSNVEE
Trigger: CTCTTCGACGTTCGATCTCCAGAGGAGGCAGCAGCT...TGGGCTAGGCAAATCCTTGTAGTGCTTCACACATGAAAAACTCAAATAAAAAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000171362.2
CDS-3UTR GCA 90 bp ACTTTTTATTTGAGTTTTTCATGTGTGAAGCACTACAAGGATTTGCCTAGCCCAATAGCCAAGACCTTGTaGCAGTTGTGTGGCCTGGAG +
Preference number: 4 (lower is better)
Translates to: TFYLSFSCVKHYKDLPSPIAKTL*QLCGLE
Trigger: CTCCAGGCCACACAACTGGCACAAGGTCTTGGCTAT...TGGGCTAGGCAAATCCTTGTAGTGCTTCACACATGAAAAACTCAAATAAAAAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000171362.2
CDS-3UTR TCA 90 bp ACTTTTTATTTGAGTTTTTCATGTGTGAAGCACTACAAGGATTTGCCTAGCCCACCCCGCCTGCCCATCTaGCAGAAGAAAATAAGATTC +
Preference number: 4 (lower is better)
Translates to: TFYLSFSCVKHYKDLPSPPRLPI*QKKIRF
Trigger: GAATCTTATTTTCTTCTGTCAGATGGGCAGGCGGGG...TGGGCTAGGCAAATCCTTGTAGTGCTTCACACATGAAAAACTCAAATAAAAAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000171362.2
CDS-3UTR CCA 90 bp ACTTTTTATTTGAGTTTTTCATGTGTGAAGCACTACAAGGATTTGCCTAGCCCAAGTCTGAAAAGCAGCTaGGTCCATGTTCAAGGCGAT +
Preference number: 4 (lower is better)
Translates to: TFYLSFSCVKHYKDLPSPSLKSS*VHVQGD
Trigger: ATCGCCTTGAACATGGACCCAGCTGCTTTTCAGACT...TGGGCTAGGCAAATCCTTGTAGTGCTTCACACATGAAAAACTCAAATAAAAAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000171362.2
CDS CCA 90 bp TGGTACCAGCTGCTGCCTCCTCTGGAGATCGAACGTCGAAGAGCCTaGCCCTGCCTGAGGCTACGAGTGAACGGAGCTCAGAGAAGGAGA +
Preference number: 5 (lower is better)
Translates to: WYQLLPPLEIERRRA*PCLRLRVNGAQRRR
Trigger: TCTCCTTCTCTGAGCTCCGTTCACTCGTAGCCTCAGGCAGGGCCAGGCTCTTCGACGTTCGATCTCCAGAGGAGGCAGCAGCTGGTACCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171362.2
CDS GCA 90 bp CAATTCAGACACAGGGATGTTGAGTGCCCCAGGAATGGTACCAGCTaGTGCCTCCTCTGGAGATCGAACGTCGAAGAGCCTGGCCCTGCC +
Preference number: 5 (lower is better)
Translates to: QFRHRDVECPRNGTS*CLLWRSNVEEPGPA
Trigger: GGCAGGGCCAGGCTCTTCGACGTTCGATCTCCAGAGGAGGCAGCAGCTGGTACCATTCCTGGGGCACTCAACATCCCTGTGTCTGAATTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171362.2
CDS GCA 90 bp GTCCATGTTCAAGGCGATTTCCAATTCAGACACAGGGATGTTGAGTaGCCCAGGAATGGTACCAGCTGCTGCCTCCTCTGGAGATCGAAC +
Preference number: 5 (lower is better)
Translates to: VHVQGDFQFRHRDVE*PRNGTSCCLLWRSN
Trigger: GTTCGATCTCCAGAGGAGGCAGCAGCTGGTACCATTCCTGGGGCACTCAACATCCCTGTGTCTGAATTGGAAATCGCCTTGAACATGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171362.2
CDS TCA 90 bp AGACCTTGTGCCAGTTGTGTGGCCTGGAGACCCCGCCTGCCCATCTaGCAGAAGAAAATAAGATTCTTGTCTTCTAGCTTTGGCTTCTCA +
Preference number: 5 (lower is better)
Translates to: RPCASCVAWRPRLPI*QKKIRFLSSSFGFS
Trigger: TGAGAAGCCAAAGCTAGAAGACAAGAATCTTATTTTCTTCTGTCAGATGGGCAGGCGGGGTCTCCAGGCCACACAACTGGCACAAGGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171362.2
CDS-3UTR CAA 90 bp ACTTTTTATTTGAGTTTTTCATGTGTGAAGCACTACAAGGATTTGCCTAGCCCATTCCTGCAGCCGCACTaGTGTGACTGTGACGCAGAA +
Preference number: 5 (lower is better)
Translates to: TFYLSFSCVKHYKDLPSPFLQPH*CDCDAE
Trigger: TTCTGCGTCACAGTCACACAAGTGCGGCTGCAGGAA...TGGGCTAGGCAAATCCTTGTAGTGCTTCACACATGAAAAACTCAAATAAAAAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000171362.2
CDS-3UTR CAA 90 bp TATTTGAGTTTTTCATGTGTGAAGCACTACAAGGATTTGCCTAGCCCAGCAAGGTCTTGTCTTCTAGCTTaGGCTTCTCAGCACAGTACA +
Preference number: 5 (lower is better)
Translates to: YLSFSCVKHYKDLPSPARSCLLA*ASQHST
Trigger: TGTACTGTGCTGAGAAGCCAAAGCTAGAAGACAAGA...CCTTGCTGGGCTAGGCAAATCCTTGTAGTGCTTCACACATGAAAAACTCAAATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000171362.2
CDS CAA 72 bp CCCGGCATAGTTCCGAGCCCCTGTATAGCCAAGACCTaGTGCCAGTTGTGTGGCCTGGAGACCCCGCCTGCC +
Preference number: 6 (lower is better)
Translates to: PGIVPSPCIAKT*CQLCGLETPPA
Trigger: GGCAGGCGGGGTCTCCAGGCCACACAACTGGCACAAGGTCTTGGCTATACAGGGGCTCGGAACTATGCCGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171362.2
CDS CCA 72 bp CTGCTGCCTCCTCTGGAGATCGAACGTCGAAGAGCCTaGCCCTGCCTGAGGCTACGAGTGAACGGAGCTCAG +
Preference number: 6 (lower is better)
Translates to: LLPPLEIERRRA*PCLRLRVNGAQ
Trigger: CTGAGCTCCGTTCACTCGTAGCCTCAGGCAGGGCCAGGCTCTTCGACGTTCGATCTCCAGAGGAGGCAGCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171362.2
CDS GCA 72 bp CCTCCTCTGGAGATCGAACGTCGAAGAGCCTGGCCCTaGCTGAGGCTACGAGTGAACGGAGCTCAGAGAAGG +
Preference number: 6 (lower is better)
Translates to: PPLEIERRRAWP*LRLRVNGAQRR
Trigger: CCTTCTCTGAGCTCCGTTCACTCGTAGCCTCAGGCAGGGCCAGGCTCTTCGACGTTCGATCTCCAGAGGAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171362.2
CDS CAA 72 bp GTTCCGAGCCCCTGTATAGCCAAGACCTTGTGCCAGTaGTGTGGCCTGGAGACCCCGCCTGCCCATCTGACA +
Preference number: 6 (lower is better)
Translates to: VPSPCIAKTLCQ*CGLETPPAHLT
Trigger: TGTCAGATGGGCAGGCGGGGTCTCCAGGCCACACAACTGGCACAAGGTCTTGGCTATACAGGGGCTCGGAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171362.2
CDS GCA 72 bp AGGGATGTTGAGTGCCCCAGGAATGGTACCAGCTGCTaGCTCCTCTGGAGATCGAACGTCGAAGAGCCTGGC +
Preference number: 6 (lower is better)
Translates to: RDVECPRNGTSC*LLWRSNVEEPG
Trigger: GCCAGGCTCTTCGACGTTCGATCTCCAGAGGAGGCAGCAGCTGGTACCATTCCTGGGGCACTCAACATCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171362.2
CDS CCA 72 bp GAGCCCCTGTATAGCCAAGACCTTGTGCCAGTTGTGTaGCCTGGAGACCCCGCCTGCCCATCTGACAGAAGA +
Preference number: 6 (lower is better)
Translates to: EPLYSQDLVPVV*PGDPACPSDRR
Trigger: TCTTCTGTCAGATGGGCAGGCGGGGTCTCCAGGCCACACAACTGGCACAAGGTCTTGGCTATACAGGGGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171362.2
CDS GCA 72 bp CACAGGGATGTTGAGTGCCCCAGGAATGGTACCAGCTaGTGCCTCCTCTGGAGATCGAACGTCGAAGAGCCT +
Preference number: 6 (lower is better)
Translates to: HRDVECPRNGTS*CLLWRSNVEEP
Trigger: AGGCTCTTCGACGTTCGATCTCCAGAGGAGGCAGCAGCTGGTACCATTCCTGGGGCACTCAACATCCCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171362.2
CDS CCA 72 bp TGGCTTCTCAGCACAGTACAGAGTCTGAAAAGCAGCTaGGTCCATGTTCAAGGCGATTTCCAATTCAGACAC +
Preference number: 6 (lower is better)
Translates to: WLLSTVQSLKSS*VHVQGDFQFRH
Trigger: GTGTCTGAATTGGAAATCGCCTTGAACATGGACCCAGCTGCTTTTCAGACTCTGTACTGTGCTGAGAAGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171362.2