Pregenerated sensors for TSSK5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000060794Ensembl transcript IDs: ENSMUST00000071119.8
Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | CTTCCCACACCCACCCACCCTCAATTCAGCAGAGAGTaGCCAGCCATGTTCCTGTTAGGGAACATGGGACAT | + |
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Preference number: 3 (lower is better) Translates to: LPTPTHPQFSRE*PAMFLLGNMGH Trigger: ATGTCCCATGTTCCCTAACAGGAACATGGCTGGGCACTCTCTGCTGAATTGAGGGTGGGTGGGTGTGGGAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS-3UTR TCA 90 bp | CACACCCACCCACCCTCAATTCAGCAGAGAGTGCCCAGCCATGTTCCTGTTAGGGGGACAGCCCTGGCCTaGAGATGGGACCTCGACGAA | + |
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Preference number: 4 (lower is better) Translates to: HTHPPSIQQRVPSHVPVRGTALA*RWDLDE Trigger: TTCGTCGAGGTCCCATCTTCAGGCCAGGGCTGTCCC...CCTAACAGGAACATGGCTGGGCACTCTCTGCTGAATTGAGGGTGGGTGGGTGTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS-3UTR CCA 90 bp | CCACCCTCAATTCAGCAGAGAGTGCCCAGCCATGTTCCTGTTAGGGAACATGGGCAGGTCCCGGCACTCTaGGGACAGCCCTGGCCTGAA | + |
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Preference number: 4 (lower is better) Translates to: PPSIQQRVPSHVPVREHGQVPAL*GQPWPE Trigger: TTCAGGCCAGGGCTGTCCCCAGAGTGCCGGGACCTG...CCCATGTTCCCTAACAGGAACATGGCTGGGCACTCTCTGCTGAATTGAGGGTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS-3UTR TCA 90 bp | GAGTGCCCAGCCATGTTCCTGTTAGGGAACATGGGACATAGAGAGCAGCCACCTAGTGGGCCACAGCGCTaGCCAGTTGCCAGAACAGCC | + |
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Preference number: 4 (lower is better) Translates to: ECPAMFLLGNMGHREQPPSGPQR*PVARTA Trigger: GGCTGTTCTGGCAACTGGTCAGCGCTGTGGCCCACT...AGGTGGCTGCTCTCTATGTCCCATGTTCCCTAACAGGAACATGGCTGGGCACTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS-3UTR CCA 90 bp | AACATGGGACATAGAGAGCAGCCACCTGCCATGGTACGCCCAAGCCCAAGGGTGAGCATGCGATGGGGCTaGTGTTCCTTGAAGGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: NMGHREQPPAMVRPSPRVSMRWG*CSLKGS Trigger: GCTGCCCTTCAAGGAACACCAGCCCCATCGCATGCT...CACCCTTGGGCTTGGGCGTACCATGGCAGGTGGCTGCTCTCTATGTCCCATGTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS-3UTR TCA 90 bp | CACACCCACCCACCCTCAATTCAGCAGAGAGTGCCCAGCCATGTTCCTGTTAGGTCAGCAGGGAGTTCTTaGGCCCCACCCAGTTGGCAA | + |
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Preference number: 4 (lower is better) Translates to: HTHPPSIQQRVPSHVPVRSAGSS*APPSWQ Trigger: TTGCCAACTGGGTGGGGCTCAAGAACTCCCTGCTGA...CCTAACAGGAACATGGCTGGGCACTCTCTGCTGAATTGAGGGTGGGTGGGTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS-3UTR TCA 90 bp | GAGTGCCCAGCCATGTTCCTGTTAGGGAACATGGGACATAGAGAGCAGCCACCTGGGGCTGGTGTTCCTTaGAGGGCAGCTTCCCAGACA | + |
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Preference number: 4 (lower is better) Translates to: ECPAMFLLGNMGHREQPPGAGVP*RAASQT Trigger: TGTCTGGGAAGCTGCCCTTCAAGGAACACCAGCCCC...AGGTGGCTGCTCTCTATGTCCCATGTTCCCTAACAGGAACATGGCTGGGCACTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS-3UTR GCA 90 bp | CACACCCACCCACCCTCAATTCAGCAGAGAGTGCCCAGCCATGTTCCTGTTAGGGGACAGCATGTGTTCTaGAGGCAGCATCCAGCAGTG | + |
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Preference number: 4 (lower is better) Translates to: HTHPPSIQQRVPSHVPVRGQHVF*RQHPAV Trigger: CACTGCTGGATGCTGCCTGCAGAACACATGCTGTCC...CCTAACAGGAACATGGCTGGGCACTCTCTGCTGAATTGAGGGTGGGTGGGTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS-3UTR GCA 90 bp | CCCACACCCACCCACCCTCAATTCAGCAGAGAGTGCCCAGCCATGTTCCTGTTATCGGGGAGCTCCAAGTaGAGAGGACAGCATGTGTTC | + |
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Preference number: 4 (lower is better) Translates to: PTPTHPQFSRECPAMFLLSGSSK*RGQHVF Trigger: GAACACATGCTGTCCTCTGCACTTGGAGCTCCCCGA...TAACAGGAACATGGCTGGGCACTCTCTGCTGAATTGAGGGTGGGTGGGTGTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS-3UTR GCA 90 bp | GAGTGCCCAGCCATGTTCCTGTTAGGGAACATGGGACATAGAGAGCAGCCACCTTCCTTGGAGATGTCCTaGCACTGGAGGAGCTGGAGC | + |
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Preference number: 4 (lower is better) Translates to: ECPAMFLLGNMGHREQPPSLEMS*HWRSWS Trigger: GCTCCAGCTCCTCCAGTGGCAGGACATCTCCAAGGA...AGGTGGCTGCTCTCTATGTCCCATGTTCCCTAACAGGAACATGGCTGGGCACTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS-3UTR CCA 90 bp | ATGGGACATAGAGAGCAGCCACCTGCCATGGTACGCCCAAGCCCAAGGGTGGTAAGGCCAGGTAGACCTTaGAGAAAGCACCAGATCCGA | + |
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Preference number: 4 (lower is better) Translates to: MGHREQPPAMVRPSPRVVRPGRP*RKHQIR Trigger: TCGGATCTGGTGCTTTCTCCAAGGTCTACCTGGCCT...TACCACCCTTGGGCTTGGGCGTACCATGGCAGGTGGCTGCTCTCTATGTCCCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS-3UTR CCA 90 bp | AATCTTCCCACACCCACCCACCCTCAATTCAGCAGAGAGTGCCCAGCCATGTTCGCTCATGAGGATCTCTaGGGCCGTATAGGCCACCGA | + |
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Preference number: 4 (lower is better) Translates to: NLPTPTHPQFSRECPAMFAHEDL*GRIGHR Trigger: TCGGTGGCCTATACGGCCCCAGAGATCCTCATGAGC...GAACATGGCTGGGCACTCTCTGCTGAATTGAGGGTGGGTGGGTGTGGGAAGATT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS-3UTR CCA 90 bp | CCTCAATTCAGCAGAGAGTGCCCAGCCATGTTCCTGTTAGGGAACATGGGACATCTCTGGGGACAGCCCTaGCCTGAAGATGGGACCTCG | + |
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Preference number: 4 (lower is better) Translates to: PQFSRECPAMFLLGNMGHLWGQP*PEDGTS Trigger: CGAGGTCCCATCTTCAGGCCAGGGCTGTCCCCAGAG...ATGTCCCATGTTCCCTAACAGGAACATGGCTGGGCACTCTCTGCTGAATTGAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS-3UTR TCA 90 bp | TTCAGCAGAGAGTGCCCAGCCATGTTCCTGTTAGGGAACATGGGACATAGAGAGGGCAGCATCCAGCAGTaGGCAGCTACCTGCTGTAGG | + |
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Preference number: 4 (lower is better) Translates to: FSRECPAMFLLGNMGHREGSIQQ*AATCCR Trigger: CCTACAGCAGGTAGCTGCTCACTGCTGGATGCTGCC...CTCTCTATGTCCCATGTTCCCTAACAGGAACATGGCTGGGCACTCTCTGCTGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS-3UTR GCA 90 bp | AACATGGGACATAGAGAGCAGCCACCTGCCATGGTACGCCCAAGCCCAAGGGTGAGTCCCTGTGTACAATaGCAACATTGTGGCAGTGGG | + |
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Preference number: 4 (lower is better) Translates to: NMGHREQPPAMVRPSPRVSPCVQ*QHCGSG Trigger: CCCACTGCCACAATGTTGGCATTGTACACAGGGACT...CACCCTTGGGCTTGGGCGTACCATGGCAGGTGGCTGCTCTCTATGTCCCATGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS-3UTR GCA 90 bp | GAGTGCCCAGCCATGTTCCTGTTAGGGAACATGGGACATAGAGAGCAGCCACCTCCTTTGCTTCTGGCATaGCTGGTGTCTCTGTCAGGC | + |
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Preference number: 4 (lower is better) Translates to: ECPAMFLLGNMGHREQPPPLLLA*LVSLSG Trigger: GCCTGACAGAGACACCAGGCATGCCAGAAGCAAAGG...AGGTGGCTGCTCTCTATGTCCCATGTTCCCTAACAGGAACATGGCTGGGCACTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS-3UTR CCA 90 bp | CCCACACCCACCCACCCTCAATTCAGCAGAGAGTGCCCAGCCATGTTCCTGTTATGGAGCCTTTGCTTCTaGCATGCCTGGTGTCTCTGT | + |
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Preference number: 4 (lower is better) Translates to: PTPTHPQFSRECPAMFLLWSLCF*HAWCLC Trigger: ACAGAGACACCAGGCATGCCAGAAGCAAAGGCTCCA...TAACAGGAACATGGCTGGGCACTCTCTGCTGAATTGAGGGTGGGTGGGTGTGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS-3UTR CCA 90 bp | GAGTGCCCAGCCATGTTCCTGTTAGGGAACATGGGACATAGAGAGCAGCCACCTTGCCACTGGAGGAGCTaGAGCCTTTGCTTCTGGCAT | + |
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Preference number: 4 (lower is better) Translates to: ECPAMFLLGNMGHREQPPCHWRS*SLCFWH Trigger: ATGCCAGAAGCAAAGGCTCCAGCTCCTCCAGTGGCA...AGGTGGCTGCTCTCTATGTCCCATGTTCCCTAACAGGAACATGGCTGGGCACTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS-3UTR TCA 90 bp | TTAATCTTCCCACACCCACCCACCCTCAATTCAGCAGAGAGTGCCCAGCCATGTACTGTGGACCAGGAATaGTCCTGTTCTCGGGGAGCT | + |
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Preference number: 4 (lower is better) Translates to: LIFPHPPTLNSAESAQPCTVDQE*SCSRGA Trigger: AGCTCCCCGAGAACAGGATCATTCCTGGTCCACAGT...ACATGGCTGGGCACTCTCTGCTGAATTGAGGGTGGGTGGGTGTGGGAAGATTAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS-3UTR CCA 90 bp | CCCTCAATTCAGCAGAGAGTGCCCAGCCATGTTCCTGTTAGGGAACATGGGACAAGGCTCTGTGTTGTCTaGGGCTACTGTGGACCAGGA | + |
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Preference number: 4 (lower is better) Translates to: PSIQQRVPSHVPVREHGTRLCVV*GYCGPG Trigger: TCCTGGTCCACAGTAGCCCCAGACAACACAGAGCCT...TGTCCCATGTTCCCTAACAGGAACATGGCTGGGCACTCTCTGCTGAATTGAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS-3UTR CCA 90 bp | CACCCTCAATTCAGCAGAGAGTGCCCAGCCATGTTCCTGTTAGGGAACATGGGATGCTTCTGGCATGCCTaGTGTCTCTGTCAGGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: HPQFSRECPAMFLLGNMGCFWHA*CLCQAL Trigger: CAGAGCCTGACAGAGACACCAGGCATGCCAGAAGCA...TCCCATGTTCCCTAACAGGAACATGGCTGGGCACTCTCTGCTGAATTGAGGGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS-3UTR CCA 90 bp | CACCCTCAATTCAGCAGAGAGTGCCCAGCCATGTTCCTGTTAGGGAACATGGGACAGAGACGGTCTCCTTaGAGATGTCCTGCCACTGGA | + |
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Preference number: 4 (lower is better) Translates to: HPQFSRECPAMFLLGNMGQRRSP*RCPATG Trigger: TCCAGTGGCAGGACATCTCCAAGGAGACCGTCTCTG...TCCCATGTTCCCTAACAGGAACATGGCTGGGCACTCTCTGCTGAATTGAGGGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS-3UTR GCA 90 bp | AGAGAGTGCCCAGCCATGTTCCTGTTAGGGAACATGGGACATAGAGAGCAGCCAGAATCAGGTTCAGCATaGGATGGGGCTGGTGTTCCT | + |
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Preference number: 4 (lower is better) Translates to: RECPAMFLLGNMGHREQPESGSA*DGAGVP Trigger: AGGAACACCAGCCCCATCGCATGCTGAACCTGATTC...TGGCTGCTCTCTATGTCCCATGTTCCCTAACAGGAACATGGCTGGGCACTCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS-3UTR CCA 90 bp | TTCAGCAGAGAGTGCCCAGCCATGTTCCTGTTAGGGAACATGGGACATAGAGAGCAGATCCGATCTTCTTaGAGGAGAGCAAGTAACCGT | + |
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Preference number: 4 (lower is better) Translates to: FSRECPAMFLLGNMGHREQIRSS*RRASNR Trigger: ACGGTTACTTGCTCTCCTCCAAGAAGATCGGATCTG...CTCTCTATGTCCCATGTTCCCTAACAGGAACATGGCTGGGCACTCTCTGCTGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS CCA 90 bp | CTGAAGCAGCCCTCGGATCAGGTCCCGGCACTCTGGGGACAGCCCTaGCCTGAAGATGGGACCTCGACGAATCAGGTTCAGCATGCGATG | + |
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Preference number: 5 (lower is better) Translates to: LKQPSDQVPALWGQP*PEDGTSTNQVQHAM Trigger: CATCGCATGCTGAACCTGATTCGTCGAGGTCCCATCTTCAGGCCAGGGCTGTCCCCAGAGTGCCGGGACCTGATCCGAGGGCTGCTTCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS CCA 90 bp | TGCAGGCTTCCAGGTGTTGCACAGCTGGGCCAGAGACGGTCTCCTTaGAGATGTCCTGCCACTGGAGGAGCTGGAGCCTTTGCTTCTGGC | + |
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Preference number: 5 (lower is better) Translates to: CRLPGVAQLGQRRSP*RCPATGGAGAFASG Trigger: GCCAGAAGCAAAGGCTCCAGCTCCTCCAGTGGCAGGACATCTCCAAGGAGACCGTCTCTGGCCCAGCTGTGCAACACCTGGAAGCCTGCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS GCA 90 bp | ACGGTCTCCTTGGAGATGTCCTGCCACTGGAGGAGCTGGAGCCTTTaGTTCTGGCATGCCTGGTGTCTCTGTCAGGCTCTGTGTTGTCTG | + |
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Preference number: 5 (lower is better) Translates to: TVSLEMSCHWRSWSL*FWHAWCLCQALCCL Trigger: CAGACAACACAGAGCCTGACAGAGACACCAGGCATGCCAGAAGCAAAGGCTCCAGCTCCTCCAGTGGCAGGACATCTCCAAGGAGACCGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS CCA 90 bp | TGGGGCTGGTGTTCCTTGAAGGGCAGCTTCCCAGACACCATAGCATaGAGGATGATCCCTAGGCTCCACAGATCAGCCTGCTCACCGTTG | + |
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Preference number: 5 (lower is better) Translates to: WGWCSLKGSFPDTIA*RMIPRLHRSACSPL Trigger: CAACGGTGAGCAGGCTGATCTGTGGAGCCTAGGGATCATCCTCCATGCTATGGTGTCTGGGAAGCTGCCCTTCAAGGAACACCAGCCCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS CCA 90 bp | CCTGGCCTGAAGATGGGACCTCGACGAATCAGGTTCAGCATGCGATaGGGCTGGTGTTCCTTGAAGGGCAGCTTCCCAGACACCATAGCA | + |
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Preference number: 5 (lower is better) Translates to: PGLKMGPRRIRFSMR*GWCSLKGSFPDTIA Trigger: TGCTATGGTGTCTGGGAAGCTGCCCTTCAAGGAACACCAGCCCCATCGCATGCTGAACCTGATTCGTCGAGGTCCCATCTTCAGGCCAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS-3UTR CAA 90 bp | AGAGAGTGCCCAGCCATGTTCCTGTTAGGGAACATGGGACATAGAGAGCAGCCAGCAGGCTTCCAGGTGTaGCACAGCTGGGCCAGAGAC | + |
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Preference number: 5 (lower is better) Translates to: RECPAMFLLGNMGHREQPAGFQV*HSWARD Trigger: GTCTCTGGCCCAGCTGTGCAACACCTGGAAGCCTGC...TGGCTGCTCTCTATGTCCCATGTTCCCTAACAGGAACATGGCTGGGCACTCTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS TCA 90 bp | CCAAGTGCAGAGGACAGCATGTGTTCTGCAGGCAGCATCCAGCAGTaGGCAGCTACCTGCTGTAGGTCCAGACGTTCACATGGATGCAGC | + |
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Preference number: 5 (lower is better) Translates to: PSAEDSMCSAGSIQQ*AATCCRSRRSHGCS Trigger: GCTGCATCCATGTGAACGTCTGGACCTACAGCAGGTAGCTGCTCACTGCTGGATGCTGCCTGCAGAACACATGCTGTCCTCTGCACTTGG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS CCA 90 bp | CTGAAGATGGGACCTCGACGAATCAGGTTCAGCATGCGATGGGGCTaGTGTTCCTTGAAGGGCAGCTTCCCAGACACCATAGCATGGAGG | + |
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Preference number: 5 (lower is better) Translates to: LKMGPRRIRFSMRWG*CSLKGSFPDTIAWR Trigger: CCTCCATGCTATGGTGTCTGGGAAGCTGCCCTTCAAGGAACACCAGCCCCATCGCATGCTGAACCTGATTCGTCGAGGTCCCATCTTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS-3UTR CAA 90 bp | TTAATCTTCCCACACCCACCCACCCTCAATTCAGCAGAGAGTGCCCAGCCATGTCTCAGCAGGGAGTTCTaGAGCCCCACCCAGTTGGCA | + |
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Preference number: 5 (lower is better) Translates to: LIFPHPPTLNSAESAQPCLSREF*SPTQLA Trigger: TGCCAACTGGGTGGGGCTCAAGAACTCCCTGCTGAG...ACATGGCTGGGCACTCTCTGCTGAATTGAGGGTGGGTGGGTGTGGGAAGATTAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS-3UTR CAA 90 bp | TTAATCTTCCCACACCCACCCACCCTCAATTCAGCAGAGAGTGCCCAGCCATGTGAGGAGCTGGAGCCTTaGCTTCTGGCATGCCTGGTG | + |
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Preference number: 5 (lower is better) Translates to: LIFPHPPTLNSAESAQPCEELEP*LLACLV Trigger: CACCAGGCATGCCAGAAGCAAAGGCTCCAGCTCCTC...ACATGGCTGGGCACTCTCTGCTGAATTGAGGGTGGGTGGGTGTGGGAAGATTAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS-3UTR CAA 90 bp | CCCACACCCACCCACCCTCAATTCAGCAGAGAGTGCCCAGCCATGTTCCTGTTAGAGGATAGCCTAGGGTaGTGCTTCATTCGCTCACGT | + |
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Preference number: 5 (lower is better) Translates to: PTPTHPQFSRECPAMFLLEDSLG*CFIRSR Trigger: ACGTGAGCGAATGAAGCACAACCCTAGGCTATCCTC...TAACAGGAACATGGCTGGGCACTCTCTGCTGAATTGAGGGTGGGTGGGTGTGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS-3UTR CAA 90 bp | CCACCCTCAATTCAGCAGAGAGTGCCCAGCCATGTTCCTGTTAGGGAACATGGGTCACCGTTGTACTTCTaGCTCATGAGGATCTCTGGG | + |
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Preference number: 5 (lower is better) Translates to: PPSIQQRVPSHVPVREHGSPLYF*LMRISG Trigger: CCCAGAGATCCTCATGAGCAAGAAGTACAACGGTGA...CCCATGTTCCCTAACAGGAACATGGCTGGGCACTCTCTGCTGAATTGAGGGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS-3UTR CAA 90 bp | TTCAGCAGAGAGTGCCCAGCCATGTTCCTGTTAGGGAACATGGGACATAGAGAGTTGAGCCCCACCCAGTaGGCAAAGCCAAAATCTGTC | + |
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Preference number: 5 (lower is better) Translates to: FSRECPAMFLLGNMGHRELSPTQ*AKPKSV Trigger: GACAGATTTTGGCTTTGCCAACTGGGTGGGGCTCAA...CTCTCTATGTCCCATGTTCCCTAACAGGAACATGGCTGGGCACTCTCTGCTGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS CCA 90 bp | GGTTGTGCTTCATTCGCTCACGTGTTGCATAGGCCAGGTAGACCTTaGAGAAAGCACCAGATCCGATCTTCTTGGAGGAGAGCAAGTAAC | + |
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Preference number: 5 (lower is better) Translates to: GCASFAHVLHRPGRP*RKHQIRSSWRRASN Trigger: GTTACTTGCTCTCCTCCAAGAAGATCGGATCTGGTGCTTTCTCCAAGGTCTACCTGGCCTATGCAACACGTGAGCGAATGAAGCACAACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS CCA 90 bp | CATAGGCCAGGTAGACCTTGGAGAAAGCACCAGATCCGATCTTCTTaGAGGAGAGCAAGTAACCGTTGTTCATGCATTCTCGAACCTGTT | + |
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Preference number: 5 (lower is better) Translates to: HRPGRPWRKHQIRSS*RRASNRCSCILEPV Trigger: AACAGGTTCGAGAATGCATGAACAACGGTTACTTGCTCTCCTCCAAGAAGATCGGATCTGGTGCTTTCTCCAAGGTCTACCTGGCCTATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS CCA 72 bp | CCCTCGGATCAGGTCCCGGCACTCTGGGGACAGCCCTaGCCTGAAGATGGGACCTCGACGAATCAGGTTCAG | + |
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Preference number: 6 (lower is better) Translates to: PSDQVPALWGQP*PEDGTSTNQVQ Trigger: CTGAACCTGATTCGTCGAGGTCCCATCTTCAGGCCAGGGCTGTCCCCAGAGTGCCGGGACCTGATCCGAGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS CCA 72 bp | GGGCCAGAGACGGTCTCCTTGGAGATGTCCTGCCACTaGAGGAGCTGGAGCCTTTGCTTCTGGCATGCCTGG | + |
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Preference number: 6 (lower is better) Translates to: GPETVSLEMSCH*RSWSLCFWHAW Trigger: CCAGGCATGCCAGAAGCAAAGGCTCCAGCTCCTCCAGTGGCAGGACATCTCCAAGGAGACCGTCTCTGGCCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS CAA 90 bp | GTGCAGGCTTCCAGGTGTTGCACAGCTGGGCCAGAGACGGTCTCCTaGGAGATGTCCTGCCACTGGAGGAGCTGGAGCCTTTGCTTCTGG | + |
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Preference number: 6 (lower is better) Translates to: VQASRCCTAGPETVS*EMSCHWRSWSLCFW Trigger: CCAGAAGCAAAGGCTCCAGCTCCTCCAGTGGCAGGACATCTCCAAGGAGACCGTCTCTGGCCCAGCTGTGCAACACCTGGAAGCCTGCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS CCA 72 bp | CCAGGTGTTGCACAGCTGGGCCAGAGACGGTCTCCTTaGAGATGTCCTGCCACTGGAGGAGCTGGAGCCTTT | + |
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Preference number: 6 (lower is better) Translates to: PGVAQLGQRRSP*RCPATGGAGAF Trigger: AAAGGCTCCAGCTCCTCCAGTGGCAGGACATCTCCAAGGAGACCGTCTCTGGCCCAGCTGTGCAACACCTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS CAA 72 bp | TCCAGGTGTTGCACAGCTGGGCCAGAGACGGTCTCCTaGGAGATGTCCTGCCACTGGAGGAGCTGGAGCCTT | + |
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Preference number: 6 (lower is better) Translates to: SRCCTAGPETVS*EMSCHWRSWSL Trigger: AAGGCTCCAGCTCCTCCAGTGGCAGGACATCTCCAAGGAGACCGTCTCTGGCCCAGCTGTGCAACACCTGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS GCA 72 bp | TCGGGGAGCTCCAAGTGCAGAGGACAGCATGTGTTCTaGAGGCAGCATCCAGCAGTGAGCAGCTACCTGCTG | + |
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Preference number: 6 (lower is better) Translates to: SGSSKCRGQHVF*RQHPAVSSYLL Trigger: CAGCAGGTAGCTGCTCACTGCTGGATGCTGCCTGCAGAACACATGCTGTCCTCTGCACTTGGAGCTCCCCGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS GCA 72 bp | TTGGAGATGTCCTGCCACTGGAGGAGCTGGAGCCTTTaGTTCTGGCATGCCTGGTGTCTCTGTCAGGCTCTG | + |
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Preference number: 6 (lower is better) Translates to: LEMSCHWRSWSL*FWHAWCLCQAL Trigger: CAGAGCCTGACAGAGACACCAGGCATGCCAGAAGCAAAGGCTCCAGCTCCTCCAGTGGCAGGACATCTCCAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS CCA 72 bp | CACTGGAGGAGCTGGAGCCTTTGCTTCTGGCATGCCTaGTGTCTCTGTCAGGCTCTGTGTTGTCTGGGGCTA | + |
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Preference number: 6 (lower is better) Translates to: HWRSWSLCFWHA*CLCQALCCLGL Trigger: TAGCCCCAGACAACACAGAGCCTGACAGAGACACCAGGCATGCCAGAAGCAAAGGCTCCAGCTCCTCCAGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS CAA 72 bp | GAGTATTCCGCCGGGGCTTCAGCCATGGACACAATCTaGATAGCCACCATAGTGTGGCGCTTGCCCCGCAAG | + |
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Preference number: 6 (lower is better) Translates to: EYSAGASAMDTI*IATIVWRLPRK Trigger: CTTGCGGGGCAAGCGCCACACTATGGTGGCTATCAAGATTGTGTCCATGGCTGAAGCCCCGGCGGAATACTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS CAA 72 bp | GCCACCGAGCCACAGAAGGTGCTCAGCAGGGAGTTCTaGAGCCCCACCCAGTTGGCAAAGCCAAAATCTGTC | + |
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Preference number: 6 (lower is better) Translates to: ATEPQKVLSREF*SPTQLAKPKSV Trigger: GACAGATTTTGGCTTTGCCAACTGGGTGGGGCTCAAGAACTCCCTGCTGAGCACCTTCTGTGGCTCGGTGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS CAA 72 bp | CTTGGAGATGTCCTGCCACTGGAGGAGCTGGAGCCTTaGCTTCTGGCATGCCTGGTGTCTCTGTCAGGCTCT | + |
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Preference number: 6 (lower is better) Translates to: LGDVLPLEELEP*LLACLVSLSGS Trigger: AGAGCCTGACAGAGACACCAGGCATGCCAGAAGCAAAGGCTCCAGCTCCTCCAGTGGCAGGACATCTCCAAG 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS CAA 90 bp | GGACCTCGACGAATCAGGTTCAGCATGCGATGGGGCTGGTGTTCCTaGAAGGGCAGCTTCCCAGACACCATAGCATGGAGGATGATCCCT | + |
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Preference number: 6 (lower is better) Translates to: GPRRIRFSMRWGWCS*KGSFPDTIAWRMIP Trigger: AGGGATCATCCTCCATGCTATGGTGTCTGGGAAGCTGCCCTTCAAGGAACACCAGCCCCATCGCATGCTGAACCTGATTCGTCGAGGTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS TCA 72 bp | GTACAATGCCAACATTGTGGCAGTGGGCCACAGCGCTaGCCAGTTGCCAGAACAGCCTTCGGGCTTCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: VQCQHCGSGPQR*PVARTAFGLLP Trigger: AGGAAGAAGCCCGAAGGCTGTTCTGGCAACTGGTCAGCGCTGTGGCCCACTGCCACAATGTTGGCATTGTAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS TCA 72 bp | CCACCGAGCCACAGAAGGTGCTCAGCAGGGAGTTCTTaGGCCCCACCCAGTTGGCAAAGCCAAAATCTGTCA | + |
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Preference number: 6 (lower is better) Translates to: PPSHRRCSAGSS*APPSWQSQNLS Trigger: TGACAGATTTTGGCTTTGCCAACTGGGTGGGGCTCAAGAACTCCCTGCTGAGCACCTTCTGTGGCTCGGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS CCA 72 bp | GGACCTCGACGAATCAGGTTCAGCATGCGATGGGGCTaGTGTTCCTTGAAGGGCAGCTTCCCAGACACCATA | + |
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Preference number: 6 (lower is better) Translates to: GPRRIRFSMRWG*CSLKGSFPDTI Trigger: TATGGTGTCTGGGAAGCTGCCCTTCAAGGAACACCAGCCCCATCGCATGCTGAACCTGATTCGTCGAGGTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS CCA 72 bp | AAGATGGGACCTCGACGAATCAGGTTCAGCATGCGATaGGGCTGGTGTTCCTTGAAGGGCAGCTTCCCAGAC | + |
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Preference number: 6 (lower is better) Translates to: KMGPRRIRFSMR*GWCSLKGSFPD Trigger: GTCTGGGAAGCTGCCCTTCAAGGAACACCAGCCCCATCGCATGCTGAACCTGATTCGTCGAGGTCCCATCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS CCA 72 bp | ATGTCCTGCCACTGGAGGAGCTGGAGCCTTTGCTTCTaGCATGCCTGGTGTCTCTGTCAGGCTCTGTGTTGT | + |
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Preference number: 6 (lower is better) Translates to: MSCHWRSWSLCF*HAWCLCQALCC Trigger: ACAACACAGAGCCTGACAGAGACACCAGGCATGCCAGAAGCAAAGGCTCCAGCTCCTCCAGTGGCAGGACAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS TCA 72 bp | GAGGACAGCATGTGTTCTGCAGGCAGCATCCAGCAGTaGGCAGCTACCTGCTGTAGGTCCAGACGTTCACAT | + |
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Preference number: 6 (lower is better) Translates to: EDSMCSAGSIQQ*AATCCRSRRSH Trigger: ATGTGAACGTCTGGACCTACAGCAGGTAGCTGCTCACTGCTGGATGCTGCCTGCAGAACACATGCTGTCCTC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS CCA 72 bp | TCAGCCATGGACACAATCTTGATAGCCACCATAGTGTaGCGCTTGCCCCGCAAGTCAGAGGATAGCCTAGGG | + |
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Preference number: 6 (lower is better) Translates to: SAMDTILIATIV*RLPRKSEDSLG Trigger: CCCTAGGCTATCCTCTGACTTGCGGGGCAAGCGCCACACTATGGTGGCTATCAAGATTGTGTCCATGGCTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS CAA 90 bp | AACTTTCTGGAGTATTCCGCCGGGGCTTCAGCCATGGACACAATCTaGATAGCCACCATAGTGTGGCGCTTGCCCCGCAAGTCAGAGGAT | + |
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Preference number: 6 (lower is better) Translates to: NFLEYSAGASAMDTI*IATIVWRLPRKSED Trigger: ATCCTCTGACTTGCGGGGCAAGCGCCACACTATGGTGGCTATCAAGATTGTGTCCATGGCTGAAGCCCCGGCGGAATACTCCAGAAAGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS CAA 90 bp | GAGCCACAGAAGGTGCTCAGCAGGGAGTTCTTGAGCCCCACCCAGTaGGCAAAGCCAAAATCTGTCAGCTTTATGAAGCCCTGGTCATCC | + |
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Preference number: 6 (lower is better) Translates to: EPQKVLSREFLSPTQ*AKPKSVSFMKPWSS Trigger: GGATGACCAGGGCTTCATAAAGCTGACAGATTTTGGCTTTGCCAACTGGGTGGGGCTCAAGAACTCCCTGCTGAGCACCTTCTGTGGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS CCA 72 bp | TTCAAGTCCCTGTGTACAATGCCAACATTGTGGCAGTaGGCCACAGCGCTGACCAGTTGCCAGAACAGCCTT | + |
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Preference number: 6 (lower is better) Translates to: FKSLCTMPTLWQ*ATALTSCQNSL Trigger: AAGGCTGTTCTGGCAACTGGTCAGCGCTGTGGCCCACTGCCACAATGTTGGCATTGTACACAGGGACTTGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS CAA 72 bp | ATGGACACAATCTTGATAGCCACCATAGTGTGGCGCTaGCCCCGCAAGTCAGAGGATAGCCTAGGGTTGTGC | + |
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Preference number: 6 (lower is better) Translates to: MDTILIATIVWR*PRKSEDSLGLC Trigger: GCACAACCCTAGGCTATCCTCTGACTTGCGGGGCAAGCGCCACACTATGGTGGCTATCAAGATTGTGTCCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS CAA 72 bp | ATGATCCCTAGGCTCCACAGATCAGCCTGCTCACCGTaGTACTTCTTGCTCATGAGGATCTCTGGGGCCGTA | + |
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Preference number: 6 (lower is better) Translates to: MIPRLHRSACSP*YFLLMRISGAV Trigger: TACGGCCCCAGAGATCCTCATGAGCAAGAAGTACAACGGTGAGCAGGCTGATCTGTGGAGCCTAGGGATCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS GCA 72 bp | GCATGGAGGATGATCCCTAGGCTCCACAGATCAGCCTaGTCACCGTTGTACTTCTTGCTCATGAGGATCTCT | + |
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Preference number: 6 (lower is better) Translates to: AWRMIPRLHRSA*SPLYFLLMRIS Trigger: AGAGATCCTCATGAGCAAGAAGTACAACGGTGAGCAGGCTGATCTGTGGAGCCTAGGGATCATCCTCCATGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS CCA 72 bp | TCACATTTCAAGTCCCTGTGTACAATGCCAACATTGTaGCAGTGGGCCACAGCGCTGACCAGTTGCCAGAAC | + |
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Preference number: 6 (lower is better) Translates to: SHFKSLCTMPTL*QWATALTSCQN Trigger: GTTCTGGCAACTGGTCAGCGCTGTGGCCCACTGCCACAATGTTGGCATTGTACACAGGGACTTGAAATGTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS TCA 72 bp | AGTAACCGTTGTTCATGCATTCTCGAACCTGTTCTATaGACACCCTCTGATCCGACTTGCGCCAGCTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: SNRCSCILEPVL*TPSDPTCASCC Trigger: GCAGCAGCTGGCGCAAGTCGGATCAGAGGGTGTTCATAGAACAGGTTCGAGAATGCATGAACAACGGTTACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS CAA 72 bp | TTTTCACATTTCAAGTCCCTGTGTACAATGCCAACATaGTGGCAGTGGGCCACAGCGCTGACCAGTTGCCAG | + |
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Preference number: 6 (lower is better) Translates to: FSHFKSLCTMPT*WQWATALTSCQ Trigger: CTGGCAACTGGTCAGCGCTGTGGCCCACTGCCACAATGTTGGCATTGTACACAGGGACTTGAAATGTGAAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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| CDS TCA 72 bp | CCACCCAGTTGGCAAAGCCAAAATCTGTCAGCTTTATaGAGCCCTGGTCATCCAACAGGATATTTTCACATT | + |
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Preference number: 6 (lower is better) Translates to: PPSWQSQNLSAL*SPGHPTGYFHI Trigger: AATGTGAAAATATCCTGTTGGATGACCAGGGCTTCATAAAGCTGACAGATTTTGGCTTTGCCAACTGGGTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071119.8 |
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