RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TSSK6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000047654

Ensembl transcript IDs: ENSMUST00000050373.7

Found 90 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGCCGCCGCCGTGGGGGAAGGGGAAGGGACAGGACGCGTGCGCAGTaGCGCGCGGCGACTTCGCGGGTTTCCCGAAGCTCGCCCTTCGCG +
Preference number: 1 (lower is better)
Translates to: GRRRGGRGRDRTRAQ*RAATSRVSRSSPFA
Trigger: CGCGAAGGGCGAGCTTCGGGAAACCCGCGAAGTCGCCGCGCGCCACTGCGCACGCGTCCTGTCCCTTCCCCTTCCCCCACGGCGGCGGCC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
3UTR GCA 90 bp CTCAGAGGGCCGCCGCCGTGGGGGAAGGGGAAGGGACAGGACGCGTaGGCAGTGGCGCGCGGCGACTTCGCGGGTTTCCCGAAGCTCGCC +
Preference number: 1 (lower is better)
Translates to: LRGPPPWGKGKGQDA*AVARGDFAGFPKLA
Trigger: GGCGAGCTTCGGGAAACCCGCGAAGTCGCCGCGCGCCACTGCGCACGCGTCCTGTCCCTTCCCCTTCCCCCACGGCGGCGGCCCTCTGAG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
3UTR GCA 90 bp TTGCGCCCCTCCCGGGGCCTTCTCGCCAGAAATCGAGGATGCGCATaGGCTCTCCAGCAATCAGTTTGTGCAGGAGGAATCAGAACCCAA +
Preference number: 1 (lower is better)
Translates to: LRPSRGLLARNRGCA*ALQQSVCAGGIRTQ
Trigger: TTGGGTTCTGATTCCTCCTGCACAAACTGATTGCTGGAGAGCGCATGCGCATCCTCGATTTCTGGCGAGAAGGCCCCGGGAGGGGCGCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
3UTR GCA 90 bp CAACAGCTCATTCTGCGCAGGCGCAATGCTTCTCTCTCTTCTCTTTaGGCCCCTCCCGGGGCCTTCTCGCCAGAAATCGAGGATGCGCAT +
Preference number: 1 (lower is better)
Translates to: QQLILRRRNASLSSL*APPGAFSPEIEDAH
Trigger: ATGCGCATCCTCGATTTCTGGCGAGAAGGCCCCGGGAGGGGCGCAAAGAGAAGAGAGAGAAGCATTGCGCCTGCGCAGAATGAGCTGTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
3UTR GCA 90 bp TTCTCTTTGCGCCCCTCCCGGGGCCTTCTCGCCAGAAATCGAGGATaGGCATGCGCTCTCCAGCAATCAGTTTGTGCAGGAGGAATCAGA +
Preference number: 1 (lower is better)
Translates to: FSLRPSRGLLARNRG*ACALQQSVCAGGIR
Trigger: TCTGATTCCTCCTGCACAAACTGATTGCTGGAGAGCGCATGCGCATCCTCGATTTCTGGCGAGAAGGCCCCGGGAGGGGCGCAAAGAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
3UTR GCA 90 bp CAAGGAAGAGCGAATTTATTGCAGGTTCCAACCTGGAACTTAGCGTaGACGGCTGGCCCACGGTTTCTCTGTAGCATGGCAACCCACCGT +
Preference number: 1 (lower is better)
Translates to: QGRANLLQVPTWNLA*TAGPRFLCSMATHR
Trigger: ACGGTGGGTTGCCATGCTACAGAGAAACCGTGGGCCAGCCGTGCACGCTAAGTTCCAGGTTGGAACCTGCAATAAATTCGCTCTTCCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
3UTR-3UTR CCA 90 bp CTCCCGGGGCCTTCTCGCCAGAAATCGAGGATGCGCATGCGCTCTCCAGCAATCAGAGGGCCGCCGCCGTaGGGGAAGGGGAAGGGACAG +
Preference number: 2 (lower is better)
Translates to: LPGPSRQKSRMRMRSPAIRGPPP*GKGKGQ
Trigger: CTGTCCCTTCCCCTTCCCCCACGGCGGCGGCCCTCT...GATTGCTGGAGAGCGCATGCGCATCCTCGATTTCTGGCGAGAAGGCCCCGGGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
3UTR-3UTR GCA 90 bp ATTGCAGGTTCCAACCTGGAACTTAGCGTGCACGGCTGGCCCACGGTTTCTCTGGCCGCCCTGGCTCTGTaGCTGGTGCGGCGGGAACAG +
Preference number: 2 (lower is better)
Translates to: IAGSNLELSVHGWPTVSLAALAL*LVRREQ
Trigger: CTGTTCCCGCCGCACCAGGCACAGAGCCAGGGCGGC...CAGAGAAACCGTGGGCCAGCCGTGCACGCTAAGTTCCAGGTTGGAACCTGCAAT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
3UTR-3UTR CCA 90 bp TTCTCTCTCTTCTCTTTGCGCCCCTCCCGGGGCCTTCTCGCCAGAAATCGAGGACCCTGGCTCTGTGCCTaGTGCGGCGGGAACAGCGAG +
Preference number: 2 (lower is better)
Translates to: FSLFSLRPSRGLLARNRGPWLCA*CGGNSE
Trigger: CTCGCTGTTCCCGCCGCACCAGGCACAGAGCCAGGG...TCCTCGATTTCTGGCGAGAAGGCCCCGGGAGGGGCGCAAAGAGAAGAGAGAGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
3UTR CAA 90 bp GCAACAGCTCATTCTGCGCAGGCGCAATGCTTCTCTCTCTTCTCTTaGCGCCCCTCCCGGGGCCTTCTCGCCAGAAATCGAGGATGCGCA +
Preference number: 2 (lower is better)
Translates to: ATAHSAQAQCFSLFS*RPSRGLLARNRGCA
Trigger: TGCGCATCCTCGATTTCTGGCGAGAAGGCCCCGGGAGGGGCGCAAAGAGAAGAGAGAGAAGCATTGCGCCTGCGCAGAATGAGCTGTTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
3UTR CCA 72 bp CGTGGGGGAAGGGGAAGGGACAGGACGCGTGCGCAGTaGCGCGCGGCGACTTCGCGGGTTTCCCGAAGCTCG +
Preference number: 3 (lower is better)
Translates to: RGGRGRDRTRAQ*RAATSRVSRSS
Trigger: CGAGCTTCGGGAAACCCGCGAAGTCGCCGCGCGCCACTGCGCACGCGTCCTGTCCCTTCCCCTTCCCCCACG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
3UTR CCA 72 bp CAGAACCCAACAGCAGGCCTCAGAGGGCCGCCGCCGTaGGGGAAGGGGAAGGGACAGGACGCGTGCGCAGTG +
Preference number: 3 (lower is better)
Translates to: QNPTAGLRGPPP*GKGKGQDACAV
Trigger: CACTGCGCACGCGTCCTGTCCCTTCCCCTTCCCCCACGGCGGCGGCCCTCTGAGGCCTGCTGTTGGGTTCTG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
3UTR GCA 72 bp CGCCCCTCCCGGGGCCTTCTCGCCAGAAATCGAGGATaGGCATGCGCTCTCCAGCAATCAGTTTGTGCAGGA +
Preference number: 3 (lower is better)
Translates to: RPSRGLLARNRG*ACALQQSVCAG
Trigger: TCCTGCACAAACTGATTGCTGGAGAGCGCATGCGCATCCTCGATTTCTGGCGAGAAGGCCCCGGGAGGGGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
3UTR GCA 72 bp ATTCTGCGCAGGCGCAATGCTTCTCTCTCTTCTCTTTaGGCCCCTCCCGGGGCCTTCTCGCCAGAAATCGAG +
Preference number: 3 (lower is better)
Translates to: ILRRRNASLSSL*APPGAFSPEIE
Trigger: CTCGATTTCTGGCGAGAAGGCCCCGGGAGGGGCGCAAAGAGAAGAGAGAGAAGCATTGCGCCTGCGCAGAAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
3UTR GCA 72 bp TCGAGGATGCGCATGCGCTCTCCAGCAATCAGTTTGTaGAGGAGGAATCAGAACCCAACAGCAGGCCTCAGA +
Preference number: 3 (lower is better)
Translates to: SRMRMRSPAISL*RRNQNPTAGLR
Trigger: TCTGAGGCCTGCTGTTGGGTTCTGATTCCTCCTGCACAAACTGATTGCTGGAGAGCGCATGCGCATCCTCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
3UTR GCA 72 bp GCGAATTTATTGCAGGTTCCAACCTGGAACTTAGCGTaGACGGCTGGCCCACGGTTTCTCTGTAGCATGGCA +
Preference number: 3 (lower is better)
Translates to: ANLLQVPTWNLA*TAGPRFLCSMA
Trigger: TGCCATGCTACAGAGAAACCGTGGGCCAGCCGTGCACGCTAAGTTCCAGGTTGGAACCTGCAATAAATTCGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
3UTR CCA 72 bp TTGCAAGGAAGAGCGAATTTATTGCAGGTTCCAACCTaGAACTTAGCGTGCACGGCTGGCCCACGGTTTCTC +
Preference number: 3 (lower is better)
Translates to: LQGRANLLQVPT*NLACTAGPRFL
Trigger: GAGAAACCGTGGGCCAGCCGTGCACGCTAAGTTCCAGGTTGGAACCTGCAATAAATTCGCTCTTCCTTGCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS-3UTR GCA 90 bp GCCGCCGTGGGGGAAGGGGAAGGGACAGGACGCGTGCGCAGTGGCGCGCGGCGACCCGTTGCGCTGCACTaGCTGCAGCAGGTCGGTGGC +
Preference number: 4 (lower is better)
Translates to: AAVGEGEGTGRVRSGARRPVALH*LQQVGG
Trigger: GCCACCGACCTGCTGCAGGCAGTGCAGCGCAACGGG...TCGCCGCGCGCCACTGCGCACGCGTCCTGTCCCTTCCCCTTCCCCCACGGCGGC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS-3UTR TCA 90 bp GTGGCGCGCGGCGACTTCGCGGGTTTCCCGAAGCTCGCCCTTCGCGCGTGCGCCCAGGAGCACCTCAGGTaGCGCATACGCGGCCGAGCC +
Preference number: 4 (lower is better)
Translates to: VARGDFAGFPKLALRACAQEHLR*RIRGRA
Trigger: GGCTCGGCCGCGTATGCGTCACCTGAGGTGCTCCTG...GGCGCACGCGCGAAGGGCGAGCTTCGGGAAACCCGCGAAGTCGCCGCGCGCCAC
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS-3UTR GCA 90 bp GTGCGCCGCCCTGGCTCTGTGCCTGGTGCGGCGGGAACAGCGAGAACCCCGGCTAAGAGTTCGCGCGCCTaGGACCCCGGGATGCGCCCG +
Preference number: 4 (lower is better)
Translates to: VRRPGSVPGAAGTARTPAKSSRA*DPGMRP
Trigger: CGGGCGCATCCCGGGGTCGCAGGCGCGCGAACTCTT...AGCCGGGGTTCTCGCTGTTCCCGCCGCACCAGGCACAGAGCCAGGGCGGCGCAC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS-3UTR CCA 90 bp CGGCGACTTCGCGGGTTTCCCGAAGCTCGCCCTTCGCGCGTGCGCCGCCCTGGCGGTGGTGCTCAGGTCTaGGTAGCCGTGCGCCTGGCG +
Preference number: 4 (lower is better)
Translates to: RRLRGFPEARPSRVRRPGGGAQV*VAVRLA
Trigger: CGCCAGGCGCACGGCTACCCAGACCTGAGCACCACC...GCCAGGGCGGCGCACGCGCGAAGGGCGAGCTTCGGGAAACCCGCGAAGTCGCCG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS-3UTR TCA 90 bp GCCGCCGTGGGGGAAGGGGAAGGGACAGGACGCGTGCGCAGTGGCGCGCGGCGAGAGGCAGGAACTTGTTaGCGAAGTCCGGAGGCGCTC +
Preference number: 4 (lower is better)
Translates to: AAVGEGEGTGRVRSGARREAGTC*RSPEAL
Trigger: GAGCGCCTCCGGACTTCGTCAACAAGTTCCTGCCTC...TCGCCGCGCGCCACTGCGCACGCGTCCTGTCCCTTCCCCTTCCCCCACGGCGGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS-3UTR CCA 90 bp CCGCCGTGGGGGAAGGGGAAGGGACAGGACGCGTGCGCAGTGGCGCGCGGCGACGTACTCCCCGCAGGATaGACAGCTCTCGAGGCAGGA +
Preference number: 4 (lower is better)
Translates to: PPWGKGKGQDACAVARGDVLPAG*TALEAG
Trigger: TCCTGCCTCGAGAGCTGTCCATCCTGCGGGGAGTAC...GTCGCCGCGCGCCACTGCGCACGCGTCCTGTCCCTTCCCCTTCCCCCACGGCGG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS-3UTR TCA 90 bp GTGGCGCGCGGCGACTTCGCGGGTTTCCCGAAGCTCGCCCTTCGCGCGTGCGCCGGCGGTCCACCACCTTaGTGGCCACCGTCCCTTTAT +
Preference number: 4 (lower is better)
Translates to: VARGDFAGFPKLALRACAGGPPP*WPPSLY
Trigger: ATAAAGGGACGGTGGCCATCAAGGTGGTGGACCGCC...GGCGCACGCGCGAAGGGCGAGCTTCGGGAAACCCGCGAAGTCGCCGCGCGCCAC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS-3UTR GCA 90 bp GCCGCCGTGGGGGAAGGGGAAGGGACAGGACGCGTGCGCAGTGGCGCGCGGCGATCACCTTGGAGTAGCTaGCCTCACCTATCGTGCGGC +
Preference number: 4 (lower is better)
Translates to: AAVGEGEGTGRVRSGARRSPWSS*PHLSCG
Trigger: GCCGCACGATAGGTGAGGGCAGCTACTCCAAGGTGA...TCGCCGCGCGCCACTGCGCACGCGTCCTGTCCCTTCCCCTTCCCCCACGGCGGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS-3UTR GCA 90 bp CCCGGGGCCTTCTCGCCAGAAATCGAGGATGCGCATGCGCTCTCCAGCAATCAGTTGCGCTGCACTGCCTaGAGCAGGTCGGTGGCTGCT +
Preference number: 4 (lower is better)
Translates to: PGAFSPEIEDAHALSSNQLRCTA*SRSVAA
Trigger: AGCAGCCACCGACCTGCTGCAGGCAGTGCAGCGCAA...CTGATTGCTGGAGAGCGCATGCGCATCCTCGATTTCTGGCGAGAAGGCCCCGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS-3UTR CCA 90 bp CGGCGACTTCGCGGGTTTCCCGAAGCTCGCCCTTCGCGCGTGCGCCGCCCTGGCTCCCTTTATACTTCTTaGAGGTGGCCACTTTCACCT +
Preference number: 4 (lower is better)
Translates to: RRLRGFPEARPSRVRRPGSLYTS*RWPLSP
Trigger: AGGTGAAAGTGGCCACCTCCAAGAAGTATAAAGGGA...GCCAGGGCGGCGCACGCGCGAAGGGCGAGCTTCGGGAAACCCGCGAAGTCGCCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS-3UTR CCA 90 bp CCTCCCGGGGCCTTCTCGCCAGAAATCGAGGATGCGCATGCGCTCTCCAGCAATCCTGCAGCAGGTCGGTaGCTGCTGCCTCCATCACGA +
Preference number: 4 (lower is better)
Translates to: PPGAFSPEIEDAHALSSNPAAGR*LLPPSR
Trigger: TCGTGATGGAGGCAGCAGCCACCGACCTGCTGCAGG...ATTGCTGGAGAGCGCATGCGCATCCTCGATTTCTGGCGAGAAGGCCCCGGGAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS-3UTR GCA 90 bp CCCGGGGCCTTCTCGCCAGAAATCGAGGATGCGCATGCGCTCTCCAGCAATCAGTGTACGATGTGCGGGTaGCGTACTCCCCGCAGGATG +
Preference number: 4 (lower is better)
Translates to: PGAFSPEIEDAHALSSNQCTMCG*RTPRRM
Trigger: CATCCTGCGGGGAGTACGGCACCCGCACATCGTACA...CTGATTGCTGGAGAGCGCATGCGCATCCTCGATTTCTGGCGAGAAGGCCCCGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS-3UTR GCA 90 bp CCCTCCCGGGGCCTTCTCGCCAGAAATCGAGGATGCGCATGCGCTCTCCAGCAACAGCAGGTCGGTGGCTaGTGCCTCCATCACGATGTA +
Preference number: 4 (lower is better)
Translates to: PSRGLLARNRGCACALQQQQVGG*CLHHDV
Trigger: TACATCGTGATGGAGGCAGCAGCCACCGACCTGCTG...TTGCTGGAGAGCGCATGCGCATCCTCGATTTCTGGCGAGAAGGCCCCGGGAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS-3UTR GCA 90 bp TTCTCTCTCTTCTCTTTGCGCCCCTCCCGGGGCCTTCTCGCCAGAAATCGAGGAATGCGCCCGTTGCGCTaGACTGCCTGCAGCAGGTCG +
Preference number: 4 (lower is better)
Translates to: FSLFSLRPSRGLLARNRGMRPLR*TACSRS
Trigger: CGACCTGCTGCAGGCAGTGCAGCGCAACGGGCGCAT...TCCTCGATTTCTGGCGAGAAGGCCCCGGGAGGGGCGCAAAGAGAAGAGAGAGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS-3UTR GCA 90 bp ATTGCAGGTTCCAACCTGGAACTTAGCGTGCACGGCTGGCCCACGGTTTCTCTGCCGGGATGCGCCCGTTaGGCTGCACTGCCTGCAGCA +
Preference number: 4 (lower is better)
Translates to: IAGSNLELSVHGWPTVSLPGCAR*AALPAA
Trigger: TGCTGCAGGCAGTGCAGCGCAACGGGCGCATCCCGG...CAGAGAAACCGTGGGCCAGCCGTGCACGCTAAGTTCCAGGTTGGAACCTGCAAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS-3UTR CCA 90 bp CAACAGCTCATTCTGCGCAGGCGCAATGCTTCTCTCTCTTCTCTTTGCGCCCCTAGCACGCCGCGCTTCTaGCGCCGGGGTAGGCCAGCA +
Preference number: 4 (lower is better)
Translates to: QQLILRRRNASLSSLCAPSTPRF*RRGRPA
Trigger: TGCTGGCCTACCCCGGCGCCAGAAGCGCGGCGTGCT...AGGGGCGCAAAGAGAAGAGAGAGAAGCATTGCGCCTGCGCAGAATGAGCTGTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS-3UTR TCA 90 bp GCTCTCCAGCAATCAGTTTGTGCAGGAGGAATCAGAACCCAACAGCAGGCCTCAGCCGGGCAGACGGGCTaGACTGTAGCAGCTCGGCGA +
Preference number: 4 (lower is better)
Translates to: ALQQSVCAGGIRTQQQASAGQTG*TVAARR
Trigger: TCGCCGAGCTGCTACAGTTCAGCCCGTCTGCCCGGC...TGAGGCCTGCTGTTGGGTTCTGATTCCTCCTGCACAAACTGATTGCTGGAGAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS-3UTR GCA 90 bp CTCCCGGGGCCTTCTCGCCAGAAATCGAGGATGCGCATGCGCTCTCCAGCAATCTGCCCTCACCTATCGTaGGGCCCAGCTTATAGCCAA +
Preference number: 4 (lower is better)
Translates to: LPGPSRQKSRMRMRSPAICPHLS*GPAYSQ
Trigger: TTGGCTATAAGCTGGGCCGCACGATAGGTGAGGGCA...GATTGCTGGAGAGCGCATGCGCATCCTCGATTTCTGGCGAGAAGGCCCCGGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
3UTR CAA 72 bp CATTCTGCGCAGGCGCAATGCTTCTCTCTCTTCTCTTaGCGCCCCTCCCGGGGCCTTCTCGCCAGAAATCGA +
Preference number: 4 (lower is better)
Translates to: HSAQAQCFSLFS*RPSRGLLARNR
Trigger: TCGATTTCTGGCGAGAAGGCCCCGGGAGGGGCGCAAAGAGAAGAGAGAGAAGCATTGCGCCTGCGCAGAATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS-3UTR GCA 90 bp TGCAACAGCTCATTCTGCGCAGGCGCAATGCTTCTCTCTCTTCTCTTTGCGCCCCACTTGAGGTCGCGGTaGACCAGGTGGTGGTCGTGC +
Preference number: 4 (lower is better)
Translates to: CNSSFCAGAMLLSLLFAPHLRSR*TRWWSC
Trigger: GCACGACCACCACCTGGTGCACCGCGACCTCAAGTG...GGGCGCAAAGAGAAGAGAGAGAAGCATTGCGCCTGCGCAGAATGAGCTGTTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS-3UTR CCA 90 bp TCTCTTCTCTTTGCGCCCCTCCCGGGGCCTTCTCGCCAGAAATCGAGGATGCGCTGGCCACTTTCACCTTaGAGTAGCTGCCCTCACCTA +
Preference number: 4 (lower is better)
Translates to: SLLFAPLPGPSRQKSRMRWPLSP*SSCPHL
Trigger: TAGGTGAGGGCAGCTACTCCAAGGTGAAAGTGGCCA...GCGCATCCTCGATTTCTGGCGAGAAGGCCCCGGGAGGGGCGCAAAGAGAAGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS-3UTR CCA 90 bp CAACAGCTCATTCTGCGCAGGCGCAATGCTTCTCTCTCTTCTCTTTGCGCCCCTCCGAGCCGCAGTAGGTaGTGCTCAGGTCTGGGTAGC +
Preference number: 4 (lower is better)
Translates to: QQLILRRRNASLSSLCAPPSRSR*CSGLGS
Trigger: GCTACCCAGACCTGAGCACCACCTACTGCGGCTCGG...AGGGGCGCAAAGAGAAGAGAGAGAAGCATTGCGCCTGCGCAGAATGAGCTGTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS-3UTR CCA 90 bp TCTCTTCTCTTTGCGCCCCTCCCGGGGCCTTCTCGCCAGAAATCGAGGATGCGCTATACTTCTTGGAGGTaGCCACTTTCACCTTGGAGT +
Preference number: 4 (lower is better)
Translates to: SLLFAPLPGPSRQKSRMRYTSWR*PLSPWS
Trigger: ACTCCAAGGTGAAAGTGGCCACCTCCAAGAAGTATA...GCGCATCCTCGATTTCTGGCGAGAAGGCCCCGGGAGGGGCGCAAAGAGAAGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS-3UTR GCA 90 bp ATCGAGGATGCGCATGCGCTCTCCAGCAATCAGTTTGTGCAGGAGGAATCAGAACAGGTCGGTGGCTGCTaGCTCCATCACGATGTACAG +
Preference number: 4 (lower is better)
Translates to: IEDAHALSSNQFVQEESEQVGGC*LHHDVQ
Trigger: CTGTACATCGTGATGGAGGCAGCAGCCACCGACCTG...TTCTGATTCCTCCTGCACAAACTGATTGCTGGAGAGCGCATGCGCATCCTCGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS-3UTR CAA 90 bp GCCGCCGTGGGGGAAGGGGAAGGGACAGGACGCGTGCGCAGTGGCGCGCGGCGACCCGGGATGCGCCCGTaGCGCTGCACTGCCTGCAGC +
Preference number: 5 (lower is better)
Translates to: AAVGEGEGTGRVRSGARRPGMRP*RCTACS
Trigger: GCTGCAGGCAGTGCAGCGCAACGGGCGCATCCCGGG...TCGCCGCGCGCCACTGCGCACGCGTCCTGTCCCTTCCCCTTCCCCCACGGCGGC
77% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS GCA 90 bp CGCCCGCGATCTGCGAGAAGAGTTCGCGCGCCTGCGACCCCGGGATaGGCCCGTTGCGCTGCACTGCCTGCAGCAGGTCGGTGGCTGCTG +
Preference number: 5 (lower is better)
Translates to: RPRSARRVRAPATPG*ARCAALPAAGRWLL
Trigger: CAGCAGCCACCGACCTGCTGCAGGCAGTGCAGCGCAACGGGCGCATCCCGGGGTCGCAGGCGCGCGAACTCTTCTCGCAGATCGCGGGCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS-3UTR CAA 90 bp GCCGCCGCCGTGGGGGAAGGGGAAGGGACAGGACGCGTGCGCAGTGGCGCGCGGCGAGGCAGGAACTTGTaGACGAAGTCCGGAGGCGCT +
Preference number: 5 (lower is better)
Translates to: AAAVGEGEGTGRVRSGARRGRNL*TKSGGA
Trigger: AGCGCCTCCGGACTTCGTCAACAAGTTCCTGCCTCG...CCGCGCGCCACTGCGCACGCGTCCTGTCCCTTCCCCTTCCCCCACGGCGGCGGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS-3UTR CAA 90 bp GTGGCGCGCGGCGACTTCGCGGGTTTCCCGAAGCTCGCCCTTCGCGCGTGCGCCCGGCGGTCCACCACCTaGATGGCCACCGTCCCTTTA +
Preference number: 5 (lower is better)
Translates to: VARGDFAGFPKLALRACARRSTT*MATVPL
Trigger: TAAAGGGACGGTGGCCATCAAGGTGGTGGACCGCCG...GGCGCACGCGCGAAGGGCGAGCTTCGGGAAACCCGCGAAGTCGCCGCGCGCCAC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS-3UTR CAA 90 bp CGGCGACTTCGCGGGTTTCCCGAAGCTCGCCCTTCGCGCGTGCGCCGCCCTGGCCCGAAATCCGTGATCTaGACGCGGCGCTCGTCAGGG +
Preference number: 5 (lower is better)
Translates to: RRLRGFPEARPSRVRRPGPKSVI*TRRSSG
Trigger: CCCTGACGAGCGCCGCGTCAAGATCACGGATTTCGG...GCCAGGGCGGCGCACGCGCGAAGGGCGAGCTTCGGGAAACCCGCGAAGTCGCCG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS GCA 90 bp TCGCGCGCCTGCGACCCCGGGATGCGCCCGTTGCGCTGCACTGCCTaGAGCAGGTCGGTGGCTGCTGCCTCCATCACGATGTACAGCTTC +
Preference number: 5 (lower is better)
Translates to: SRACDPGMRPLRCTA*SRSVAAASITMYSF
Trigger: GAAGCTGTACATCGTGATGGAGGCAGCAGCCACCGACCTGCTGCAGGCAGTGCAGCGCAACGGGCGCATCCCGGGGTCGCAGGCGCGCGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS GCA 90 bp GAGTTCGCGCGCCTGCGACCCCGGGATGCGCCCGTTGCGCTGCACTaGCTGCAGCAGGTCGGTGGCTGCTGCCTCCATCACGATGTACAG +
Preference number: 5 (lower is better)
Translates to: EFARLRPRDAPVALH*LQQVGGCCLHHDVQ
Trigger: CTGTACATCGTGATGGAGGCAGCAGCCACCGACCTGCTGCAGGCAGTGCAGCGCAACGGGCGCATCCCGGGGTCGCAGGCGCGCGAACTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS GCA 90 bp GAGAAGAGTTCGCGCGCCTGCGACCCCGGGATGCGCCCGTTGCGCTaGACTGCCTGCAGCAGGTCGGTGGCTGCTGCCTCCATCACGATG +
Preference number: 5 (lower is better)
Translates to: EKSSRACDPGMRPLR*TACSRSVAAASITM
Trigger: CATCGTGATGGAGGCAGCAGCCACCGACCTGCTGCAGGCAGTGCAGCGCAACGGGCGCATCCCGGGGTCGCAGGCGCGCGAACTCTTCTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS GCA 90 bp TCTGCGAGAAGAGTTCGCGCGCCTGCGACCCCGGGATGCGCCCGTTaGGCTGCACTGCCTGCAGCAGGTCGGTGGCTGCTGCCTCCATCA +
Preference number: 5 (lower is better)
Translates to: SARRVRAPATPGCAR*AALPAAGRWLLPPS
Trigger: TGATGGAGGCAGCAGCCACCGACCTGCTGCAGGCAGTGCAGCGCAACGGGCGCATCCCGGGGTCGCAGGCGCGCGAACTCTTCTCGCAGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS CCA 90 bp CCAGGAGCACCTCAGGTGACGCATACGCGGCCGAGCCGCAGTAGGTaGTGCTCAGGTCTGGGTAGCCGTGCGCCTGGCGGCCGAAACCGA +
Preference number: 5 (lower is better)
Translates to: PGAPQVTHTRPSRSR*CSGLGSRAPGGRNR
Trigger: TCGGTTTCGGCCGCCAGGCGCACGGCTACCCAGACCTGAGCACCACCTACTGCGGCTCGGCCGCGTATGCGTCACCTGAGGTGCTCCTGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS GCA 90 bp GGAGCACCTCAGGTGACGCATACGCGGCCGAGCCGCAGTAGGTGGTaGTCAGGTCTGGGTAGCCGTGCGCCTGGCGGCCGAAACCGAAAT +
Preference number: 5 (lower is better)
Translates to: GAPQVTHTRPSRSRW*SGLGSRAPGGRNRN
Trigger: ATTTCGGTTTCGGCCGCCAGGCGCACGGCTACCCAGACCTGAGCACCACCTACTGCGGCTCGGCCGCGTATGCGTCACCTGAGGTGCTCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS-3UTR CAA 90 bp GCGCGGCGACTTCGCGGGTTTCCCGAAGCTCGCCCTTCGCGCGTGCGCCGCCCTATGTACAGCTTCCCATaGCACACTTCGATGAACTCG +
Preference number: 5 (lower is better)
Translates to: ARRLRGFPEARPSRVRRPMYSFP*HTSMNS
Trigger: CGAGTTCATCGAAGTGTGCAATGGGAAGCTGTACAT...AGGGCGGCGCACGCGCGAAGGGCGAGCTTCGGGAAACCCGCGAAGTCGCCGCGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS CCA 90 bp ACCCCGGGATGCGCCCGTTGCGCTGCACTGCCTGCAGCAGGTCGGTaGCTGCTGCCTCCATCACGATGTACAGCTTCCCATTGCACACTT +
Preference number: 5 (lower is better)
Translates to: TPGCARCAALPAAGR*LLPPSRCTASHCTL
Trigger: AAGTGTGCAATGGGAAGCTGTACATCGTGATGGAGGCAGCAGCCACCGACCTGCTGCAGGCAGTGCAGCGCAACGGGCGCATCCCGGGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS GCA 90 bp CGGGATGCGCCCGTTGCGCTGCACTGCCTGCAGCAGGTCGGTGGCTaGTGCCTCCATCACGATGTACAGCTTCCCATTGCACACTTCGAT +
Preference number: 5 (lower is better)
Translates to: RDAPVALHCLQQVGG*CLHHDVQLPIAHFD
Trigger: ATCGAAGTGTGCAATGGGAAGCTGTACATCGTGATGGAGGCAGCAGCCACCGACCTGCTGCAGGCAGTGCAGCGCAACGGGCGCATCCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS GCA 90 bp GATGCGCCCGTTGCGCTGCACTGCCTGCAGCAGGTCGGTGGCTGCTaGCTCCATCACGATGTACAGCTTCCCATTGCACACTTCGATGAA +
Preference number: 5 (lower is better)
Translates to: DAPVALHCLQQVGGC*LHHDVQLPIAHFDE
Trigger: TTCATCGAAGTGTGCAATGGGAAGCTGTACATCGTGATGGAGGCAGCAGCCACCGACCTGCTGCAGGCAGTGCAGCGCAACGGGCGCATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS GCA 90 bp TGGAGGTGGCCACTTTCACCTTGGAGTAGCTGCCCTCACCTATCGTaGGGCCCAGCTTATAGCCAAGTTCGCTCAGGAGTTTGTCGCCCG +
Preference number: 5 (lower is better)
Translates to: WRWPLSPWSSCPHLS*GPAYSQVRSGVCRP
Trigger: CGGGCGACAAACTCCTGAGCGAACTTGGCTATAAGCTGGGCCGCACGATAGGTGAGGGCAGCTACTCCAAGGTGAAAGTGGCCACCTCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS GCA 90 bp CCATTGCACACTTCGATGAACTCGAAAACGTGTACGATGTGCGGGTaGCGTACTCCCCGCAGGATGGACAGCTCTCGAGGCAGGAACTTG +
Preference number: 5 (lower is better)
Translates to: PLHTSMNSKTCTMCG*RTPRRMDSSRGRNL
Trigger: CAAGTTCCTGCCTCGAGAGCTGTCCATCCTGCGGGGAGTACGGCACCCGCACATCGTACACGTTTTCGAGTTCATCGAAGTGTGCAATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS-3UTR CAA 90 bp CAACAGCTCATTCTGCGCAGGCGCAATGCTTCTCTCTCTTCTCTTTGCGCCCCTTCTCGAGGCAGGAACTaGTTGACGAAGTCCGGAGGC +
Preference number: 5 (lower is better)
Translates to: QQLILRRRNASLSSLCAPSRGRN*LTKSGG
Trigger: GCCTCCGGACTTCGTCAACAAGTTCCTGCCTCGAGA...AGGGGCGCAAAGAGAAGAGAGAGAAGCATTGCGCCTGCGCAGAATGAGCTGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS TCA 90 bp CTGCTGCCTCCATCACGATGTACAGCTTCCCATTGCACACTTCGATaGACTCGAAAACGTGTACGATGTGCGGGTGCCGTACTCCCCGCA +
Preference number: 5 (lower is better)
Translates to: LLPPSRCTASHCTLR*TRKRVRCAGAVLPA
Trigger: TGCGGGGAGTACGGCACCCGCACATCGTACACGTTTTCGAGTTCATCGAAGTGTGCAATGGGAAGCTGTACATCGTGATGGAGGCAGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS CCA 90 bp TGGCCACCGTCCCTTTATACTTCTTGGAGGTGGCCACTTTCACCTTaGAGTAGCTGCCCTCACCTATCGTGCGGCCCAGCTTATAGCCAA +
Preference number: 5 (lower is better)
Translates to: WPPSLYTSWRWPLSP*SSCPHLSCGPAYSQ
Trigger: TTGGCTATAAGCTGGGCCGCACGATAGGTGAGGGCAGCTACTCCAAGGTGAAAGTGGCCACCTCCAAGAAGTATAAAGGGACGGTGGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS GCA 90 bp TCCCTTTATACTTCTTGGAGGTGGCCACTTTCACCTTGGAGTAGCTaGCCTCACCTATCGTGCGGCCCAGCTTATAGCCAAGTTCGCTCA +
Preference number: 5 (lower is better)
Translates to: SLYTSWRWPLSPWSS*PHLSCGPAYSQVRS
Trigger: TGAGCGAACTTGGCTATAAGCTGGGCCGCACGATAGGTGAGGGCAGCTACTCCAAGGTGAAAGTGGCCACCTCCAAGAAGTATAAAGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS GCA 72 bp TCGCGCGCCTGCGACCCCGGGATGCGCCCGTTGCGCTaGACTGCCTGCAGCAGGTCGGTGGCTGCTGCCTCC +
Preference number: 6 (lower is better)
Translates to: SRACDPGMRPLR*TACSRSVAAAS
Trigger: GGAGGCAGCAGCCACCGACCTGCTGCAGGCAGTGCAGCGCAACGGGCGCATCCCGGGGTCGCAGGCGCGCGA
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS GCA 72 bp ACGGCGCCCGCGATCTGCGAGAAGAGTTCGCGCGCCTaGGACCCCGGGATGCGCCCGTTGCGCTGCACTGCC +
Preference number: 6 (lower is better)
Translates to: TAPAICEKSSRA*DPGMRPLRCTA
Trigger: GGCAGTGCAGCGCAACGGGCGCATCCCGGGGTCGCAGGCGCGCGAACTCTTCTCGCAGATCGCGGGCGCCGT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS GCA 72 bp CGCCTGCGACCCCGGGATGCGCCCGTTGCGCTGCACTaGCTGCAGCAGGTCGGTGGCTGCTGCCTCCATCAC +
Preference number: 6 (lower is better)
Translates to: RLRPRDAPVALH*LQQVGGCCLHH
Trigger: GTGATGGAGGCAGCAGCCACCGACCTGCTGCAGGCAGTGCAGCGCAACGGGCGCATCCCGGGGTCGCAGGCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS GCA 72 bp AGAGTTCGCGCGCCTGCGACCCCGGGATGCGCCCGTTaGGCTGCACTGCCTGCAGCAGGTCGGTGGCTGCTG +
Preference number: 6 (lower is better)
Translates to: RVRAPATPGCAR*AALPAAGRWLL
Trigger: CAGCAGCCACCGACCTGCTGCAGGCAGTGCAGCGCAACGGGCGCATCCCGGGGTCGCAGGCGCGCGAACTCT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS GCA 72 bp TCTGCGAGAAGAGTTCGCGCGCCTGCGACCCCGGGATaGGCCCGTTGCGCTGCACTGCCTGCAGCAGGTCGG +
Preference number: 6 (lower is better)
Translates to: SARRVRAPATPG*ARCAALPAAGR
Trigger: CCGACCTGCTGCAGGCAGTGCAGCGCAACGGGCGCATCCCGGGGTCGCAGGCGCGCGAACTCTTCTCGCAGA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS CCA 72 bp CCTCAGGTGACGCATACGCGGCCGAGCCGCAGTAGGTaGTGCTCAGGTCTGGGTAGCCGTGCGCCTGGCGGC +
Preference number: 6 (lower is better)
Translates to: PQVTHTRPSRSR*CSGLGSRAPGG
Trigger: GCCGCCAGGCGCACGGCTACCCAGACCTGAGCACCACCTACTGCGGCTCGGCCGCGTATGCGTCACCTGAGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS CAA 72 bp AAGAGTTCGCGCGCCTGCGACCCCGGGATGCGCCCGTaGCGCTGCACTGCCTGCAGCAGGTCGGTGGCTGCT +
Preference number: 6 (lower is better)
Translates to: KSSRACDPGMRP*RCTACSRSVAA
Trigger: AGCAGCCACCGACCTGCTGCAGGCAGTGCAGCGCAACGGGCGCATCCCGGGGTCGCAGGCGCGCGAACTCTT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS CAA 90 bp ATCTGCGAGAAGAGTTCGCGCGCCTGCGACCCCGGGATGCGCCCGTaGCGCTGCACTGCCTGCAGCAGGTCGGTGGCTGCTGCCTCCATC +
Preference number: 6 (lower is better)
Translates to: ICEKSSRACDPGMRP*RCTACSRSVAAASI
Trigger: GATGGAGGCAGCAGCCACCGACCTGCTGCAGGCAGTGCAGCGCAACGGGCGCATCCCGGGGTCGCAGGCGCGCGAACTCTTCTCGCAGAT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS GCA 72 bp TGCGACCCCGGGATGCGCCCGTTGCGCTGCACTGCCTaGAGCAGGTCGGTGGCTGCTGCCTCCATCACGATG +
Preference number: 6 (lower is better)
Translates to: CDPGMRPLRCTA*SRSVAAASITM
Trigger: CATCGTGATGGAGGCAGCAGCCACCGACCTGCTGCAGGCAGTGCAGCGCAACGGGCGCATCCCGGGGTCGCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS TCA 72 bp GCGCCACCTGGCCCGCCGAGGGCCGGGCAGACGGGCTaGACTGTAGCAGCTCGGCGATCAAGGATTTGCATC +
Preference number: 6 (lower is better)
Translates to: APPGPPRAGQTG*TVAARRSRICI
Trigger: GATGCAAATCCTTGATCGCCGAGCTGCTACAGTTCAGCCCGTCTGCCCGGCCCTCGGCGGGCCAGGTGGCGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS CAA 72 bp CCCCGCAGGATGGACAGCTCTCGAGGCAGGAACTTGTaGACGAAGTCCGGAGGCGCTCGCCGGCGGTCCACC +
Preference number: 6 (lower is better)
Translates to: PRRMDSSRGRNL*TKSGGARRRST
Trigger: GGTGGACCGCCGGCGAGCGCCTCCGGACTTCGTCAACAAGTTCCTGCCTCGAGAGCTGTCCATCCTGCGGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS CAA 90 bp GGGTGCCGTACTCCCCGCAGGATGGACAGCTCTCGAGGCAGGAACTaGTTGACGAAGTCCGGAGGCGCTCGCCGGCGGTCCACCACCTTG +
Preference number: 6 (lower is better)
Translates to: GCRTPRRMDSSRGRN*LTKSGGARRRSTTL
Trigger: CAAGGTGGTGGACCGCCGGCGAGCGCCTCCGGACTTCGTCAACAAGTTCCTGCCTCGAGAGCTGTCCATCCTGCGGGGAGTACGGCACCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS TCA 72 bp CCCGCAGGATGGACAGCTCTCGAGGCAGGAACTTGTTaGCGAAGTCCGGAGGCGCTCGCCGGCGGTCCACCA +
Preference number: 6 (lower is better)
Translates to: PAGWTALEAGTC*RSPEALAGGPP
Trigger: TGGTGGACCGCCGGCGAGCGCCTCCGGACTTCGTCAACAAGTTCCTGCCTCGAGAGCTGTCCATCCTGCGGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS CCA 72 bp ATACGCGGCCGAGCCGCAGTAGGTGGTGCTCAGGTCTaGGTAGCCGTGCGCCTGGCGGCCGAAACCGAAATC +
Preference number: 6 (lower is better)
Translates to: IRGRAAVGGAQV*VAVRLAAETEI
Trigger: GATTTCGGTTTCGGCCGCCAGGCGCACGGCTACCCAGACCTGAGCACCACCTACTGCGGCTCGGCCGCGTAT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS CAA 72 bp ACTCCCCGCAGGATGGACAGCTCTCGAGGCAGGAACTaGTTGACGAAGTCCGGAGGCGCTCGCCGGCGGTCC +
Preference number: 6 (lower is better)
Translates to: TPRRMDSSRGRN*LTKSGGARRRS
Trigger: GGACCGCCGGCGAGCGCCTCCGGACTTCGTCAACAAGTTCCTGCCTCGAGAGCTGTCCATCCTGCGGGGAGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS CAA 90 bp TGCCGTACTCCCCGCAGGATGGACAGCTCTCGAGGCAGGAACTTGTaGACGAAGTCCGGAGGCGCTCGCCGGCGGTCCACCACCTTGATG +
Preference number: 6 (lower is better)
Translates to: CRTPRRMDSSRGRNL*TKSGGARRRSTTLM
Trigger: CATCAAGGTGGTGGACCGCCGGCGAGCGCCTCCGGACTTCGTCAACAAGTTCCTGCCTCGAGAGCTGTCCATCCTGCGGGGAGTACGGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS TCA 72 bp CGAAGTCCGGAGGCGCTCGCCGGCGGTCCACCACCTTaGTGGCCACCGTCCCTTTATACTTCTTGGAGGTGG +
Preference number: 6 (lower is better)
Translates to: RSPEALAGGPPP*WPPSLYTSWRW
Trigger: CCACCTCCAAGAAGTATAAAGGGACGGTGGCCATCAAGGTGGTGGACCGCCGGCGAGCGCCTCCGGACTTCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS CAA 72 bp CCGTGCGCCTGGCGGCCGAAACCGAAATCCGTGATCTaGACGCGGCGCTCGTCAGGGCTTAGCAGCACGTTT +
Preference number: 6 (lower is better)
Translates to: PCAWRPKPKSVI*TRRSSGLSSTF
Trigger: AAACGTGCTGCTAAGCCCTGACGAGCGCCGCGTCAAGATCACGGATTTCGGTTTCGGCCGCCAGGCGCACGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS GCA 72 bp CCCGTTGCGCTGCACTGCCTGCAGCAGGTCGGTGGCTaGTGCCTCCATCACGATGTACAGCTTCCCATTGCA +
Preference number: 6 (lower is better)
Translates to: PVALHCLQQVGG*CLHHDVQLPIA
Trigger: TGCAATGGGAAGCTGTACATCGTGATGGAGGCAGCAGCCACCGACCTGCTGCAGGCAGTGCAGCGCAACGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS CAA 72 bp ACGAAGTCCGGAGGCGCTCGCCGGCGGTCCACCACCTaGATGGCCACCGTCCCTTTATACTTCTTGGAGGTG +
Preference number: 6 (lower is better)
Translates to: TKSGGARRRSTT*MATVPLYFLEV
Trigger: CACCTCCAAGAAGTATAAAGGGACGGTGGCCATCAAGGTGGTGGACCGCCGGCGAGCGCCTCCGGACTTCGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS GCA 72 bp GTTGCGCTGCACTGCCTGCAGCAGGTCGGTGGCTGCTaGCTCCATCACGATGTACAGCTTCCCATTGCACAC +
Preference number: 6 (lower is better)
Translates to: VALHCLQQVGGC*LHHDVQLPIAH
Trigger: GTGTGCAATGGGAAGCTGTACATCGTGATGGAGGCAGCAGCCACCGACCTGCTGCAGGCAGTGCAGCGCAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS CAA 90 bp AACTTGTTGACGAAGTCCGGAGGCGCTCGCCGGCGGTCCACCACCTaGATGGCCACCGTCCCTTTATACTTCTTGGAGGTGGCCACTTTC +
Preference number: 6 (lower is better)
Translates to: NLLTKSGGARRRSTT*MATVPLYFLEVATF
Trigger: GAAAGTGGCCACCTCCAAGAAGTATAAAGGGACGGTGGCCATCAAGGTGGTGGACCGCCGGCGAGCGCCTCCGGACTTCGTCAACAAGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS GCA 72 bp ACTTCGATGAACTCGAAAACGTGTACGATGTGCGGGTaGCGTACTCCCCGCAGGATGGACAGCTCTCGAGGC +
Preference number: 6 (lower is better)
Translates to: TSMNSKTCTMCG*RTPRRMDSSRG
Trigger: GCCTCGAGAGCTGTCCATCCTGCGGGGAGTACGGCACCCGCACATCGTACACGTTTTCGAGTTCATCGAAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS CAA 90 bp AGCAGGTCGGTGGCTGCTGCCTCCATCACGATGTACAGCTTCCCATaGCACACTTCGATGAACTCGAAAACGTGTACGATGTGCGGGTGC +
Preference number: 6 (lower is better)
Translates to: SRSVAAASITMYSFP*HTSMNSKTCTMCGC
Trigger: GCACCCGCACATCGTACACGTTTTCGAGTTCATCGAAGTGTGCAATGGGAAGCTGTACATCGTGATGGAGGCAGCAGCCACCGACCTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS GCA 72 bp CCACTTTCACCTTGGAGTAGCTGCCCTCACCTATCGTaGGGCCCAGCTTATAGCCAAGTTCGCTCAGGAGTT +
Preference number: 6 (lower is better)
Translates to: PLSPWSSCPHLS*GPAYSQVRSGV
Trigger: AACTCCTGAGCGAACTTGGCTATAAGCTGGGCCGCACGATAGGTGAGGGCAGCTACTCCAAGGTGAAAGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS GCA 72 bp ACTTCTTGGAGGTGGCCACTTTCACCTTGGAGTAGCTaGCCTCACCTATCGTGCGGCCCAGCTTATAGCCAA +
Preference number: 6 (lower is better)
Translates to: TSWRWPLSPWSS*PHLSCGPAYSQ
Trigger: TTGGCTATAAGCTGGGCCGCACGATAGGTGAGGGCAGCTACTCCAAGGTGAAAGTGGCCACCTCCAAGAAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS CCA 72 bp TCCCTTTATACTTCTTGGAGGTGGCCACTTTCACCTTaGAGTAGCTGCCCTCACCTATCGTGCGGCCCAGCT +
Preference number: 6 (lower is better)
Translates to: SLYTSWRWPLSP*SSCPHLSCGPA
Trigger: AGCTGGGCCGCACGATAGGTGAGGGCAGCTACTCCAAGGTGAAAGTGGCCACCTCCAAGAAGTATAAAGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7
CDS CAA 72 bp GTGGCTGCTGCCTCCATCACGATGTACAGCTTCCCATaGCACACTTCGATGAACTCGAAAACGTGTACGATG +
Preference number: 6 (lower is better)
Translates to: VAAASITMYSFP*HTSMNSKTCTM
Trigger: CATCGTACACGTTTTCGAGTTCATCGAAGTGTGCAATGGGAAGCTGTACATCGTGATGGAGGCAGCAGCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050373.7